BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14377
(848 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 320 bits (819), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 145/212 (68%), Positives = 168/212 (79%)
Query: 507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
+ PIVYTPTVGLACQ YGL FRRPRGLFI+IHD+GHI+ L++WPE+ I+AIVVTDG
Sbjct: 82 IERFXPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATXLQSWPESVIKAIVVTDG 141
Query: 567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
ERILGLGDLG YG GIPVGKL+LYTA G+KPHQCLP+ LDVGT+ + LL DPLYIGLR
Sbjct: 142 ERILGLGDLGCYGXGIPVGKLALYTACGGVKPHQCLPVXLDVGTDNETLLKDPLYIGLRH 201
Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
+R GQAYDD ++EF +AV +RYG + LIQFEDFAN +AFR L YRN+YC FNDDIQGT
Sbjct: 202 KRIRGQAYDDLLDEFXEAVTSRYGXNCLIQFEDFANANAFRLLHKYRNKYCTFNDDIQGT 261
Query: 687 XXXXXXXXXXXXRITKTRLSDNTILFQGAGEG 718
RITK RLSD+T+LFQGAGE
Sbjct: 262 ASVAVAGLLAALRITKNRLSDHTVLFQGAGEA 293
Score = 122 bits (306), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 77/99 (77%), Gaps = 2/99 (2%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
LLA+LRITK RLSD+T+LFQGAGEA+LGIA+L V A QKEG S+++A +IW VDSKGLI
Sbjct: 269 LLAALRITKNRLSDHTVLFQGAGEAALGIANLIVXAXQKEGVSKEEAIKRIWXVDSKGLI 328
Query: 61 VKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILI 99
VK R +T K H+A +H KNL D+VK +KP++LI
Sbjct: 329 VKGR--ASLTPEKEHFAHEHCEXKNLEDIVKDIKPTVLI 365
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/94 (63%), Positives = 73/94 (77%), Gaps = 2/94 (2%)
Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
VAGLLA+LRITK RLSD+T+LFQGAGEA+LGIA+L V A QKEG S+++A +IW VDSK
Sbjct: 266 VAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVXAXQKEGVSKEEAIKRIWXVDSK 325
Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVK 317
GLIVK R +T K H+A +H KNL D+VK
Sbjct: 326 GLIVKGR--ASLTPEKEHFAHEHCEXKNLEDIVK 357
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 58/72 (80%), Gaps = 1/72 (1%)
Query: 434 AAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPV 493
AAI FT IL+D AAFNKRPIIFALSNPTSKAECTAEQ Y T+GRG+FASGSPFDPV
Sbjct: 368 AAIGGAFTQQILQDXAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFDPV 427
Query: 494 TY-KGKTFTPGQ 504
T G+T PGQ
Sbjct: 428 TLPSGQTLYPGQ 439
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 49/54 (90%)
Query: 376 IRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
I+AIVVTDGERILGLGDLG YG GIPVGKL+LYTA G+KPHQCLP+ LDVGT+
Sbjct: 133 IKAIVVTDGERILGLGDLGCYGXGIPVGKLALYTACGGVKPHQCLPVXLDVGTD 186
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVK 201
A+LGIA+L V A QKEG S+++A +IW VDSKGLIVK R +T K H+A +H K
Sbjct: 293 AALGIANLIVXAXQKEGVSKEEAIKRIWXVDSKGLIVKGR--ASLTPEKEHFAHEHCEXK 350
Query: 202 NLADVVKTVKPSILIGESCV 221
NL D+VK +KP++LIG + +
Sbjct: 351 NLEDIVKDIKPTVLIGVAAI 370
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 33/35 (94%)
Query: 750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSGEG 784
+GTASVA+AGLLA+LRITK RLSD+T+LFQG+GE
Sbjct: 259 QGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEA 293
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 816 EDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
+DRNE+LFY++L+ + PIVYTPTVGLACQ
Sbjct: 67 QDRNEKLFYKVLTSDIERFXPIVYTPTVGLACQ 99
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 316 VKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTD 375
+ G AF++EERQ L IHGLLP QD Q++ N +R L++YI L +L + +
Sbjct: 12 LNKGXAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLXSLQDRNE 71
Query: 376 --IRAIVVTDGERI 387
++ +D ER
Sbjct: 72 KLFYKVLTSDIERF 85
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 317 bits (812), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 143/212 (67%), Positives = 168/212 (79%)
Query: 507 VVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDG 566
+ + MPIVYTPTVGLACQ+Y L+FR+PRGLFI+IHD+GHI+ VL WPE I+AIVVTDG
Sbjct: 105 IEKFMPIVYTPTVGLACQQYSLVFRKPRGLFITIHDRGHIASVLNAWPEDVIKAIVVTDG 164
Query: 567 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
ERILGLGDLG GMGIPVGKL+LYTA G+ P +CLP+ LDVGT ++LL DPLYIGLRQ
Sbjct: 165 ERILGLGDLGCNGMGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQ 224
Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
RR G YDDF++EFM+AV ++YG + LIQFEDFAN +AFR L+ YRN+YC FNDDIQGT
Sbjct: 225 RRVRGSEYDDFLDEFMEAVSSKYGMNCLIQFEDFANVNAFRLLNKYRNQYCTFNDDIQGT 284
Query: 687 XXXXXXXXXXXXRITKTRLSDNTILFQGAGEG 718
RITK +LSD TILFQGAGE
Sbjct: 285 ASVAVAGLLAALRITKNKLSDQTILFQGAGEA 316
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 74/99 (74%), Gaps = 2/99 (2%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
LLA+LRITK +LSD TILFQGAGEA+LGIA L VMA++KEG ++ A KIW+VDSKGLI
Sbjct: 292 LLAALRITKNKLSDQTILFQGAGEAALGIAHLIVMALEKEGLPKEKAIKKIWLVDSKGLI 351
Query: 61 VKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILI 99
VK R +T K +A +H +KNL +V+ +KP+ LI
Sbjct: 352 VKGR--ASLTQEKEKFAHEHEEMKNLEAIVQEIKPTALI 388
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 71/94 (75%), Gaps = 2/94 (2%)
Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
VAGLLA+LRITK +LSD TILFQGAGEA+LGIA L VMA++KEG ++ A KIW+VDSK
Sbjct: 289 VAGLLAALRITKNKLSDQTILFQGAGEAALGIAHLIVMALEKEGLPKEKAIKKIWLVDSK 348
Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVK 317
GLIVK R +T K +A +H +KNL +V+
Sbjct: 349 GLIVKGR--ASLTQEKEKFAHEHEEMKNLEAIVQ 380
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 57/72 (79%), Gaps = 1/72 (1%)
Query: 434 AAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPV 493
AAI F+ ILKDMAAFN+RPIIFALSNPTSKAEC+AEQ Y T GR +FASGSPFDPV
Sbjct: 391 AAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECSAEQCYKITKGRAIFASGSPFDPV 450
Query: 494 TY-KGKTFTPGQ 504
T G+T PGQ
Sbjct: 451 TLPNGQTLYPGQ 462
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/53 (77%), Positives = 46/53 (86%)
Query: 376 IRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGT 428
I+AIVVTDGERILGLGDLG GMGIPVGKL+LYTA G+ P +CLP+ LDVGT
Sbjct: 156 IKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGMNPQECLPVILDVGT 208
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Query: 141 HASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPV 200
A+LGIA L VMA++KEG ++ A KIW+VDSKGLIVK R +T K +A +H +
Sbjct: 315 EAALGIAHLIVMALEKEGLPKEKAIKKIWLVDSKGLIVKGR--ASLTQEKEKFAHEHEEM 372
Query: 201 KNLADVVKTVKPSILIGESCV 221
KNL +V+ +KP+ LIG + +
Sbjct: 373 KNLEAIVQEIKPTALIGVAAI 393
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 32/35 (91%)
Query: 750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSGEG 784
+GTASVA+AGLLA+LRITK +LSD TILFQG+GE
Sbjct: 282 QGTASVAVAGLLAALRITKNKLSDQTILFQGAGEA 316
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 29/33 (87%)
Query: 816 EDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
+DRNE+LFYR+L+ + + MPIVYTPTVGLACQ
Sbjct: 90 QDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQ 122
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 320 MAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTD--IR 377
+AF++EERQ L IHGLLP + SQ+ Q+ N + ++Y+ L L + +
Sbjct: 39 LAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNFEHLNSDFDRYLLLMDLQDRNEKLFY 98
Query: 378 AIVVTDGERIL 388
++ +D E+ +
Sbjct: 99 RVLTSDIEKFM 109
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 293 bits (750), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 132/215 (61%), Positives = 161/215 (74%)
Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
Q+ + LMPIVYTPTVGLAC +YG IFRRP+GLFISI D+GH+ ++ NWPE ++A+VV
Sbjct: 82 QDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVV 141
Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
TDGERILGLGDLG YGMGIPVGKL LYTA AGI+P QCLP+ +DVGT+ LL DP Y+G
Sbjct: 142 TDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDQCLPVCIDVGTDNIALLKDPFYMG 201
Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
L Q+R Q YDD I+EFM+A+ RYG++ LIQFEDF NH+AFRFL YR +YC FNDDI
Sbjct: 202 LYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDI 261
Query: 684 QGTXXXXXXXXXXXXRITKTRLSDNTILFQGAGEG 718
QGT ++ +S++ ILF GAGE
Sbjct: 262 QGTAAVALAGLLAAQKVISKPISEHKILFLGAGEA 296
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 91/190 (47%), Gaps = 62/190 (32%)
Query: 301 HYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDP 360
H +K P+ L GMAF+++ERQ LG+ GLLP +++QD Q N+ + P
Sbjct: 1 HIKEKGKPLM-LNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSP 59
