Query psy14377
Match_columns 848
No_of_seqs 467 out of 2839
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 18:18:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257|consensus 100.0 2E-106 4E-111 891.1 17.7 357 306-785 29-401 (582)
2 PRK13529 malate dehydrogenase; 100.0 6E-104 1E-108 889.7 24.5 358 307-789 16-399 (563)
3 PLN03129 NADP-dependent malic 100.0 8E-104 2E-108 891.0 24.3 359 307-788 41-417 (581)
4 PTZ00317 NADP-dependent malic 100.0 4E-103 8E-108 882.8 24.2 357 307-787 18-396 (559)
5 PTZ00317 NADP-dependent malic 100.0 5.2E-66 1.1E-70 582.0 20.6 260 172-553 234-496 (559)
6 PRK13529 malate dehydrogenase; 100.0 9.7E-66 2.1E-70 580.2 19.3 265 170-553 230-497 (563)
7 PLN03129 NADP-dependent malic 100.0 1.9E-65 4.2E-70 579.4 19.0 245 185-553 268-516 (581)
8 PF03949 Malic_M: Malic enzyme 100.0 1.4E-65 3.1E-70 535.5 13.4 221 215-553 1-221 (255)
9 PF00390 malic: Malic enzyme, 100.0 3.8E-67 8.3E-72 522.9 0.7 172 502-673 11-182 (182)
10 KOG1257|consensus 100.0 1.2E-64 2.5E-69 559.8 20.0 235 199-553 267-504 (582)
11 cd00762 NAD_bind_malic_enz NAD 100.0 2.6E-63 5.6E-68 518.0 19.2 221 215-553 1-221 (254)
12 cd05312 NAD_bind_1_malic_enz N 100.0 2.4E-63 5.1E-68 524.4 18.9 220 215-553 1-220 (279)
13 COG0281 SfcA Malic enzyme [Ene 100.0 1.5E-57 3.3E-62 497.1 16.7 237 502-787 38-283 (432)
14 PRK12861 malic enzyme; Reviewe 100.0 1E-57 2.2E-62 532.2 13.5 235 504-787 30-271 (764)
15 COG0281 SfcA Malic enzyme [Ene 100.0 2.3E-56 4.9E-61 487.9 15.7 303 101-555 37-370 (432)
16 PRK12862 malic enzyme; Reviewe 100.0 3E-56 6.4E-61 522.6 14.9 299 103-553 33-359 (763)
17 PRK07232 bifunctional malic en 100.0 5E-56 1.1E-60 518.4 15.7 300 103-554 25-352 (752)
18 PRK12861 malic enzyme; Reviewe 100.0 1.5E-55 3.3E-60 514.0 14.3 299 103-553 29-355 (764)
19 PRK07232 bifunctional malic en 100.0 2.1E-55 4.6E-60 513.2 14.5 235 503-787 25-267 (752)
20 PRK12862 malic enzyme; Reviewe 100.0 2.1E-55 4.6E-60 515.4 14.1 235 504-787 34-275 (763)
21 cd05312 NAD_bind_1_malic_enz N 100.0 4.3E-42 9.4E-47 363.2 6.6 196 1-206 12-261 (279)
22 PF03949 Malic_M: Malic enzyme 100.0 8.7E-43 1.9E-47 364.5 1.2 184 1-195 12-248 (255)
23 cd00762 NAD_bind_malic_enz NAD 100.0 3E-41 6.5E-46 352.7 8.2 183 1-195 12-248 (254)
24 cd05311 NAD_bind_2_malic_enz N 100.0 1E-32 2.2E-37 284.1 15.0 194 215-553 1-194 (226)
25 cd05311 NAD_bind_2_malic_enz N 99.9 1.2E-25 2.6E-30 231.9 7.6 163 1-182 12-210 (226)
26 PF00390 malic: Malic enzyme, 99.4 9.5E-14 2.1E-18 140.2 0.3 59 373-431 64-122 (182)
27 cd05191 NAD_bind_amino_acid_DH 97.4 0.0021 4.5E-08 57.3 11.1 55 217-282 1-55 (86)
28 cd05191 NAD_bind_amino_acid_DH 97.1 0.0017 3.6E-08 57.9 7.2 55 685-741 1-55 (86)
29 PRK14031 glutamate dehydrogena 95.6 0.07 1.5E-06 61.7 10.5 121 629-753 134-271 (444)
30 PRK09754 phenylpropionate diox 95.4 0.24 5.2E-06 55.3 13.6 45 13-66 2-46 (396)
31 PRK05476 S-adenosyl-L-homocyst 95.1 0.12 2.5E-06 59.6 10.3 93 675-782 173-276 (425)
32 PLN02477 glutamate dehydrogena 94.6 0.25 5.4E-06 56.7 11.4 118 629-749 112-247 (410)
33 PRK09414 glutamate dehydrogena 94.6 0.2 4.4E-06 58.0 10.6 118 629-749 138-273 (445)
34 PRK14030 glutamate dehydrogena 94.1 0.35 7.6E-06 56.1 11.2 117 629-748 134-268 (445)
35 PTZ00079 NADP-specific glutama 93.3 0.54 1.2E-05 54.7 10.9 117 629-748 143-277 (454)
36 PRK14982 acyl-ACP reductase; P 93.0 0.23 5E-06 55.7 7.2 103 652-782 119-224 (340)
37 PRK12549 shikimate 5-dehydroge 91.7 0.37 8.1E-06 52.4 6.6 55 219-283 106-160 (284)
38 PRK12749 quinate/shikimate deh 89.9 0.68 1.5E-05 50.6 6.6 54 219-282 103-156 (288)
39 TIGR02374 nitri_red_nirB nitri 89.4 2.9 6.2E-05 51.7 12.1 42 17-66 1-42 (785)
40 cd00401 AdoHcyase S-adenosyl-L 89.3 0.96 2.1E-05 52.1 7.5 87 681-782 179-266 (413)
41 cd05211 NAD_bind_Glu_Leu_Phe_V 89.0 0.84 1.8E-05 48.1 6.2 60 686-747 2-62 (217)
42 cd01065 NAD_bind_Shikimate_DH 89.0 1.1 2.4E-05 42.9 6.6 50 223-282 2-51 (155)
43 PF00208 ELFV_dehydrog: Glutam 89.0 1 2.2E-05 48.3 6.9 108 681-792 5-133 (244)
44 PLN02494 adenosylhomocysteinas 88.9 1 2.2E-05 52.8 7.4 86 681-781 231-317 (477)
45 TIGR01809 Shik-DH-AROM shikima 88.7 0.9 2E-05 49.3 6.4 54 219-282 102-157 (282)
46 TIGR01035 hemA glutamyl-tRNA r 88.6 1.9 4.1E-05 49.4 9.2 48 224-282 165-212 (417)
47 PF01488 Shikimate_DH: Shikima 88.5 0.76 1.7E-05 44.4 5.1 36 237-282 9-44 (135)
48 PRK14027 quinate/shikimate deh 88.4 0.98 2.1E-05 49.3 6.4 54 219-282 106-159 (283)
49 cd01078 NAD_bind_H4MPT_DH NADP 88.3 1.3 2.8E-05 44.7 6.9 91 686-786 7-110 (194)
50 COG0373 HemA Glutamyl-tRNA red 87.8 0.89 1.9E-05 52.4 5.9 112 663-788 139-253 (414)
51 cd05211 NAD_bind_Glu_Leu_Phe_V 87.7 1.6 3.5E-05 45.9 7.3 56 224-289 7-62 (217)
52 PRK12548 shikimate 5-dehydroge 87.6 1.2 2.6E-05 48.4 6.5 54 219-282 105-158 (289)
53 COG0334 GdhA Glutamate dehydro 87.5 3 6.4E-05 48.2 9.7 123 627-753 110-250 (411)
54 PRK14192 bifunctional 5,10-met 87.3 1.1 2.4E-05 49.1 6.0 72 687-782 139-211 (283)
55 PRK00258 aroE shikimate 5-dehy 87.2 1.4 3E-05 47.6 6.6 54 219-282 101-155 (278)
56 cd05313 NAD_bind_2_Glu_DH NAD( 86.5 1.7 3.7E-05 47.2 6.8 63 685-749 16-79 (254)
57 cd01080 NAD_bind_m-THF_DH_Cycl 86.3 1.3 2.9E-05 44.9 5.6 72 688-784 26-98 (168)
58 PF01488 Shikimate_DH: Shikima 85.9 1.4 3.1E-05 42.5 5.3 36 11-56 9-44 (135)
59 KOG0685|consensus 85.7 0.96 2.1E-05 52.9 4.7 39 7-55 14-52 (498)
60 PLN00106 malate dehydrogenase 85.5 8.6 0.00019 43.1 11.9 49 226-284 5-54 (323)
61 KOG0029|consensus 85.4 1 2.3E-05 53.0 5.0 37 10-57 11-47 (501)
62 cd01078 NAD_bind_H4MPT_DH NADP 85.2 2.6 5.7E-05 42.6 7.1 48 224-282 12-60 (194)
63 cd01065 NAD_bind_Shikimate_DH 84.5 2.3 4.9E-05 40.8 6.0 87 692-786 4-94 (155)
64 TIGR00936 ahcY adenosylhomocys 84.4 2.5 5.4E-05 48.8 7.2 54 681-740 172-225 (406)
65 PF07992 Pyr_redox_2: Pyridine 84.4 1.7 3.6E-05 42.8 5.2 32 16-58 1-32 (201)
66 PF00670 AdoHcyase_NAD: S-aden 84.2 1.8 3.9E-05 44.2 5.4 85 684-783 3-88 (162)
67 PF13738 Pyr_redox_3: Pyridine 83.7 1.3 2.8E-05 43.9 4.0 27 236-262 163-189 (203)
68 PF00899 ThiF: ThiF family; I 83.6 1.7 3.7E-05 41.6 4.7 37 239-285 1-37 (135)
69 cd01076 NAD_bind_1_Glu_DH NAD( 82.5 3.8 8.2E-05 43.5 7.2 57 224-290 15-71 (227)
70 cd05213 NAD_bind_Glutamyl_tRNA 82.5 2.5 5.5E-05 46.4 6.1 110 663-786 139-251 (311)
71 COG0169 AroE Shikimate 5-dehyd 82.4 2.9 6.3E-05 46.1 6.5 54 219-282 103-158 (283)
72 cd05313 NAD_bind_2_Glu_DH NAD( 82.2 4 8.7E-05 44.4 7.4 57 224-290 22-78 (254)
73 TIGR00518 alaDH alanine dehydr 82.0 2 4.3E-05 48.6 5.2 128 12-160 165-315 (370)
74 PF01494 FAD_binding_3: FAD bi 81.9 1.9 4E-05 45.5 4.7 34 15-59 2-35 (356)
75 PRK12549 shikimate 5-dehydroge 81.7 1.9 4.2E-05 46.9 4.9 56 675-740 103-158 (284)
76 PRK12550 shikimate 5-dehydroge 81.7 3.2 6.9E-05 45.2 6.4 53 219-282 102-154 (272)
77 COG0373 HemA Glutamyl-tRNA red 81.3 5.1 0.00011 46.5 8.2 48 224-282 163-210 (414)
78 cd01076 NAD_bind_1_Glu_DH NAD( 81.3 3.6 7.7E-05 43.7 6.5 65 684-750 8-73 (227)
79 TIGR03169 Nterm_to_SelD pyridi 81.2 2.2 4.8E-05 46.7 5.1 37 240-281 145-181 (364)
80 PRK08328 hypothetical protein; 81.0 1.5 3.3E-05 46.3 3.6 38 236-283 23-60 (231)
81 TIGR02354 thiF_fam2 thiamine b 80.8 1.8 4E-05 44.9 4.1 39 236-284 17-55 (200)
82 TIGR01292 TRX_reduct thioredox 80.7 2 4.3E-05 44.8 4.4 32 16-58 2-33 (300)
83 TIGR02853 spore_dpaA dipicolin 80.5 3.2 6.9E-05 45.4 6.0 88 685-782 129-218 (287)
84 TIGR02356 adenyl_thiF thiazole 79.9 2 4.2E-05 44.4 3.9 38 236-283 17-54 (202)
85 PRK14989 nitrite reductase sub 79.7 5.9 0.00013 49.6 8.6 45 15-66 4-48 (847)
86 COG0686 Ald Alanine dehydrogen 79.7 1.1 2.5E-05 50.2 2.2 109 12-142 166-299 (371)
87 PRK12475 thiamine/molybdopteri 78.8 2.2 4.8E-05 47.8 4.2 39 236-284 20-58 (338)
88 PTZ00079 NADP-specific glutama 78.8 5.5 0.00012 46.7 7.5 67 218-298 216-282 (454)
89 PRK08644 thiamine biosynthesis 78.5 2.1 4.5E-05 44.8 3.6 38 236-283 24-61 (212)
90 PRK12749 quinate/shikimate deh 78.5 2.9 6.2E-05 45.8 4.9 55 676-740 101-155 (288)
91 cd00757 ThiF_MoeB_HesA_family 78.3 2.3 4.9E-05 44.6 3.8 38 236-283 17-54 (228)
92 TIGR02853 spore_dpaA dipicolin 78.2 7.1 0.00015 42.8 7.7 56 215-282 127-182 (287)
93 PRK14030 glutamate dehydrogena 78.2 5.7 0.00012 46.4 7.3 62 218-290 207-268 (445)
94 PRK14982 acyl-ACP reductase; P 78.1 5.8 0.00013 44.8 7.2 55 218-282 134-189 (340)
95 PRK08328 hypothetical protein; 77.9 2.4 5.3E-05 44.7 4.0 39 10-58 23-61 (231)
96 TIGR02355 moeB molybdopterin s 77.1 2.5 5.3E-05 45.1 3.8 38 236-283 20-57 (240)
97 PTZ00325 malate dehydrogenase; 77.0 14 0.00031 41.3 9.8 25 440-464 104-128 (321)
98 cd01485 E1-1_like Ubiquitin ac 77.0 2.6 5.6E-05 43.6 3.8 40 10-59 15-54 (198)
99 PRK14031 glutamate dehydrogena 76.9 6.5 0.00014 46.0 7.4 69 218-300 207-275 (444)
100 TIGR02356 adenyl_thiF thiazole 76.2 3.3 7.2E-05 42.8 4.3 40 10-59 17-56 (202)
101 PLN02477 glutamate dehydrogena 76.1 7.3 0.00016 45.1 7.4 61 218-290 185-246 (410)
102 PRK12548 shikimate 5-dehydroge 76.0 4.6 0.0001 44.0 5.6 56 675-740 102-157 (289)
103 cd01492 Aos1_SUMO Ubiquitin ac 75.9 2.7 5.9E-05 43.4 3.6 40 10-59 17-56 (197)
104 TIGR01809 Shik-DH-AROM shikima 75.7 3.7 8E-05 44.6 4.7 56 675-740 99-156 (282)
105 TIGR02355 moeB molybdopterin s 75.7 3.2 7E-05 44.2 4.2 40 10-59 20-59 (240)
106 PRK08306 dipicolinate synthase 75.2 5.3 0.00011 43.9 5.8 84 690-782 135-219 (296)
107 PRK13512 coenzyme A disulfide 75.2 3.5 7.5E-05 47.1 4.6 35 16-59 3-37 (438)
108 PRK07233 hypothetical protein; 75.2 3.3 7.2E-05 45.8 4.3 32 16-58 1-32 (434)
109 PRK12475 thiamine/molybdopteri 75.1 3.6 7.8E-05 46.1 4.6 40 10-59 20-59 (338)
110 PRK07251 pyridine nucleotide-d 75.1 3.9 8.4E-05 46.4 4.9 35 13-58 2-36 (438)
111 COG0569 TrkA K+ transport syst 75.0 1.1 2.3E-05 47.3 0.4 86 709-796 2-89 (225)
112 cd01485 E1-1_like Ubiquitin ac 75.0 2.8 6.1E-05 43.3 3.4 39 236-284 15-53 (198)
113 TIGR00507 aroE shikimate 5-deh 75.0 6.4 0.00014 42.2 6.3 51 221-282 98-148 (270)
114 PRK14175 bifunctional 5,10-met 74.7 4.9 0.00011 44.4 5.4 72 688-783 139-211 (286)
115 PRK09310 aroDE bifunctional 3- 74.5 6.1 0.00013 46.3 6.4 52 220-282 312-363 (477)
116 PRK05690 molybdopterin biosynt 74.4 3.5 7.6E-05 44.0 4.1 38 236-283 28-65 (245)
117 cd00757 ThiF_MoeB_HesA_family 74.4 3.8 8.2E-05 43.0 4.3 40 10-59 17-56 (228)
118 PF00208 ELFV_dehydrog: Glutam 74.4 6.8 0.00015 42.1 6.2 56 224-289 15-71 (244)
119 TIGR02354 thiF_fam2 thiamine b 74.2 4.1 8.9E-05 42.3 4.4 40 10-59 17-56 (200)
120 PLN02172 flavin-containing mon 74.1 4.5 9.7E-05 47.0 5.2 38 236-284 200-237 (461)
121 PRK06184 hypothetical protein; 74.0 4.2 9.1E-05 47.0 4.9 37 12-59 1-37 (502)
122 cd00401 AdoHcyase S-adenosyl-L 73.9 7.5 0.00016 45.0 6.8 53 215-282 181-233 (413)
123 cd01075 NAD_bind_Leu_Phe_Val_D 73.9 10 0.00022 39.3 7.2 49 224-283 10-60 (200)
124 PF00899 ThiF: ThiF family; I 73.8 2.8 6.1E-05 40.1 2.9 38 706-745 1-38 (135)
125 PF00070 Pyr_redox: Pyridine n 73.8 7.2 0.00016 33.9 5.2 35 16-61 1-35 (80)
126 PRK07236 hypothetical protein; 73.5 4.6 0.0001 44.8 4.9 35 12-57 4-38 (386)
127 PF13450 NAD_binding_8: NAD(P) 73.4 5.9 0.00013 34.2 4.5 30 19-59 1-30 (68)
128 PRK14192 bifunctional 5,10-met 73.4 7.3 0.00016 42.9 6.3 51 220-282 140-191 (283)
129 PRK09564 coenzyme A disulfide 73.3 4.3 9.3E-05 45.8 4.7 37 16-61 2-38 (444)
130 cd05213 NAD_bind_Glutamyl_tRNA 73.2 7.8 0.00017 42.6 6.5 48 224-282 163-210 (311)
131 PRK00258 aroE shikimate 5-dehy 72.9 5.2 0.00011 43.2 5.0 96 675-786 98-198 (278)
132 PRK08644 thiamine biosynthesis 72.8 4.1 8.8E-05 42.7 4.0 39 10-58 24-62 (212)
133 PF07992 Pyr_redox_2: Pyridine 72.7 5.4 0.00012 39.3 4.7 30 242-282 1-30 (201)
134 PRK14027 quinate/shikimate deh 72.5 5 0.00011 43.9 4.8 56 675-740 103-158 (283)
135 PRK04176 ribulose-1,5-biphosph 72.5 4.7 0.0001 43.2 4.5 35 13-58 24-58 (257)
136 PRK05732 2-octaprenyl-6-methox 72.4 4.8 0.0001 44.2 4.7 35 12-57 1-38 (395)
137 PRK11883 protoporphyrinogen ox 72.4 5 0.00011 44.8 4.9 33 16-57 2-34 (451)
138 COG0334 GdhA Glutamate dehydro 72.4 6.6 0.00014 45.5 5.8 59 4-75 197-255 (411)
139 PRK05690 molybdopterin biosynt 72.3 4.8 0.0001 43.0 4.5 39 10-58 28-66 (245)
140 PRK09414 glutamate dehydrogena 72.3 9.8 0.00021 44.6 7.3 56 224-290 216-272 (445)
141 PRK09126 hypothetical protein; 72.0 4.9 0.00011 44.3 4.6 36 13-59 2-37 (392)
142 cd01492 Aos1_SUMO Ubiquitin ac 72.0 3.4 7.3E-05 42.7 3.2 39 236-284 17-55 (197)
143 PRK04965 NADH:flavorubredoxin 71.5 6.1 0.00013 43.8 5.3 42 16-66 4-45 (377)
144 PRK08762 molybdopterin biosynt 71.4 3.7 8E-05 46.3 3.6 38 236-283 131-168 (376)
145 PRK06847 hypothetical protein; 71.3 5.4 0.00012 43.6 4.7 33 14-57 4-36 (375)
146 PRK08306 dipicolinate synthase 71.0 9 0.00019 42.1 6.3 47 226-283 138-184 (296)
147 COG5322 Predicted dehydrogenas 70.9 4.8 0.0001 44.7 4.1 120 4-142 157-280 (351)
148 PRK08163 salicylate hydroxylas 70.9 5.5 0.00012 43.9 4.7 34 13-57 3-36 (396)
149 cd01483 E1_enzyme_family Super 70.8 5.6 0.00012 38.3 4.2 34 242-285 1-34 (143)
150 cd00755 YgdL_like Family of ac 70.8 4.4 9.4E-05 43.3 3.7 39 236-284 7-45 (231)
151 TIGR02023 BchP-ChlP geranylger 70.6 5.4 0.00012 44.5 4.6 31 16-57 2-32 (388)
152 PRK07364 2-octaprenyl-6-methox 70.4 5.4 0.00012 44.3 4.5 34 14-58 18-51 (415)
153 KOG0029|consensus 69.9 3.5 7.6E-05 48.7 3.1 25 238-262 13-37 (501)
154 PRK07045 putative monooxygenas 69.5 6 0.00013 43.8 4.6 34 14-58 5-38 (388)
155 TIGR00292 thiazole biosynthesi 69.2 6 0.00013 42.5 4.4 37 12-59 19-55 (254)
156 TIGR02028 ChlP geranylgeranyl 68.8 6 0.00013 44.7 4.5 33 15-58 1-33 (398)
157 COG0644 FixC Dehydrogenases (f 68.6 6.7 0.00015 44.1 4.9 37 13-60 2-38 (396)
158 PRK07688 thiamine/molybdopteri 68.3 5.4 0.00012 44.8 4.0 38 236-283 20-57 (339)
159 PLN02520 bifunctional 3-dehydr 68.0 10 0.00022 45.0 6.4 53 219-282 348-410 (529)
160 TIGR01381 E1_like_apg7 E1-like 67.9 5.2 0.00011 48.7 4.0 40 236-285 334-373 (664)
161 PRK05597 molybdopterin biosynt 67.8 5.5 0.00012 44.9 3.9 38 236-283 24-61 (355)
162 PLN02852 ferredoxin-NADP+ redu 67.6 8.8 0.00019 45.3 5.7 40 10-58 22-61 (491)
163 PRK08849 2-octaprenyl-3-methyl 67.5 7.4 0.00016 43.2 4.9 33 14-57 3-35 (384)
164 PRK08762 molybdopterin biosynt 67.5 5.5 0.00012 45.0 3.9 39 10-58 131-169 (376)
165 PRK00045 hemA glutamyl-tRNA re 67.4 12 0.00027 42.9 6.7 48 224-282 167-214 (423)
166 PF01266 DAO: FAD dependent ox 67.1 8.8 0.00019 40.5 5.1 32 16-58 1-32 (358)
167 PRK08223 hypothetical protein; 67.1 5.8 0.00012 43.9 3.8 39 236-284 23-61 (287)
168 PF05834 Lycopene_cycl: Lycope 67.1 7.8 0.00017 43.4 4.9 40 17-65 2-43 (374)
169 cd01487 E1_ThiF_like E1_ThiF_l 66.9 7.1 0.00015 39.6 4.2 32 242-283 1-32 (174)
170 PF01946 Thi4: Thi4 family; PD 66.8 6.1 0.00013 42.5 3.8 37 13-60 16-52 (230)
171 PRK05600 thiamine biosynthesis 66.7 6.4 0.00014 44.7 4.2 39 236-284 37-75 (370)
172 PRK06753 hypothetical protein; 66.5 7.6 0.00017 42.5 4.7 32 15-57 1-32 (373)
173 PRK15116 sulfur acceptor prote 66.4 7.1 0.00015 42.7 4.3 40 236-285 26-65 (268)
174 PF13738 Pyr_redox_3: Pyridine 66.3 6.5 0.00014 38.9 3.7 30 244-283 1-30 (203)
175 PRK07608 ubiquinone biosynthes 66.3 7.4 0.00016 42.7 4.5 33 15-58 6-38 (388)
176 PRK08013 oxidoreductase; Provi 66.1 7.8 0.00017 43.4 4.7 35 13-58 2-36 (400)
177 PF03486 HI0933_like: HI0933-l 66.0 6.5 0.00014 45.2 4.2 31 16-57 2-32 (409)
178 PRK06416 dihydrolipoamide dehy 66.0 7.8 0.00017 44.2 4.8 34 14-58 4-37 (462)
179 PLN02268 probable polyamine ox 65.8 7.5 0.00016 43.8 4.5 31 16-57 2-32 (435)
180 TIGR03140 AhpF alkyl hydropero 65.7 12 0.00026 43.9 6.3 80 655-736 149-239 (515)
181 PRK14694 putative mercuric red 65.6 8.4 0.00018 44.3 5.0 37 10-57 2-38 (468)
182 PRK05597 molybdopterin biosynt 65.5 7.1 0.00015 44.0 4.3 40 10-59 24-63 (355)
183 PRK06292 dihydrolipoamide dehy 65.5 8.7 0.00019 43.7 5.0 33 13-56 2-34 (460)
184 PRK05476 S-adenosyl-L-homocyst 65.4 18 0.00038 42.2 7.5 52 216-282 192-243 (425)
185 cd00755 YgdL_like Family of ac 65.3 6.9 0.00015 41.8 3.9 40 10-59 7-46 (231)
186 PRK08773 2-octaprenyl-3-methyl 65.3 8.1 0.00017 42.8 4.6 35 13-58 5-39 (392)
187 PTZ00075 Adenosylhomocysteinas 65.3 20 0.00044 42.4 7.9 94 676-781 216-317 (476)
188 cd01080 NAD_bind_m-THF_DH_Cycl 64.8 16 0.00035 37.2 6.3 42 230-282 34-76 (168)
189 TIGR01790 carotene-cycl lycope 64.2 8.4 0.00018 42.5 4.4 31 17-58 2-32 (388)
190 PRK10157 putative oxidoreducta 64.2 8.8 0.00019 43.8 4.7 34 14-58 5-38 (428)
191 COG0169 AroE Shikimate 5-dehyd 64.1 9.5 0.00021 42.1 4.8 56 675-740 100-157 (283)
192 PRK07688 thiamine/molybdopteri 64.0 8.5 0.00018 43.2 4.5 40 10-59 20-59 (339)
193 TIGR02032 GG-red-SF geranylger 63.7 9.6 0.00021 39.5 4.5 32 16-58 2-33 (295)
194 PRK15317 alkyl hydroperoxide r 63.7 9.7 0.00021 44.6 5.1 84 655-740 148-242 (517)
195 PF00743 FMO-like: Flavin-bind 63.5 9.3 0.0002 45.4 4.9 45 235-290 178-222 (531)
196 PRK08010 pyridine nucleotide-d 63.4 9.6 0.00021 43.3 4.8 34 13-57 2-35 (441)
197 cd01491 Ube1_repeat1 Ubiquitin 63.2 7.7 0.00017 42.9 3.9 40 10-59 15-54 (286)
198 PRK07878 molybdopterin biosynt 63.2 6.9 0.00015 44.6 3.6 38 236-283 38-75 (392)
199 PRK13940 glutamyl-tRNA reducta 63.2 16 0.00035 42.3 6.6 37 236-282 177-213 (414)
200 cd01483 E1_enzyme_family Super 63.1 12 0.00026 36.0 4.7 34 16-59 1-34 (143)
201 PRK10015 oxidoreductase; Provi 62.7 9.6 0.00021 43.6 4.7 34 14-58 5-38 (429)
202 PRK12769 putative oxidoreducta 62.7 11 0.00025 45.4 5.5 34 13-57 326-359 (654)
203 PRK07411 hypothetical protein; 62.7 7 0.00015 44.6 3.6 38 236-283 34-71 (390)
204 PLN02494 adenosylhomocysteinas 62.6 20 0.00044 42.4 7.3 53 215-282 233-285 (477)
205 PRK15116 sulfur acceptor prote 62.6 10 0.00022 41.6 4.6 41 10-60 26-66 (268)
206 PRK06912 acoL dihydrolipoamide 62.6 9.6 0.00021 43.7 4.7 32 15-57 1-32 (458)
207 TIGR01988 Ubi-OHases Ubiquinon 62.5 9.2 0.0002 41.6 4.3 32 17-59 2-33 (385)
208 PRK08020 ubiF 2-octaprenyl-3-m 62.4 9.6 0.00021 42.1 4.5 35 13-58 4-38 (391)
209 TIGR01035 hemA glutamyl-tRNA r 62.4 15 0.00033 42.2 6.2 95 684-786 158-253 (417)
210 PRK07588 hypothetical protein; 61.9 10 0.00022 42.1 4.6 32 15-57 1-32 (391)
211 PF01262 AlaDh_PNT_C: Alanine 61.4 12 0.00027 37.3 4.7 35 11-56 17-51 (168)
212 cd00650 LDH_MDH_like NAD-depen 61.3 21 0.00046 38.0 6.7 48 441-492 99-148 (263)
213 PF00070 Pyr_redox: Pyridine n 61.3 15 0.00033 31.9 4.7 35 242-287 1-35 (80)
214 PRK12409 D-amino acid dehydrog 61.2 11 0.00024 42.1 4.7 34 16-60 3-36 (410)
215 PRK14194 bifunctional 5,10-met 60.7 17 0.00037 40.6 6.0 73 689-785 141-214 (301)
216 PRK09754 phenylpropionate diox 60.5 12 0.00027 41.9 5.0 36 239-283 2-37 (396)
217 cd01487 E1_ThiF_like E1_ThiF_l 60.4 12 0.00027 37.8 4.6 34 16-59 1-34 (174)
218 PF01210 NAD_Gly3P_dh_N: NAD-d 60.1 13 0.00029 36.7 4.6 32 16-58 1-32 (157)
219 PRK05600 thiamine biosynthesis 60.1 11 0.00023 42.9 4.5 41 9-59 36-76 (370)
220 PRK06185 hypothetical protein; 60.0 11 0.00024 41.8 4.5 35 13-58 5-39 (407)
221 KOG1495|consensus 60.0 10 0.00023 42.1 4.1 38 10-56 16-53 (332)
222 PRK06718 precorrin-2 dehydroge 59.9 14 0.0003 38.5 4.9 80 704-791 7-88 (202)
223 PRK07878 molybdopterin biosynt 59.9 9.3 0.0002 43.6 3.9 40 10-59 38-77 (392)
224 PRK12810 gltD glutamate syntha 59.8 13 0.00028 43.0 5.1 35 13-58 142-176 (471)
225 PRK10262 thioredoxin reductase 59.6 11 0.00024 40.7 4.3 34 239-283 145-178 (321)
226 PRK06153 hypothetical protein; 59.5 7.1 0.00015 45.0 2.9 39 235-283 171-209 (393)
227 PRK08850 2-octaprenyl-6-methox 59.3 12 0.00027 41.7 4.8 34 13-57 3-36 (405)
228 PF00056 Ldh_1_N: lactate/mala 59.2 18 0.0004 35.4 5.4 34 15-57 1-35 (141)
229 PRK07494 2-octaprenyl-6-methox 59.2 15 0.00033 40.5 5.3 37 12-59 5-41 (388)
230 PLN00203 glutamyl-tRNA reducta 59.2 13 0.00029 44.2 5.2 111 664-787 226-343 (519)
231 TIGR01316 gltA glutamate synth 59.1 14 0.0003 42.6 5.2 35 12-57 131-165 (449)
232 PRK00045 hemA glutamyl-tRNA re 59.0 16 0.00035 41.9 5.7 94 686-788 162-257 (423)
233 PRK00676 hemA glutamyl-tRNA re 58.9 20 0.00043 40.7 6.2 38 236-283 170-207 (338)
234 TIGR03140 AhpF alkyl hydropero 58.8 12 0.00025 44.0 4.5 34 12-56 210-243 (515)
235 PRK00676 hemA glutamyl-tRNA re 58.5 10 0.00022 43.0 3.8 69 663-741 136-206 (338)
236 TIGR00936 ahcY adenosylhomocys 58.4 23 0.00051 41.0 6.8 53 215-282 174-226 (406)
237 PLN00093 geranylgeranyl diphos 58.2 13 0.00029 43.1 4.8 38 9-57 32-71 (450)
238 PLN02928 oxidoreductase family 58.0 26 0.00056 39.5 6.9 36 702-740 154-189 (347)
239 TIGR02053 MerA mercuric reduct 58.0 13 0.00028 42.5 4.7 31 16-57 2-32 (463)
240 PRK07411 hypothetical protein; 57.9 10 0.00023 43.2 3.9 40 10-59 34-73 (390)
241 PLN02928 oxidoreductase family 57.9 30 0.00064 39.1 7.4 39 8-57 153-191 (347)
242 PRK08223 hypothetical protein; 57.8 11 0.00023 41.9 3.9 40 10-59 23-62 (287)
243 TIGR03315 Se_ygfK putative sel 57.8 11 0.00025 48.1 4.6 33 14-57 537-569 (1012)
244 PRK08244 hypothetical protein; 57.8 13 0.00027 43.0 4.6 33 14-57 2-34 (493)
245 TIGR01381 E1_like_apg7 E1-like 57.7 7.9 0.00017 47.3 3.0 40 703-744 334-373 (664)
246 PRK07538 hypothetical protein; 57.7 13 0.00028 41.8 4.5 33 15-58 1-33 (413)
247 cd01491 Ube1_repeat1 Ubiquitin 57.7 10 0.00022 42.0 3.6 38 236-283 15-52 (286)
248 PRK06126 hypothetical protein; 57.6 13 0.00029 43.4 4.8 37 11-58 4-40 (545)
249 PRK12771 putative glutamate sy 57.5 13 0.00028 44.0 4.7 34 13-57 136-169 (564)
250 TIGR01984 UbiH 2-polyprenyl-6- 57.5 12 0.00027 40.9 4.3 31 16-57 1-32 (382)
251 PRK06475 salicylate hydroxylas 57.4 12 0.00027 41.7 4.3 32 15-57 3-34 (400)
252 PRK15317 alkyl hydroperoxide r 57.4 13 0.00028 43.6 4.6 35 12-57 209-243 (517)
253 PRK12831 putative oxidoreducta 57.4 13 0.00029 43.1 4.7 34 13-57 139-172 (464)
254 PTZ00188 adrenodoxin reductase 57.1 18 0.0004 43.1 5.8 37 14-60 39-75 (506)
255 PRK06115 dihydrolipoamide dehy 57.0 15 0.00032 42.4 5.0 33 14-57 3-35 (466)
256 PRK08243 4-hydroxybenzoate 3-m 56.9 14 0.0003 41.2 4.6 34 14-58 2-35 (392)
257 PRK12550 shikimate 5-dehydroge 56.8 15 0.00033 40.1 4.8 55 675-740 99-153 (272)
258 PRK12778 putative bifunctional 56.5 17 0.00036 44.8 5.6 35 12-57 429-463 (752)
259 PRK11749 dihydropyrimidine deh 56.5 14 0.0003 42.5 4.6 35 13-58 139-173 (457)
260 PRK07121 hypothetical protein; 56.3 15 0.00033 42.6 4.9 36 13-59 19-54 (492)
261 PLN02568 polyamine oxidase 56.1 16 0.00034 43.6 5.1 41 13-59 4-44 (539)
262 PF03807 F420_oxidored: NADP o 55.9 5.8 0.00013 35.2 1.2 65 709-778 1-66 (96)
