RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14376
         (327 letters)



>d1hcna_ g.17.1.4 (A:) Glycoprotein hormones alpha chain
           (Gonadotropin A, Follitropin alpha) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 85

 Score = 25.2 bits (55), Expect = 3.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 247 CGFAIGYVTTLQIKITSPLTHNISGTAKAC 276
           C F+  Y T L+ K T  +  N++  +  C
Sbjct: 27  CCFSRAYPTPLRSKKTMLVQKNVTSESTCC 56


>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
           virus 1 [TaxId: 10298]}
          Length = 1122

 Score = 25.9 bits (57), Expect = 7.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 85  LINVLPLSILFMSMISFNNLCLKNVGVSFYYIG 117
            IN+ P ++  ++M    N  L+    S Y+I 
Sbjct: 872 FINLAPNNVSELAMYYMANQILRYCDHSTYFIN 904


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.140    0.445 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,203,641
Number of extensions: 53809
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 17
Length of query: 327
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 241
Effective length of database: 1,226,816
Effective search space: 295662656
Effective search space used: 295662656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.3 bits)