Query: 361 LNKYIYLQALAVKTD--------------------------------------------- 375
L KYIY+ + + +
Sbjct: 60 LEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISIS 119
Query: 376 ----IRAIV------------VTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQC 419
+R+IV VTDGERILGLGDLG YGMGIPVGKL LYTA AGI+P QC
Sbjct: 120 DRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDQC 179
Query: 420 LPITLDVGTN 429
LP+ +DVGT+
Sbjct: 180 LPVCIDVGTD 189
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
Query: 438 QVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTY-K 496
++FT D+++ MA+ N+RP+IFALSNPT++AECTAE+AY T+GR +FASGSPF PV
Sbjct: 378 RLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTD 437
Query: 497 GKTFTPGQEYVVELMP 512
G+ FTPGQ V + P
Sbjct: 438 GRVFTPGQGNNVYIFP 453
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 60/97 (61%), Gaps = 5/97 (5%)
Query: 6 RITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRP 65
++ +S++ ILF GAGEA+LGIA+L VM+M + G SEQ+A+ KIWM D GL+VK R
Sbjct: 277 KVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGR- 335
Query: 66 EGGVTGHK---VHYAKKHAPVKNLADVVKTVKPSILI 99
+ + ++ H A + P D V +KPS +I
Sbjct: 336 KAKIDSYQEPFTHSAPESIP-DTFEDAVNILKPSTII 371
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 232 RITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR 290
++ +S++ ILF GAGEA+LGIA+L VM+M + G SEQ+A+ KIWM D GL+VK R
Sbjct: 277 KVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGR 335
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 141 HASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHK---VHYAKKH 197
A+LGIA+L VM+M + G SEQ+A+ KIWM D GL+VK R + + ++ H A +
Sbjct: 295 EAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGR-KAKIDSYQEPFTHSAPES 353
Query: 198 APVKNLADVVKTVKPSILIG 217
P D V +KPS +IG
Sbjct: 354 IP-DTFEDAVNILKPSTIIG 372
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 28/32 (87%)
Query: 816 EDRNERLFYRLLSEYVVELMPIVYTPTVGLAC 847
++RNE+LFYR+L + + LMPIVYTPTVGLAC
Sbjct: 70 QERNEKLFYRILQDDIESLMPIVYTPTVGLAC 101
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 283 bits (723), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 128/215 (59%), Positives = 157/215 (73%)
Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
Q+ + L PIVYTPTVGLAC +YG IFRRP+GLFISI D+GH+ ++ NWPE ++A+VV
Sbjct: 101 QDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVV 160
Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
TDGERILGLGDLG YG GIPVGKL LYTA AGI+P +CLP+ +DVGT+ LL DP Y G
Sbjct: 161 TDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXG 220
Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
L Q+R Q YDD I+EF +A+ RYG++ LIQFEDF NH+AFRFL YR +YC FNDDI
Sbjct: 221 LYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDI 280
Query: 684 QGTXXXXXXXXXXXXRITKTRLSDNTILFQGAGEG 718
QGT ++ +S++ ILF GAGE
Sbjct: 281 QGTAAVALAGLLAAQKVISKPISEHKILFLGAGEA 315
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
Query: 438 QVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTY-K 496
++FT D+++ A+ N+RP+IFALSNPT++AECTAE+AY T+GR +FASGSPF PV
Sbjct: 397 RLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTD 456
Query: 497 GKTFTPGQEYVVELMP 512
G+ FTPGQ V + P
Sbjct: 457 GRVFTPGQGNNVYIFP 472
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 373 KTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
+ ++A+VVTDGERILGLGDLG YG GIPVGKL LYTA AGI+P +CLP+ +DVGT+
Sbjct: 152 ENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTD 208
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 6 RITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRP 65
++ +S++ ILF GAGEA+LGIA+L V + + G SEQ+A+ KIW D GL+VK R
Sbjct: 296 KVISKPISEHKILFLGAGEAALGIANLIVXSXVENGLSEQEAQKKIWXFDKYGLLVKGR- 354
Query: 66 EGGVTGHK---VHYAKKHAPVKNLADVVKTVKPSILI 99
+ + ++ H A + P D V +KPS +I
Sbjct: 355 KAKIDSYQEPFTHSAPESIP-DTFEDAVNILKPSTII 390
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%)
Query: 232 RITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR 290
++ +S++ ILF GAGEA+LGIA+L V + + G SEQ+A+ KIW D GL+VK R
Sbjct: 296 KVISKPISEHKILFLGAGEAALGIANLIVXSXVENGLSEQEAQKKIWXFDKYGLLVKGR 354
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 141 HASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHK---VHYAKKH 197