263 TIGR01292 TRX_reduct thioredox 55.8 14 0.0003 38.6 4.1 31 242-283 2-32 (300)
264 PRK08132 FAD-dependent oxidore 55.8 14 0.0003 43.4 4.6 35 13-58 22-56 (547)
265 PRK08274 tricarballylate dehyd 55.6 15 0.00033 42.0 4.7 35 13-58 3-37 (466)
266 PLN00203 glutamyl-tRNA reducta 55.6 24 0.00053 42.1 6.5 48 225-282 250-298 (519)
267 TIGR03219 salicylate_mono sali 55.5 15 0.00032 41.3 4.5 32 15-56 1-32 (414)
268 PRK13977 myosin-cross-reactive 55.5 19 0.00041 43.5 5.7 43 10-59 18-60 (576)
269 PF01494 FAD_binding_3: FAD bi 55.4 13 0.00029 39.2 3.9 34 241-285 2-35 (356)
270 TIGR00031 UDP-GALP_mutase UDP- 55.4 16 0.00034 41.8 4.8 32 15-57 2-33 (377)
271 PLN00106 malate dehydrogenase 55.3 50 0.0011 37.1 8.6 156 3-179 8-201 (323)
272 TIGR01470 cysG_Nterm siroheme 55.1 19 0.00041 37.6 5.0 34 12-56 7-40 (205)
273 PRK05249 soluble pyridine nucl 55.1 17 0.00037 41.4 5.0 34 13-57 4-37 (461)
274 cd01484 E1-2_like Ubiquitin ac 55.1 15 0.00032 39.4 4.3 32 242-283 1-32 (234)
275 PRK09897 hypothetical protein; 55.0 16 0.00034 43.7 4.8 39 16-63 3-41 (534)
276 COG0654 UbiH 2-polyprenyl-6-me 55.0 17 0.00037 40.7 4.9 33 14-57 2-34 (387)
277 PRK13940 glutamyl-tRNA reducta 54.9 16 0.00035 42.3 4.8 110 664-787 143-256 (414)
278 PF13454 NAD_binding_9: FAD-NA 54.8 15 0.00032 36.2 3.9 36 18-59 1-36 (156)
279 PLN02676 polyamine oxidase 54.7 16 0.00035 42.7 4.8 36 14-59 26-61 (487)
280 PRK11259 solA N-methyltryptoph 54.5 17 0.00037 39.6 4.8 35 14-59 3-37 (376)
281 COG2072 TrkA Predicted flavopr 54.5 16 0.00035 42.3 4.7 37 12-58 6-42 (443)
282 TIGR02360 pbenz_hydroxyl 4-hyd 54.5 17 0.00037 40.8 4.8 34 14-58 2-35 (390)
283 PRK07190 hypothetical protein; 54.5 16 0.00035 42.7 4.7 35 13-58 4-38 (487)
284 PRK12779 putative bifunctional 54.4 16 0.00035 46.4 5.1 34 13-57 305-338 (944)
285 COG3380 Predicted NAD/FAD-depe 54.3 11 0.00023 42.1 3.1 33 709-743 3-36 (331)
286 PRK07333 2-octaprenyl-6-methox 54.3 15 0.00032 40.6 4.2 34 15-57 2-35 (403)
287 PRK11728 hydroxyglutarate oxid 54.1 17 0.00036 40.7 4.6 33 15-58 3-37 (393)
288 KOG1399|consensus 54.0 11 0.00023 44.3 3.2 29 234-262 180-208 (448)
289 cd01484 E1-2_like Ubiquitin ac 54.0 18 0.00038 38.9 4.6 34 16-59 1-34 (234)
290 PRK07208 hypothetical protein; 53.9 18 0.00039 41.3 5.0 34 13-57 3-36 (479)
291 PRK05976 dihydrolipoamide dehy 53.9 16 0.00035 42.0 4.7 33 14-57 4-36 (472)
292 PRK12409 D-amino acid dehydrog 53.8 16 0.00034 40.8 4.4 33 241-284 2-34 (410)
293 PRK05714 2-octaprenyl-3-methyl 53.7 15 0.00033 40.9 4.3 33 15-58 3-35 (405)
294 PLN02463 lycopene beta cyclase 53.3 19 0.00041 42.0 5.0 37 11-58 25-61 (447)
295 PRK14727 putative mercuric red 53.3 20 0.00043 41.6 5.2 41 3-57 8-48 (479)
296 cd05212 NAD_bind_m-THF_DH_Cycl 53.2 34 0.00074 34.0 6.1 72 688-783 9-81 (140)
297 PRK07818 dihydrolipoamide dehy 53.0 18 0.00039 41.6 4.8 33 14-57 4-36 (466)
298 PTZ00318 NADH dehydrogenase-li 52.7 17 0.00037 41.3 4.5 43 241-283 174-219 (424)
299 PRK12775 putative trifunctiona 52.7 18 0.00039 46.3 5.1 33 14-57 430-462 (1006)
300 cd01486 Apg7 Apg7 is an E1-lik 52.6 17 0.00037 40.8 4.3 32 242-283 1-32 (307)
301 COG3380 Predicted NAD/FAD-depe 52.6 18 0.00039 40.4 4.5 30 16-56 3-32 (331)
302 PRK06617 2-octaprenyl-6-methox 52.5 17 0.00036 40.4 4.3 32 15-57 2-33 (374)
303 KOG0685|consensus 52.4 12 0.00027 44.1 3.4 31 703-735 17-47 (498)
304 PRK12814 putative NADPH-depend 52.3 17 0.00037 44.1 4.6 33 14-57 193-225 (652)
305 PRK11445 putative oxidoreducta 52.2 16 0.00035 40.3 4.1 32 15-58 2-33 (351)
306 PRK00257 erythronate-4-phospha 52.1 29 0.00063 39.9 6.2 48 224-282 100-147 (381)
307 cd01488 Uba3_RUB Ubiquitin act 52.0 20 0.00042 39.9 4.7 34 16-59 1-34 (291)
308 PRK13748 putative mercuric red 52.0 19 0.0004 42.3 4.8 34 13-57 97-130 (561)
309 PF02826 2-Hacid_dh_C: D-isome 51.7 23 0.0005 35.7 4.8 42 231-283 27-68 (178)
310 PF02826 2-Hacid_dh_C: D-isome 51.6 31 0.00066 34.8 5.7 70 5-99 27-96 (178)
311 PRK09853 putative selenate red 51.5 17 0.00036 46.7 4.6 34 13-57 538-571 (1019)
312 cd01075 NAD_bind_Leu_Phe_Val_D 51.4 33 0.00071 35.6 6.0 52 686-740 5-58 (200)
313 KOG2337|consensus 51.3 18 0.0004 43.2 4.5 42 11-62 337-378 (669)
314 PTZ00345 glycerol-3-phosphate 51.2 22 0.00047 40.6 5.0 25 11-35 8-32 (365)
315 PRK06370 mercuric reductase; V 50.9 21 0.00045 41.0 4.9 34 13-57 4-37 (463)
316 PRK08255 salicylyl-CoA 5-hydro 50.9 18 0.00039 44.7 4.7 33 15-58 1-35 (765)
317 PRK06481 fumarate reductase fl 50.9 20 0.00043 42.1 4.7 37 13-60 60-96 (506)
318 PRK12842 putative succinate de 50.6 22 0.00047 42.4 5.1 37 13-60 8-44 (574)
319 TIGR01318 gltD_gamma_fam gluta 50.5 26 0.00055 40.8 5.6 34 13-57 140-173 (467)
320 PRK06834 hypothetical protein; 50.5 21 0.00046 41.7 4.9 34 14-58 3-36 (488)
321 TIGR03143 AhpF_homolog putativ 50.4 18 0.00039 42.9 4.4 32 15-57 5-36 (555)
322 PTZ00367 squalene epoxidase; P 50.3 22 0.00047 42.8 5.1 40 7-57 23-65 (567)
323 PRK09310 aroDE bifunctional 3- 50.1 20 0.00044 42.0 4.7 52 675-737 308-359 (477)
324 PRK09564 coenzyme A disulfide 50.0 21 0.00046 40.4 4.7 37 241-286 1-37 (444)
325 PRK06183 mhpA 3-(3-hydroxyphen 49.9 20 0.00044 42.0 4.6 36 12-58 8-43 (538)
326 PRK02705 murD UDP-N-acetylmura 49.7 21 0.00046 40.8 4.7 32 15-57 1-32 (459)
327 cd01488 Uba3_RUB Ubiquitin act 49.7 19 0.00042 39.9 4.2 32 242-283 1-32 (291)
328 PRK08294 phenol 2-monooxygenas 49.6 18 0.00039 43.8 4.3 36 12-58 30-66 (634)
329 PF13241 NAD_binding_7: Putati 49.6 19 0.00042 33.2 3.6 37 11-58 4-40 (103)
330 PRK06719 precorrin-2 dehydroge 49.5 24 0.00052 35.4 4.5 26 237-262 10-35 (157)
331 PRK15469 ghrA bifunctional gly 49.3 58 0.0013 36.3 7.8 65 9-99 131-195 (312)
332 TIGR01317 GOGAT_sm_gam glutama 49.2 21 0.00045 41.7 4.6 34 14-58 143-176 (485)
333 PRK06467 dihydrolipoamide dehy 49.2 22 0.00048 41.1 4.8 33 14-57 4-36 (471)
334 PF05834 Lycopene_cycl: Lycope 49.1 20 0.00043 40.2 4.3 35 243-286 2-36 (374)
335 TIGR01377 soxA_mon sarcosine o 49.0 23 0.00049 38.8 4.6 34 16-60 2-35 (380)
336 TIGR01813 flavo_cyto_c flavocy 48.8 21 0.00046 40.4 4.5 33 17-60 2-35 (439)
337 PF12831 FAD_oxidored: FAD dep 48.8 22 0.00048 40.7 4.6 33 17-60 2-34 (428)
338 PRK14191 bifunctional 5,10-met 48.6 28 0.00061 38.7 5.2 70 689-782 139-209 (285)
339 PRK05868 hypothetical protein; 48.5 23 0.00049 39.6 4.6 32 16-58 3-34 (372)
340 TIGR01350 lipoamide_DH dihydro 48.5 22 0.00048 40.4 4.6 30 16-56 3-32 (461)
341 PRK11883 protoporphyrinogen ox 48.5 12 0.00026 41.8 2.4 22 241-262 1-22 (451)
342 PRK06153 hypothetical protein; 48.3 16 0.00034 42.3 3.4 41 9-59 171-211 (393)
343 TIGR01789 lycopene_cycl lycope 48.2 26 0.00056 39.5 5.0 41 17-66 2-42 (370)
344 PF03807 F420_oxidored: NADP o 48.2 34 0.00074 30.3 4.8 60 16-92 1-61 (96)
345 PRK12770 putative glutamate sy 48.1 24 0.00051 39.0 4.6 35 13-58 17-51 (352)
346 TIGR00562 proto_IX_ox protopor 47.8 22 0.00048 40.2 4.4 78 635-732 373-450 (462)
347 PRK14179 bifunctional 5,10-met 47.6 33 0.00072 38.1 5.6 74 689-786 140-214 (284)
348 PRK06116 glutathione reductase 47.5 25 0.00054 40.2 4.8 33 14-57 4-36 (450)
349 TIGR02733 desat_CrtD C-3',4' d 47.4 26 0.00057 40.4 5.0 35 14-59 1-35 (492)
350 PLN02576 protoporphyrinogen ox 47.3 25 0.00054 40.4 4.8 34 13-57 11-45 (496)
351 TIGR03169 Nterm_to_SelD pyridi 47.2 13 0.00028 40.8 2.4 35 242-284 1-35 (364)
352 cd05291 HicDH_like L-2-hydroxy 47.1 28 0.00062 38.1 5.0 33 16-57 2-34 (306)
353 PLN02661 Putative thiazole syn 47.1 25 0.00054 40.2 4.7 38 12-59 90-127 (357)
354 TIGR02028 ChlP geranylgeranyl 47.0 22 0.00047 40.3 4.2 31 242-283 2-32 (398)
355 cd01489 Uba2_SUMO Ubiquitin ac 47.0 25 0.00053 39.5 4.5 32 242-283 1-32 (312)
356 PF02737 3HCDH_N: 3-hydroxyacy 46.9 27 0.00059 35.6 4.5 30 242-282 1-30 (180)
357 PF01266 DAO: FAD dependent ox 46.8 26 0.00056 37.0 4.5 33 242-285 1-33 (358)
358 PRK14188 bifunctional 5,10-met 46.7 40 0.00086 37.6 6.0 73 689-785 140-213 (296)
359 TIGR02023 BchP-ChlP geranylger 46.6 22 0.00048 39.6 4.2 31 242-283 2-32 (388)
360 TIGR02734 crtI_fam phytoene de 46.5 22 0.00047 41.1 4.1 32 17-59 1-32 (502)
361 PRK06719 precorrin-2 dehydroge 46.3 34 0.00073 34.4 4.9 35 11-56 10-44 (157)
362 PRK06847 hypothetical protein; 46.3 26 0.00057 38.3 4.6 33 240-283 4-36 (375)
363 PRK06184 hypothetical protein; 46.3 24 0.00053 40.9 4.6 46 706-753 2-48 (502)
364 TIGR00507 aroE shikimate 5-deh 46.0 29 0.00064 37.2 4.8 54 675-739 93-146 (270)
365 PRK04690 murD UDP-N-acetylmura 45.9 27 0.00058 40.6 4.8 35 12-57 6-40 (468)
366 TIGR00518 alaDH alanine dehydr 45.8 37 0.00081 38.5 5.8 68 705-781 165-238 (370)
367 PRK14851 hypothetical protein; 45.7 20 0.00044 44.1 3.9 39 236-284 39-77 (679)
368 PF13450 NAD_binding_8: NAD(P) 45.6 28 0.0006 30.1 3.7 28 245-283 1-28 (68)
369 TIGR01421 gluta_reduc_1 glutat 45.6 27 0.00058 40.3 4.7 32 15-57 3-34 (450)
370 PRK00711 D-amino acid dehydrog 45.6 29 0.00063 38.6 4.9 31 16-57 2-32 (416)
371 COG0665 DadA Glycine/D-amino a 45.6 31 0.00067 37.7 5.0 38 13-61 3-40 (387)
372 PRK13984 putative oxidoreducta 45.6 26 0.00056 41.8 4.7 34 13-57 282-315 (604)
373 PRK07251 pyridine nucleotide-d 45.5 25 0.00054 40.0 4.4 34 240-284 3-36 (438)
374 PF01210 NAD_Gly3P_dh_N: NAD-d 45.5 25 0.00053 34.8 3.8 31 242-283 1-31 (157)
375 PRK01438 murD UDP-N-acetylmura 45.4 34 0.00074 39.5 5.5 39 8-57 10-48 (480)
376 PRK06718 precorrin-2 dehydroge 45.4 34 0.00073 35.7 5.0 35 11-56 7-41 (202)
377 PRK13243 glyoxylate reductase; 45.4 56 0.0012 36.6 7.0 30 702-733 145-174 (333)
378 TIGR01424 gluta_reduc_2 glutat 45.4 27 0.00058 40.0 4.6 32 15-57 3-34 (446)
379 PF00890 FAD_binding_2: FAD bi 45.4 29 0.00063 38.8 4.8 32 17-59 2-33 (417)
380 cd01489 Uba2_SUMO Ubiquitin ac 45.2 27 0.00059 39.1 4.5 34 16-59 1-34 (312)
381 PRK07845 flavoprotein disulfid 45.2 27 0.00059 40.3 4.7 32 16-58 3-34 (466)
382 PRK08163 salicylate hydroxylas 44.9 27 0.00058 38.6 4.4 33 240-283 4-36 (396)
383 TIGR01470 cysG_Nterm siroheme 44.9 30 0.00066 36.1 4.6 35 237-282 6-40 (205)
384 PLN02985 squalene monooxygenas 44.8 32 0.00069 40.7 5.2 35 12-57 41-75 (514)
385 PRK13512 coenzyme A disulfide 44.7 30 0.00064 39.6 4.9 34 241-283 2-35 (438)
386 PRK07803 sdhA succinate dehydr 44.7 30 0.00066 41.9 5.1 35 14-59 8-42 (626)
387 PRK12837 3-ketosteroid-delta-1 44.5 27 0.00058 41.0 4.6 35 13-59 6-40 (513)
388 TIGR02731 phytoene_desat phyto 44.4 26 0.00056 39.8 4.3 32 16-58 1-32 (453)
389 PRK07233 hypothetical protein; 44.4 23 0.00051 39.2 3.9 31 242-283 1-31 (434)
390 cd01490 Ube1_repeat2 Ubiquitin 44.4 28 0.00061 40.8 4.6 39 16-59 1-39 (435)
391 PTZ00318 NADH dehydrogenase-li 44.1 23 0.00049 40.4 3.8 36 237-283 7-42 (424)
392 PRK07574 formate dehydrogenase 44.1 43 0.00093 38.6 6.0 67 9-99 187-253 (385)
393 PRK06567 putative bifunctional 44.0 35 0.00075 44.0 5.6 35 12-57 381-415 (1028)
394 COG1252 Ndh NADH dehydrogenase 43.9 23 0.00049 41.2 3.8 35 14-57 3-37 (405)
395 TIGR03364 HpnW_proposed FAD de 43.9 30 0.00065 37.9 4.6 33 16-59 2-34 (365)
396 cd01337 MDH_glyoxysomal_mitoch 43.9 80 0.0017 35.4 7.9 102 242-463 2-119 (310)
397 PRK15438 erythronate-4-phospha 43.8 47 0.001 38.3 6.2 49 223-282 99-147 (378)
398 cd01493 APPBP1_RUB Ubiquitin a 43.8 22 0.00048 41.4 3.7 40 10-59 16-55 (425)
399 KOG2337|consensus 43.6 15 0.00032 43.9 2.2 37 705-743 338-374 (669)
400 PLN02172 flavin-containing mon 43.5 29 0.00063 40.5 4.6 36 237-283 7-42 (461)
401 cd05290 LDH_3 A subgroup of L- 43.5 32 0.0007 38.2 4.7 32 16-56 1-32 (307)
402 PRK01747 mnmC bifunctional tRN 43.5 31 0.00067 41.7 5.0 35 15-60 261-295 (662)
403 PRK04176 ribulose-1,5-biphosph 43.5 27 0.00059 37.5 4.1 35 239-284 24-58 (257)
404 TIGR01316 gltA glutamate synth 43.4 33 0.00071 39.6 4.9 37 236-283 129-165 (449)
405 PF13454 NAD_binding_9: FAD-NA 43.4 24 0.00051 34.8 3.3 36 244-285 1-36 (156)
406 TIGR03366 HpnZ_proposed putati 43.2 61 0.0013 34.4 6.6 46 226-282 108-153 (280)
407 PRK09126 hypothetical protein; 43.2 28 0.00062 38.4 4.3 33 240-283 3-35 (392)
408 PF13241 NAD_binding_7: Putati 43.1 18 0.00039 33.5 2.3 69 704-785 4-72 (103)
409 PRK08401 L-aspartate oxidase; 43.0 30 0.00066 40.0 4.6 32 15-57 2-33 (466)
410 PRK12810 gltD glutamate syntha 43.0 29 0.00064 40.2 4.5 34 239-283 142-175 (471)
411 COG0562 Glf UDP-galactopyranos 42.9 32 0.00069 39.3 4.5 35 16-61 3-37 (374)
412 PTZ00082 L-lactate dehydrogena 42.9 39 0.00084 37.7 5.3 34 14-57 6-39 (321)
413 PRK12809 putative oxidoreducta 42.8 29 0.00064 42.0 4.6 35 13-58 309-343 (639)
414 COG2081 Predicted flavoprotein 42.7 33 0.00071 39.9 4.7 33 13-56 2-34 (408)
415 COG0476 ThiF Dinucleotide-util 42.6 22 0.00048 37.8 3.2 38 236-283 26-63 (254)
416 PTZ00058 glutathione reductase 42.6 36 0.00078 40.9 5.3 35 12-57 46-80 (561)
417 PRK14175 bifunctional 5,10-met 42.4 53 0.0011 36.6 6.1 49 224-283 142-191 (286)
418 COG0644 FixC Dehydrogenases (f 42.3 29 0.00064 39.1 4.3 37 240-287 3-39 (396)
419 PRK12769 putative oxidoreducta 42.2 30 0.00066 41.9 4.6 35 238-283 325-359 (654)
420 cd05292 LDH_2 A subgroup of L- 42.1 39 0.00084 37.3 5.1 33 15-56 1-33 (308)
421 PRK12835 3-ketosteroid-delta-1 42.0 31 0.00068 41.4 4.7 36 13-59 10-45 (584)
422 PRK14476 nitrogenase molybdenu 41.9 48 0.001 38.8 6.0 76 703-785 307-383 (455)
423 TIGR00292 thiazole biosynthesi 41.9 30 0.00065 37.3 4.1 37 239-286 20-56 (254)
424 TIGR03736 PRTRC_ThiF PRTRC sys 41.9 38 0.00082 36.8 4.8 44 13-59 10-56 (244)
425 PRK06854 adenylylsulfate reduc 41.7 34 0.00073 41.3 4.9 36 13-59 10-47 (608)
426 PRK07573 sdhA succinate dehydr 41.7 34 0.00074 41.6 5.0 37 13-60 34-70 (640)
427 PRK12416 protoporphyrinogen ox 41.4 35 0.00075 39.0 4.7 45 16-65 3-51 (463)
428 cd01079 NAD_bind_m-THF_DH NAD 41.4 55 0.0012 34.8 5.7 129 690-845 36-178 (197)
429 TIGR01989 COQ6 Ubiquinone bios 41.0 30 0.00065 39.5 4.1 35 16-57 2-36 (437)
430 PRK14851 hypothetical protein; 40.8 25 0.00054 43.3 3.7 40 10-59 39-78 (679)
431 PRK06416 dihydrolipoamide dehy 40.7 33 0.00071 39.3 4.4 33 241-284 5-37 (462)
432 TIGR01372 soxA sarcosine oxida 40.7 31 0.00067 44.0 4.6 33 14-57 163-195 (985)
433 COG0111 SerA Phosphoglycerate 40.7 71 0.0015 36.0 6.9 69 7-100 135-203 (324)
434 PRK06753 hypothetical protein; 40.7 32 0.00069 37.7 4.2 29 709-739 2-30 (373)
435 PRK15469 ghrA bifunctional gly 40.5 60 0.0013 36.2 6.3 30 702-733 131-160 (312)
436 PRK07364 2-octaprenyl-6-methox 40.1 28 0.00061 38.7 3.7 33 240-283 18-50 (415)
437 PTZ00052 thioredoxin reductase 40.1 33 0.00072 40.2 4.4 31 15-56 6-36 (499)
438 PRK07843 3-ketosteroid-delta-1 40.1 37 0.0008 40.4 4.8 37 13-60 6-42 (557)
439 PRK12834 putative FAD-binding 40.1 37 0.0008 40.2 4.8 35 13-58 3-37 (549)
440 PRK14106 murD UDP-N-acetylmura 40.1 37 0.00081 38.6 4.7 36 237-283 2-37 (450)
441 COG0111 SerA Phosphoglycerate 40.0 49 0.0011 37.2 5.5 45 688-734 105-167 (324)
442 PRK11259 solA N-methyltryptoph 40.0 33 0.00072 37.5 4.2 35 240-285 3-37 (376)
443 PRK13403 ketol-acid reductoiso 39.9 31 0.00068 39.2 4.0 69 703-782 12-80 (335)
444 PRK06327 dihydrolipoamide dehy 39.6 37 0.00079 39.3 4.6 32 14-56 4-35 (475)
445 PF02737 3HCDH_N: 3-hydroxyacy 39.6 48 0.001 33.8 4.9 31 16-57 1-31 (180)
446 PRK07066 3-hydroxybutyryl-CoA 39.5 17 0.00038 40.7 1.9 30 708-740 8-37 (321)
447 TIGR01377 soxA_mon sarcosine o 39.4 35 0.00075 37.4 4.2 34 242-286 2-35 (380)
448 cd01966 Nitrogenase_NifN_1 Nit 39.4 56 0.0012 37.8 6.0 78 701-785 294-372 (417)
449 PRK12266 glpD glycerol-3-phosp 39.1 40 0.00087 39.6 4.9 35 13-58 5-39 (508)
450 PRK07236 hypothetical protein; 39.1 35 0.00076 37.9 4.2 33 705-739 4-36 (386)
451 PRK11101 glpA sn-glycerol-3-ph 39.0 42 0.0009 39.9 5.0 33 14-57 6-38 (546)
452 PRK13369 glycerol-3-phosphate 39.0 38 0.00082 39.6 4.6 35 13-58 5-39 (502)
453 cd05293 LDH_1 A subgroup of L- 39.0 49 0.0011 36.8 5.3 34 14-56 3-36 (312)
454 TIGR01790 carotene-cycl lycope 38.9 33 0.00073 37.8 4.0 31 243-284 2-32 (388)
455 TIGR01373 soxB sarcosine oxida 38.8 39 0.00084 37.7 4.5 38 239-285 29-66 (407)
456 PF00056 Ldh_1_N: lactate/mala 38.6 49 0.0011 32.5 4.7 34 241-283 1-35 (141)
457 KOG2250|consensus 38.6 48 0.001 39.5 5.2 69 10-91 247-316 (514)
458 COG1486 CelF Alpha-galactosida 38.5 26 0.00057 41.2 3.2 115 706-836 2-138 (442)
459 TIGR01285 nifN nitrogenase mol 38.5 56 0.0012 37.9 5.9 81 696-783 300-383 (432)
460 PRK09260 3-hydroxybutyryl-CoA 38.5 40 0.00086 36.4 4.4 31 241-282 2-32 (288)
461 TIGR00275 flavoprotein, HI0933 38.5 27 0.00059 39.6 3.3 32 18-60 1-32 (400)
462 PRK04965 NADH:flavorubredoxin 38.5 47 0.001 37.0 5.1 35 241-284 3-37 (377)
463 PLN02927 antheraxanthin epoxid 38.5 37 0.00081 41.8 4.6 35 12-57 79-113 (668)
464 cd01486 Apg7 Apg7 is an E1-lik 38.4 28 0.00061 39.1 3.3 34 709-744 1-34 (307)
465 TIGR01373 soxB sarcosine oxida 38.4 45 0.00098 37.2 5.0 37 13-58 29-65 (407)
466 PTZ00082 L-lactate dehydrogena 38.3 42 0.00092 37.4 4.7 33 241-283 7-39 (321)
467 COG3349 Uncharacterized conser 38.2 28 0.0006 41.4 3.3 30 708-740 1-30 (485)
468 PRK11749 dihydropyrimidine deh 38.1 37 0.00081 39.0 4.4 35 238-283 138-172 (457)
469 PLN00093 geranylgeranyl diphos 38.1 39 0.00085 39.3 4.5 32 241-283 40-71 (450)
470 PRK14106 murD UDP-N-acetylmura 38.0 48 0.0011 37.7 5.2 35 12-57 3-37 (450)
471 PRK10262 thioredoxin reductase 37.9 35 0.00076 36.9 3.9 24 239-262 5-28 (321)
472 PRK07574 formate dehydrogenase 37.7 84 0.0018 36.3 7.0 30 702-733 187-216 (385)
473 cd01490 Ube1_repeat2 Ubiquitin 37.6 38 0.00082 39.8 4.3 37 242-283 1-37 (435)
474 PLN02697 lycopene epsilon cycl 37.5 41 0.00088 40.3 4.6 32 15-57 109-140 (529)
475 PRK01438 murD UDP-N-acetylmura 37.5 46 0.001 38.4 5.0 39 234-283 10-48 (480)
476 TIGR00561 pntA NAD(P) transhyd 37.5 54 0.0012 39.3 5.6 98 681-781 133-255 (511)
477 PRK00257 erythronate-4-phospha 37.3 57 0.0012 37.6 5.6 51 687-740 96-146 (381)
478 TIGR01408 Ube1 ubiquitin-activ 37.0 29 0.00063 44.6 3.5 38 10-57 415-457 (1008)
479 PF00670 AdoHcyase_NAD: S-aden 36.9 74 0.0016 32.8 5.8 42 217-262 4-45 (162)
480 COG5322 Predicted dehydrogenas 36.9 47 0.001 37.3 4.6 44 217-261 145-189 (351)
481 PRK06487 glycerate dehydrogena 36.8 99 0.0021 34.4 7.2 39 8-57 142-180 (317)
482 TIGR03736 PRTRC_ThiF PRTRC sys 36.8 45 0.00098 36.2 4.5 44 239-285 10-56 (244)
483 PRK08275 putative oxidoreducta 36.5 47 0.001 39.4 5.0 41 10-59 5-45 (554)
484 COG2072 TrkA Predicted flavopr 36.5 44 0.00096 38.8 4.7 36 239-284 7-42 (443)
485 PRK12770 putative glutamate sy 36.4 51 0.0011 36.4 4.9 35 238-283 16-50 (352)
486 PF00732 GMC_oxred_N: GMC oxid 36.2 29 0.00064 36.8 2.9 32 243-284 3-34 (296)
487 TIGR02732 zeta_caro_desat caro 36.2 40 0.00087 39.3 4.2 32 16-58 1-32 (474)
488 PLN02852 ferredoxin-NADP+ redu 36.1 34 0.00074 40.6 3.7 42 233-283 19-60 (491)
489 PTZ00075 Adenosylhomocysteinas 36.1 76 0.0017 37.8 6.5 46 226-282 240-285 (476)
490 PRK10157 putative oxidoreducta 36.0 38 0.00082 38.8 4.0 32 241-283 6-37 (428)
491 cd05291 HicDH_like L-2-hydroxy 35.9 49 0.0011 36.3 4.6 33 242-283 2-34 (306)
492 COG3349 Uncharacterized conser 35.9 32 0.00069 40.9 3.3 26 15-44 1-26 (485)
493 PRK05976 dihydrolipoamide dehy 35.8 44 0.00095 38.6 4.4 33 240-283 4-36 (472)
494 PRK08293 3-hydroxybutyryl-CoA 35.8 46 0.001 35.9 4.4 31 241-282 4-34 (287)
495 PRK12831 putative oxidoreducta 35.8 45 0.00098 38.8 4.6 35 238-283 138-172 (464)
496 PRK12778 putative bifunctional 35.5 47 0.001 40.9 4.9 36 237-283 428-463 (752)
497 PRK08010 pyridine nucleotide-d 35.4 43 0.00094 38.1 4.3 33 240-283 3-35 (441)
498 PRK06932 glycerate dehydrogena 35.4 1E+02 0.0023 34.2 7.1 38 8-56 141-178 (314)
499 COG1179 Dinucleotide-utilizing 35.4 35 0.00075 37.6 3.3 42 237-288 27-68 (263)
500 PRK06292 dihydrolipoamide dehy 35.4 45 0.00098 38.1 4.4 33 240-283 3-35 (460)
No 1
>KOG1257|consensus
Probab=100.00 E-value=1.8e-106 Score=891.11 Aligned_cols=357 Identities=57% Similarity=0.966 Sum_probs=322.5
Q ss_pred cCCcchhhh-hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccC
Q psy14377 306 HAPVKNLAD-VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDG 384 (848)
Q Consensus 306 ~~~~~~l~~-~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~ 384 (848)
..++..|++ .+|||++||.+|||++++||+|||.|+|+|+|++||+.++++++++++||.||..|+++ |
T Consensus 29 ~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~ky~~L~~L~~r----------N 98 (582)
T KOG1257|consen 29 KRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAKYIYLMDLQDR----------N 98 (582)
T ss_pred cCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHHHHHHHHHHHh----------h
Confidence 357788888 89999999999999999999999999999999999999999999999999999999999 8
Q ss_pred ceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCC
Q psy14377 385 ERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPT 464 (848)
Q Consensus 385 ~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt 464 (848)
++|
T Consensus 99 erL----------------------------------------------------------------------------- 101 (582)
T KOG1257|consen 99 ERL----------------------------------------------------------------------------- 101 (582)
T ss_pred hHH-----------------------------------------------------------------------------
Confidence 877
Q ss_pred CccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcc
Q psy14377 465 SKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKG 544 (848)
Q Consensus 465 ~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g 544 (848)
||+ ....|..+++|++||||||++|+.||.+||+|+|||++++|+|
T Consensus 102 -----------------------------fY~-----~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~G 147 (582)
T KOG1257|consen 102 -----------------------------FYR-----LLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKG 147 (582)
T ss_pred -----------------------------HHH-----HHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccc
Confidence 555 7789999999999999999999999999999999999999999
Q ss_pred cHHHHHhcCCCCCccEEEEecCceeeccCCCCCCCCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccc
Q psy14377 545 HISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGL 624 (848)
Q Consensus 545 ~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~ 624 (848)
||.++|+|||+++|++||||||||||||||||++|||||||||+|||+||||+|++|||||||||||||+||+||+|+|+
T Consensus 148 hi~~~l~nWp~~~V~~IvVTDGerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGL 227 (582)