A+LGIA+L V + + G SEQ+A+ KIW D GL+VK R + + ++ H A +
Sbjct: 314 EAALGIANLIVXSXVENGLSEQEAQKKIWXFDKYGLLVKGR-KAKIDSYQEPFTHSAPES 372
Query: 198 APVKNLADVVKTVKPSILIG 217
P D V +KPS +IG
Sbjct: 373 IP-DTFEDAVNILKPSTIIG 391
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 300 VHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYED 359
+H +K P+ L G AF+++ERQ LG+ GLLP +++QD Q N+ +
Sbjct: 19 LHIKEKGKPLX-LNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTS 77
Query: 360 PLNKYIYLQALAVKTD 375
PL KYIY+ + + +
Sbjct: 78 PLEKYIYIXGIQERNE 93
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 816 EDRNERLFYRLLSEYVVELMPIVYTPTVGLAC 847
++RNE+LFYR+L + + L PIVYTPTVGLAC
Sbjct: 89 QERNEKLFYRILQDDIESLXPIVYTPTVGLAC 120
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 282 bits (722), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 128/215 (59%), Positives = 157/215 (73%)
Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
Q+ + L PIVYTPTVGLAC +YG IFRRP+GLFISI D+GH+ ++ NWPE ++A+VV
Sbjct: 101 QDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVV 160
Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
TDGERILGLGDLG YG GIPVGKL LYTA AGI+P +CLP+ +DVGT+ LL DP Y G
Sbjct: 161 TDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXG 220
Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
L Q+R Q YDD I+EF +A+ RYG++ LIQFEDF NH+AFRFL YR +YC FNDDI
Sbjct: 221 LYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDI 280
Query: 684 QGTXXXXXXXXXXXXRITKTRLSDNTILFQGAGEG 718
QGT ++ +S++ ILF GAGE
Sbjct: 281 QGTAAVALAGLLAAQKVISKPISEHKILFLGAGEA 315
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
Query: 438 QVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYK- 496
++FT D+++ A+ N+RP+IFALSNPT++AECTAE+AY T+GR +FASGSPF PV
Sbjct: 397 RLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTD 456
Query: 497 GKTFTPGQEYVVELMP 512
G+ FTPGQ V + P
Sbjct: 457 GRVFTPGQGNNVYIFP 472
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 373 KTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
+ ++A+VVTDGERILGLGDLG YG GIPVGKL LYTA AGI+P +CLP+ +DVGT+
Sbjct: 152 ENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTD 208
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 6 RITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRP 65
++ +S++ ILF GAGEA+LGIA+L V + + G SEQ+A+ KIW D GL+VK R
Sbjct: 296 KVISKPISEHKILFLGAGEAALGIANLIVXSXVENGLSEQEAQKKIWXFDKYGLLVKGR- 354
Query: 66 EGGVTGHK---VHYAKKHAPVKNLADVVKTVKPSILI 99
+ + ++ H A + P D V +KPS +I
Sbjct: 355 KAKIDSYQEPFTHSAPESIP-DTFEDAVNILKPSTII 390
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%)
Query: 232 RITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR 290
++ +S++ ILF GAGEA+LGIA+L V + + G SEQ+A+ KIW D GL+VK R
Sbjct: 296 KVISKPISEHKILFLGAGEAALGIANLIVXSXVENGLSEQEAQKKIWXFDKYGLLVKGR 354
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 141 HASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHK---VHYAKKH 197
A+LGIA+L V + + G SEQ+A+ KIW D GL+VK R + + ++ H A +
Sbjct: 314 EAALGIANLIVXSXVENGLSEQEAQKKIWXFDKYGLLVKGR-KAKIDSYQEPFTHSAPES 372
Query: 198 APVKNLADVVKTVKPSILIG 217
P D V +KPS +IG
Sbjct: 373 IP-DTFEDAVNILKPSTIIG 391
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 300 VHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYED 359
+H +K P+ L G AF+++ERQ LG+ GLLP +++QD Q N+ +
Sbjct: 19 LHIKEKGKPLX-LNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTS 77
Query: 360 PLNKYIYLQALAVKTD 375
PL KYIY+ + + +
Sbjct: 78 PLEKYIYIXGIQERNE 93
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 816 EDRNERLFYRLLSEYVVELMPIVYTPTVGLAC 847
++RNE+LFYR+L + + L PIVYTPTVGLAC
Sbjct: 89 QERNEKLFYRILQDDIESLXPIVYTPTVGLAC 120
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 282 bits (722), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 128/215 (59%), Positives = 157/215 (73%)
Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
Q+ + L PIVYTPTVGLAC +YG IFRRP+GLFISI D+GH+ ++ NWPE ++A+VV
Sbjct: 81 QDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVV 140
Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
TDGERILGLGDLG YG GIPVGKL LYTA AGI+P +CLP+ +DVGT+ LL DP Y G
Sbjct: 141 TDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXG 200
Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
L Q+R Q YDD I+EF +A+ RYG++ LIQFEDF NH+AFRFL YR +YC FNDDI
Sbjct: 201 LYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDI 260
Query: 684 QGTXXXXXXXXXXXXRITKTRLSDNTILFQGAGEG 718
QGT ++ +S++ ILF GAGE
Sbjct: 261 QGTAAVALAGLLAAQKVISKPISEHKILFLGAGEA 295
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
Query: 438 QVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTY-K 496
++FT D+++ A+ N+RP+IFALSNPT++AECTAE+AY T+GR +FASGSPF PV
Sbjct: 377 RLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTD 436
Query: 497 GKTFTPGQEYVVELMP 512
G+ FTPGQ V + P
Sbjct: 437 GRVFTPGQGNNVYIFP 452
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/54 (74%), Positives = 48/54 (88%)
Query: 376 IRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
++A+VVTDGERILGLGDLG YG GIPVGKL LYTA AGI+P +CLP+ +DVGT+
Sbjct: 135 VKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTD 188
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 6 RITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRP 65
++ +S++ ILF GAGEA+LGIA+L V + + G SEQ+A+ KIW D GL+VK R
Sbjct: 276 KVISKPISEHKILFLGAGEAALGIANLIVXSXVENGLSEQEAQKKIWXFDKYGLLVKGR- 334
Query: 66 EGGVTGHK---VHYAKKHAPVKNLADVVKTVKPSILI 99
+ + ++ H A + P D V +KPS +I
Sbjct: 335 KAKIDSYQEPFTHSAPESIP-DTFEDAVNILKPSTII 370
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%)
Query: 232 RITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR 290
++ +S++ ILF GAGEA+LGIA+L V + + G SEQ+A+ KIW D GL+VK R
Sbjct: 276 KVISKPISEHKILFLGAGEAALGIANLIVXSXVENGLSEQEAQKKIWXFDKYGLLVKGR 334
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 141 HASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHK---VHYAKKH 197
A+LGIA+L V + + G SEQ+A+ KIW D GL+VK R + + ++ H A +
Sbjct: 294 EAALGIANLIVXSXVENGLSEQEAQKKIWXFDKYGLLVKGR-KAKIDSYQEPFTHSAPES 352
Query: 198 APVKNLADVVKTVKPSILIG 217
P D V +KPS +IG
Sbjct: 353 IP-DTFEDAVNILKPSTIIG 371
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 816 EDRNERLFYRLLSEYVVELMPIVYTPTVGLAC 847
++RNE+LFYR+L + + L PIVYTPTVGLAC
Sbjct: 69 QERNEKLFYRILQDDIESLXPIVYTPTVGLAC 100
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 319 GMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTD 375
G AF+++ERQ LG+ GLLP +++QD Q N+ + PL KYIY+ + + +
Sbjct: 17 GXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIYIXGIQERNE 73
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 282 bits (721), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 128/215 (59%), Positives = 157/215 (73%)
Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
Q+ + L PIVYTPTVGLAC +YG IFRRP+GLFISI D+GH+ ++ NWPE ++A+VV
Sbjct: 79 QDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVV 138
Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
TDGERILGLGDLG YG GIPVGKL LYTA AGI+P +CLP+ +DVGT+ LL DP Y G
Sbjct: 139 TDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXG 198
Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
L Q+R Q YDD I+EF +A+ RYG++ LIQFEDF NH+AFRFL YR +YC FNDDI
Sbjct: 199 LYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDI 258
Query: 684 QGTXXXXXXXXXXXXRITKTRLSDNTILFQGAGEG 718
QGT ++ +S++ ILF GAGE
Sbjct: 259 QGTAAVALAGLLAAQKVISKPISEHKILFLGAGEA 293
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
Query: 438 QVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTY-K 496
++FT D+++ A+ N+RP+IFALSNPT++AECTAE+AY T+GR +FASGSPF PV
Sbjct: 375 RLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTD 434
Query: 497 GKTFTPGQEYVVELMP 512
G+ FTPGQ V + P
Sbjct: 435 GRVFTPGQGNNVYIFP 450
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/54 (74%), Positives = 48/54 (88%)
Query: 376 IRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
++A+VVTDGERILGLGDLG YG GIPVGKL LYTA AGI+P +CLP+ +DVGT+
Sbjct: 133 VKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTD 186
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 6 RITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRP 65
++ +S++ ILF GAGEA+LGIA+L V + + G SEQ+A+ KIW D GL+VK R
Sbjct: 274 KVISKPISEHKILFLGAGEAALGIANLIVXSXVENGLSEQEAQKKIWXFDKYGLLVKGR- 332