T KOG1257|consen 148 HIKQVLKNWPERNVKAIVVTDGERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGL 227 (582)
T ss_pred hHHHHHHhCCccceeEEEEeCCCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCc
Q psy14377 625 RQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTR 704 (848)
Q Consensus 625 r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~ 704 (848)
||+|++|++||+|+||||+|+.++|||+++||||||+++|||++|+|||+++|||||||||||+|+|||||+|+|++|++
T Consensus 228 r~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~ 307 (582)
T KOG1257|consen 228 RQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKP 307 (582)
T ss_pred ccccccccHHHHHHHHHHHHHHHHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEecCcchhhHHHHHHHHHHHhcccc----------ccccc-CceecCCCCCCchH-HHhh-hccccchhhcccc
Q psy14377 705 LSDNTILFQGAGEGTASVAVAGLLASLRITK----------TRLSD-NTILFQGAGEGTAS-VAIA-GLLASLRITKTRL 771 (848)
Q Consensus 705 l~d~riv~~GAG~A~~g~giA~ll~~~~~~~----------~~~~d-~g~i~~~r~~~~~~-~~~~-~~~~~~r~~~~~~ 771 (848)
|+|++|||+|||+| |+|||+||+.+|+++ .-+.| +|+|-++|.++-.. ...+ .-..+-+.|+++.
T Consensus 308 lsd~~ilf~GAG~A--~~GIA~l~v~~m~~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V 385 (582)
T KOG1257|consen 308 LSDHVILFLGAGEA--ALGIANLIVMAMVKEGLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAV 385 (582)
T ss_pred cccceEEEecCchH--HhhHHHHHHHHHHHcCCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHH
Confidence 99999999999999 999999999998664 11444 66666666533221 1111 1111222444443
Q ss_pred C--CCceEEeecCCCc
Q psy14377 772 S--DNTILFQGSGEGT 785 (848)
Q Consensus 772 ~--~~~~~~~~s~~~~ 785 (848)
+ .-++++|.|+-|-
T Consensus 386 ~~vKPtvLiG~S~~~g 401 (582)
T KOG1257|consen 386 KEVKPTVLIGASGVGG 401 (582)
T ss_pred HhcCCcEEEecccCCc
Confidence 3 3578888887654
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=5.7e-104 Score=889.75 Aligned_cols=358 Identities=44% Similarity=0.736 Sum_probs=332.8
Q ss_pred CCcchhhh-hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCc
Q psy14377 307 APVKNLAD-VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGE 385 (848)
Q Consensus 307 ~~~~~l~~-~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~ 385 (848)
++...|++ .+|||++||.+||+++|++|||||.|+|+|+|++||+.++++++++++||+||.+|+++ |+
T Consensus 16 ~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~----------Ne 85 (563)
T PRK13529 16 RGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDR----------NE 85 (563)
T ss_pred cchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc----------Cc
Confidence 45666777 78999999999999999999999999999999999999999999999999999999998 77
Q ss_pred eecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCC
Q psy14377 386 RILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTS 465 (848)
Q Consensus 386 ~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~ 465 (848)
+|
T Consensus 86 ~L------------------------------------------------------------------------------ 87 (563)
T PRK13529 86 TL------------------------------------------------------------------------------ 87 (563)
T ss_pred hh------------------------------------------------------------------------------
Confidence 66
Q ss_pred ccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCccc
Q psy14377 466 KAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGH 545 (848)
Q Consensus 466 ~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~ 545 (848)
||+ ..+.|..++||++||||||++|++|+++||+|+|||+|++|+|+
T Consensus 88 ----------------------------fy~-----ll~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~ 134 (563)
T PRK13529 88 ----------------------------FYR-----LLSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDR 134 (563)
T ss_pred ----------------------------hHH-----HHHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHH
Confidence 666 88899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccEEEEecCceeeccCCCCCCCCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCccccccc
Q psy14377 546 ISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLR 625 (848)
Q Consensus 546 i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r 625 (848)
++++|+|||.++|++||||||||||||||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+|+|
T Consensus 135 i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r 214 (563)
T PRK13529 135 IEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWR 214 (563)
T ss_pred HHHHHhcCCcccceEEEEeCCceeeeccccCCCcccccccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCcC
Q psy14377 626 QRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRL 705 (848)
Q Consensus 626 ~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l 705 (848)
|+|++|++|++|+||||++++.+| |+++||||||+++|||++|+|||+++|||||||||||+|+||||+||+|++|++|
T Consensus 215 ~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l 293 (563)
T PRK13529 215 HPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPL 293 (563)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCchHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCCh
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEecCcchhhHHHHHHHHHHHhccc----------cccccc-CceecCCCCCCchH-HHhhhccc----------c
Q psy14377 706 SDNTILFQGAGEGTASVAVAGLLASLRIT----------KTRLSD-NTILFQGAGEGTAS-VAIAGLLA----------S 763 (848)
Q Consensus 706 ~d~riv~~GAG~A~~g~giA~ll~~~~~~----------~~~~~d-~g~i~~~r~~~~~~-~~~~~~~~----------~ 763 (848)
+||||||+|||+| |+|||+||+++|++ +..++| +|+|+++|++ ++. +..++-.+ .
T Consensus 294 ~d~riv~~GAGsA--giGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~ 370 (563)
T PRK13529 294 SDQRIVFLGAGSA--GCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGD 370 (563)
T ss_pred hhcEEEEECCCHH--HHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccC
Confidence 9999999999999 99999999996433 445788 9999999986 543 33333332 2
Q ss_pred chhhccccCCC--ceEEeecC-CCcchhh
Q psy14377 764 LRITKTRLSDN--TILFQGSG-EGTASVA 789 (848)
Q Consensus 764 ~r~~~~~~~~~--~~~~~~s~-~~~~~~~ 789 (848)
..+|+++++.+ |+|+|+|+ .|+-+=.
T Consensus 371 ~~~L~e~v~~~kPtvLIG~S~~~g~Ft~e 399 (563)
T PRK13529 371 VISLLEVVRNVKPTVLIGVSGQPGAFTEE 399 (563)
T ss_pred CCCHHHHHhccCCCEEEEecCCCCCCCHH
Confidence 25899999999 99999998 4554433
No 3
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=7.9e-104 Score=891.02 Aligned_cols=359 Identities=50% Similarity=0.796 Sum_probs=335.8
Q ss_pred CCcchhhh-hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCc
Q psy14377 307 APVKNLAD-VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGE 385 (848)
Q Consensus 307 ~~~~~l~~-~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~ 385 (848)
+++..|++ .+|||++||.+||+++|++|+||+.|+|+|+|++||+.++++++++++||+||.+|+++ |+
T Consensus 41 ~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~----------Ne 110 (581)
T PLN03129 41 SGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQER----------NE 110 (581)
T ss_pred cchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhh----------Cc
Confidence 46677777 89999999999999999999999999999999999999999999999999999999998 77
Q ss_pred eecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCC
Q psy14377 386 RILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTS 465 (848)
Q Consensus 386 ~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~ 465 (848)
+|
T Consensus 111 ~L------------------------------------------------------------------------------ 112 (581)
T PLN03129 111 RL------------------------------------------------------------------------------ 112 (581)
T ss_pred cc------------------------------------------------------------------------------
Confidence 66
Q ss_pred ccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCccc
Q psy14377 466 KAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGH 545 (848)
Q Consensus 466 ~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~ 545 (848)
||+ ..+.|..++||++||||||++|++++++||+|+|||+|++|+|+
T Consensus 113 ----------------------------fy~-----ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~ 159 (581)
T PLN03129 113 ----------------------------FYR-----VLIDNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGR 159 (581)
T ss_pred ----------------------------chh-----hhhcCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHH
Confidence 666 88899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccEEEEecCceeeccCCCCCCCCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCccccccc
Q psy14377 546 ISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLR 625 (848)
Q Consensus 546 i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r 625 (848)
++++|+|||.+++++||||||+|||||||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+|+|
T Consensus 160 i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r 239 (581)
T PLN03129 160 VLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLR 239 (581)
T ss_pred HHHHHhcCCCcCceEEEEecCcceeeccccCCCccccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCcC
Q psy14377 626 QRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRL 705 (848)
Q Consensus 626 ~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l 705 (848)
|+|++|++|++|+||||++++.+|||+++||||||+++|||++|+|||+++|||||||||||+|+||||+||+|++|++|
T Consensus 240 ~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l 319 (581)
T PLN03129 240 QPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDL 319 (581)
T ss_pred CCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCccHHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEecCcchhhHHHHHHHHHHHhccc-----------cccccc-CceecCCCCCCchH-HHhhhcc-ccchhhcccc
Q psy14377 706 SDNTILFQGAGEGTASVAVAGLLASLRIT-----------KTRLSD-NTILFQGAGEGTAS-VAIAGLL-ASLRITKTRL 771 (848)
Q Consensus 706 ~d~riv~~GAG~A~~g~giA~ll~~~~~~-----------~~~~~d-~g~i~~~r~~~~~~-~~~~~~~-~~~r~~~~~~ 771 (848)
+||||||+|||+| |+|||+||+.+|++ +..++| +|+|+++|+.+++. +..+.-. .+..+|++++
T Consensus 320 ~d~riv~~GAGsA--gigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v 397 (581)
T PLN03129 320 ADQRILFAGAGEA--GTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAV 397 (581)
T ss_pred hhceEEEECCCHH--HHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHH
Confidence 9999999999999 99999999997663 445778 99999999876664 2222222 2457899999
Q ss_pred CC--CceEEeecCC-Ccchh
Q psy14377 772 SD--NTILFQGSGE-GTASV 788 (848)
Q Consensus 772 ~~--~~~~~~~s~~-~~~~~ 788 (848)
+. +|+|+|+|+. |+-+=
T Consensus 398 ~~vkptvLIG~S~~~g~Ft~ 417 (581)
T PLN03129 398 KAIKPTVLIGLSGVGGTFTK 417 (581)
T ss_pred hccCCCEEEEecCCCCCCCH
Confidence 99 9999999974 55443
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=3.5e-103 Score=882.80 Aligned_cols=357 Identities=43% Similarity=0.753 Sum_probs=332.3
Q ss_pred CCcchhhh-hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCc
Q psy14377 307 APVKNLAD-VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGE 385 (848)
Q Consensus 307 ~~~~~l~~-~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~ 385 (848)
++...|++ .+|||++||.+||+++|++|+||+.|+|+|+|++||+.++++++++++||+||.+|+++ |+
T Consensus 18 ~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~----------Ne 87 (559)
T PTZ00317 18 RGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDT----------NE 87 (559)
T ss_pred cchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhc----------Cc
Confidence 45666777 88999999999999999999999999999999999999999999999999999999998 77
Q ss_pred eecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCC
Q psy14377 386 RILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTS 465 (848)
Q Consensus 386 ~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~ 465 (848)
+|
T Consensus 88 ~L------------------------------------------------------------------------------ 89 (559)
T PTZ00317 88 TL------------------------------------------------------------------------------ 89 (559)
T ss_pred hH------------------------------------------------------------------------------
Confidence 66
Q ss_pred ccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCccc
Q psy14377 466 KAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGH 545 (848)
Q Consensus 466 ~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~ 545 (848)
||+ ..+.|..++||++||||||++|++++.+|+.|+|||++++|+|+
T Consensus 90 ----------------------------fy~-----ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~ 136 (559)
T PTZ00317 90 ----------------------------FYA-----LLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGK 136 (559)
T ss_pred ----------------------------HHH-----HHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcch
Confidence 666 88899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccEEEEecCceeeccCCCCCCCCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCccccccc
Q psy14377 546 ISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLR 625 (848)
Q Consensus 546 i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r 625 (848)
++++|+|||.++|++||||||||||||||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+|+|
T Consensus 137 i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r 216 (559)
T PTZ00317 137 IREILKNWPYDNVDVIVITDGSRILGLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLR 216 (559)
T ss_pred HHHHHhcCCccCceEEEEeccccccccCCcccccccccccHHHHHHhhcCCChhhccceEEecCCChhhhccCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCcC
Q psy14377 626 QRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRL 705 (848)
Q Consensus 626 ~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l 705 (848)
|+|++|++|++|+||||++++.+| |+++||||||+++|||++|+|||+++|||||||||||+|+|||||||+|++|++|
T Consensus 217 ~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l 295 (559)
T PTZ00317 217 EKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPP 295 (559)
T ss_pred CCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCCh
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEecCcchhhHHHHHHHHHHHhc----c------ccccccc-CceecCCCCCCchH-HHhhhccc------cchhh
Q psy14377 706 SDNTILFQGAGEGTASVAVAGLLASLR----I------TKTRLSD-NTILFQGAGEGTAS-VAIAGLLA------SLRIT 767 (848)
Q Consensus 706 ~d~riv~~GAG~A~~g~giA~ll~~~~----~------~~~~~~d-~g~i~~~r~~~~~~-~~~~~~~~------~~r~~ 767 (848)
+||||||+|||+| |+|||+||+++| + ++..++| +|+|+++|+..++. +..++-.+ ...+|
T Consensus 296 ~d~riv~~GAGsA--giGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L 373 (559)
T PTZ00317 296 EEQRIVFFGAGSA--AIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTL 373 (559)
T ss_pred hhcEEEEECCCHH--HHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCH
Confidence 9999999999999 999999999754 4 3445778 99999999876654 33233321 14689
Q ss_pred ccccCCC--ceEEeecC-CCcch
Q psy14377 768 KTRLSDN--TILFQGSG-EGTAS 787 (848)
Q Consensus 768 ~~~~~~~--~~~~~~s~-~~~~~ 787 (848)
+++++.+ |+++|+|+ .|+-+
T Consensus 374 ~e~v~~~KPtvLIG~S~~~g~Ft 396 (559)
T PTZ00317 374 EDVVRFVKPTALLGLSGVGGVFT 396 (559)
T ss_pred HHHHhccCCCEEEEecCCCCCCC
Confidence 9999999 99999997 45544
No 5
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=5.2e-66 Score=582.04 Aligned_cols=260 Identities=32% Similarity=0.486 Sum_probs=233.4
Q ss_pred cccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhCCcCCCceEEEecc
Q psy14377 172 DSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITKTRLSDNTILFQGA 248 (848)
Q Consensus 172 ~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GA 248 (848)
+..-..||+ ..|++||+..+.||.+.+ +|+..+|+| ||||++|+ ||||+||+|++|++|+||||||+||
T Consensus 234 ~av~~~~P~---~~Iq~EDf~~~naf~iL~----kyr~~i~~FnDDiQGTaaV~-lAgll~Alr~~g~~l~d~riv~~GA 305 (559)
T PTZ00317 234 EAVSSRWPN---AVVQFEDFSNNHCFDLLE----RYQNKYRCFNDDIQGTGAVI-AAGFLNALKLSGVPPEEQRIVFFGA 305 (559)
T ss_pred HHHHHhCCC---eEEehhhcCCccHHHHHH----HhccCCCEecccchhHHHHH-HHHHHHHHHHhCCChhhcEEEEECC
Confidence 335555662 469999999999988777 677789999 99999999 9999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhhhhccccccHHHHh
Q psy14377 249 GEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQ 328 (848)
Q Consensus 249 GaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~ 328 (848)
|+||+|||+||+++|+++|+|+|||+++|||+|++|||+++|.+ +++++|.+||+......
T Consensus 306 GsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~-~l~~~k~~fa~~~~~~~------------------ 366 (559)
T PTZ00317 306 GSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGD-KLAKHKVPFARTDISAE------------------ 366 (559)
T ss_pred CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCc-cccHHHHHHhccccccc------------------
Confidence 99999999999999999999999999999999999999999975 48999999998632100
Q ss_pred hhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCCCCCCcccccccHH
Q psy14377 329 ALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLY 408 (848)
Q Consensus 329 ~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~ 408 (848)
+ + ...+|.
T Consensus 367 -----~-------------------------------------------------~------------------~~~~L~ 374 (559)
T PTZ00317 367 -----D-------------------------------------------------S------------------SLKTLE 374 (559)
T ss_pred -----c-------------------------------------------------c------------------cCCCHH
Confidence 0 0 012688
Q ss_pred HHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHhccCCCcEEEEeCC
Q psy14377 409 TALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGS 488 (848)
Q Consensus 409 ~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGs 488 (848)
++++++|| ||+||+ |++||+|||||||+|+++|+|||||||||||++|||||||||+||+|||||||||
T Consensus 375 e~v~~~KP------tvLIG~-----S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGs 443 (559)
T PTZ00317 375 DVVRFVKP------TALLGL-----SGVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGS 443 (559)
T ss_pred HHHhccCC------CEEEEe-----cCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECC
Confidence 99999999 678997 8999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377 489 PFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW 553 (848)
Q Consensus 489 Pf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw 553 (848)
||+||+|+||+++|+|+||+ +.|||+|+|++.+++. ++|++||++ .++.|++.
T Consensus 444 pf~pv~~~G~~~~p~Q~NN~-----~iFPGiglG~l~~~a~-~Itd~m~~a------AA~aLA~~ 496 (559)
T PTZ00317 444 PFPPVTLNGKTIQPSQGNNL-----YVFPGVGLGCAIAQPS-YIPDEMLIA------AAASLATL 496 (559)
T ss_pred CCCCcccCCeeeccCcCcce-----eeccchhhhhHhhccc-CCCHHHHHH------HHHHHHhh
Confidence 99999999999999999999 5689999999999985 799999997 67788875
No 6
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=9.7e-66 Score=580.18 Aligned_cols=265 Identities=36% Similarity=0.561 Sum_probs=237.4
Q ss_pred cccccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhCCcCCCceEEEe
Q psy14377 170 MVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITKTRLSDNTILFQ 246 (848)
Q Consensus 170 ~~~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~ 246 (848)
+|+..-..||+ . .|++||+..++||.+++ +|++.+|+| ||||++|+ ||||+||+|++|++|+||||||+
T Consensus 230 fv~av~~~~P~--~-~I~~EDf~~~~af~iL~----ryr~~i~~FnDDiQGTaaV~-LAgll~A~r~~g~~l~d~riv~~ 301 (563)
T PRK13529 230 FVQAVKRRFPN--A-LLQFEDFAQKNARRILE----RYRDEICTFNDDIQGTGAVT-LAGLLAALKITGEPLSDQRIVFL 301 (563)
T ss_pred HHHHHHHhCCC--e-EEehhhcCCchHHHHHH----HhccCCCeeccccchHHHHH-HHHHHHHHHHhCCChhhcEEEEE
Confidence 44456666773 2 79999999999998877 577789999 99999999 99999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhhhhccccccHHH
Q psy14377 247 GAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEE 326 (848)
Q Consensus 247 GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~e 326 (848)
|||+||+|||+||+++|+++|+|+|||+++|||||++|||+++|++ ++++|.+|+++.++...+
T Consensus 302 GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~--l~~~k~~fa~~~~~~~~~-------------- 365 (563)
T PRK13529 302 GAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPD--LLDFQKPYARKREELADW-------------- 365 (563)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCc--chHHHHHHhhhccccccc--------------
Confidence 9999999999999999999999999999999999999999999975 999999999875331110
Q ss_pred HhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCCCCCCccccccc
Q psy14377 327 RQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLS 406 (848)
Q Consensus 327 r~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~ 406 (848)
+. .-++.+
T Consensus 366 -------------------------------~~-----------------------------------------~~~~~~ 373 (563)
T PRK13529 366 -------------------------------DT-----------------------------------------EGDVIS 373 (563)
T ss_pred -------------------------------cc-----------------------------------------ccCCCC
Confidence 00 001237
Q ss_pred HHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHhccCCCcEEEEe
Q psy14377 407 LYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFAS 486 (848)
Q Consensus 407 L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~~~T~G~ai~At 486 (848)
|.++++++|| |++||+ |++||+|||||||+|+++|+|||||||||||+++||||||||+||+|||||||
T Consensus 374 L~e~v~~~kP------tvLIG~-----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~At 442 (563)
T PRK13529 374 LLEVVRNVKP------TVLIGV-----SGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVAT 442 (563)
T ss_pred HHHHHhccCC------CEEEEe-----cCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEE
Confidence 8999999999 678997 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377 487 GSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW 553 (848)
Q Consensus 487 GsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw 553 (848)
||||+||+|+||+++|+|+||+ +.|||+|+|++.+++. ++|++||++ .++.|++.
T Consensus 443 Gspf~pv~~~G~~~~p~Q~NN~-----~iFPGiglGa~~~~a~-~Itd~m~~a------AA~alA~~ 497 (563)
T PRK13529 443 GSPFAPVEYNGKTYPIGQCNNA-----YIFPGLGLGVIASGAR-RVTDGMLMA------AAHALADC 497 (563)
T ss_pred CCCCCCeeeCCeEeccCcCcce-----eecccchhhhhhcCCc-CCCHHHHHH------HHHHHHhh
Confidence 9999999999999999999999 5689999999999985 799999997 77888875
No 7
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.9e-65 Score=579.39 Aligned_cols=245 Identities=45% Similarity=0.715 Sum_probs=226.4
Q ss_pred CCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHH
Q psy14377 185 GVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVM 261 (848)
Q Consensus 185 gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~ 261 (848)
.|++||++.++||.+++ +|+..+|+| ||||++|+ ||||+||+|++|++|+||||||+|||+||+|||+||+.