Query: 66 EGGVTGHK---VHYAKKHAPVKNLADVVKTVKPSILI 99
+ + ++ H A + P D V +KPS +I
Sbjct: 333 KAKIDSYQEPFTHSAPESIP-DTFEDAVNILKPSTII 368
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%)
Query: 232 RITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR 290
++ +S++ ILF GAGEA+LGIA+L V + + G SEQ+A+ KIW D GL+VK R
Sbjct: 274 KVISKPISEHKILFLGAGEAALGIANLIVXSXVENGLSEQEAQKKIWXFDKYGLLVKGR 332
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 141 HASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHK---VHYAKKH 197
A+LGIA+L V + + G SEQ+A+ KIW D GL+VK R + + ++ H A +
Sbjct: 292 EAALGIANLIVXSXVENGLSEQEAQKKIWXFDKYGLLVKGR-KAKIDSYQEPFTHSAPES 350
Query: 198 APVKNLADVVKTVKPSILIG 217
P D V +KPS +IG
Sbjct: 351 IP-DTFEDAVNILKPSTIIG 369
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 816 EDRNERLFYRLLSEYVVELMPIVYTPTVGLAC 847
++RNE+LFYR+L + + L PIVYTPTVGLAC
Sbjct: 67 QERNEKLFYRILQDDIESLXPIVYTPTVGLAC 98
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 319 GMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTD 375
G AF+++ERQ LG+ GLLP +++QD Q N+ + PL KYIY+ + + +
Sbjct: 15 GXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIYIXGIQERNE 71
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 274 bits (701), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 127/217 (58%), Positives = 159/217 (73%), Gaps = 2/217 (0%)
Query: 505 EYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKG--HISEVLRNWPETDIRAIV 562
++V ELMPIVYTPTVGLACQ +G I+R+P+GL+I+I+D I ++L NW E D+RAIV
Sbjct: 116 DHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIV 175
Query: 563 VTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYI 622
VTDGERILGLGDLGAYG+GIPVGKL+LY AL G++P CLP+ LDVGTN LL+DP YI
Sbjct: 176 VTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYI 235
Query: 623 GLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDD 682
GLR +R G+ YD ++ FM+A +YGQ LIQFEDFAN +AFR LD Y+++Y +FNDD
Sbjct: 236 GLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDD 295
Query: 683 IQGTXXXXXXXXXXXXRITKTRLSDNTILFQGAGEGT 719
IQGT R+TK +S LF GAG +
Sbjct: 296 IQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAAS 332
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 51/57 (89%)
Query: 373 KTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
+ D+RAIVVTDGERILGLGDLGAYG+GIPVGKL+LY AL G++P CLP+ LDVGTN
Sbjct: 168 EEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTN 224
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 51/72 (70%)
Query: 433 AAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDP 492
A+ + F ++++ MA N+RPIIFALSNPTSKAECTAE+AY T+G ++ASGSPF
Sbjct: 405 ASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPN 464
Query: 493 VTYKGKTFTPGQ 504
G T+ PGQ
Sbjct: 465 FELNGHTYKPGQ 476
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
LL R+TK +S LF GAG AS GIA++ V MQ EG S+++A ++I+++D GL+
Sbjct: 307 LLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLV 366
Query: 61 VKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILI 99
K+R E + V +AK ++ +V++ +P LI
Sbjct: 367 TKNRKE--MNPRHVQFAKDMPETTSILEVIRAARPGALI 403
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
VAGLL R+TK +S LF GAG AS GIA++ V MQ EG S+++A ++I+++D
Sbjct: 304 VAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDID 363
Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTG 319
GL+ K+R E + V +AK ++ +V++
Sbjct: 364 GLVTKNRKE--MNPRHVQFAKDMPETTSILEVIRAA 397
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
Query: 799 ITKTRLSDNTI--LFQGAG-EDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
ITK R N + Q G +DRNE+LFYR++ ++V ELMPIVYTPTVGLACQ
Sbjct: 83 ITKLREQPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQ 135
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVK 201
AS GIA++ V MQ EG S+++A ++I+++D GL+ K+R E + V +AK
Sbjct: 331 ASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKE--MNPRHVQFAKDMPETT 388
Query: 202 NLADVVKTVKPSILIGESCV 221
++ +V++ +P LIG S V
Sbjct: 389 SILEVIRAARPGALIGASTV 408
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 298 HKVHYAKKHAPVKNLADVVK-----TGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKL 352
+K++ ++ P K A+++K GM FS+ ERQ LG+HGLLP A +Q++Q +
Sbjct: 25 YKLYRPERVTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVIT 84
Query: 353 NVDRYEDPLNKYIYLQAL 370
+ + L +YI L L
Sbjct: 85 KLREQPNDLARYIQLDGL 102
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 737 RLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGT 785
+ D +F +GTASV +AGLL R+TK +S LF G+G +
Sbjct: 284 KYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAAS 332
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|B Chain B, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|C Chain C, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|D Chain D, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
Length = 439
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 84/212 (39%), Gaps = 52/212 (24%)
Query: 509 ELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGER 568
E + + YTP V C++ I R P G KG++ VV+DG R
Sbjct: 32 EELTLAYTPGVAEPCKE---IARDP-GKVYEYTSKGNL-------------VAVVSDGSR 74
Query: 569 ILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
ILGLG++G G+PV GK L+ G+ PI +
Sbjct: 75 ILGLGNIGPLA-GLPVMEGKALLFKRFGGV---DAFPIMI-------------------- 110
Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRY--CVFNDDIQ 684
Q + FI + ++A+ +G I ED A+ F L+ R VF+DD Q
Sbjct: 111 ---KEQEPNKFI-DIVKAIAPTFGG---INLEDIASPKCFYILERLREELDIPVFHDDQQ 163
Query: 685 GTXXXXXXXXXXXXRITKTRLSDNTILFQGAG 716
GT ++ ++S+ T+ GAG
Sbjct: 164 GTAAVVLAGLLNALKVVGKKISEITLALFGAG 195
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 380 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITL 424
VV+DG RILGLG++G G+PV GK L+ G+ PI +
Sbjct: 68 VVSDGSRILGLGNIGPLA-GLPVMEGKALLFKRFGGV---DAFPIMI 110
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 744 LFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSG 782
+F +GTA+V +AGLL +L++ ++S+ T+ G+G
Sbjct: 157 VFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAG 195
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
pdb|1WW8|B Chain B, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
Length = 439
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 86/212 (40%), Gaps = 52/212 (24%)
Query: 509 ELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGER 568
E + + YTP V C++ I R P G KG++ VV+DG R
Sbjct: 32 EELTLAYTPGVAEPCKE---IARDP-GKVYEYTSKGNL-------------VAVVSDGSR 74
Query: 569 ILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
ILGLG++G G+PV GK L+ G+ D I +++
Sbjct: 75 ILGLGNIGPLA-GLPVXEGKALLFKRFGGV---------------------DAFPIXIKE 112
Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRY--CVFNDDIQ 684
Q + FI + ++A+ +G I ED A+ F L+ R VF+DD Q
Sbjct: 113 -----QEPNKFI-DIVKAIAPTFGG---INLEDIASPKCFYILERLREELDIPVFHDDQQ 163
Query: 685 GTXXXXXXXXXXXXRITKTRLSDNTILFQGAG 716
GT ++ ++S+ T+ GAG
Sbjct: 164 GTAAVVLAGLLNALKVVGKKISEITLALFGAG 195
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 380 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITL 424
VV+DG RILGLG++G G+PV GK L+ G+ PI +
Sbjct: 68 VVSDGSRILGLGNIGPLA-GLPVXEGKALLFKRFGGV---DAFPIXI 110
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 744 LFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSG 782
+F +GTA+V +AGLL +L++ ++S+ T+ G+G
Sbjct: 157 VFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAG 195
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 562 VVTDGERILGLGDLGAYG-MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPL 620
VV+D R+LG GD+ G +G+ GK L L GI +PI +D + ++ +DP
Sbjct: 95 VVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGI---DAVPICID--SKNKEGKNDP- 148
Query: 621 YIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYC--- 677
D + EF+Q + +G I ED + + ++ LD R C
Sbjct: 149 ---------------DAVIEFVQRIQHTFGA---INLEDISQPNCYKILDVLRES-CDIP 189
Query: 678 VFNDDIQGTXXXXXXXXXXXXRITKTRLSDNTILFQGAG 716
V++DD QGT ++ K + + ++F GAG
Sbjct: 190 VWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAG 228
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTXXXXXXXXXXXXRITKTRLSDNTI 809
+GTASV +AGLL +L++ K + + ++F G+G K + D+
Sbjct: 196 QGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKG 255
Query: 810 LFQGAGED-RNERLFYR 825
ED + + FYR
Sbjct: 256 SLHNGREDIKKDTRFYR 272
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 35/159 (22%)
Query: 562 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 619