T Consensus 268 ~I~~EDf~~~~af~iL~----ryr~~i~~FnDDiQGTaaV~-lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~ 342 (581)
T PLN03129 268 LVQFEDFANKNAFRLLQ----RYRTTHLCFNDDIQGTAAVA-LAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIAL 342 (581)
T ss_pred EEehhhcCCccHHHHHH----HhccCCCEeccccchHHHHH-HHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHH
Confidence 59999999999998887 566789999 99999999 99999999999999999999999999999999999999
Q ss_pred HHHh-cCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccc
Q psy14377 262 AMQK-EGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAV 340 (848)
Q Consensus 262 ~m~~-~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v 340 (848)
+|++ +|+|++||+++||++|++|||+++|.+ +++++|++|++..++
T Consensus 343 ~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~-~l~~~k~~fa~~~~~-------------------------------- 389 (581)
T PLN03129 343 AMSRQTGISEEEARKRIWLVDSKGLVTKSRKD-SLQPFKKPFAHDHEP-------------------------------- 389 (581)
T ss_pred HHHhhcCCChhhhcCcEEEEcCCCeEeCCCCc-cChHHHHHHHhhccc--------------------------------
Confidence 9998 499999999999999999999999975 388888888875211
Q ss_pred cchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccC
Q psy14377 341 KSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCL 420 (848)
Q Consensus 341 ~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~ 420 (848)
..+|.++++++||
T Consensus 390 ---------------------------------------------------------------~~~L~e~v~~vkp---- 402 (581)
T PLN03129 390 ---------------------------------------------------------------GASLLEAVKAIKP---- 402 (581)
T ss_pred ---------------------------------------------------------------CCCHHHHHhccCC----
Confidence 0157889999999
Q ss_pred ceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEE
Q psy14377 421 PITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTF 500 (848)
Q Consensus 421 ~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~ 500 (848)
||+||+ |++||+|||||||+|+++|+|||||||||||++|||+|||||+||+|+|||||||||+||+|+||++
T Consensus 403 --tvLIG~-----S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~ 475 (581)
T PLN03129 403 --TVLIGL-----SGVGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTF 475 (581)
T ss_pred --CEEEEe-----cCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeee
Confidence 678997 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377 501 TPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW 553 (848)
Q Consensus 501 ~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw 553 (848)
+|+|+||+ +.|||+|++++.+++. ++|++||++ ..+.|++.
T Consensus 476 ~p~Q~NN~-----~iFPGiglGal~~~a~-~Itd~m~~a------AA~aLA~~ 516 (581)
T PLN03129 476 HPGQANNA-----YIFPGIGLGALLSGAI-RVTDDMLLA------AAEALAAQ 516 (581)
T ss_pred cCccccce-----eeccchhhHHHhcCCc-CCCHHHHHH------HHHHHHHh
Confidence 99999999 5689999999999985 799999997 77888875
No 8
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=1.4e-65 Score=535.45 Aligned_cols=221 Identities=46% Similarity=0.738 Sum_probs=189.8
Q ss_pred EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCC
Q psy14377 215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGG 294 (848)
Q Consensus 215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~ 294 (848)
||||++|+ ||||+||+|++|++|+||||||+|||+||+|||+||+++|+++|+|++||++||||+|++|||+++|++
T Consensus 1 iqGTaaV~-lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~-- 77 (255)
T PF03949_consen 1 IQGTAAVV-LAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDRED-- 77 (255)
T ss_dssp CHHHHHHH-HHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSS--
T ss_pred CchhHHHH-HHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCcc--
Confidence 79999999 999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhccc
Q psy14377 295 VTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKT 374 (848)
Q Consensus 295 l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~ 374 (848)
++++|++|+++.++...
T Consensus 78 l~~~~~~~a~~~~~~~~--------------------------------------------------------------- 94 (255)
T PF03949_consen 78 LNPHKKPFARKTNPEKD--------------------------------------------------------------- 94 (255)
T ss_dssp HSHHHHHHHBSSSTTT----------------------------------------------------------------
T ss_pred CChhhhhhhccCccccc---------------------------------------------------------------
Confidence 89999999997643110
Q ss_pred ceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCC
Q psy14377 375 DIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKR 454 (848)
Q Consensus 375 ~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~r 454 (848)
..+|.++++++|| |++||+ |++||+||||+||+|+++|+|
T Consensus 95 -----------------------------~~~L~eav~~~kP------tvLIG~-----S~~~g~ft~evv~~Ma~~~er 134 (255)
T PF03949_consen 95 -----------------------------WGSLLEAVKGAKP------TVLIGL-----SGQGGAFTEEVVRAMAKHNER 134 (255)
T ss_dssp ------------------------------SSHHHHHHCH--------SEEEEC-----SSSTTSS-HHHHHHCHHHSSS
T ss_pred -----------------------------ccCHHHHHHhcCC------CEEEEe-----cCCCCcCCHHHHHHHhccCCC
Confidence 1268899999999 678997 889999999999999999999
Q ss_pred ceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCc
Q psy14377 455 PIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPR 534 (848)
Q Consensus 455 PIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~ 534 (848)
||||||||||+++||||||||+||+|++||||||||+||+|+||+++|+|+||+|. |||+|++++.+++. ++++
T Consensus 135 PIIF~LSNPt~~aE~~peda~~~t~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~i-----FPGiglG~l~~~a~-~Itd 208 (255)
T PF03949_consen 135 PIIFPLSNPTPKAECTPEDAYEWTDGRAIFATGSPFPPVEYNGRSDYPNQCNNSYI-----FPGIGLGALDSRAR-RITD 208 (255)
T ss_dssp EEEEE-SSSCGGSSS-HHHHHHTTTSEEEEEESS----EEETSCEESSCE-SGGGT-----HHHHHHHHHHCTBS-S--H
T ss_pred CEEEECCCCCCcccCCHHHHHhhCCceEEEecCCccCCeeeCCeEEecCCCCeeEe-----eccceeeeeecCCe-ecCH
Confidence 99999999999999999999999999999999999999999999999999999954 79999999999985 7999
Q ss_pred cceeeccCcccHHHHHhcC
Q psy14377 535 GLFISIHDKGHISEVLRNW 553 (848)
Q Consensus 535 gm~L~~~d~g~i~eiL~Nw 553 (848)
+||++ ..+.|++.
T Consensus 209 ~M~~a------AA~aLA~~ 221 (255)
T PF03949_consen 209 EMFLA------AAEALADL 221 (255)
T ss_dssp HHHHH------HHHHHHHT
T ss_pred HHHHH------HHHHHHHh
Confidence 99997 67788776
No 9
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=3.8e-67 Score=522.89 Aligned_cols=172 Identities=65% Similarity=1.192 Sum_probs=153.7
Q ss_pred cccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCCCCCCC
Q psy14377 502 PGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMG 581 (848)
Q Consensus 502 ~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmg 581 (848)
+.+.|..++||++||||||++|+.++.+|+.|+|||++++|+|+++++|+|||.++|+++|||||||||||||+|++||+
T Consensus 11 ~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILGlGD~G~~Gm~ 90 (182)
T PF00390_consen 11 LLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILGLGDLGVNGMG 90 (182)
T ss_dssp HHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTTTBS-GGGGHH
T ss_pred ehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhccccCcCcceEE
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCC
Q psy14377 582 IPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFA 661 (848)
Q Consensus 582 IpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~ 661 (848)
||+||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++|++|+||||+|++.+|||+++||||||+
T Consensus 91 I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp~~~IqfEDf~ 170 (182)
T PF00390_consen 91 IPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGPNALIQFEDFS 170 (182)
T ss_dssp HHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGCTSEEEE-S--
T ss_pred eeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHc
Q psy14377 662 NHSAFRFLDTYR 673 (848)
Q Consensus 662 ~~naf~lL~ryr 673 (848)
++|||++|+|||
T Consensus 171 ~~nAf~iL~kYr 182 (182)
T PF00390_consen 171 NPNAFRILDKYR 182 (182)
T ss_dssp CCHHHHHHHHHT
T ss_pred ChhHHHHHHhcC
Confidence 999999999997
No 10
>KOG1257|consensus
Probab=100.00 E-value=1.2e-64 Score=559.82 Aligned_cols=235 Identities=50% Similarity=0.756 Sum_probs=218.8
Q ss_pred hhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcC
Q psy14377 199 PVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARD 275 (848)
Q Consensus 199 ~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~ 275 (848)
-..+|+++||..+++| +||||.|+ ||||++|+|+||++|+|++|||+|||+||+|||+||+++|+++|+|++||++
T Consensus 267 nAfrlL~kYr~~~c~FNDDIQGTaaVa-lAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~k 345 (582)
T KOG1257|consen 267 NAFRLLEKYRNKYCMFNDDIQGTAAVA-LAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEARK 345 (582)
T ss_pred hHHHHHHHhccccceecccccchhHHH-HHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHHHhc
Confidence 4567899999999999 99999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhcccc
Q psy14377 276 KIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVD 355 (848)
Q Consensus 276 ~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~ 355 (848)
||||+|++|||+++|+. ++++++.+||+++++++
T Consensus 346 kIwlvD~~GLi~~~r~~-~l~~~~~~fAk~~~~~~--------------------------------------------- 379 (582)
T KOG1257|consen 346 KIWLVDSKGLITKGRKA-SLTEEKKPFAKDHEEIK--------------------------------------------- 379 (582)
T ss_pred cEEEEecCceeeccccC-CCChhhccccccChHHH---------------------------------------------
Confidence 99999999999999984 59999999999875433
Q ss_pred ccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccC
Q psy14377 356 RYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAA 435 (848)
Q Consensus 356 ~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~ 435 (848)
+|.+|++.+|| +++||+ |+
T Consensus 380 --------------------------------------------------~L~e~V~~vKP------tvLiG~-----S~ 398 (582)
T KOG1257|consen 380 --------------------------------------------------DLEEAVKEVKP------TVLIGA-----SG 398 (582)
T ss_pred --------------------------------------------------HHHHHHHhcCC------cEEEec-----cc
Confidence 35567778899 466996 89
Q ss_pred CCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEe
Q psy14377 436 IPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVY 515 (848)
Q Consensus 436 ~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvY 515 (848)
+||+|||||+|+|+++|||||||||||||+++||||||||+||+||||||||||||||.|+||+|+|+|+||+| .
T Consensus 399 ~~g~Fteevl~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~y-----i 473 (582)
T KOG1257|consen 399 VGGAFTEEVLRAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAY-----I 473 (582)
T ss_pred CCccCCHHHHHHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeE-----e
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995 5
Q ss_pred cchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377 516 TPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW 553 (848)
Q Consensus 516 TPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw 553 (848)
|||+|+++..++++ ++|++||+. ..+.|+..
T Consensus 474 FPGi~Lg~vlsg~~-~i~D~mfl~------Aae~LA~~ 504 (582)
T KOG1257|consen 474 FPGIGLGVVLSGAR-RIPDEMFLA------AAEALAEQ 504 (582)
T ss_pred cchHHHHHHHcCCc-cCCHHHHHH------HHHHHHhh
Confidence 79999999999985 799999997 67788775
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=2.6e-63 Score=518.01 Aligned_cols=221 Identities=44% Similarity=0.711 Sum_probs=200.0
Q ss_pred EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCC
Q psy14377 215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGG 294 (848)
Q Consensus 215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~ 294 (848)
||||++|+ ||||+||+|++|++|+||||||+|||+||+|||+||+.+|+++|+|+|||+++||++|++|||+++|++
T Consensus 1 iqGTaaV~-lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~-- 77 (254)
T cd00762 1 IQGTASVA-VAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKE-- 77 (254)
T ss_pred CchhHHHH-HHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCc--
Confidence 79999999 999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhccc
Q psy14377 295 VTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKT 374 (848)
Q Consensus 295 l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~ 374 (848)
++++|.++++..++ +
T Consensus 78 l~~~~~~~~~~~~~-----------------~------------------------------------------------ 92 (254)
T cd00762 78 TCPNEYHLARFANP-----------------E------------------------------------------------ 92 (254)
T ss_pred cCHHHHHHHHHcCc-----------------c------------------------------------------------
Confidence 67666663321100 0
Q ss_pred ceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCC
Q psy14377 375 DIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKR 454 (848)
Q Consensus 375 ~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~r 454 (848)
+. ..+|.++++.+|| |++||+ |++||+||||+||+|+++|+|
T Consensus 93 ---------~~------------------~~~L~eav~~~kp------tvlIG~-----S~~~g~ft~evv~~Ma~~~~~ 134 (254)
T cd00762 93 ---------RE------------------SGDLEDAVEAAKP------DFLIGV-----SRVGGAFTPEVIRAXAEINER 134 (254)
T ss_pred ---------cc------------------cCCHHHHHHhhCC------CEEEEe-----CCCCCCCCHHHHHHHhhcCCC
Confidence 00 0268889999999 788997 899999999999999999999
Q ss_pred ceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCc
Q psy14377 455 PIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPR 534 (848)
Q Consensus 455 PIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~ 534 (848)
||||||||||+++||||||||+||+||+||||||||+||+|+||+++|+|+||+ +.|||+|++++.+++. ++|+
T Consensus 135 PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~-----~iFPGiglGal~~~a~-~itd 208 (254)
T cd00762 135 PVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNL-----YIFPGVALGVILCRIR-HITD 208 (254)
T ss_pred CEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccce-----eeccchhhhhHhhcCe-ECCH
Confidence 999999999999999999999999999999999999999999999999999999 5689999999999985 7999
Q ss_pred cceeeccCcccHHHHHhcC
Q psy14377 535 GLFISIHDKGHISEVLRNW 553 (848)
Q Consensus 535 gm~L~~~d~g~i~eiL~Nw 553 (848)
+||++ ..+.|++.
T Consensus 209 ~m~~a------AA~aLA~~ 221 (254)
T cd00762 209 DVFLS------AAEAIASS 221 (254)
T ss_pred HHHHH------HHHHHHhh
Confidence 99997 77888876
No 12
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=2.4e-63 Score=524.41 Aligned_cols=220 Identities=50% Similarity=0.778 Sum_probs=204.0
Q ss_pred EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCC
Q psy14377 215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGG 294 (848)
Q Consensus 215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~ 294 (848)
||||++|+ ||||+||+|++|++|+||||||+|||+||+|||+||+.+|+++|+|+|||+++|||+|++|||+++|.+
T Consensus 1 IqGTa~V~-lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~-- 77 (279)
T cd05312 1 IQGTAAVA-LAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKD-- 77 (279)
T ss_pred CchHHHHH-HHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCc--
Confidence 69999999 999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhccc
Q psy14377 295 VTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKT 374 (848)
Q Consensus 295 l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~ 374 (848)
++++|.+|+++.++ +
T Consensus 78 l~~~~~~~a~~~~~-------------------------~---------------------------------------- 92 (279)
T cd05312 78 LTPFKKPFARKDEE-------------------------K---------------------------------------- 92 (279)
T ss_pred chHHHHHHHhhcCc-------------------------c----------------------------------------
Confidence 88888888875321 0
Q ss_pred ceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCC
Q psy14377 375 DIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKR 454 (848)
Q Consensus 375 ~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~r 454 (848)
...+|.++++.+|| |+|||+ |++||+||+|+||+|+++|+|
T Consensus 93 ----------------------------~~~~L~e~i~~v~p------tvlIG~-----S~~~g~ft~evv~~Ma~~~~~ 133 (279)
T cd05312 93 ----------------------------EGKSLLEVVKAVKP------TVLIGL-----SGVGGAFTEEVVRAMAKSNER 133 (279)
T ss_pred ----------------------------cCCCHHHHHHhcCC------CEEEEe-----CCCCCCCCHHHHHHHHhcCCC
Confidence 01268889999999 788997 889999999999999999999
Q ss_pred ceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCc
Q psy14377 455 PIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPR 534 (848)
Q Consensus 455 PIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~ 534 (848)
||||||||||+++||+|||||+||+|++||||||||+||+|+||+++|+|+||+ +.|||+|++++.+++. ++++
T Consensus 134 PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~-----~iFPGiglGal~~~a~-~itd 207 (279)
T cd05312 134 PIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNA-----YIFPGIGLGAILSGAR-HITD 207 (279)
T ss_pred CEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCccee-----eeccchhhHHHHcCCe-eCCH
Confidence 999999999999999999999999999999999999999999999999999999 6689999999999985 7999
Q ss_pred cceeeccCcccHHHHHhcC
Q psy14377 535 GLFISIHDKGHISEVLRNW 553 (848)
Q Consensus 535 gm~L~~~d~g~i~eiL~Nw 553 (848)
+|+++ ..+.|++.
T Consensus 208 ~m~~a------AA~aLA~~ 220 (279)
T cd05312 208 EMFLA------AAEALASL 220 (279)
T ss_pred HHHHH------HHHHHHHh
Confidence 99996 77888876
No 13
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1.5e-57 Score=497.09 Aligned_cols=237 Identities=35% Similarity=0.531 Sum_probs=208.1
Q ss_pred cccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCC-CCCC
Q psy14377 502 PGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLG-AYGM 580 (848)
Q Consensus 502 ~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG-~~gm 580 (848)
....++.++||++|||||+.+|+.++..++.++ +|.+|++ .++|||||+||||||||| .+||
T Consensus 38 ~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----~yt~~~n-------------~vaVvTDgtaVLGLGniGp~ag~ 100 (432)
T COG0281 38 TVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----SYTARGN-------------LVAVVTDGTAVLGLGNIGPLAGK 100 (432)
T ss_pred cccccCHhhcCcccCCchHHHHHHHHhCcchhh----hcCCCCc-------------eEEEEECCceeecccccccccCc
Confidence 455789999999999999999999776544443 3444443 699999999999999999 6689
Q ss_pred CccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecC
Q psy14377 581 GIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDF 660 (848)
Q Consensus 581 gIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf 660 (848)
+|++||++|||+||||| +||||||+||||+ +++||+++.++||. |++||+
T Consensus 101 pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e------------------------i~~~Vkal~p~Fgg---inLedi 150 (432)
T COG0281 101 PVMEGKAVLFKAFAGID---VLPIELDVGTNNE------------------------IIEFVKALEPTFGG---INLEDI 150 (432)
T ss_pred chhhhHHHHHHHhcCCC---ceeeEeeCCChHH------------------------HHHHHHHhhhcCCC---cceeec
Confidence 99999999999999999 9999999999887 68999999999977 777777
Q ss_pred CCcchHHHHHHHcc--cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccc--cc
Q psy14377 661 ANHSAFRFLDTYRN--RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRIT--KT 736 (848)
Q Consensus 661 ~~~naf~lL~ryr~--~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~--~~ 736 (848)
+.|.||.+++++|. .||||||||||||+|+||||+||+|++|++|+|+||||+|||+| |+|||+||+.+|++ +.
T Consensus 151 ~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAA--giaia~~l~~~g~~~~~i 228 (432)
T COG0281 151 DAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAA--GIAIADLLVAAGVKEENI 228 (432)
T ss_pred ccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHH--HHHHHHHHHHhCCCcccE
Confidence 77777777666555 59999999999999999999999999999999999999999999 99999999999999 67
Q ss_pred cccc-CceecCCCCCC-chHHHhh-hc-cccchhhccccCCCceEEeecCCCcch
Q psy14377 737 RLSD-NTILFQGAGEG-TASVAIA-GL-LASLRITKTRLSDNTILFQGSGEGTAS 787 (848)
Q Consensus 737 ~~~d-~g~i~~~r~~~-~~~~~~~-~~-~~~~r~~~~~~~~~~~~~~~s~~~~~~ 787 (848)
.+|| +|++|++|+.. |++|.-. .. .++.|+.++++.++|||+|+|+.|+-.
T Consensus 229 ~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~~~~~~~adv~iG~S~~G~~t 283 (432)
T COG0281 229 FVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTLDLALAGADVLIGVSGVGAFT 283 (432)
T ss_pred EEEecCCcccCCCcccccchHHHHHHHhhhccccccccccCCCEEEEcCCCCCcC
Confidence 7999 99999999985 8886555 44 777777677999999999999987643
No 14
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=1e-57 Score=532.23 Aligned_cols=235 Identities=24% Similarity=0.455 Sum_probs=214.1
Q ss_pred cchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCCCCC-CCc
Q psy14377 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAYG-MGI 582 (848)
Q Consensus 504 q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~g-mgI 582 (848)
..+|.++|+++|||||+++|+. ++++|+++| ++++||++ ++|||||+|||||||+|++| |+|
T Consensus 30 ~~~~~~dl~l~YtPgVa~~c~~---i~~~p~~~~-~~t~r~n~-------------v~VvtdG~~vLGLGdiG~~a~~pv 92 (764)
T PRK12861 30 PLVTQRDLALAYTPGVASACEE---IAADPLNAF-RFTSRGNL-------------VGVITNGTAVLGLGNIGALASKPV 92 (764)
T ss_pred ccCChHHceeecCCchHHHHHH---HHhChHhhh-hhhccCcE-------------EEEEecchhhccCCCcCcccccch
Confidence 3677889999999999999999 889999984 57777764 99999999999999999998 888
Q ss_pred cccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCC
Q psy14377 583 PVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFAN 662 (848)
Q Consensus 583 pvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~ 662 (848)
++||++|||+||||| ++|+|||| +|| ++|| |||++++++||. ||||||++
T Consensus 93 meGK~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~ 142 (764)
T PRK12861 93 MEGKAVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKA 142 (764)
T ss_pred HHHHHHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccC
Confidence 889999999999999 55666666 688 8998 999999999977 99999999
Q ss_pred cchHHHHHHHcc--cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccc--cccc
Q psy14377 663 HSAFRFLDTYRN--RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRIT--KTRL 738 (848)
Q Consensus 663 ~naf~lL~ryr~--~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~--~~~~ 738 (848)
||||++|+|||+ +||||||||||||+|+||||+||+|++|++|+|+||||+|||+| |+|||++|+..+++ +..+
T Consensus 143 p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaA--g~~ia~~l~~~G~~~~~i~~ 220 (764)
T PRK12861 143 PECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAA--ALACLDLLVDLGLPVENIWV 220 (764)
T ss_pred chHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHH--HHHHHHHHHHcCCChhhEEE
Confidence 999999999999 59999999999999999999999999999999999999999999 99999999999987 6678
Q ss_pred cc-CceecCCCCCCchH-HHhhhccccchhhccccCCCceEEeecCCCcch
Q psy14377 739 SD-NTILFQGAGEGTAS-VAIAGLLASLRITKTRLSDNTILFQGSGEGTAS 787 (848)
Q Consensus 739 ~d-~g~i~~~r~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~s~~~~~~ 787 (848)
+| +|+||++|+..++. +....-.|..++|+++++++|+|+|+|+.|+-+
T Consensus 221 ~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG~S~~g~ft 271 (764)
T PRK12861 221 TDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLGLSAGGVLK 271 (764)
T ss_pred EcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEEcCCCCCCC
Confidence 99 99999999987775 444566788899999999999999999877544
No 15
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=2.3e-56 Score=487.88 Aligned_cols=303 Identities=25% Similarity=0.359 Sum_probs=246.6
Q ss_pred hhccC-CccccccccCC--ccccccccCCc--CccCCcCccceeeec----ccChhhHHHHH----HhhccC--------
Q psy14377 101 ELKGL-SQRDFLSSWLN--RGPCLNCWGKR--DFEQDKQGISYSIHA----SLGIADLCVMA----MQKEGT-------- 159 (848)
Q Consensus 101 ~vk~M-~~~piifA~sn--~~~~i~atG~~--~fdypnQ~Nnv~vfp----~Lgl~~m~~~A----~~ala~-------- 159 (848)
-.+++ +++++.++||| +.+|..++-++ .|+|++++|.|+|++ .|||+|+++.| |++++.
T Consensus 37 ~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGi 116 (432)
T COG0281 37 PTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAYSYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGI 116 (432)
T ss_pred EcccccCHhhcCcccCCchHHHHHHHHhCcchhhhcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCC
Confidence 55666 89999999999 99999999888 889999999999999 89999999777 455542
Q ss_pred -------ChhhHhhhhhcccccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHH
Q psy14377 160 -------SEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLA 229 (848)
Q Consensus 160 -------~v~d~~~~ay~~~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~ 229 (848)
.+.+.+. +++-.-.+-| .|++|++++++.|+||+++.+|.++ .+|||| |||||+|+ +|||+|
T Consensus 117 d~~pI~ld~~~~~e---i~~~Vkal~p--~FgginLedi~ap~cf~ie~~lr~~--~~IPvFhDDqqGTaiv~-lA~lln 188 (432)
T COG0281 117 DVLPIELDVGTNNE---IIEFVKALEP--TFGGINLEDIDAPRCFAIEERLRYR--MNIPVFHDDQQGTAIVT-LAALLN 188 (432)
T ss_pred CceeeEeeCCChHH---HHHHHHHhhh--cCCCcceeecccchhhHHHHHHhhc--CCCCcccccccHHHHHH-HHHHHH
Confidence 1112222 2222444456 7779999999999999999988664 589999 99999999 999999
Q ss_pred HHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCc
Q psy14377 230 SLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPV 309 (848)
Q Consensus 230 Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~ 309 (848)
|+|++|++|+|+|||++|||+||+||+++|+.+ |++ .+||||||++|+++++|++..++.+|..++.+...
T Consensus 189 alk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~----g~~----~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~- 259 (432)
T COG0281 189 ALKLTGKKLKDQKIVINGAGAAGIAIADLLVAA----GVK----EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTG- 259 (432)
T ss_pred HHHHhCCCccceEEEEeCCcHHHHHHHHHHHHh----CCC----cccEEEEecCCcccCCCcccccchHHHHHHHhhhc-
Confidence 999999999999999999999999999999988 665 38999999999999999762233333322221100
Q ss_pred chhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecc
Q psy14377 310 KNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILG 389 (848)
Q Consensus 310 ~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g 389 (848)
.|.
T Consensus 260 ----------------------------------------------~~~------------------------------- 262 (432)
T COG0281 260 ----------------------------------------------ERT------------------------------- 262 (432)
T ss_pred ----------------------------------------------ccc-------------------------------
Confidence 000
Q ss_pred cccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCC
Q psy14377 390 LGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAEC 469 (848)
Q Consensus 390 ~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~ 469 (848)
+ ..++.++ |||||+ |+. |+||+|+||+|++ +|||||||||| ||+
T Consensus 263 --------------~---~~~~~~a--------dv~iG~-----S~~-G~~t~e~V~~Ma~---~PiIfalaNP~--pEi 306 (432)
T COG0281 263 --------------L---DLALAGA--------DVLIGV-----SGV-GAFTEEMVKEMAK---HPIIFALANPT--PEI 306 (432)
T ss_pred --------------c---cccccCC--------CEEEEc-----CCC-CCcCHHHHHHhcc---CCEEeecCCCC--ccC
Confidence 0 0134444 899998 666 9999999999996 49999999999 999
Q ss_pred CHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHH
Q psy14377 470 TAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEV 549 (848)
Q Consensus 470 tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~ei 549 (848)
+||+|.+|++|++|+|||||| +|+|+||+ +.|||++++++++++. +++++|+++ ..+.
T Consensus 307 ~Pe~a~~~~~~aaivaTGrsd----------~PnQvNNv-----L~FPgIfrGaLd~rA~-~ItdeM~~A------Aa~A 364 (432)
T COG0281 307 TPEDAKEWGDGAAIVATGRSD----------YPNQVNNV-----LIFPGIFRGALDVRAK-TITDEMKIA------AAEA 364 (432)
T ss_pred CHHHHhhcCCCCEEEEeCCCC----------Ccccccce-----eEcchhhhhhHhhccc-cCCHHHHHH------HHHH
Confidence 999999999999999999974 36699999 6789999999999985 799999997 6778
Q ss_pred HhcCCC
Q psy14377 550 LRNWPE 555 (848)
Q Consensus 550 L~Nwp~ 555 (848)
+++...
T Consensus 365 iA~~~~ 370 (432)
T COG0281 365 IADLAR 370 (432)
T ss_pred HHhhcc
Confidence 887643
No 16
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=3e-56 Score=522.56 Aligned_cols=299 Identities=25% Similarity=0.377 Sum_probs=258.3
Q ss_pred ccC-CccccccccCC--ccccccccCCc--CccCCcCccceeeec----ccChhhHHHHH----HhhccC----------
Q psy14377 103 KGL-SQRDFLSSWLN--RGPCLNCWGKR--DFEQDKQGISYSIHA----SLGIADLCVMA----MQKEGT---------- 159 (848)
Q Consensus 103 k~M-~~~piifA~sn--~~~~i~atG~~--~fdypnQ~Nnv~vfp----~Lgl~~m~~~A----~~ala~---------- 159 (848)
+++ +++||+++|+| +.+|..+.-+| .|+||+++|.|+|++ +|||+|+++.| |++++.
T Consensus 33 ~~~~~~~dl~~~ytpgv~~~~~~i~~~~~~~~~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK~~l~~~~~gi~~ 112 (763)
T PRK12862 33 KPLANQRDLALAYSPGVAAPCLEIAADPANAARYTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGKAVLFKKFAGIDV 112 (763)
T ss_pred CCCCCHHHceeeeCCchHHHHHHHHhChHhhhhcccCCcEEEEEechhhhccccccCcccccchHHHHHHHHHhhcCCCc
Confidence 344 89999999999 99998888888 899999999999999 89999999988 455541
Q ss_pred -Ch-hhHhhhhhcccccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHh
Q psy14377 160 -SE-QDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRIT 234 (848)
Q Consensus 160 -~v-~d~~~~ay~~~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~t 234 (848)
++ .+......+++..-.++| .|++|++||++.|+||++++++.+.+ ++|+| |||||+|+ +|||+||+|++
T Consensus 113 ~~i~~~~~d~d~~v~~v~~~~p--~f~~i~~ED~~~~~~f~i~~~~~~~~--~ip~f~DD~~GTa~v~-la~l~~a~~~~ 187 (763)
T PRK12862 113 FDIELDESDPDKLVEIVAALEP--TFGGINLEDIKAPECFYIERELRERM--KIPVFHDDQHGTAIIV-AAALLNGLKLV 187 (763)
T ss_pred cccccCCCCHHHHHHHHHHhCC--CcceeeeecccCchHHHHHHHHHhcC--CCceEecCcccHHHHH-HHHHHHHHHHh
Confidence 11 122223335666778888 77899999999999999999888764 69999 99999999 99999999999
Q ss_pred CCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhh
Q psy14377 235 KTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLAD 314 (848)
Q Consensus 235 g~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~ 314 (848)
|++|+|+||||+|||+||+|||++|+.+ |++ ++||||||++|||+++|++ .++++|.+|++.++.