VV+DG +LGLG++G YG +PV GK L+ A A I PI L
Sbjct: 74 VVSDGSAVLGLGNIGPYG-ALPVXEGKAFLFKAFADI---DAFPICL------------- 116
Query: 620 LYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLD--TYRNRYC 677
++ ++ I ++++ +G I ED FR L +
Sbjct: 117 -----------SESEEEKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEEXNIP 162
Query: 678 VFNDDIQGTXXXXXXXXXXXXRITKTRLSDNTILFQGAG 716
VF+DD QGT ++T+ ++ + ++ G G
Sbjct: 163 VFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIG 201
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 358 EDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIK 415
EDP Y+Y VV+DG +LGLG++G YG +PV GK L+ A A I
Sbjct: 57 EDPEKTYVYTSRWNT-----VAVVSDGSAVLGLGNIGPYG-ALPVXEGKAFLFKAFADI- 109
Query: 416 PHQCLPITL 424
PI L
Sbjct: 110 --DAFPICL 116
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 35/159 (22%)
Query: 562 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 619
VV+DG +LGLG++G YG +PV GK L+ A A I PI L
Sbjct: 64 VVSDGSAVLGLGNIGPYG-ALPVMEGKAFLFKAFADI---DAFPICL------------- 106
Query: 620 LYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLD--TYRNRYC 677
++ ++ I ++++ +G I ED FR L +
Sbjct: 107 -----------SESEEEKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEEMNIP 152
Query: 678 VFNDDIQGTXXXXXXXXXXXXRITKTRLSDNTILFQGAG 716
VF+DD QGT ++T+ ++ + ++ G G
Sbjct: 153 VFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIG 191
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 358 EDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIK 415
EDP Y+Y VV+DG +LGLG++G YG +PV GK L+ A A I
Sbjct: 47 EDPEKTYVYTSRWNT-----VAVVSDGSAVLGLGNIGPYG-ALPVMEGKAFLFKAFADI- 99
Query: 416 PHQCLPITL 424
PI L
Sbjct: 100 --DAFPICL 106
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 35/159 (22%)
Query: 562 VVTDGERILGLGDLGA-YGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPL 620
V++DG +LGLGD+G M + GK +L+ A AG+ +PI LD +T++++
Sbjct: 70 VISDGTAVLGLGDIGPEAAMPVMEGKAALFKAFAGV---DAIPIVLDT-KDTEEII---- 121
Query: 621 YIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYC--- 677
++A+ +G I ED + F ++ + C
Sbjct: 122 -------------------SIVKALAPTFGG---INLEDISAPRCFE-IEQRLIKECHIP 158
Query: 678 VFNDDIQGTXXXXXXXXXXXXRITKTRLSDNTILFQGAG 716
VF+DD GT ++ K L + +I+ G G
Sbjct: 159 VFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGG 197
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 380 VVTDGERILGLGDLGA-YGMGIPVGKLSLYTALAGIKPHQCLPITLD 425
V++DG +LGLGD+G M + GK +L+ A AG+ +PI LD
Sbjct: 70 VISDGTAVLGLGDIGPEAAMPVMEGKAALFKAFAGV---DAIPIVLD 113
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 15/137 (10%)
Query: 272 DARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAK--KHAPVKNLADVVKTGM-AFSIEERQ 328
D + W DSKG GG T K YA K + +K L +V+ T + AFSI
Sbjct: 81 DCQGSRWW-DSKG------SNGGKTKPKFFYAHSLKSSNIKGL-NVLNTPVQAFSINSAT 132
Query: 329 ALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERIL 388
LG++ ++ H N D ++ + +Y+ VK + + G I
Sbjct: 133 TLGVYDVIIDNSAGDSAGGH----NTDAFDVGSSTGVYISGANVKNQDDCLAINSGTNIT 188
Query: 389 GLGDLGAYGMGIPVGKL 405
G + G G+ +G +
Sbjct: 189 FTGGTCSGGHGLSIGSV 205
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 16/124 (12%)
Query: 297 GHKVH-YAKKHAPVKNLADVVKTGMAFSIE-ERQALGIHGLLPAAVKSQDEQLHLCKLNV 354
G K H + +KHAP+++ ++ + + E L + + A VK+ D L L +L
Sbjct: 190 GAKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTL-ELED 248
Query: 355 DRYE-----------DPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVG 403
R E +P N I L+A VKT+ + +V D + + G Y +G G
Sbjct: 249 GRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIE--GIYAVGDNTG 306
Query: 404 KLSL 407
+ L
Sbjct: 307 AVEL 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,253,666
Number of Sequences: 62578
Number of extensions: 1046318
Number of successful extensions: 2359
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2222
Number of HSP's gapped (non-prelim): 122
length of query: 848
length of database: 14,973,337
effective HSP length: 107
effective length of query: 741
effective length of database: 8,277,491
effective search space: 6133620831
effective search space used: 6133620831
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)