T Consensus 188 ~~~~~~~~iv~~GaGaag~~~a~~l~~~----G~~----~~~i~~~D~~G~i~~~r~~-~l~~~~~~~a~~~~~------ 252 (763)
T PRK12862 188 GKDIEDVKLVASGAGAAALACLDLLVSL----GVK----RENIWVTDIKGVVYEGRTE-LMDPWKARYAQKTDA------ 252 (763)
T ss_pred CCChhhcEEEEEChhHHHHHHHHHHHHc----CCC----cccEEEEcCCCeeeCCCCc-cccHHHHHHhhhccc------
Confidence 9999999999999999999999999874 988 3899999999999999975 378888888775310
Q ss_pred hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCC
Q psy14377 315 VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLG 394 (848)
Q Consensus 315 ~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g 394 (848)
T Consensus 253 -------------------------------------------------------------------------------- 252 (763)
T PRK12862 253 -------------------------------------------------------------------------------- 252 (763)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHH
Q psy14377 395 AYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQA 474 (848)
Q Consensus 395 ~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a 474 (848)
-+|.+++++ | |||||+ |+ ||+||+|+||+|+ +||||||||||| |||+||||
T Consensus 253 ----------~~l~e~~~~--~------~v~iG~-----s~-~g~~~~~~v~~M~---~~piifalsNP~--~E~~p~~a 303 (763)
T PRK12862 253 ----------RTLAEVIEG--A------DVFLGL-----SA-AGVLKPEMVKKMA---PRPLIFALANPT--PEILPEEA 303 (763)
T ss_pred ----------CCHHHHHcC--C------CEEEEc-----CC-CCCCCHHHHHHhc---cCCEEEeCCCCc--ccCCHHHH
Confidence 146778887 4 899997 66 9999999999999 899999999999 89999999
Q ss_pred hccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377 475 YVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW 553 (848)
Q Consensus 475 ~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw 553 (848)
|+||+| +|||||+ +++|||+||+ +.|||++++++.+++. +++++|+++ ..+.|++.
T Consensus 304 ~~~~~~-~i~atGr----------s~~p~Q~NN~-----~~FPgi~~g~l~~~a~-~i~~~m~~a------aa~ala~~ 359 (763)
T PRK12862 304 RAVRPD-AIIATGR----------SDYPNQVNNV-----LCFPYIFRGALDVGAT-TINEEMKIA------AVRAIAEL 359 (763)
T ss_pred HHhcCC-EEEEECC----------cCCCCcccce-----eeccchhhhHHhcCCe-eCCHHHHHH------HHHHHHhc
Confidence 999998 9999996 6789999999 6689999999999985 799999997 66778776
No 17
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=5e-56 Score=518.40 Aligned_cols=300 Identities=25% Similarity=0.390 Sum_probs=259.4
Q ss_pred ccC-CccccccccCC--ccccccccCCc--CccCCcCccceeeec----ccChhhHHHHH----HhhccC----------
Q psy14377 103 KGL-SQRDFLSSWLN--RGPCLNCWGKR--DFEQDKQGISYSIHA----SLGIADLCVMA----MQKEGT---------- 159 (848)
Q Consensus 103 k~M-~~~piifA~sn--~~~~i~atG~~--~fdypnQ~Nnv~vfp----~Lgl~~m~~~A----~~ala~---------- 159 (848)
+++ +++|++++|+| +.+|..+.-+| .|+||+++|.|+|++ +|||+|+++.| |++++.
T Consensus 25 ~~~~~~~dl~~~Ytpgv~~~c~~i~~~~~~~~~~t~~~n~v~vvtdg~~vLGlGd~G~~a~~pv~egK~~l~~~~~gid~ 104 (752)
T PRK07232 25 KPLATQRDLSLAYSPGVAAPCLEIAKDPADAYKYTARGNLVAVISNGTAVLGLGNIGALASKPVMEGKGVLFKKFAGIDV 104 (752)
T ss_pred cccCChhhcceecCCchHHHHHHHHhChhhccccccCCcEEEEEccchhhccccccccccCccHHHHHHHHHHhhcCCCc
Confidence 445 89999999999 99998888787 899999999999999 89999999997 455552
Q ss_pred -Ch-hhHhhhhhcccccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHh
Q psy14377 160 -SE-QDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRIT 234 (848)
Q Consensus 160 -~v-~d~~~~ay~~~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~t 234 (848)
++ .+......+++..-.++| .|++|++||++.|+||++++++.+++ ++|+| |||||+|+ +|||+||+|++
T Consensus 105 ~~i~~~~~d~de~v~~v~~~~p--~~g~i~~ED~~~p~~f~i~~~~~~~~--~ip~f~DD~~GTa~v~-lA~l~na~~~~ 179 (752)
T PRK07232 105 FDIEVDEEDPDKFIEAVAALEP--TFGGINLEDIKAPECFYIEEKLRERM--DIPVFHDDQHGTAIIS-AAALLNALELV 179 (752)
T ss_pred cccccCCCCHHHHHHHHHHhCC--CccEEeeeecCCchHHHHHHHHHHhc--CCCeeccccchHHHHH-HHHHHHHHHHh
Confidence 11 122233345666778888 88899999999999999999988875 79999 99999999 99999999999
Q ss_pred CCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhh
Q psy14377 235 KTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLAD 314 (848)
Q Consensus 235 g~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~ 314 (848)
|++|+|+||||+|||+||+|||+||+.. |++ ++||||||++|+|+++|++ +++++|.+|++.++.
T Consensus 180 ~~~~~~~~iv~~GaGaag~~~a~~l~~~----G~~----~~~i~~~D~~G~i~~~r~~-~~~~~k~~~a~~~~~------ 244 (752)
T PRK07232 180 GKKIEDVKIVVSGAGAAAIACLNLLVAL----GAK----KENIIVCDSKGVIYKGRTE-GMDEWKAAYAVDTDA------ 244 (752)
T ss_pred CCChhhcEEEEECccHHHHHHHHHHHHc----CCC----cccEEEEcCCCeecCCCcc-cccHHHHHHhccCCC------
Confidence 9999999999999999999999999874 988 7899999999999999964 488888888775310
Q ss_pred hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCC
Q psy14377 315 VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLG 394 (848)
Q Consensus 315 ~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g 394 (848)
T Consensus 245 -------------------------------------------------------------------------------- 244 (752)
T PRK07232 245 -------------------------------------------------------------------------------- 244 (752)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHH
Q psy14377 395 AYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQA 474 (848)
Q Consensus 395 ~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a 474 (848)
.+|.+++++. |||||+ |+ ||+||+|+||+|+ +||||||||||| |||+||||
T Consensus 245 ----------~~l~~~i~~~--------~v~iG~-----s~-~g~~~~~~v~~M~---~~piifalsNP~--~E~~p~~a 295 (752)
T PRK07232 245 ----------RTLAEAIEGA--------DVFLGL-----SA-AGVLTPEMVKSMA---DNPIIFALANPD--PEITPEEA 295 (752)
T ss_pred ----------CCHHHHHcCC--------CEEEEc-----CC-CCCCCHHHHHHhc---cCCEEEecCCCC--ccCCHHHH
Confidence 1467788873 899997 66 9999999999999 699999999999 89999999
Q ss_pred hccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCC
Q psy14377 475 YVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWP 554 (848)
Q Consensus 475 ~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp 554 (848)
++||+| +|||||+ +++|||+||+ +.|||++++++.+++. +++++|+++ ..+.|++.-
T Consensus 296 ~~~~~~-~i~atGr----------s~~pnQ~NN~-----~~FPgi~~g~l~~~a~-~i~~~m~~a------aa~ala~~~ 352 (752)
T PRK07232 296 KAVRPD-AIIATGR----------SDYPNQVNNV-----LCFPYIFRGALDVGAT-TINEEMKLA------AVRAIAELA 352 (752)
T ss_pred HHhcCC-EEEEECC----------cCCCCcccce-----eecchhhHHHHHcCCc-cCCHHHHHH------HHHHHHhhc
Confidence 999999 9999996 6779999999 6689999999999985 799999997 667787763
No 18
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=1.5e-55 Score=513.98 Aligned_cols=299 Identities=24% Similarity=0.338 Sum_probs=252.1
Q ss_pred ccC-CccccccccCC--ccccccccCCc--CccCCcCccceeeec----ccChhhHHHHH----HhhccC----------
Q psy14377 103 KGL-SQRDFLSSWLN--RGPCLNCWGKR--DFEQDKQGISYSIHA----SLGIADLCVMA----MQKEGT---------- 159 (848)
Q Consensus 103 k~M-~~~piifA~sn--~~~~i~atG~~--~fdypnQ~Nnv~vfp----~Lgl~~m~~~A----~~ala~---------- 159 (848)
+++ +++||+++|+| +.+|..+.-+| .|+|++++|.|+|++ +|||+|+++.| |++++.
T Consensus 29 ~~~~~~~dl~l~YtPgVa~~c~~i~~~p~~~~~~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK~~L~~~~agid~ 108 (764)
T PRK12861 29 KPLVTQRDLALAYTPGVASACEEIAADPLNAFRFTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGIDV 108 (764)
T ss_pred cccCChHHceeecCCchHHHHHHHHhChHhhhhhhccCcEEEEEecchhhccCCCcCcccccchHHHHHHHHhhccCCCc
Confidence 444 89999999999 88998777777 899999999999999 89999999988 344441
Q ss_pred -Ch-hhHhhhhhcccccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHh
Q psy14377 160 -SE-QDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRIT 234 (848)
Q Consensus 160 -~v-~d~~~~ay~~~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~t 234 (848)
++ .+.....-+++-.-.+.| .|++|++||++.|+||++++++.+++ ++|+| |||||+|+ +|||+||+|++
T Consensus 109 ~di~~~~~dpd~~v~~v~a~~~--~fg~i~lED~~~p~~f~il~~~~~~~--~ipvf~DD~qGTa~v~-lA~llnal~~~ 183 (764)
T PRK12861 109 FDIEINETDPDKLVDIIAGLEP--TFGGINLEDIKAPECFTVERKLRERM--KIPVFHDDQHGTAITV-SAAFINGLKVV 183 (764)
T ss_pred cccccCCCCHHHHHHHHHHHHh--hcCCceeeeccCchHHHHHHHHHhcC--CCCeeccccchHHHHH-HHHHHHHHHHh
Confidence 11 111111123333445567 66789999999999999999887754 79999 99999999 99999999999
Q ss_pred CCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhh
Q psy14377 235 KTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLAD 314 (848)
Q Consensus 235 g~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~ 314 (848)
|++|+|+||||+|||+||+|||++++. +|++++ ||||||++|||+++|++ .++++|.+|++.++.
T Consensus 184 gk~l~d~~iv~~GAGaAg~~ia~~l~~----~G~~~~----~i~~~D~~Gli~~~r~~-~l~~~k~~~a~~~~~------ 248 (764)
T PRK12861 184 GKSIKEVKVVTSGAGAAALACLDLLVD----LGLPVE----NIWVTDIEGVVYRGRTT-LMDPDKERFAQETDA------ 248 (764)
T ss_pred CCChhHcEEEEECHhHHHHHHHHHHHH----cCCChh----hEEEEcCCCeeeCCCcc-cCCHHHHHHHhhcCC------
Confidence 999999999999999999999999876 499844 99999999999999975 378888888765310
Q ss_pred hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCC
Q psy14377 315 VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLG 394 (848)
Q Consensus 315 ~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g 394 (848)
T Consensus 249 -------------------------------------------------------------------------------- 248 (764)
T PRK12861 249 -------------------------------------------------------------------------------- 248 (764)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHH
Q psy14377 395 AYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQA 474 (848)
Q Consensus 395 ~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a 474 (848)
.+|.++++++ |||||+ |+ ||+||+|+||+|++ ||||||||||| |||+||||
T Consensus 249 ----------~~L~eai~~a--------dvliG~-----S~-~g~ft~e~v~~Ma~---~PIIFaLsNPt--pE~~pe~a 299 (764)
T PRK12861 249 ----------RTLAEVIGGA--------DVFLGL-----SA-GGVLKAEMLKAMAA---RPLILALANPT--PEIFPELA 299 (764)
T ss_pred ----------CCHHHHHhcC--------CEEEEc-----CC-CCCCCHHHHHHhcc---CCEEEECCCCC--ccCCHHHH
Confidence 1467788885 999997 65 99999999999994 99999999999 89999999
Q ss_pred hccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377 475 YVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW 553 (848)
Q Consensus 475 ~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw 553 (848)
++ |+|++|||||+ +++|||+||+ +.|||++++++.+++. +++++|+++ ..+.|++.
T Consensus 300 ~~-~~g~aivaTGr----------s~~pnQ~NN~-----l~FPgi~~Gal~~~a~-~I~~~M~~a------Aa~alA~~ 355 (764)
T PRK12861 300 HA-TRDDVVIATGR----------SDYPNQVNNV-----LCFPYIFRGALDVGAT-TITREMEIA------AVHAIAGL 355 (764)
T ss_pred Hh-cCCCEEEEeCC----------cCCCCcccee-----eecchhhHHHHHcCCc-cCCHHHHHH------HHHHHHhh
Confidence 88 99999999987 5779999999 6689999999999985 799999997 66777775
No 19
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=2.1e-55 Score=513.16 Aligned_cols=235 Identities=26% Similarity=0.463 Sum_probs=210.9
Q ss_pred ccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCCCC-CCC
Q psy14377 503 GQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAY-GMG 581 (848)
Q Consensus 503 ~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~-gmg 581 (848)
...++.++|+++|||||+++|+. ++++|+++| ++++||++ ++|||||+|||||||+|++ ||+
T Consensus 25 ~~~~~~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~n~-------------v~vvtdg~~vLGlGd~G~~a~~p 87 (752)
T PRK07232 25 KPLATQRDLSLAYSPGVAAPCLE---IAKDPADAY-KYTARGNL-------------VAVISNGTAVLGLGNIGALASKP 87 (752)
T ss_pred cccCChhhcceecCCchHHHHHH---HHhChhhcc-ccccCCcE-------------EEEEccchhhccccccccccCcc
Confidence 34678899999999999999996 889999999 78888874 9999999999999999999 788
Q ss_pred ccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCce-eeeeecC
Q psy14377 582 IPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHV-LIQFEDF 660 (848)
Q Consensus 582 IpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~~-~IqfEDf 660 (848)
|++||++|||+||||| ++ |+||||+ | +||||++++..| |+. .||||||
T Consensus 88 v~egK~~l~~~~~gid---~~----~i~~~~~----d-------------------~de~v~~v~~~~-p~~g~i~~ED~ 136 (752)
T PRK07232 88 VMEGKGVLFKKFAGID---VF----DIEVDEE----D-------------------PDKFIEAVAALE-PTFGGINLEDI 136 (752)
T ss_pred HHHHHHHHHHhhcCCC---cc----ccccCCC----C-------------------HHHHHHHHHHhC-CCccEEeeeec
Confidence 8889999999999999 55 5555565 4 478888888777 554 7999999
Q ss_pred CCcchHHHHHHHccc--CceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccc--cc
Q psy14377 661 ANHSAFRFLDTYRNR--YCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRIT--KT 736 (848)
Q Consensus 661 ~~~naf~lL~ryr~~--~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~--~~ 736 (848)
++||||++|+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+| |+|||+||+..+++ +.
T Consensus 137 ~~p~~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaa--g~~~a~~l~~~G~~~~~i 214 (752)
T PRK07232 137 KAPECFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAA--AIACLNLLVALGAKKENI 214 (752)
T ss_pred CCchHHHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHH--HHHHHHHHHHcCCCcccE
Confidence 999999999999997 7999999999999999999999999999999999999999999 99999999999985 66
Q ss_pred cccc-CceecCCCCCCchHHH-hhhccccchhhccccCCCceEEeecCCCcch
Q psy14377 737 RLSD-NTILFQGAGEGTASVA-IAGLLASLRITKTRLSDNTILFQGSGEGTAS 787 (848)
Q Consensus 737 ~~~d-~g~i~~~r~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~~~s~~~~~~ 787 (848)
.++| +|+|+++|+++++.+. ...-.|..++|+++++++|+|+|+|+.|+-+
T Consensus 215 ~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~s~~g~~~ 267 (752)
T PRK07232 215 IVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGLSAAGVLT 267 (752)
T ss_pred EEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEcCCCCCCC
Confidence 7899 9999999988887644 4466688899999999999999999977544
No 20
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=2.1e-55 Score=515.37 Aligned_cols=235 Identities=26% Similarity=0.438 Sum_probs=204.2
Q ss_pred cchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCCCCC-CCc
Q psy14377 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAYG-MGI 582 (848)
Q Consensus 504 q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~g-mgI 582 (848)
..++..+|+++|||||++.|+. |.++|+..| .+++|++ .++|||||||||||||+|++| |+|
T Consensus 34 ~~~~~~dl~~~ytpgv~~~~~~---i~~~~~~~~-~~t~~~n-------------~v~vvtdg~~vLGlGd~G~~~~~pv 96 (763)
T PRK12862 34 PLANQRDLALAYSPGVAAPCLE---IAADPANAA-RYTSRGN-------------LVAVVSNGTAVLGLGNIGPLASKPV 96 (763)
T ss_pred CCCCHHHceeeeCCchHHHHHH---HHhChHhhh-hcccCCc-------------EEEEEechhhhccccccCcccccch
Confidence 3567889999999999999999 888898877 4555554 499999999999999999997 999
Q ss_pred cccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCC
Q psy14377 583 PVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFAN 662 (848)
Q Consensus 583 pvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~ 662 (848)
++||++|||+||||| ++| +||||+ || ++|| ++|+++.++|| .||||||++
T Consensus 97 ~egK~~l~~~~~gi~---~~~----i~~~~~----d~---------------d~~v-~~v~~~~p~f~---~i~~ED~~~ 146 (763)
T PRK12862 97 MEGKAVLFKKFAGID---VFD----IELDES----DP---------------DKLV-EIVAALEPTFG---GINLEDIKA 146 (763)
T ss_pred HHHHHHHHHhhcCCC---ccc----cccCCC----CH---------------HHHH-HHHHHhCCCcc---eeeeecccC
Confidence 999999999999999 555 555565 77 4443 44444445554 599999999
Q ss_pred cchHHHHHHHccc--CceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccc--cccc
Q psy14377 663 HSAFRFLDTYRNR--YCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRIT--KTRL 738 (848)
Q Consensus 663 ~naf~lL~ryr~~--~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~--~~~~ 738 (848)
||||++|+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+| |+|||+||+..+++ +..+
T Consensus 147 ~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaa--g~~~a~~l~~~G~~~~~i~~ 224 (763)
T PRK12862 147 PECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAA--ALACLDLLVSLGVKRENIWV 224 (763)
T ss_pred chHHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHH--HHHHHHHHHHcCCCcccEEE
Confidence 9999999999998 8999999999999999999999999999999999999999999 99999999999986 6778
Q ss_pred cc-CceecCCCCCCchH-HHhhhccccchhhccccCCCceEEeecCCCcch
Q psy14377 739 SD-NTILFQGAGEGTAS-VAIAGLLASLRITKTRLSDNTILFQGSGEGTAS 787 (848)
Q Consensus 739 ~d-~g~i~~~r~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~s~~~~~~ 787 (848)
+| +|+|+++|+.+++. +...+-.+..++|+++++++|+|+|+|+.|+-+
T Consensus 225 ~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s~~g~~~ 275 (763)
T PRK12862 225 TDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLSAAGVLK 275 (763)
T ss_pred EcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcCCCCCCC
Confidence 99 99999999987765 334566678899999999999999999977543
No 21
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=4.3e-42 Score=363.21 Aligned_cols=196 Identities=38% Similarity=0.526 Sum_probs=172.8
Q ss_pred CcccccccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccC
Q psy14377 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKH 80 (848)
Q Consensus 1 llnal~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~ 80 (848)
|+||||++||+++|+||||+|||+||++||+||+.+|++.|++.|||++|||||||+|+|+++|++ |+++|++||+++
T Consensus 12 llnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~--l~~~~~~~a~~~ 89 (279)
T cd05312 12 LLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKD--LTPFKKPFARKD 89 (279)
T ss_pred HHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCc--chHHHHHHHhhc
Confidence 589999999999999999999999999999999999999999999999999999999999999998 999999999887
Q ss_pred C--CCCCHHHHhcccCCCchhh-----------hhccCC---ccccccccCC----------------ccccccccCCc-
Q psy14377 81 A--PVKNLADVVKTVKPSILIE-----------ELKGLS---QRDFLSSWLN----------------RGPCLNCWGKR- 127 (848)
Q Consensus 81 ~--~~~tL~ea~~~s~~~v~~g-----------~vk~M~---~~piifA~sn----------------~~~~i~atG~~- 127 (848)
+ ...+|+|+|+..|||+|+| +||.|+ +|||||+||| .++||++||+|
T Consensus 90 ~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf 169 (279)
T cd05312 90 EEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPF 169 (279)
T ss_pred CcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCC
Confidence 5 5579999999888999998 999996 9999999999 48999999964
Q ss_pred -------CccCCcCccceeeecccCh-----------hhHHHHHHhhccCChhhHhhhhhcccccccccCCCCCCCCccc
Q psy14377 128 -------DFEQDKQGISYSIHASLGI-----------ADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGH 189 (848)
Q Consensus 128 -------~fdypnQ~Nnv~vfp~Lgl-----------~~m~~~A~~ala~~v~d~~~~ay~~~~~G~lYPkppd~gIr~e 189 (848)
--+||||+||+|+||+||+ ++|+.+|+++||..+++++. ..+.+||+.. .++.+
T Consensus 170 ~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l------~~~~l~P~~~--~~r~v 241 (279)
T cd05312 170 PPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEEL------ARGRLYPPLS--NIREI 241 (279)
T ss_pred CCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCcccc------CCCeeeCCCc--cHhHH
Confidence 0158999999999997765 99999999999998877765 6799999444 56666
Q ss_pred cccccc---cchhhhhHHhh
Q psy14377 190 KVHYAK---KHAPVKNLADV 206 (848)
Q Consensus 190 dIavAk---~fe~ek~Lle~ 206 (848)
+..+|. .+++++++.+.
T Consensus 242 s~~VA~aVa~~A~~~gla~~ 261 (279)
T cd05312 242 SAQIAVAVAKYAYEEGLATR 261 (279)
T ss_pred HHHHHHHHHHHHHHcCCCCC
Confidence 666655 45566666654
No 22
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=8.7e-43 Score=364.53 Aligned_cols=184 Identities=33% Similarity=0.531 Sum_probs=155.7
Q ss_pred CcccccccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccC
Q psy14377 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKH 80 (848)
Q Consensus 1 llnal~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~ 80 (848)
|+|||+++||+++|+||||+|||+||++||+||+.+|.+.|+++|||++|||||||+|+|+++|++ |+++|++||+++
T Consensus 12 ll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~--l~~~~~~~a~~~ 89 (255)
T PF03949_consen 12 LLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDRED--LNPHKKPFARKT 89 (255)
T ss_dssp HHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSS--HSHHHHHHHBSS
T ss_pred HHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCcc--CChhhhhhhccC
Confidence 589999999999999999999999999999999999999999999999999999999999999987 999999999988
Q ss_pred CCCC---CHHHHhcccCCCchhh-----------hhccCC---ccccccccCC----------------ccccccccCCc
Q psy14377 81 APVK---NLADVVKTVKPSILIE-----------ELKGLS---QRDFLSSWLN----------------RGPCLNCWGKR 127 (848)
Q Consensus 81 ~~~~---tL~ea~~~s~~~v~~g-----------~vk~M~---~~piifA~sn----------------~~~~i~atG~~ 127 (848)
++.. +|+||+++.|||+|+| +|+.|+ +|||||+||| ++.||+|||+|
T Consensus 90 ~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t~g~ai~AtGSp 169 (255)
T PF03949_consen 90 NPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWTDGRAIFATGSP 169 (255)
T ss_dssp STTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTTTSEEEEEESS-
T ss_pred cccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhCCceEEEecCCc
Confidence 7544 9999999999999999 999994 5999999999 78899999944
Q ss_pred Cc---------cCCcCccceeeecccCh-----------hhHHHHHHhhccCChhhHhhhhhcccccccccCCCCCCCCc
Q psy14377 128 DF---------EQDKQGISYSIHASLGI-----------ADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVT 187 (848)
Q Consensus 128 ~f---------dypnQ~Nnv~vfp~Lgl-----------~~m~~~A~~ala~~v~d~~~~ay~~~~~G~lYPkppd~gIr 187 (848)
| +||||+||+|+||+||+ ++|+++|+++||..+++++. ..|.+||.++ .++
T Consensus 170 -f~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~------~~~~l~P~~~--~ir 240 (255)
T PF03949_consen 170 -FPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEEL------APGRLYPPLF--DIR 240 (255)
T ss_dssp ----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHH------HTTBSS-SGG--GHH
T ss_pred -cCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccC------CCCcccCCCC--cHh
Confidence 2 58999999999997655 99999999999999988877 6799999444 566
Q ss_pred cccccccc
Q psy14377 188 GHKVHYAK 195 (848)
Q Consensus 188 ~edIavAk 195 (848)
.++..+|.
T Consensus 241 ~vs~~VA~ 248 (255)
T PF03949_consen 241 EVSARVAA 248 (255)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 23
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=3e-41 Score=352.68 Aligned_cols=183 Identities=31% Similarity=0.472 Sum_probs=165.3
Q ss_pred CcccccccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhh---hc
Q psy14377 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVH---YA 77 (848)
Q Consensus 1 llnal~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~---~a 77 (848)
||||||++||+++|+||||+|||+||++||+||+.+|.+.|+++|||++|||||||+|+|+++|++ |+++|++ |+
T Consensus 12 llnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~--l~~~~~~~~~~~ 89 (254)
T cd00762 12 LLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKE--TCPNEYHLARFA 89 (254)
T ss_pred HHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCc--cCHHHHHHHHHc
Confidence 589999999999999999999999999999999999999999999999999999999999999998 9999988 88
Q ss_pred ccCCCCCCHHHHhcccCCCchhh-----------hhccCC---ccccccccCC----------------ccccccccCCc
Q psy14377 78 KKHAPVKNLADVVKTVKPSILIE-----------ELKGLS---QRDFLSSWLN----------------RGPCLNCWGKR 127 (848)
Q Consensus 78 ~~~~~~~tL~ea~~~s~~~v~~g-----------~vk~M~---~~piifA~sn----------------~~~~i~atG~~ 127 (848)
++..+..+|+||++..|||+|+| +|+.|+ +|||||+||| +++||++||||
T Consensus 90 ~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGsp 169 (254)
T cd00762 90 NPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSP 169 (254)
T ss_pred CcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCC
Confidence 87656679999999888999998 999996 9999999999 58899999999
Q ss_pred CccCCc----------CccceeeecccCh-----------hhHHHHHHhhccCChhhHhhhhhcccccccccCCCCCCCC
Q psy14377 128 DFEQDK----------QGISYSIHASLGI-----------ADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGV 186 (848)
Q Consensus 128 ~fdypn----------Q~Nnv~vfp~Lgl-----------~~m~~~A~~ala~~v~d~~~~ay~~~~~G~lYPkppd~gI 186 (848)
++|+ |+||+|+||+||+ ++|+++|+++||..+++++. ..|.+||... +|
T Consensus 170 --f~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l------~~~~i~P~~~--~i 239 (254)
T cd00762 170 --FHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESL------KPGRLYPPLF--DI 239 (254)
T ss_pred --CCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcC------CCCceeCCcc--hh
Confidence 6688 9999999997755 99999999999998887765 6799999444 56
Q ss_pred ccccccccc
Q psy14377 187 TGHKVHYAK 195 (848)
Q Consensus 187 r~edIavAk 195 (848)
+.++..+|.
T Consensus 240 r~vs~~VA~ 248 (254)
T cd00762 240 QEVSLNIAV 248 (254)
T ss_pred hhHHHHHHH
Confidence 666655544
No 24
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=1e-32 Score=284.14 Aligned_cols=194 Identities=30% Similarity=0.452 Sum_probs=161.1
Q ss_pred EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCC
Q psy14377 215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGG 294 (848)
Q Consensus 215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~ 294 (848)
||||++|+ +||+++|++.+|.+++|+|+||+|||+||.+||++|... |++ +++||++|++|+++.+|.+ .
T Consensus 1 ~qgt~~v~-lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~----G~~----~~~i~ivdr~gl~~~~r~~-~ 70 (226)
T cd05311 1 QHGTAIVT-LAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAA----GAK----PENIVVVDSKGVIYEGRED-D 70 (226)
T ss_pred CCchHHHH-HHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHc----CcC----cceEEEEeCCCccccccch-h
Confidence 79999999 999999999999999999999999999999999998764 877 6799999999999999864 3
Q ss_pred CCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhccc
Q psy14377 295 VTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKT 374 (848)
Q Consensus 295 l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~ 374 (848)
+.+++.++++.... .
T Consensus 71 L~~~~~~la~~~~~------------------------~----------------------------------------- 85 (226)
T cd05311 71 LNPDKNEIAKETNP------------------------E----------------------------------------- 85 (226)
T ss_pred hhHHHHHHHHHhcc------------------------C-----------------------------------------
Confidence 66555555442210 0
Q ss_pred ceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCC
Q psy14377 375 DIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKR 454 (848)
Q Consensus 375 ~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~r 454 (848)
++ ..+|.+++.+. |++||+ |+ +|+||+++++.|+ ++
T Consensus 86 ------------------------~~---~~~l~~~l~~~--------dvlIga-----T~-~G~~~~~~l~~m~---~~ 121 (226)
T cd05311 86 ------------------------KT---GGTLKEALKGA--------DVFIGV-----SR-PGVVKKEMIKKMA---KD 121 (226)
T ss_pred ------------------------cc---cCCHHHHHhcC--------CEEEeC-----CC-CCCCCHHHHHhhC---CC
Confidence 00 01344555542 889997 55 9999999999998 79
Q ss_pred ceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCc
Q psy14377 455 PIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPR 534 (848)
Q Consensus 455 PIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~ 534 (848)
||||+||||+ +||++++|++| |..||+||. ++.|+|+||+ +.|||+|++++.+++. ++|+
T Consensus 122 ~ivf~lsnP~--~e~~~~~A~~~--ga~i~a~G~----------~~~~~Q~nn~-----~~fPg~~~g~~~~~~~-~i~~ 181 (226)
T cd05311 122 PIVFALANPV--PEIWPEEAKEA--GADIVATGR----------SDFPNQVNNV-----LGFPGIFRGALDVRAT-KITE 181 (226)
T ss_pred CEEEEeCCCC--CcCCHHHHHHc--CCcEEEeCC----------CCCcccccee-----eecchhhHHHHHcCCc-CCCH
Confidence 9999999999 79999999999 555999995 4569999999 5689999999999985 7999
Q ss_pred cceeeccCcccHHHHHhcC
Q psy14377 535 GLFISIHDKGHISEVLRNW 553 (848)
Q Consensus 535 gm~L~~~d~g~i~eiL~Nw 553 (848)
+||++ ..+.|+++
T Consensus 182 ~m~~~------aa~~la~~ 194 (226)
T cd05311 182 EMKLA------AAEAIADL 194 (226)
T ss_pred HHHHH------HHHHHHhh
Confidence 99996 67788776
No 25
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=99.92 E-value=1.2e-25 Score=231.87 Aligned_cols=163 Identities=20% Similarity=0.290 Sum_probs=140.6
Q ss_pred CcccccccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccC
Q psy14377 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKH 80 (848)
Q Consensus 1 llnal~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~ 80 (848)
+++|+++.|++++|.|+||+|||.||.+++++|.. .|+++ ++||++|++|+++.+|.+. |+++|++|+++.
T Consensus 12 ~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~----~G~~~----~~i~ivdr~gl~~~~r~~~-L~~~~~~la~~~ 82 (226)
T cd05311 12 LLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA----AGAKP----ENIVVVDSKGVIYEGREDD-LNPDKNEIAKET 82 (226)
T ss_pred HHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH----cCcCc----ceEEEEeCCCccccccchh-hhHHHHHHHHHh
Confidence 46899999999999999999999999999999984 78863 6999999999999999863 899999998754
Q ss_pred C--CC-CCHHHHhcccCCCchhh----------hhccCCccccccccCC-----------cccc-ccccCCcCccCCcCc
Q psy14377 81 A--PV-KNLADVVKTVKPSILIE----------ELKGLSQRDFLSSWLN-----------RGPC-LNCWGKRDFEQDKQG 135 (848)
Q Consensus 81 ~--~~-~tL~ea~~~s~~~v~~g----------~vk~M~~~piifA~sn-----------~~~~-i~atG~~~fdypnQ~ 135 (848)
. +. .+|.|++++ +|++++ +++.|+++|++|.++| +..| |+++|++ .+|+|+
T Consensus 83 ~~~~~~~~l~~~l~~--~dvlIgaT~~G~~~~~~l~~m~~~~ivf~lsnP~~e~~~~~A~~~ga~i~a~G~~--~~~~Q~ 158 (226)
T cd05311 83 NPEKTGGTLKEALKG--ADVFIGVSRPGVVKKEMIKKMAKDPIVFALANPVPEIWPEEAKEAGADIVATGRS--DFPNQV 158 (226)
T ss_pred ccCcccCCHHHHHhc--CCEEEeCCCCCCCCHHHHHhhCCCCEEEEeCCCCCcCCHHHHHHcCCcEEEeCCC--CCcccc
Confidence 2 22 378899986 777777 8999999999999999 3346 8999999 779999
Q ss_pred cceeeecccCh-----------hhHHHHHHhhccCChhhHhhhhhcccccccccCCCC
Q psy14377 136 ISYSIHASLGI-----------ADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRP 182 (848)
Q Consensus 136 Nnv~vfp~Lgl-----------~~m~~~A~~ala~~v~d~~~~ay~~~~~G~lYPkpp 182 (848)
||+++||+||+ ++|..+|++++|..+++++. ..|.+||...
T Consensus 159 nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~------~~~~~~P~~~ 210 (226)
T cd05311 159 NNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVL------GEEYIIPTPF 210 (226)
T ss_pred ceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCcccc------CCCcccCCCC
Confidence 99999997766 99999999999998877665 6799999444
No 26
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=99.36 E-value=9.5e-14 Score=140.16 Aligned_cols=59 Identities=71% Similarity=1.219 Sum_probs=51.0
Q ss_pred ccceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccc
Q psy14377 373 KTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWR 431 (848)
Q Consensus 373 ~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~ 431 (848)
.++||.+||||++++|||||+|++||||++||++||++..|++|+.+|||.+++||||+
T Consensus 64 ~~~v~v~VVTDG~rILGlGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~ 122 (182)
T PF00390_consen 64 ERDVRVIVVTDGERILGLGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNE 122 (182)
T ss_dssp -SS--EEEEE-SSSBTTTBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-H
T ss_pred ccCceEEEEeCchhhccccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchh
Confidence 35899999999999999999999999999999999999999999999999999999986
No 27
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.39 E-value=0.0021 Score=57.25 Aligned_cols=55 Identities=33% Similarity=0.416 Sum_probs=47.1
Q ss_pred chhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 217 GESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 217 GTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+|+.+. ++.+..+.+..+.+++..+++|+|+|.+|.+++..+.+. | .++++++|+
T Consensus 1 ~t~~~~-~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~----~------~~~v~v~~r 55 (86)
T cd05191 1 ATAAGA-VALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE----G------GKKVVLCDR 55 (86)
T ss_pred ChhHHH-HHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc----C------CCEEEEEcC
Confidence 467777 889999999999999999999999999999999988764 4 357888877
No 28
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.10 E-value=0.0017 Score=57.89 Aligned_cols=55 Identities=38% Similarity=0.367 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccC
Q psy14377 685 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDN 741 (848)
Q Consensus 685 GTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~ 741 (848)
+|+.++++.+..+.+..+.+++..+++++|+|.. |.+++..+.+.+.+++.++|.
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~--g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEV--GKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHH--HHHHHHHHHHcCCCEEEEEcC
Confidence 6899999999999999999999999999999999 999999999976555555544
No 29
>PRK14031 glutamate dehydrogenase; Provisional
Probab=95.56 E-value=0.07 Score=61.71 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=94.4
Q ss_pred CCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCc--chHHHHHHHcccC----cee----------ccCCchHHHHHHH
Q psy14377 629 TTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANH--SAFRFLDTYRNRY----CVF----------NDDIQGTASVAVA 692 (848)
Q Consensus 629 ~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~--naf~lL~ryr~~~----~~F----------nDDiQGTaaV~LA 692 (848)
.+-.|...|.-.|+..+.+.+||+.-|--+|++.. .=--+.+.|+... -+| .+--+.||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 44566788889999999999999988888888752 2223566665431 233 3334567777788
Q ss_pred HHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCch
Q psy14377 693 GLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTA 753 (848)
Q Consensus 693 gllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~ 753 (848)
++-.+++..|.+|++.|++|.|.|.. |...|++|.+++.+-+.++| +|.+|.. .|.+
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNV--G~~aA~~L~e~GAkVVaVSD~~G~iy~~--~Gld 271 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNV--AQYTAEKVLELGGKVVTMSDSDGYIYDP--DGID 271 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEECCCCeEECC--CCCC
Confidence 88888888899999999999999999 99999999999988888899 9988854 4444
No 30
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.36 E-value=0.24 Score=55.30 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=33.9
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPE 66 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d 66 (848)
+.-||||+|+|.||++||+-|.. .|.+ -.|.|+|..-...-.|+.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~----~~~~-----~~I~li~~e~~~~y~r~~ 46 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQ----QGFT-----GELHLFSDERHLPYERPP 46 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHh----hCCC-----CCEEEeCCCCCCCCCCCC
Confidence 45689999999999999998874 5643 379999877554445554
No 31
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.09 E-value=0.12 Score=59.61 Aligned_cols=93 Identities=17% Similarity=0.305 Sum_probs=62.7
Q ss_pred cCceec----------cCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-Cce
Q psy14377 675 RYCVFN----------DDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTI 743 (848)
Q Consensus 675 ~~~~Fn----------DDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~ 743 (848)
.+|+|| |-..||+--++-++.. .++..+.+.+++|+|+|.- |.++|..+...++ ++.++| +..
T Consensus 173 ~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~I--G~~vA~~lr~~Ga-~ViV~d~dp~ 246 (425)
T PRK05476 173 KFPAINVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDV--GKGCAQRLRGLGA-RVIVTEVDPI 246 (425)
T ss_pred CCCEEecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHH--HHHHHHHHHhCCC-EEEEEcCCch
Confidence 389998 7778998777666654 3466789999999999999 9999999998876 565555 221
Q ss_pred ecCCCCCCchHHHhhhccccchhhccccCCCceEEeecC
Q psy14377 744 LFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSG 782 (848)
Q Consensus 744 i~~~r~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s~ 782 (848)
+. ......|.... .++++++++|++|...+
T Consensus 247 ----ra---~~A~~~G~~v~--~l~eal~~aDVVI~aTG 276 (425)
T PRK05476 247 ----CA---LQAAMDGFRVM--TMEEAAELGDIFVTATG 276 (425)
T ss_pred ----hh---HHHHhcCCEec--CHHHHHhCCCEEEECCC
Confidence 10 01111122111 24566778999987653
No 32
>PLN02477 glutamate dehydrogenase
Probab=94.63 E-value=0.25 Score=56.74 Aligned_cols=118 Identities=19% Similarity=0.140 Sum_probs=90.0
Q ss_pred CCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchH---HHHHHHccc----------Ccee----ccCCchHHHHHH
Q psy14377 629 TTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAF---RFLDTYRNR----------YCVF----NDDIQGTASVAV 691 (848)
Q Consensus 629 ~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf---~lL~ryr~~----------~~~F----nDDiQGTaaV~L 691 (848)
.+..+-..|...|++++.+-.||..-|-=+|++.. .. -+.++|+.. -|+. .+--.-||-=+.
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~-~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~ 190 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTN-AQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVV 190 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCC-HHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHH
Confidence 34566788899999999999998666667777653 22 245677651 1211 233345777778
Q ss_pred HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCC
Q psy14377 692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAG 749 (848)
Q Consensus 692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~ 749 (848)
.++-.+++..|.+|++.||+|.|.|.. |-..|++|.+.+.+-+.++| +|.+|...+
T Consensus 191 ~~~~~~~~~~g~~l~g~~VaIqGfGnV--G~~~A~~L~e~GakVVaVsD~~G~iy~~~G 247 (410)
T PLN02477 191 FATEALLAEHGKSIAGQTFVIQGFGNV--GSWAAQLIHEKGGKIVAVSDITGAVKNENG 247 (410)
T ss_pred HHHHHHHHHcCCCccCCEEEEECCCHH--HHHHHHHHHHcCCEEEEEECCCCeEECCCC
Confidence 888888888899999999999999999 99999999999987777999 999987554
No 33
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.57 E-value=0.2 Score=58.02 Aligned_cols=118 Identities=13% Similarity=0.140 Sum_probs=91.7
Q ss_pred CCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchH---HHHHHHcccC----------cee----ccCCchHHHHHH
Q psy14377 629 TTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAF---RFLDTYRNRY----------CVF----NDDIQGTASVAV 691 (848)
Q Consensus 629 ~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf---~lL~ryr~~~----------~~F----nDDiQGTaaV~L 691 (848)
.+..|-..|...|+.++.+.|||.+-|-=+|++. +.. -+.++|+.-. |+. .+--..||-=+.
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt-~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~ 216 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLV 216 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCC-CHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHH
Confidence 3445778899999999999999988888888874 322 2567776531 211 123446777777
Q ss_pred HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCC
Q psy14377 692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAG 749 (848)
Q Consensus 692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~ 749 (848)
.++..+++..+.+|++.||+|.|.|.. |...|++|...+.+-+.++| +|.+|...+
T Consensus 217 ~~~~~~~~~~~~~l~g~rVaIqGfGnV--G~~~A~~L~~~GakVVavsDs~G~iyn~~G 273 (445)
T PRK09414 217 YFAEEMLKARGDSFEGKRVVVSGSGNV--AIYAIEKAQQLGAKVVTCSDSSGYVYDEEG 273 (445)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEEcCCceEECCCC
Confidence 788888888899999999999999999 99999999999987778888 999986543
No 34
>PRK14030 glutamate dehydrogenase; Provisional
Probab=94.13 E-value=0.35 Score=56.14 Aligned_cols=117 Identities=13% Similarity=0.135 Sum_probs=91.1
Q ss_pred CCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHH---HHHHHccc----Cceec----------cCCchHHHHHH
Q psy14377 629 TTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFR---FLDTYRNR----YCVFN----------DDIQGTASVAV 691 (848)
Q Consensus 629 ~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~---lL~ryr~~----~~~Fn----------DDiQGTaaV~L 691 (848)
.+..|...|.-.|+..+.+-.||+.-|-=+|++. ++.+ +.+.|+.. ..++. +--..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 3445678889999999998889988888888874 3322 45666652 22221 11223777778
Q ss_pred HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCC
Q psy14377 692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGA 748 (848)
Q Consensus 692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r 748 (848)
.++-.+++..|.+|++.||+|-|.|.. |...|++|.+++.+-+.++| +|.||...
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnV--G~~aA~~L~e~GakvVavSD~~G~i~d~~ 268 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNV--AWGAATKATELGAKVVTISGPDGYIYDPD 268 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEEcCCceEECCC
Confidence 888888898899999999999999999 99999999999998888999 99998754
No 35
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=93.34 E-value=0.54 Score=54.74 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=91.2
Q ss_pred CCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHH---HHHHHccc---C-ceec----------cCCchHHHHHH
Q psy14377 629 TTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFR---FLDTYRNR---Y-CVFN----------DDIQGTASVAV 691 (848)
Q Consensus 629 ~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~---lL~ryr~~---~-~~Fn----------DDiQGTaaV~L 691 (848)
.+..|-..|...||..+.+..||..-|-=.|++. +..+ +.+.|+.- . .|+- +--.-||-=++
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 3455668899999999999999999999999884 3332 44555542 1 2211 11224777778
Q ss_pred HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCC
Q psy14377 692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGA 748 (848)
Q Consensus 692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r 748 (848)
.++-.+++..+.+|++.|++|-|.|.- |...|+.|.+.+.+-+.++| +|.||...
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnV--g~~aa~~L~e~GakVVavSD~~G~iy~~~ 277 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNV--AQYAVEKLLQLGAKVLTMSDSDGYIHEPN 277 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEEcCCCcEECCC
Confidence 888888999999999999999999999 99999999999987777999 99998654
No 36
>PRK14982 acyl-ACP reductase; Provisional
Probab=93.02 E-value=0.23 Score=55.73 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=70.7
Q ss_pred ceeeeeecCCCcchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCc-chhhHHHHHHHHHHH
Q psy14377 652 HVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGA-GEGTASVAVAGLLAS 730 (848)
Q Consensus 652 ~~~IqfEDf~~~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GA-G~A~~g~giA~ll~~ 730 (848)
++-|.||||.+-|++ |+++...++--|.+..+..|++.++++.|| |+- |--++++|..
T Consensus 119 ~i~ie~~~~TtGNs~-------------------T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~I--Gs~lar~L~~ 177 (340)
T PRK14982 119 NTTLEWERFTTGNTH-------------------TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDI--GSAVCRWLDA 177 (340)
T ss_pred cceeccccccCCchh-------------------HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHH--HHHHHHHHHh
Confidence 334666679999999 678888888889999999999999999999 899 9999999975
Q ss_pred h-cccccccccCceecCCCCC-CchHHHhhhccccchhhccccCCCceEEeecC
Q psy14377 731 L-RITKTRLSDNTILFQGAGE-GTASVAIAGLLASLRITKTRLSDNTILFQGSG 782 (848)
Q Consensus 731 ~-~~~~~~~~d~g~i~~~r~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s~ 782 (848)
. .++++.+.+ |.+ .-......-...+-..+.+++.++|+.|.+.+
T Consensus 178 ~~gv~~lilv~-------R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts 224 (340)
T PRK14982 178 KTGVAELLLVA-------RQQERLQELQAELGGGKILSLEEALPEADIVVWVAS 224 (340)
T ss_pred hCCCCEEEEEc-------CCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCc
Confidence 3 444544433 211 11111111001222346688999999886554
No 37
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.68 E-value=0.37 Score=52.35 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 219 SCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 219 A~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+.=+|..|++.+++-.+..++.++++|+|||.||.+++..+... | .++|+++|+.
T Consensus 106 G~NTD~~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~----G------~~~I~I~nR~ 160 (284)
T PRK12549 106 GHNTDWSGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTL----G------VERLTIFDVD 160 (284)
T ss_pred EEcCCHHHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHc----C------CCEEEEECCC
Confidence 34557789999998666678889999999999999999987754 7 4579998873
No 38
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=89.88 E-value=0.68 Score=50.61 Aligned_cols=54 Identities=22% Similarity=0.352 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 219 SCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 219 A~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+.=+|..|++.+++-.+..+++.+++++|||-|+.+|+-.+.. .| .++|+++++
T Consensus 103 G~NTD~~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~----~g------~~~i~i~nR 156 (288)
T PRK12749 103 GYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI----EG------LKEIKLFNR 156 (288)
T ss_pred EEecCHHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH----CC------CCEEEEEeC
Confidence 4466788999999988888999999999999998887776544 47 468998886
No 39
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=89.44 E-value=2.9 Score=51.67 Aligned_cols=42 Identities=12% Similarity=0.020 Sum_probs=31.7
Q ss_pred EEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCC
Q psy14377 17 ILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPE 66 (848)
Q Consensus 17 iV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d 66 (848)
|||+|+|.||+.+|+-+.. .+-+ .-.|+++|....+.-+|.-
T Consensus 1 iVIIG~G~AG~~aa~~l~~----~~~~----~~~Itvi~~e~~~~y~r~~ 42 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLK----LNRH----MFEITIFGEEPHPNYNRIL 42 (785)
T ss_pred CEEECCCHHHHHHHHHHHh----cCCC----CCeEEEEeCCCCCCccccc
Confidence 6899999999999997763 4311 1379999988877666654
No 40
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.31 E-value=0.96 Score=52.11 Aligned_cols=87 Identities=14% Similarity=0.250 Sum_probs=59.3
Q ss_pred cCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCchHHHhhh
Q psy14377 681 DDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTASVAIAG 759 (848)
Q Consensus 681 DDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~~~~~~~ 759 (848)
|...||+--++-+++. .++..+.+.+++|+|+|.- |.++|..+...++ ++.++| +. .....-...|
T Consensus 179 dn~~g~g~s~~~~i~r---~t~~~l~GktVvViG~G~I--G~~va~~ak~~Ga-~ViV~d~d~-------~R~~~A~~~G 245 (413)
T cd00401 179 DNLYGCRESLIDGIKR---ATDVMIAGKVAVVAGYGDV--GKGCAQSLRGQGA-RVIVTEVDP-------ICALQAAMEG 245 (413)
T ss_pred cccchhchhhHHHHHH---hcCCCCCCCEEEEECCCHH--HHHHHHHHHHCCC-EEEEEECCh-------hhHHHHHhcC
Confidence 6678999888777665 5577899999999999999 9999999998887 454444 22 1111112223
Q ss_pred ccccchhhccccCCCceEEeecC
Q psy14377 760 LLASLRITKTRLSDNTILFQGSG 782 (848)
Q Consensus 760 ~~~~~r~~~~~~~~~~~~~~~s~ 782 (848)
...- .+++++.++|++|..++
T Consensus 246 ~~~~--~~~e~v~~aDVVI~atG 266 (413)
T cd00401 246 YEVM--TMEEAVKEGDIFVTTTG 266 (413)
T ss_pred CEEc--cHHHHHcCCCEEEECCC
Confidence 3111 12456778999997654
No 41
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=89.03 E-value=0.84 Score=48.08 Aligned_cols=60 Identities=22% Similarity=0.198 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCC
Q psy14377 686 TASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQG 747 (848)
Q Consensus 686 TaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~ 747 (848)
||-=+..++-.+++..+.+|+..||+|.|.|.- |..+|++|.+.+.+.+.++| +|.+|..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnV--G~~~a~~L~~~G~~vV~vsD~~g~i~~~ 62 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNV--GWGLAKKLAEEGGKVLAVSDPDGYIYDP 62 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHH--HHHHHHHHHHcCCEEEEEEcCCCcEECC
Confidence 444456667778888889999999999999999 99999999999888889999 9988875
No 42
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=88.98 E-value=1.1 Score=42.93 Aligned_cols=50 Identities=28% Similarity=0.371 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 223 ~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
|..|+.+|++-.+..+++.+++|+|+|..|..++..+... | -++++++|+
T Consensus 2 d~~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~----g------~~~v~v~~r 51 (155)
T cd01065 2 DGLGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL----G------AAKIVIVNR 51 (155)
T ss_pred CHHHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC----C------CCEEEEEcC
Confidence 4568999999888889999999999999888888877542 4 256777765
No 43
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=88.97 E-value=1 Score=48.33 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=77.1
Q ss_pred cCCchHHHHHHHHHHHHHhhhCCc-CCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCchH----
Q psy14377 681 DDIQGTASVAVAGLLASLRITKTR-LSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTAS---- 754 (848)
Q Consensus 681 DDiQGTaaV~LAgllaAlr~t~~~-l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~~---- 754 (848)
|--+-||-=+..++-.+++..+.+ ++..|++|-|.|.- |...|+.|.+.+.+-+.++| +|.||. ++|.+.
T Consensus 5 ~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~V--G~~~a~~l~~~Ga~vv~vsD~~G~i~~--~~Gld~~~l~ 80 (244)
T PF00208_consen 5 GRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNV--GSHAARFLAELGAKVVAVSDSSGAIYD--PDGLDVEELL 80 (244)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHH--HHHHHHHHHHTTEEEEEEEESSEEEEE--TTEEHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHH--HHHHHHHHHHcCCEEEEEecCceEEEc--CCCchHHHHH
Confidence 344567777888888899987776 99999999999999 99999999999988888999 999995 445442
Q ss_pred --HHhhhc-cccch---------hhc--ccc-CCCceEEeecCCCcchhhhhh
Q psy14377 755 --VAIAGL-LASLR---------ITK--TRL-SDNTILFQGSGEGTASVAVAG 792 (848)
Q Consensus 755 --~~~~~~-~~~~r---------~~~--~~~-~~~~~~~~~s~~~~~~~~~~~ 792 (848)
++..+. +.+.. ... +.+ .++|||+=-.-+++-.-..+.
T Consensus 81 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~I~~~~~~ 133 (244)
T PF00208_consen 81 RIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNVINEDNAP 133 (244)
T ss_dssp HHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTSBSCHHHC
T ss_pred HHHHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCeeCHHHHH
Confidence 233333 22222 000 223 489999988666665544433
No 44
>PLN02494 adenosylhomocysteinase
Probab=88.93 E-value=1 Score=52.80 Aligned_cols=86 Identities=15% Similarity=0.268 Sum_probs=56.6
Q ss_pred cCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCchHHHhhh
Q psy14377 681 DDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTASVAIAG 759 (848)
Q Consensus 681 DDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~~~~~~~ 759 (848)
|-..||+--++-|++ |.|+..+...+++|+|.|.- |.++|+.+...++ ++.+.+ +.. .-..-...|
T Consensus 231 Dn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~I--Gr~vA~~aka~Ga-~VIV~e~dp~-------r~~eA~~~G 297 (477)
T PLN02494 231 DNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDV--GKGCAAAMKAAGA-RVIVTEIDPI-------CALQALMEG 297 (477)
T ss_pred hccccccccHHHHHH---HhcCCccCCCEEEEECCCHH--HHHHHHHHHHCCC-EEEEEeCCch-------hhHHHHhcC
Confidence 457888888877776 45777799999999999999 9999999987766 454443 221 000111112
Q ss_pred ccccchhhccccCCCceEEeec
Q psy14377 760 LLASLRITKTRLSDNTILFQGS 781 (848)
Q Consensus 760 ~~~~~r~~~~~~~~~~~~~~~s 781 (848)
.... .+++++..+||+|..+
T Consensus 298 ~~vv--~leEal~~ADVVI~tT 317 (477)
T PLN02494 298 YQVL--TLEDVVSEADIFVTTT 317 (477)
T ss_pred Ceec--cHHHHHhhCCEEEECC
Confidence 2111 2456777888888643
No 45
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=88.72 E-value=0.9 Score=49.28 Aligned_cols=54 Identities=20% Similarity=0.142 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHHhCC--cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 219 SCVNDVAGLLASLRITKT--RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 219 A~V~~lAgll~Al~~tg~--~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+.=+|..|++.+++-.+. .+++++++++|||.|+.+++..|.. .| .++|+++++
T Consensus 102 G~NTD~~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~----~G------~~~i~I~nR 157 (282)
T TIGR01809 102 GDNTDWDGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS----LG------VTDITVINR 157 (282)
T ss_pred EecCCHHHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH----cC------CCeEEEEeC
Confidence 456678899999987663 6889999999999999998887665 48 468998876
No 46
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=88.62 E-value=1.9 Score=49.38 Aligned_cols=48 Identities=27% Similarity=0.289 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.+++--|.+..+ .+++.+++|+|+|..|..++..+... | ..+++++|+
T Consensus 165 ~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~~----G------~~~V~v~~r 212 (417)
T TIGR01035 165 SAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLRK----G------VGKILIANR 212 (417)
T ss_pred HHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHHC----C------CCEEEEEeC
Confidence 555555555554 48889999999999999999887653 6 357888766
No 47
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=88.51 E-value=0.76 Score=44.38 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=30.9
Q ss_pred cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
++++.+++|+|||.+|.+++..|... | .++|++++|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~----g------~~~i~i~nR 44 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAAL----G------AKEITIVNR 44 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHT----T------SSEEEEEES
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHc----C------CCEEEEEEC
Confidence 78999999999999999998877654 7 568998775
No 48
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=88.36 E-value=0.98 Score=49.32 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 219 SCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 219 A~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+.=+|..|++.+++-.+..+++.+++++|||-|+.+|+-.|.+ .| .++|+++|+
T Consensus 106 G~NTD~~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~----~g------~~~i~i~nR 159 (283)
T PRK14027 106 GHNTDVSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT----HG------VQKLQVADL 159 (283)
T ss_pred EEcCCHHHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH----CC------CCEEEEEcC
Confidence 4456778999999865556888999999999999999887665 47 468988876
No 49
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=88.30 E-value=1.3 Score=44.75 Aligned_cols=91 Identities=21% Similarity=0.203 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhhhCCcCCCceEEecCc-chhhHHHHHHHHHHHhcccccccccCceecCCCCCCch-H-HHh----h
Q psy14377 686 TASVAVAGLLASLRITKTRLSDNTILFQGA-GEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTA-S-VAI----A 758 (848)
Q Consensus 686 TaaV~LAgllaAlr~t~~~l~d~riv~~GA-G~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~-~-~~~----~ 758 (848)
|++.+++.+..+++..+.++++.+++++|+ |.. |-.+++.+...+ .++.+.+ |..... . .+. .
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~i--G~~~a~~l~~~g-~~V~l~~-------R~~~~~~~l~~~l~~~~ 76 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPV--GQRAAVLLAREG-ARVVLVG-------RDLERAQKAADSLRARF 76 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHH--HHHHHHHHHHCC-CEEEEEc-------CCHHHHHHHHHHHHhhc
Confidence 677777777788877788999999999997 999 999999998765 2443322 211100 0 010 0
Q ss_pred hc------cccchhhccccCCCceEEeecCCCcc
Q psy14377 759 GL------LASLRITKTRLSDNTILFQGSGEGTA 786 (848)
Q Consensus 759 ~~------~~~~r~~~~~~~~~~~~~~~s~~~~~ 786 (848)
+. ..+...+.+.+.++|+.|..+.-|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~ 110 (194)
T cd01078 77 GEGVGAVETSDDAARAAAIKGADVVFAAGAAGVE 110 (194)
T ss_pred CCcEEEeeCCCHHHHHHHHhcCCEEEECCCCCce
Confidence 11 12233345678899999988777763
No 50
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=87.83 E-value=0.89 Score=52.45 Aligned_cols=112 Identities=20% Similarity=0.214 Sum_probs=77.2
Q ss_pred cchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCc
Q psy14377 663 HSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNT 742 (848)
Q Consensus 663 ~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g 742 (848)
..||..=+|+|..--. -.|--+|.-|++=-|.++.+. |++.+++|+|||.. |-.+|+.|...+++++.+++
T Consensus 139 qkAi~~gKrvRseT~I----~~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem--~~lva~~L~~~g~~~i~IaN-- 209 (414)
T COG0373 139 QKAISVGKRVRSETGI----GKGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEM--GELVAKHLAEKGVKKITIAN-- 209 (414)
T ss_pred HHHHHHHHHhhcccCC----CCCccchHHHHHHHHHHHhcc-cccCeEEEEcccHH--HHHHHHHHHhCCCCEEEEEc--
Confidence 4677777788875210 023334555555556666555 99999999999999 99999999999988866554
Q ss_pred eecCCCCCCchH--HHhh-hccccchhhccccCCCceEEeecCCCcchh
Q psy14377 743 ILFQGAGEGTAS--VAIA-GLLASLRITKTRLSDNTILFQGSGEGTASV 788 (848)
Q Consensus 743 ~i~~~r~~~~~~--~~~~-~~~~~~r~~~~~~~~~~~~~~~s~~~~~~~ 788 (848)
|+..-+. .+.. +-.....-+.+.|.++||.|..++.-..-+
T Consensus 210 -----RT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii 253 (414)
T COG0373 210 -----RTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPII 253 (414)
T ss_pred -----CCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCcccc
Confidence 4433332 2222 446667778899999999998876655444
No 51
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=87.67 E-value=1.6 Score=45.93 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKD 289 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~ 289 (848)
.-++-.+++-.+.+|+..|++|+|-|..|.+.|++|.+. | -+-+.+.|++|-++..
T Consensus 7 ~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~----G------~~vV~vsD~~g~i~~~ 62 (217)
T cd05211 7 VVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE----G------GKVLAVSDPDGYIYDP 62 (217)
T ss_pred HHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc----C------CEEEEEEcCCCcEECC
Confidence 446777888889999999999999999999999998764 7 5678899999988875
No 52
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=87.56 E-value=1.2 Score=48.41 Aligned_cols=54 Identities=22% Similarity=0.406 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 219 SCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 219 A~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+.-+|..|++.+++-.+..+++++++|.|||-+|.+|+..+.. .| .++|+++++
T Consensus 105 G~NTD~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~----~G------~~~V~I~~R 158 (289)
T PRK12548 105 GHITDGLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL----DG------AKEITIFNI 158 (289)
T ss_pred EEecCHHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH----CC------CCEEEEEeC
Confidence 4466788999999877778889999999999888777766544 48 457888776
No 53
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=87.54 E-value=3 Score=48.23 Aligned_cols=123 Identities=17% Similarity=0.201 Sum_probs=90.4
Q ss_pred cCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCc--chHHHHHHHcccC-----cee----------ccCCchHHHH
Q psy14377 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANH--SAFRFLDTYRNRY-----CVF----------NDDIQGTASV 689 (848)
Q Consensus 627 ~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~--naf~lL~ryr~~~-----~~F----------nDDiQGTaaV 689 (848)
|..+..|-.+|...|++++.+.-||+.-|-=+|++.. .=--+.+.|+.-. ++| .+----||-=
T Consensus 110 k~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~G 189 (411)
T COG0334 110 KGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYG 189 (411)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCccccee
Confidence 4467778899999999999999999999999999862 1122456665532 111 1222234422
Q ss_pred HHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCch
Q psy14377 690 AVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTA 753 (848)
Q Consensus 690 ~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~ 753 (848)
+.-+.-.|++.-+.+|+..||.|-|.|.. |.-.|+.+.+.+.+-+.++| +|.||.. .|.+
T Consensus 190 v~~~~~~a~~~~g~~l~G~rVaVQG~GNV--g~~aa~~l~~~GAkvva~sds~g~i~~~--~Gld 250 (411)
T COG0334 190 VFYAIREALKALGDDLEGARVAVQGFGNV--GQYAAEKLHELGAKVVAVSDSKGGIYDE--DGLD 250 (411)
T ss_pred hHHHHHHHHHHcCCCcCCCEEEEECccHH--HHHHHHHHHHcCCEEEEEEcCCCceecC--CCCC
Confidence 23333378888888899999999999999 99999999999887778888 9988876 4444
No 54
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.26 E-value=1.1 Score=49.14 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhhhCCcCCCceEEecCcch-hhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccch
Q psy14377 687 ASVAVAGLLASLRITKTRLSDNTILFQGAGE-GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLR 765 (848)
Q Consensus 687 aaV~LAgllaAlr~t~~~l~d~riv~~GAG~-A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r 765 (848)
+-.|-.|++..++-.+.+++.++++++|+|- + |-++|.+|....+ .+.+|+. + .+
T Consensus 139 ~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~v--Gkpia~~L~~~ga-tVtv~~~------~---------------t~ 194 (283)
T PRK14192 139 GSATPAGIMRLLKAYNIELAGKHAVVVGRSAIL--GKPMAMMLLNANA-TVTICHS------R---------------TQ 194 (283)
T ss_pred cCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHH--HHHHHHHHHhCCC-EEEEEeC------C---------------ch
Confidence 3455589999999999999999999999997 8 9999999988876 5555542 1 12
Q ss_pred hhccccCCCceEEeecC
Q psy14377 766 ITKTRLSDNTILFQGSG 782 (848)
Q Consensus 766 ~~~~~~~~~~~~~~~s~ 782 (848)
.+++.+.++||.+...+
T Consensus 195 ~L~~~~~~aDIvI~AtG 211 (283)
T PRK14192 195 NLPELVKQADIIVGAVG 211 (283)
T ss_pred hHHHHhccCCEEEEccC
Confidence 35666689999998875
No 55
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=87.17 E-value=1.4 Score=47.56 Aligned_cols=54 Identities=24% Similarity=0.244 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHH-hCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 219 SCVNDVAGLLASLRI-TKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 219 A~V~~lAgll~Al~~-tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+.-+|..|++++++- .+..+++.+++|+|+|.+|.+++..+.. .| ..+|+++++
T Consensus 101 G~NTD~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~----~g------~~~V~v~~R 155 (278)
T PRK00258 101 GDNTDGIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD----LG------VAEITIVNR 155 (278)
T ss_pred EEcccHHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH----cC------CCEEEEEeC
Confidence 445677889999984 5778999999999999999998887764 36 357888776
No 56
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=86.53 E-value=1.7 Score=47.19 Aligned_cols=63 Identities=21% Similarity=0.195 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCC
Q psy14377 685 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAG 749 (848)
Q Consensus 685 GTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~ 749 (848)
-||-=+.-++-.+++..+.+|++.|++|.|.|.. |...|++|.+.+.+-+.++| +|.+|...+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnV--G~~~a~~L~e~GakvvaVsD~~G~i~~~~G 79 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNV--AQYAAEKLLELGAKVVTLSDSKGYVYDPDG 79 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEECCCceEECCCC
Confidence 4665566777778888899999999999999999 99999999999877777999 999986553
No 57
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=86.27 E-value=1.3 Score=44.91 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhhCCcCCCceEEecCcch-hhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchh
Q psy14377 688 SVAVAGLLASLRITKTRLSDNTILFQGAGE-GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRI 766 (848)
Q Consensus 688 aV~LAgllaAlr~t~~~l~d~riv~~GAG~-A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~ 766 (848)
+++.|++-. ++-...+|.+.+++++|+|. . |..+|+.|...++ ++.++++- . ..
T Consensus 26 ~~~~a~v~l-~~~~~~~l~gk~vlViG~G~~~--G~~~a~~L~~~g~-~V~v~~r~-------~--------------~~ 80 (168)
T cd01080 26 CTPAGILEL-LKRYGIDLAGKKVVVVGRSNIV--GKPLAALLLNRNA-TVTVCHSK-------T--------------KN 80 (168)
T ss_pred ChHHHHHHH-HHHcCCCCCCCEEEEECCcHHH--HHHHHHHHhhCCC-EEEEEECC-------c--------------hh
Confidence 444444443 33345679999999999997 7 9999999988765 45544421 0 23
Q ss_pred hccccCCCceEEeecCCC
Q psy14377 767 TKTRLSDNTILFQGSGEG 784 (848)
Q Consensus 767 ~~~~~~~~~~~~~~s~~~ 784 (848)
+.+.+.++||.|...+..
T Consensus 81 l~~~l~~aDiVIsat~~~ 98 (168)
T cd01080 81 LKEHTKQADIVIVAVGKP 98 (168)
T ss_pred HHHHHhhCCEEEEcCCCC
Confidence 556889999999877664
No 58
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=85.86 E-value=1.4 Score=42.54 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=31.5
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
++++-|++++|||.+|-+++.-|.. .|+ ++|+++++
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~----~g~------~~i~i~nR 44 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAA----LGA------KEITIVNR 44 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHH----TTS------SEEEEEES
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHH----cCC------CEEEEEEC
Confidence 7899999999999999999998874 776 48999886
No 59
>KOG0685|consensus
Probab=85.74 E-value=0.96 Score=52.90 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=30.9
Q ss_pred ccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEc
Q psy14377 7 ITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVD 55 (848)
Q Consensus 7 i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~D 55 (848)
...+..++-||||+|||.||+++|+-|+. .|.. |+.++-
T Consensus 14 ~~~~~~~~~kIvIIGAG~AGLaAA~rLle----~gf~------~~~IlE 52 (498)
T KOG0685|consen 14 SGLKARGNAKIVIIGAGIAGLAAATRLLE----NGFI------DVLILE 52 (498)
T ss_pred hhhhccCCceEEEECCchHHHHHHHHHHH----hCCc------eEEEEE
Confidence 44577888899999999999999997773 6653 776654
No 60
>PLN00106 malate dehydrogenase
Probab=85.55 E-value=8.6 Score=43.06 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCcCCCceEEEecc-chHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 226 GLLASLRITKTRLSDNTILFQGA-GEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 226 gll~Al~~tg~~l~d~riv~~GA-GaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
.-+.|+|..|..-. .||+|.|| |..|..+|..+... ++ .+.+.++|.+-
T Consensus 5 ~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~~----~~-----~~el~L~Di~~ 54 (323)
T PLN00106 5 SSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKMN----PL-----VSELHLYDIAN 54 (323)
T ss_pred hhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHhC----CC-----CCEEEEEecCC
Confidence 44667777776655 69999999 99999999976642 43 35899999854
No 61
>KOG0029|consensus
Probab=85.43 E-value=1 Score=52.95 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=29.4
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.+.+.-||+|+|||.|||+||+.|.. .|.+ +++...+
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~----~G~~-------V~VLEAR 47 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQD----FGFD-------VLVLEAR 47 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHH----cCCc-------eEEEecc
Confidence 34456699999999999999999984 8974 6666654
No 62
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=85.19 E-value=2.6 Score=42.57 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCcCCCceEEEecc-chHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGA-GEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GA-GaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
++.+..+++-.|..+++.+++++|+ |..|..++..+... | .+++++++
T Consensus 12 v~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~----g-------~~V~l~~R 60 (194)
T cd01078 12 VAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLARE----G-------ARVVLVGR 60 (194)
T ss_pred HHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHC----C-------CEEEEEcC
Confidence 6667777777788999999999997 99999998877643 5 36777665
No 63
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=84.48 E-value=2.3 Score=40.82 Aligned_cols=87 Identities=21% Similarity=0.231 Sum_probs=56.8
Q ss_pred HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchH-HHhhhc---cccchhh
Q psy14377 692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTAS-VAIAGL---LASLRIT 767 (848)
Q Consensus 692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~-~~~~~~---~~~~r~~ 767 (848)
.|+.+|++..+..+++.+++|+|+|.. |..+++.+......++.+.+ -.++.... .+..+. ..+.-..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~--g~~~a~~l~~~g~~~v~v~~------r~~~~~~~~~~~~~~~~~~~~~~~~ 75 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGA--ARAVAYALAELGAAKIVIVN------RTLEKAKALAERFGELGIAIAYLDL 75 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHH--HHHHHHHHHHCCCCEEEEEc------CCHHHHHHHHHHHhhcccceeecch
Confidence 588999998888899999999999999 99999999876433443333 11111111 111121 1122233
Q ss_pred ccccCCCceEEeecCCCcc
Q psy14377 768 KTRLSDNTILFQGSGEGTA 786 (848)
Q Consensus 768 ~~~~~~~~~~~~~s~~~~~ 786 (848)
.+.+.++|+.+-....+..
T Consensus 76 ~~~~~~~Dvvi~~~~~~~~ 94 (155)
T cd01065 76 EELLAEADLIINTTPVGMK 94 (155)
T ss_pred hhccccCCEEEeCcCCCCC
Confidence 4447899999988877765
No 64
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=84.42 E-value=2.5 Score=48.77 Aligned_cols=54 Identities=20% Similarity=0.334 Sum_probs=42.3
Q ss_pred cCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 681 DDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 681 DDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
|.-.||+--++-+++ |.++..+...+++|+|.|.- |.++|..+...+. ++.+++
T Consensus 172 Dn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~I--G~~vA~~ak~~Ga-~ViV~d 225 (406)
T TIGR00936 172 DNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWC--GKGIAMRARGMGA-RVIVTE 225 (406)
T ss_pred hcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHH--HHHHHHHHhhCcC-EEEEEe
Confidence 667888876665554 45676789999999999999 9999999988775 455444
No 65
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=84.36 E-value=1.7 Score=42.80 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=25.8
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
||||+|+|.||++||.-+.. .|. +++++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~----~~~-------~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR----PGA-------KVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH----TTS-------EEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc----CCC-------eEEEEeccc
Confidence 69999999999999998773 554 788886544
No 66
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=84.25 E-value=1.8 Score=44.23 Aligned_cols=85 Identities=22% Similarity=0.381 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCchHHHhhhccc
Q psy14377 684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTASVAIAGLLA 762 (848)
Q Consensus 684 QGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~~~~~~~~~~ 762 (848)
.||+--++-|++ |.|+..|...++|++|-|-- |-|+|+.+...++ ++.+.+ +.+ .--+-..+|..+
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~v--G~g~A~~lr~~Ga-~V~V~e~DPi-------~alqA~~dGf~v 69 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKV--GKGIARALRGLGA-RVTVTEIDPI-------RALQAAMDGFEV 69 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHH--HHHHHHHHHHTT--EEEEE-SSHH-------HHHHHHHTT-EE
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcc--cHHHHHHHhhCCC-EEEEEECChH-------HHHHhhhcCcEe
Confidence 477777777776 46788899999999999999 9999999998874 444444 332 111233346644
Q ss_pred cchhhccccCCCceEEeecCC
Q psy14377 763 SLRITKTRLSDNTILFQGSGE 783 (848)
Q Consensus 763 ~~r~~~~~~~~~~~~~~~s~~ 783 (848)
. ++++++.++||||+..+.
T Consensus 70 ~--~~~~a~~~adi~vtaTG~ 88 (162)
T PF00670_consen 70 M--TLEEALRDADIFVTATGN 88 (162)
T ss_dssp E---HHHHTTT-SEEEE-SSS
T ss_pred c--CHHHHHhhCCEEEECCCC
Confidence 3 578899999999998775
No 67
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=83.68 E-value=1.3 Score=43.93 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=20.5
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHH
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMA 262 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~ 262 (848)
..+++++++|+|+|..+.-+|..|...
T Consensus 163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~ 189 (203)
T PF13738_consen 163 EDFKGKRVVVVGGGNSAVDIAYALAKA 189 (203)
T ss_dssp GGCTTSEEEEE--SHHHHHHHHHHTTT
T ss_pred hhcCCCcEEEEcChHHHHHHHHHHHhh
Confidence 368889999999999999888776643
No 68
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=83.62 E-value=1.7 Score=41.57 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=31.3
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
++.||+++|+|+-|.-+|+.|... | .++|.++|.+=+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~----G------v~~i~lvD~d~v 37 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS----G------VGKITLVDDDIV 37 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH----T------TSEEEEEESSBB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh----C------CCceeecCCcce
Confidence 368999999999999999998876 8 579999998644
No 69
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=82.49 E-value=3.8 Score=43.48 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR 290 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r 290 (848)
..++-.+++-.+..|++.||+|+|.|..|.+.|++|.+. | .+=+.+.|++|-++...
T Consensus 15 ~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~----g------~~vv~v~D~~g~~~~~~ 71 (227)
T cd01076 15 AYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA----G------AKVVAVSDSDGTIYNPD 71 (227)
T ss_pred HHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC----C------CEEEEEECCCCeEECCC
Confidence 457778888888999999999999999999999987764 6 34455999999998754
No 70
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=82.47 E-value=2.5 Score=46.39 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=70.0
Q ss_pred cchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCc
Q psy14377 663 HSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNT 742 (848)
Q Consensus 663 ~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g 742 (848)
.+|+++=++.|...-+. ++-.+|+.+++-.|.+..+. +.+.+++|+|+|.. |..+++.+...+.+++.+++
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~i--G~~~a~~L~~~g~~~V~v~~-- 209 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEM--GELAAKHLAAKGVAEITIAN-- 209 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHH--HHHHHHHHHHcCCCEEEEEe--
Confidence 46777777777764444 23345666666666655554 89999999999999 99999999886666655444
Q ss_pred eecCCCCCCch-H-HHhhhc-cccchhhccccCCCceEEeecCCCcc
Q psy14377 743 ILFQGAGEGTA-S-VAIAGL-LASLRITKTRLSDNTILFQGSGEGTA 786 (848)
Q Consensus 743 ~i~~~r~~~~~-~-~~~~~~-~~~~r~~~~~~~~~~~~~~~s~~~~~ 786 (848)
|...-. . ....|. ..+.-.+.+.+.++|+.|..++....
T Consensus 210 -----r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~ 251 (311)
T cd05213 210 -----RTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY 251 (311)
T ss_pred -----CCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch
Confidence 211110 1 111121 11111355677889999998886665
No 71
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=82.38 E-value=2.9 Score=46.05 Aligned_cols=54 Identities=26% Similarity=0.340 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHhC--CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 219 SCVNDVAGLLASLRITK--TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 219 A~V~~lAgll~Al~~tg--~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+.=+|--|+..+|+-.+ ...+.++++++|||-|+.+++-.|.++ | .++|++++|
T Consensus 103 G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~----g------~~~i~V~NR 158 (283)
T COG0169 103 GYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA----G------AKRITVVNR 158 (283)
T ss_pred EEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc----C------CCEEEEEeC
Confidence 44556778899988766 566789999999999999998876655 8 568998776
No 72
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=82.19 E-value=4 Score=44.36 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR 290 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r 290 (848)
.-++-.+++..+.+|+..|++|+|-|..|.+.|++|.+. | .+=+-+.|++|-++...
T Consensus 22 ~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~----G------akvvaVsD~~G~i~~~~ 78 (254)
T cd05313 22 VYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLEL----G------AKVVTLSDSKGYVYDPD 78 (254)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC----C------CEEEEEECCCceEECCC
Confidence 457778888889999999999999999999999988764 7 33344999999998754
No 73
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=82.01 E-value=2 Score=48.56 Aligned_cols=128 Identities=12% Similarity=0.154 Sum_probs=68.5
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcc----cCCCCCCHH
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAK----KHAPVKNLA 87 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~----~~~~~~tL~ 87 (848)
+..-|++|+|+|.+|..+++.+. .+|. +|+++|+.- .| +......|.. .......|+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~----~lGa-------~V~v~d~~~----~~----~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMAN----GLGA-------TVTILDINI----DR----LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHH----HCCC-------eEEEEECCH----HH----HHHHHHhcCceeEeccCCHHHHH
Confidence 56678999999999999999988 4784 588888731 11 1111111211 000113466
Q ss_pred HHhcccCCCchhh----------------hhccCCccccccccCC-ccccccccCCcCccCCc-CccceeeecccCh-hh
Q psy14377 88 DVVKTVKPSILIE----------------ELKGLSQRDFLSSWLN-RGPCLNCWGKRDFEQDK-QGISYSIHASLGI-AD 148 (848)
Q Consensus 88 ea~~~s~~~v~~g----------------~vk~M~~~piifA~sn-~~~~i~atG~~~fdypn-Q~Nnv~vfp~Lgl-~~ 148 (848)
++++. +|+++. +++.|.++.+++-+|- .+-++..+--+.+|+|- ..+.|..+-..++ ..
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~~e~~~~t~~d~p~~~~~Gv~~~~v~nlP~~ 303 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGCVETSRPTTHDQPTYAVHDVVHYCVANMPGA 303 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCCccCCcCCCCCCCEEEECCeEEEEeCCcccc
Confidence 66663 343332 6777776766665554 44455544322223221 2233444433344 45
Q ss_pred HHHHHHhhccCC
Q psy14377 149 LCVMAMQKEGTS 160 (848)
Q Consensus 149 m~~~A~~ala~~ 160 (848)
|-..|++.++..
T Consensus 304 ~p~~aS~~~~~~ 315 (370)
T TIGR00518 304 VPKTSTYALTNA 315 (370)
T ss_pred cHHHHHHHHHHH
Confidence 555566665543
No 74
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=81.90 E-value=1.9 Score=45.54 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=26.8
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
.+|+|+|||-||+++|.+|.+ .|. ++.++|++.-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~----~G~-------~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALAR----AGI-------DVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHH----TTC-------EEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHh----ccc-------ccccchhccc
Confidence 589999999999999999984 786 5888888554
No 75
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=81.70 E-value=1.9 Score=46.89 Aligned_cols=56 Identities=29% Similarity=0.310 Sum_probs=43.9
Q ss_pred cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 675 RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 675 ~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
++.=||=|-. |++.+++-.+..++.++++++|||.+ |-+++..|...+++++.+.|
T Consensus 103 ~l~G~NTD~~--------G~~~~l~~~~~~~~~k~vlIlGaGGa--araia~aL~~~G~~~I~I~n 158 (284)
T PRK12549 103 RRIGHNTDWS--------GFAESFRRGLPDASLERVVQLGAGGA--GAAVAHALLTLGVERLTIFD 158 (284)
T ss_pred EEEEEcCCHH--------HHHHHHHhhccCccCCEEEEECCcHH--HHHHHHHHHHcCCCEEEEEC
Confidence 3555777754 56667765555678899999999999 99999999999888777665
No 76
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=81.69 E-value=3.2 Score=45.23 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 219 SCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 219 A~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+.=+|..|++.+++-.+.+. +.+++++|||-|+.+++-.|.+ .| .++|+++++
T Consensus 102 G~NTD~~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~----~g------~~~i~i~nR 154 (272)
T PRK12550 102 AYNTDYIAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD----AG------FTDGTIVAR 154 (272)
T ss_pred EEecCHHHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH----CC------CCEEEEEeC
Confidence 44567889999998766653 4699999999999999887664 47 457888876
No 77
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=81.35 E-value=5.1 Score=46.47 Aligned_cols=48 Identities=29% Similarity=0.321 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
-|++--|-++.|. |++.+++|+|||..|..+|..|... | .++|+++.+
T Consensus 163 saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~----g------~~~i~IaNR 210 (414)
T COG0373 163 SAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK----G------VKKITIANR 210 (414)
T ss_pred HHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC----C------CCEEEEEcC
Confidence 4455555555554 9999999999999999999887764 7 568887554
No 78
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=81.27 E-value=3.6 Score=43.67 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=54.8
Q ss_pred chHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCC
Q psy14377 684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGE 750 (848)
Q Consensus 684 QGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~ 750 (848)
+-||-=+..++-.+++-.+.+|++.||+|.|.|.- |-++|++|.+.+.+-+.++| +|.+|...+=
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~V--G~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gl 73 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNV--GSHAARFLHEAGAKVVAVSDSDGTIYNPDGL 73 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEECCCCeEECCCCC
Confidence 45666677778888888888999999999999999 99999999999877777899 9988865543
No 79
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=81.22 E-value=2.2 Score=46.69 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=29.2
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEc
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVD 281 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD 281 (848)
.++++|+|+|.+|+-+|..|.....+.|. +.+|.+++
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~-----~~~V~li~ 181 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGL-----RGQVTLIA 181 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCC-----CceEEEEe
Confidence 36899999999999999999876655563 35787773
No 80
>PRK08328 hypothetical protein; Provisional
Probab=81.00 E-value=1.5 Score=46.27 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=32.7
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+|++.+|+++|+|..|..+|+.|..+ | .++|.++|.+
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~----G------vg~i~lvD~D 60 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAA----G------VGRILLIDEQ 60 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc----C------CCEEEEEcCC
Confidence 457788999999999999999988765 8 5799999875
No 81
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=80.83 E-value=1.8 Score=44.85 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=33.7
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
.+|++.||+|+|+|.-|..||..|..+ | .+++.++|.+=
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~----G------vg~i~lvD~D~ 55 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA----G------IGKLILVDFDV 55 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc----C------CCEEEEECCCE
Confidence 467889999999999999999998765 8 56899999863
No 82
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=80.68 E-value=2 Score=44.79 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=26.6
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+|||+|||.||+++|..|.. .|. ++.++|+.-
T Consensus 2 dvvIIG~G~aGl~aA~~l~~----~g~-------~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR----ANL-------KTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH----CCC-------CEEEEeccC
Confidence 68999999999999998763 674 689999753
No 83
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=80.52 E-value=3.2 Score=45.43 Aligned_cols=88 Identities=13% Similarity=0.254 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCC-chHHHhhhcc-c
Q psy14377 685 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEG-TASVAIAGLL-A 762 (848)
Q Consensus 685 GTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~-~~~~~~~~~~-~ 762 (848)
.+-+++=.++.-+++..+..|.+.+++|+|+|.. |..+|+.+...+. ++.+.+ |.+. .......|.. .
T Consensus 129 n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~i--G~avA~~L~~~G~-~V~v~~-------R~~~~~~~~~~~g~~~~ 198 (287)
T TIGR02853 129 NSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRT--GMTIARTFSALGA-RVFVGA-------RSSADLARITEMGLIPF 198 (287)
T ss_pred ccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHH--HHHHHHHHHHCCC-EEEEEe-------CCHHHHHHHHHCCCeee
Confidence 3344554556667777888999999999999999 9999999998775 544443 1110 1111112221 1
Q ss_pred cchhhccccCCCceEEeecC
Q psy14377 763 SLRITKTRLSDNTILFQGSG 782 (848)
Q Consensus 763 ~~r~~~~~~~~~~~~~~~s~ 782 (848)
..-.+.+.+.++|+.|-...
T Consensus 199 ~~~~l~~~l~~aDiVint~P 218 (287)
T TIGR02853 199 PLNKLEEKVAEIDIVINTIP 218 (287)
T ss_pred cHHHHHHHhccCCEEEECCC
Confidence 12235677889999997653
No 84
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=79.90 E-value=2 Score=44.45 Aligned_cols=38 Identities=32% Similarity=0.342 Sum_probs=33.4
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
++|++.+|+++|+|..|.-+|+.|..+ | .++|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~----G------v~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA----G------VGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc----C------CCeEEEecCC
Confidence 578899999999999999999988765 8 5799999985
No 85
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=79.73 E-value=5.9 Score=49.60 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=33.9
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPE 66 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d 66 (848)
.||||+|+|.||+.+|+-|.. .+.+. .-.|+|++..--+.-+|..
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~----~~~~~---~~~Itvi~~e~~~~Y~r~~ 48 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLD----KADAA---NFDITVFCEEPRIAYDRVH 48 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHh----hCCCC---CCeEEEEECCCCCcccCCc
Confidence 489999999999999987763 33221 1379999998877766764
No 86
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=79.68 E-value=1.1 Score=50.17 Aligned_cols=109 Identities=15% Similarity=0.241 Sum_probs=73.7
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhccc--CC--CCCCHH
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKK--HA--PVKNLA 87 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~--~~--~~~tL~ 87 (848)
+..-|++++|.|-+|+-.||+.+- +|. ++...|. ..+| |...+..|... +- ...+++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~g----lgA-------~Vtild~----n~~r----l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIG----LGA-------DVTILDL----NIDR----LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHhc----cCC-------eeEEEec----CHHH----HhhhhHhhCceeEEEEcCHHHHH
Confidence 577899999999999999997763 553 7777776 3333 34444445422 10 124699
Q ss_pred HHhcccCCCchhh----------------hhccCCccccccccCC-ccccccccCCc-Ccc---CCcCccceeeec
Q psy14377 88 DVVKTVKPSILIE----------------ELKGLSQRDFLSSWLN-RGPCLNCWGKR-DFE---QDKQGISYSIHA 142 (848)
Q Consensus 88 ea~~~s~~~v~~g----------------~vk~M~~~piifA~sn-~~~~i~atG~~-~fd---ypnQ~Nnv~vfp 142 (848)
|+++. +|++|| |+|.|.+-.++.=.|= .+-|+.-+ ++ ..| |.+-+=--+|+|
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~-~~TTh~~PtY~~~gvvhY~Va 299 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETS-HPTTHDDPTYEVDGVVHYGVA 299 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceecc-ccccCCCCceeecCEEEEecC
Confidence 99995 788888 8999988877776665 77788877 55 333 444554555555
No 87
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=78.83 E-value=2.2 Score=47.76 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=34.2
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
++|++.+|+|+|+|..|..+|+.|+.+ | ..+|.++|.+=
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a----G------vg~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA----G------IGKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc----C------CCEEEEEcCCc
Confidence 468889999999999999999998876 8 57999999864
No 88
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=78.82 E-value=5.5 Score=46.68 Aligned_cols=67 Identities=22% Similarity=0.263 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCc
Q psy14377 218 ESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTG 297 (848)
Q Consensus 218 TA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~ 297 (848)
|++=+ +.++-.+++..+.+|++.|++|+|.|..|...|+.|.+. | .+=+-+.|++|-|+... +++.
T Consensus 216 TG~Gv-~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~----G------akVVavSD~~G~iy~~~---Gld~ 281 (454)
T PTZ00079 216 TGYGL-VYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL----G------AKVLTMSDSDGYIHEPN---GFTK 281 (454)
T ss_pred cHHHH-HHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC----C------CEEEEEEcCCCcEECCC---CCCH
Confidence 55444 557888888899999999999999999999999988764 7 33444999999999764 3554
Q ss_pred c
Q psy14377 298 H 298 (848)
Q Consensus 298 ~ 298 (848)
.
T Consensus 282 ~ 282 (454)
T PTZ00079 282 E 282 (454)
T ss_pred H
Confidence 3
No 89
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=78.48 E-value=2.1 Score=44.84 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=33.1
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+|+..+|+++|+|..|..+|..|... | ..+|+++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~----G------vg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS----G------VGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc----C------CCeEEEEeCC
Confidence 467889999999999999999988765 8 5799999985
No 90
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=78.47 E-value=2.9 Score=45.83 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=44.2
Q ss_pred CceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 676 YCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 676 ~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
+.=||=|.. |++.+++-.+.++++.+++++|||-| +-+|+-.+...+++++.+.+
T Consensus 101 l~G~NTD~~--------Gf~~~l~~~~~~~~~k~vlvlGaGGa--arAi~~~l~~~g~~~i~i~n 155 (288)
T PRK12749 101 LRGYNTDGT--------GHIRAIKESGFDIKGKTMVLLGAGGA--STAIGAQGAIEGLKEIKLFN 155 (288)
T ss_pred EEEEecCHH--------HHHHHHHhcCCCcCCCEEEEECCcHH--HHHHHHHHHHCCCCEEEEEe
Confidence 455787854 56667776777889999999999999 99999999888887776655
No 91
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=78.26 E-value=2.3 Score=44.62 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=33.7
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
++|++.||+|+|+|..|..+|+.|..+ | .++|.++|.+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~----G------vg~i~lvD~D 54 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA----G------VGKLGLVDDD 54 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc----C------CCEEEEEcCC
Confidence 468889999999999999999998765 8 5799999986
No 92
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=78.22 E-value=7.1 Score=42.79 Aligned_cols=56 Identities=11% Similarity=0.253 Sum_probs=42.8
Q ss_pred EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+..+..+. =.++.-+++.++..|.+.+++|+|+|..|.++|+.+... |. +++++|+
T Consensus 127 ~~n~~~~A-e~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~----G~-------~V~v~~R 182 (287)
T TIGR02853 127 IYNSIPTA-EGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSAL----GA-------RVFVGAR 182 (287)
T ss_pred EEccHhHH-HHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHC----CC-------EEEEEeC
Confidence 34554554 445667777788899999999999999999999988754 62 5777766
No 93
>PRK14030 glutamate dehydrogenase; Provisional
Probab=78.16 E-value=5.7 Score=46.45 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=52.1
Q ss_pred hhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q psy14377 218 ESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR 290 (848)
Q Consensus 218 TA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r 290 (848)
|+.=+ +-++..+++..|.+|++.|++|+|.|..|...|+.|.+. | .+=+-+-|++|-|+...
T Consensus 207 Tg~Gv-~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~----G------akvVavSD~~G~i~d~~ 268 (445)
T PRK14030 207 TGFGA-LYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL----G------AKVVTISGPDGYIYDPD 268 (445)
T ss_pred cHHHH-HHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC----C------CEEEEEEcCCceEECCC
Confidence 55555 567888888889999999999999999999999988664 8 56778899999998754
No 94
>PRK14982 acyl-ACP reductase; Provisional
Probab=78.10 E-value=5.8 Score=44.82 Aligned_cols=55 Identities=16% Similarity=0.168 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHHHHHhCCcCCCceEEEecc-chHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 218 ESCVNDVAGLLASLRITKTRLSDNTILFQGA-GEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 218 TA~V~~lAgll~Al~~tg~~l~d~riv~~GA-GaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
|+++. ..++--+.+..+..|++.+++|.|| |+.|..++++|... .| .++++++++
T Consensus 134 T~~ll-~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~---~g------v~~lilv~R 189 (340)
T PRK14982 134 TAYVI-CRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK---TG------VAELLLVAR 189 (340)
T ss_pred HHHHH-HHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh---CC------CCEEEEEcC
Confidence 45565 6677788888899999999999999 89999999998642 23 357887665
No 95
>PRK08328 hypothetical protein; Provisional
Probab=77.93 E-value=2.4 Score=44.74 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=33.7
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+++.+-||+++|+|..|-.+++.|.. .|+ .+|.++|..=
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~----~Gv------g~i~lvD~D~ 61 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAA----AGV------GRILLIDEQT 61 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHH----cCC------CEEEEEcCCc
Confidence 46889999999999999999999884 787 4899999753
No 96
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=77.07 E-value=2.5 Score=45.14 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=33.4
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
++|++.||+++|+|..|..+|..|..+ | .++|.++|.+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~----G------vg~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA----G------VGNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc----C------CCEEEEEeCC
Confidence 468889999999999999999988765 8 5799999986
No 97
>PTZ00325 malate dehydrogenase; Provisional
Probab=77.01 E-value=14 Score=41.29 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.9
Q ss_pred CCHHHHHHHHhcCCCceEEecCCCC
Q psy14377 440 FTADILKDMAAFNKRPIIFALSNPT 464 (848)
Q Consensus 440 FTeevvk~Ma~~~~rPIIFaLSNPt 464 (848)
..+++++.|.+++.+.||+.-|||.
T Consensus 104 i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 104 IVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCcH
Confidence 4578999999999999999999997
No 98
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=76.99 E-value=2.6 Score=43.56 Aligned_cols=40 Identities=33% Similarity=0.473 Sum_probs=35.2
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+++++-||+++|+|.-|..+++.|.. .|+ ++|.++|..=+
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~----~GV------g~i~lvD~d~v 54 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVL----AGI------DSITIVDHRLV 54 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHH----cCC------CEEEEEECCcC
Confidence 57899999999999999999998884 787 48999998754
No 99
>PRK14031 glutamate dehydrogenase; Provisional
Probab=76.93 E-value=6.5 Score=45.96 Aligned_cols=69 Identities=25% Similarity=0.323 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCc
Q psy14377 218 ESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTG 297 (848)
Q Consensus 218 TA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~ 297 (848)
|+.=+ +-++-.+++..|.+|+++|++|+|.|..|...|++|.+. | .+=+-+.|++|-++... +++.
T Consensus 207 Tg~Gv-~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~----G------AkVVaVSD~~G~iy~~~---Gld~ 272 (444)
T PRK14031 207 TGYGN-IYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL----G------GKVVTMSDSDGYIYDPD---GIDR 272 (444)
T ss_pred cHHHH-HHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC----C------CEEEEEECCCCeEECCC---CCCH
Confidence 44444 557888888889999999999999999999999988765 7 44556799999887643 3554
Q ss_pred ccc
Q psy14377 298 HKV 300 (848)
Q Consensus 298 ~k~ 300 (848)
.+.
T Consensus 273 ~~l 275 (444)
T PRK14031 273 EKL 275 (444)
T ss_pred HHH
Confidence 433
No 100
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=76.18 E-value=3.3 Score=42.79 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=34.9
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++|.+-||+++|+|..|-.+++.|.. .|+ .+|+++|..=+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~----~Gv------~~i~lvD~d~v 56 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAG----AGV------GTIVIVDDDHV 56 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHH----cCC------CeEEEecCCEE
Confidence 68999999999999999999998884 787 48999998543
No 101
>PLN02477 glutamate dehydrogenase
Probab=76.11 E-value=7.3 Score=45.12 Aligned_cols=61 Identities=23% Similarity=0.199 Sum_probs=49.9
Q ss_pred hhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEE-EEcCCCcccCCC
Q psy14377 218 ESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIW-MVDSKGLIVKDR 290 (848)
Q Consensus 218 TA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~-~vD~kGLi~~~r 290 (848)
|+.=+ .-++-.+++..|.+|+..||+|+|.|..|.+.|++|.+. | -+|+ +.|++|-++...
T Consensus 185 Tg~Gv-~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~----G-------akVVaVsD~~G~iy~~~ 246 (410)
T PLN02477 185 TGRGV-VFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK----G-------GKIVAVSDITGAVKNEN 246 (410)
T ss_pred chHHH-HHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc----C-------CEEEEEECCCCeEECCC
Confidence 44444 557788888889999999999999999999999988654 6 2455 899999998754
No 102
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=75.99 E-value=4.6 Score=43.98 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=44.7
Q ss_pred cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 675 RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 675 ~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
++.=||-| ..|++.+++-.+..+++++++++|||-+ |-+||..+...+++++.+.+
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGa--grAia~~La~~G~~~V~I~~ 157 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGA--ATAIQVQCALDGAKEITIFN 157 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHH--HHHHHHHHHHCCCCEEEEEe
Confidence 46678888 4457777776666788899999999999 99999999998877666544
No 103
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=75.85 E-value=2.7 Score=43.40 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=35.2
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++|++-||+++|+|.-|..+++.|.. .|+ .+|.++|.+-+
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~----~GV------g~i~lvD~d~v 56 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVL----SGI------GSLTILDDRTV 56 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHH----cCC------CEEEEEECCcc
Confidence 57899999999999999999999984 787 49999998743
No 104
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=75.74 E-value=3.7 Score=44.64 Aligned_cols=56 Identities=29% Similarity=0.220 Sum_probs=43.5
Q ss_pred cCceeccCCchHHHHHHHHHHHHHhhhCC--cCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 675 RYCVFNDDIQGTASVAVAGLLASLRITKT--RLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 675 ~~~~FnDDiQGTaaV~LAgllaAlr~t~~--~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
++.=||=|.. |++.+++-.+. ++++.+++++|||.| +-+++..|...+++++.+.+
T Consensus 99 ~l~G~NTD~~--------G~~~~l~~~~~~~~~~~k~vlvlGaGGa--arai~~aL~~~G~~~i~I~n 156 (282)
T TIGR01809 99 IWKGDNTDWD--------GIAGALANIGKFEPLAGFRGLVIGAGGT--SRAAVYALASLGVTDITVIN 156 (282)
T ss_pred cEEEecCCHH--------HHHHHHHhhCCccccCCceEEEEcCcHH--HHHHHHHHHHcCCCeEEEEe
Confidence 3556888865 45666665553 578999999999999 99999999998888776654
No 105
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=75.66 E-value=3.2 Score=44.24 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=35.1
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+++++.||+++|+|..|-.+|+.|.. .|+ .+|.++|.+=+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~----~Gv------g~i~lvD~D~v 59 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAA----AGV------GNLTLLDFDTV 59 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHH----cCC------CEEEEEeCCcc
Confidence 57999999999999999999999884 787 48999998644
No 106
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=75.22 E-value=5.3 Score=43.85 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhcc-ccchhhc
Q psy14377 690 AVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLL-ASLRITK 768 (848)
Q Consensus 690 ~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~-~~~r~~~ 768 (848)
+-.++..+++..+..+...|++|+|+|.+ |..++..+...+. ++.+++. +++.-....+.|.. .....+.
T Consensus 135 aegav~~a~~~~~~~l~g~kvlViG~G~i--G~~~a~~L~~~Ga-~V~v~~r------~~~~~~~~~~~G~~~~~~~~l~ 205 (296)
T PRK08306 135 AEGAIMMAIEHTPITIHGSNVLVLGFGRT--GMTLARTLKALGA-NVTVGAR------KSAHLARITEMGLSPFHLSELA 205 (296)
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEECCcHH--HHHHHHHHHHCCC-EEEEEEC------CHHHHHHHHHcCCeeecHHHHH
Confidence 33355567777788899999999999999 9999999988775 5544441 11111122223331 1223456
Q ss_pred cccCCCceEEeecC
Q psy14377 769 TRLSDNTILFQGSG 782 (848)
Q Consensus 769 ~~~~~~~~~~~~s~ 782 (848)
+.+.++|+.|....
T Consensus 206 ~~l~~aDiVI~t~p 219 (296)
T PRK08306 206 EEVGKIDIIFNTIP 219 (296)
T ss_pred HHhCCCCEEEECCC
Confidence 77889999987543
No 107
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=75.20 E-value=3.5 Score=47.05 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=27.9
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
||||+|||.||+++|+-|.+ ++-+ -.|+++|+.-.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~----~~~~-----~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRR----LDKE-----SDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHh----hCCC-----CCEEEEECCCC
Confidence 89999999999999998874 4322 37999998643
No 108
>PRK07233 hypothetical protein; Provisional
Probab=75.19 E-value=3.3 Score=45.75 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=27.3
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
||||+|||-||+++|..|.+ .| .+++++++.-
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~----~G-------~~v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK----RG-------HEVTVFEADD 32 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH----CC-------CcEEEEEeCC
Confidence 68999999999999998884 67 3789998873
No 109
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=75.15 E-value=3.6 Score=46.09 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=35.2
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++|++-||+++|+|+.|-.+|+.|.. .|+ .+|.++|.+=+
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~----aGv------g~i~lvD~D~v 59 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVR----AGI------GKLTIADRDYV 59 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHH----cCC------CEEEEEcCCcc
Confidence 57899999999999999999999984 787 48999999754
No 110
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=75.07 E-value=3.9 Score=46.37 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=29.2
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++..|||+|||.||++||..+.. .| .++.++|++.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~----~g-------~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLAS----AG-------KKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHh----CC-------CEEEEEecCC
Confidence 35679999999999999998873 67 4799999864
No 111
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=75.02 E-value=1.1 Score=47.29 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=57.6
Q ss_pred eEEecCcchhhHHHHHHHHHHHhcccccccccCc-eecCCCCCCchHHHhhhccccchhhccc-cCCCceEEeecCCCcc
Q psy14377 709 TILFQGAGEGTASVAVAGLLASLRITKTRLSDNT-ILFQGAGEGTASVAIAGLLASLRITKTR-LSDNTILFQGSGEGTA 786 (848)
Q Consensus 709 riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g-~i~~~r~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~~~s~~~~~ 786 (848)
+|+|+|+|.- |..+|+.|.+.+..-..+.++. .+-+-..+.-..-..-|--|+...|+++ +.++|+++-+++.+-.
T Consensus 2 ~iiIiG~G~v--G~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~ 79 (225)
T COG0569 2 KIIIIGAGRV--GRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV 79 (225)
T ss_pred EEEEECCcHH--HHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence 7999999999 9999999999863322222222 1111111111112223557899999999 9999999999999887
Q ss_pred hhhhhhhhhe
Q psy14377 787 SVAVAGVLAS 796 (848)
Q Consensus 787 ~~~~~~~~~~ 796 (848)
...++-+...
T Consensus 80 N~i~~~la~~ 89 (225)
T COG0569 80 NSVLALLALK 89 (225)
T ss_pred HHHHHHHHHH
Confidence 7666655544
No 112
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=74.99 E-value=2.8 Score=43.31 Aligned_cols=39 Identities=36% Similarity=0.475 Sum_probs=34.0
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
++|++.+|+++|+|.-|.-+|+.|+.+ | .++|.++|.+=
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~----G------Vg~i~lvD~d~ 53 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA----G------IDSITIVDHRL 53 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc----C------CCEEEEEECCc
Confidence 467889999999999999999998776 9 57999999874
No 113
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=74.98 E-value=6.4 Score=42.18 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 221 VNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 221 V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
=+|..|++.+++-.+...+..+++|+|+|.+|.+++..+.+ .| .+++++|+
T Consensus 98 NTD~~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~----~g-------~~v~v~~R 148 (270)
T TIGR00507 98 NTDGIGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK----AD-------CNVIIANR 148 (270)
T ss_pred cCCHHHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH----CC-------CEEEEEeC
Confidence 45677888888754555667899999999888888887664 35 26777765
No 114
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.72 E-value=4.9 Score=44.42 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhhCCcCCCceEEecCcch-hhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchh
Q psy14377 688 SVAVAGLLASLRITKTRLSDNTILFQGAGE-GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRI 766 (848)
Q Consensus 688 aV~LAgllaAlr~t~~~l~d~riv~~GAG~-A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~ 766 (848)
-+|-+|++.-++-.+.+|++.+++++|+|. . |..+|.+|..... .+.+|+ . ++ +.
T Consensus 139 PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~V--G~pla~lL~~~ga-tVtv~~-----s-~t---------------~~ 194 (286)
T PRK14175 139 PCTPLGIMEILKHADIDLEGKNAVVIGRSHIV--GQPVSKLLLQKNA-SVTILH-----S-RS---------------KD 194 (286)
T ss_pred CCcHHHHHHHHHHcCCCCCCCEEEEECCCchh--HHHHHHHHHHCCC-eEEEEe-----C-Cc---------------hh
Confidence 457788888889999999999999999988 7 9999999987653 333333 1 11 24
Q ss_pred hccccCCCceEEeecCC
Q psy14377 767 TKTRLSDNTILFQGSGE 783 (848)
Q Consensus 767 ~~~~~~~~~~~~~~s~~ 783 (848)
+++.+++|||.|..-++
T Consensus 195 l~~~~~~ADIVIsAvg~ 211 (286)
T PRK14175 195 MASYLKDADVIVSAVGK 211 (286)
T ss_pred HHHHHhhCCEEEECCCC
Confidence 67788999999865544
No 115
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=74.52 E-value=6.1 Score=46.26 Aligned_cols=52 Identities=23% Similarity=0.364 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 220 CVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 220 ~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.=+|..|++.+++-.+..+++.+++|.|+|.+|.+++..+.. .| . +++++|+
T Consensus 312 ~NTD~~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~----~G------~-~V~i~~R 363 (477)
T PRK09310 312 YNTDGEGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR----AG------A-ELLIFNR 363 (477)
T ss_pred EecCHHHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH----CC------C-EEEEEeC
Confidence 345678999999988889999999999999888888877664 47 2 5776654
No 116
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=74.45 E-value=3.5 Score=44.00 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=33.8
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
++|++.||+|+|+|.-|..+|..|+.+ | .++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~----G------vg~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA----G------VGTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc----C------CCEEEEEcCC
Confidence 478899999999999999999998876 8 5799999986
No 117
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=74.43 E-value=3.8 Score=42.98 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=35.1
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++|.+.||+++|+|+.|-.+|+.|.. .|+ .+|.++|..=+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~----~Gv------g~i~lvD~D~v 56 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAA----AGV------GKLGLVDDDVV 56 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHH----cCC------CEEEEEcCCEE
Confidence 57899999999999999999999984 787 49999998644
No 118
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=74.42 E-value=6.8 Score=42.12 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCc-CCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCC
Q psy14377 224 VAGLLASLRITKTR-LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKD 289 (848)
Q Consensus 224 lAgll~Al~~tg~~-l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~ 289 (848)
..++-.+++..+.. +++.|++|+|.|..|...|+.+.+. | .+-+-+.|++|.|+..
T Consensus 15 ~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~----G------a~vv~vsD~~G~i~~~ 71 (244)
T PF00208_consen 15 AYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL----G------AKVVAVSDSSGAIYDP 71 (244)
T ss_dssp HHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT----T------EEEEEEEESSEEEEET
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc----C------CEEEEEecCceEEEcC
Confidence 45777888886666 9999999999999999999988765 7 4566778999999853
No 119
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=74.24 E-value=4.1 Score=42.34 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=34.6
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
.+|++.||+++|+|.-|-.+|..|.. .|+ .+|.++|.+=+
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~----~Gv------g~i~lvD~D~v 56 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLAR----AGI------GKLILVDFDVV 56 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHH----cCC------CEEEEECCCEE
Confidence 46889999999999999999999884 787 48999998744
No 120
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=74.12 E-value=4.5 Score=47.04 Aligned_cols=38 Identities=5% Similarity=0.122 Sum_probs=30.3
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
..+++++++|+|+|..|+-||..|... .++++++-+.+
T Consensus 200 ~~~~gk~VvVVG~G~Sg~diA~~L~~~-----------a~~V~l~~r~~ 237 (461)
T PLN02172 200 DPFKNEVVVVIGNFASGADISRDIAKV-----------AKEVHIASRAS 237 (461)
T ss_pred cccCCCEEEEECCCcCHHHHHHHHHHh-----------CCeEEEEEeec
Confidence 457899999999999999999987764 35777765543
No 121
>PRK06184 hypothetical protein; Provisional
Probab=73.95 E-value=4.2 Score=47.04 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=30.7
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+++.+|+|+|||.||+++|-+|.+ .|+ ++.++|+.--
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~----~Gi-------~v~viE~~~~ 37 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELAR----RGV-------SFRLIEKAPE 37 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHH----CCC-------cEEEEeCCCC
Confidence 467899999999999999998874 787 5788888543
No 122
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=73.90 E-value=7.5 Score=45.04 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=41.2
Q ss_pred EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.+||.-.+ +-+++ |.|+..+...+++|+|+|..|.++|..+... | . +++++|.
T Consensus 181 ~~g~g~s~-~~~i~---r~t~~~l~GktVvViG~G~IG~~va~~ak~~----G------a-~ViV~d~ 233 (413)
T cd00401 181 LYGCRESL-IDGIK---RATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ----G------A-RVIVTEV 233 (413)
T ss_pred cchhchhh-HHHHH---HhcCCCCCCCEEEEECCCHHHHHHHHHHHHC----C------C-EEEEEEC
Confidence 56887666 66666 4578889999999999999999999977654 7 2 4666665
No 123
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=73.87 E-value=10 Score=39.31 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=38.6
Q ss_pred HHHHHHHHHHh--CCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 224 VAGLLASLRIT--KTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 224 lAgll~Al~~t--g~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
..++-.+++.. +.+|++.+++|+|.|..|..+|+.|.+. | -+++.+|++
T Consensus 10 ~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~----G-------~~Vvv~D~~ 60 (200)
T cd01075 10 FLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE----G-------AKLIVADIN 60 (200)
T ss_pred HHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC----C-------CEEEEEcCC
Confidence 44666777774 8899999999999999999999987754 7 257777653
No 124
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=73.84 E-value=2.8 Score=40.06 Aligned_cols=38 Identities=32% Similarity=0.358 Sum_probs=32.5
Q ss_pred CCceEEecCcchhhHHHHHHHHHHHhcccccccccCceec
Q psy14377 706 SDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILF 745 (848)
Q Consensus 706 ~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~ 745 (848)
++.||+++|+|+- |.-+|+.|...++.+..+.|...+.
T Consensus 1 r~~~v~iiG~G~v--Gs~va~~L~~~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 1 RNKRVLIIGAGGV--GSEVAKNLARSGVGKITLVDDDIVE 38 (135)
T ss_dssp HT-EEEEESTSHH--HHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred CCCEEEEECcCHH--HHHHHHHHHHhCCCceeecCCccee
Confidence 3689999999999 9999999999999999988866554
No 125
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=73.78 E-value=7.2 Score=33.95 Aligned_cols=35 Identities=11% Similarity=0.353 Sum_probs=30.3
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIV 61 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~ 61 (848)
|+||+|+|..|+-+|..+. +.| .++.|+++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~----~~g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALA----ELG-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHH----HTT-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHH----HhC-------cEEEEEeccchhh
Confidence 7999999999999999887 477 4789999888776
No 126
>PRK07236 hypothetical protein; Provisional
Probab=73.55 E-value=4.6 Score=44.78 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=29.4
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
++..+|+|+|||-||+++|.+|.+ .|+ ++.++|+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~----~G~-------~v~v~E~~ 38 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR----AGW-------DVDVFERS 38 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh----CCC-------CEEEEecC
Confidence 567899999999999999999984 786 57777764
No 127
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=73.45 E-value=5.9 Score=34.21 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=24.0
Q ss_pred EeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 19 FQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 19 ~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
|+|||.||+++|..|.+ .| .+|.++|+.--
T Consensus 1 IiGaG~sGl~aA~~L~~----~g-------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK----AG-------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHH----TT-------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHH----CC-------CcEEEEecCcc
Confidence 68999999999999985 45 48999998654
No 128
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.44 E-value=7.3 Score=42.86 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHhCCcCCCceEEEeccch-HHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 220 CVNDVAGLLASLRITKTRLSDNTILFQGAGE-ASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 220 ~V~~lAgll~Al~~tg~~l~d~riv~~GAGa-Ag~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
..++ .|++..++-.+.+++.++++++|+|- +|..+|.+|... | . .+.+|++
T Consensus 140 p~T~-~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~----g------a-tVtv~~~ 191 (283)
T PRK14192 140 SATP-AGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNA----N------A-TVTICHS 191 (283)
T ss_pred CCcH-HHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhC----C------C-EEEEEeC
Confidence 3443 68999999999999999999999997 999999987643 5 2 6888876
No 129
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=73.26 E-value=4.3 Score=45.82 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=29.6
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIV 61 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~ 61 (848)
||||+|||.||+++|.-+.. +|-. -+|.|+|++..+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~----~~~~-----~~Vtli~~~~~~~ 38 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKR----LNKE-----LEITVYEKTDIVS 38 (444)
T ss_pred eEEEECCcHHHHHHHHHHHH----HCCC-----CcEEEEECCCcce
Confidence 89999999999999997763 4432 3899999876543
No 130
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=73.15 E-value=7.8 Score=42.64 Aligned_cols=48 Identities=23% Similarity=0.237 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.+++-.+....+. +.+.+|+|+|+|..|..++..+.. .| .++|+++|+
T Consensus 163 ~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~----~g------~~~V~v~~r 210 (311)
T cd05213 163 SAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAA----KG------VAEITIANR 210 (311)
T ss_pred HHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHH----cC------CCEEEEEeC
Confidence 3445555554444 889999999999999999887764 25 467888776
No 131
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=72.93 E-value=5.2 Score=43.19 Aligned_cols=96 Identities=25% Similarity=0.304 Sum_probs=59.8
Q ss_pred cCceeccCCchHHHHHHHHHHHHHhh-hCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCch
Q psy14377 675 RYCVFNDDIQGTASVAVAGLLASLRI-TKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTA 753 (848)
Q Consensus 675 ~~~~FnDDiQGTaaV~LAgllaAlr~-t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~ 753 (848)
++.-||=|.. |++++++- .+..+++.+++++|+|.+ |-+++..|...+++++.+.+.- .+.-.
T Consensus 98 ~l~G~NTD~~--------G~~~~l~~~~~~~~~~k~vlVlGaGg~--a~ai~~aL~~~g~~~V~v~~R~------~~~a~ 161 (278)
T PRK00258 98 RLIGDNTDGI--------GFVRALEERLGVDLKGKRILILGAGGA--ARAVILPLLDLGVAEITIVNRT------VERAE 161 (278)
T ss_pred EEEEEcccHH--------HHHHHHHhccCCCCCCCEEEEEcCcHH--HHHHHHHHHHcCCCEEEEEeCC------HHHHH
Confidence 4666777754 45666653 466789999999999999 9999999998887776655421 00000
Q ss_pred HH-Hhhhcc--ccc-hhhccccCCCceEEeecCCCcc
Q psy14377 754 SV-AIAGLL--ASL-RITKTRLSDNTILFQGSGEGTA 786 (848)
Q Consensus 754 ~~-~~~~~~--~~~-r~~~~~~~~~~~~~~~s~~~~~ 786 (848)
.. +..+-. .+- -.+.+.+.++||.+..+.-|..
T Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~ 198 (278)
T PRK00258 162 ELAKLFGALGKAELDLELQEELADFDLIINATSAGMS 198 (278)
T ss_pred HHHHHhhhccceeecccchhccccCCEEEECCcCCCC
Confidence 11 111100 000 0223567889999988776653
No 132
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=72.84 E-value=4.1 Score=42.68 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=34.1
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+++++.||+++|+|..|-.+|+.|.. .|+ .+|+++|..=
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~----~Gv------g~i~lvD~D~ 62 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALAR----SGV------GNLKLVDFDV 62 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHH----cCC------CeEEEEeCCE
Confidence 57889999999999999999999884 787 4899999853
No 133
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=72.72 E-value=5.4 Score=39.27 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=24.3
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+|||+|+|.||+..|..+... | .+++++|+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~----~-------~~v~ii~~ 30 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP----G-------AKVLIIEK 30 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT----T-------SEEEEESS
T ss_pred CEEEEecHHHHHHHHHHHhcC----C-------CeEEEEec
Confidence 689999999999999988832 4 46787754
No 134
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=72.48 E-value=5 Score=43.92 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=43.1
Q ss_pred cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 675 RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 675 ~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
+++=||=|-. |++.+++-.+..+++.+++++|||-| +-+|+-.|.+.+++++.+.+
T Consensus 103 ~l~G~NTD~~--------Gf~~~L~~~~~~~~~k~vlilGaGGa--arAi~~aL~~~g~~~i~i~n 158 (283)
T PRK14027 103 HTTGHNTDVS--------GFGRGMEEGLPNAKLDSVVQVGAGGV--GNAVAYALVTHGVQKLQVAD 158 (283)
T ss_pred cEEEEcCCHH--------HHHHHHHhcCcCcCCCeEEEECCcHH--HHHHHHHHHHCCCCEEEEEc
Confidence 3566777754 46667764444677889999999999 99999999998887766554
No 135
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=72.47 E-value=4.7 Score=43.24 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=28.4
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+..|+|+|||.||++||..+. +.|+ +++++|++.
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la----~~G~-------~V~liEk~~ 58 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLA----KAGL-------KVAVFERKL 58 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHH----hCCC-------eEEEEecCC
Confidence 4578999999999999999776 3675 688888754
No 136
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=72.39 E-value=4.8 Score=44.19 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=28.9
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhc---CCCccccCCeEEEEcCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKE---GTSEQDARDKIWMVDSK 57 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~---G~~~e~~~~ni~m~Dsk 57 (848)
++..+|+|+|||.||+++|-+|.. . |. ++.++|+.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~----~~~~G~-------~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSR----LSHGGL-------PVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhh----cccCCC-------EEEEEeCC
Confidence 356789999999999999999874 5 75 68888874
No 137
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=72.38 E-value=5 Score=44.82 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=26.3
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
||||+|||.||++||..|.+ .|.. -+|.++...
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~----~G~~-----~~V~vlEa~ 34 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHK----KGPD-----ADITLLEAS 34 (451)
T ss_pred eEEEECCCHHHHHHHHHHHH----hCCC-----CCEEEEEcC
Confidence 79999999999999998884 5632 267777764
No 138
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=72.36 E-value=6.6 Score=45.49 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=48.4
Q ss_pred cccccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhh
Q psy14377 4 SLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVH 75 (848)
Q Consensus 4 al~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~ 75 (848)
+++--|.+|+..||+|+|-|.+|.-.|+++.. +|. |=|.+-||+|.||.. ++ |+..+..
T Consensus 197 a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~----~GA------kvva~sds~g~i~~~--~G-ld~~~l~ 255 (411)
T COG0334 197 ALKALGDDLEGARVAVQGFGNVGQYAAEKLHE----LGA------KVVAVSDSKGGIYDE--DG-LDVEALL 255 (411)
T ss_pred HHHHcCCCcCCCEEEEECccHHHHHHHHHHHH----cCC------EEEEEEcCCCceecC--CC-CCHHHHH
Confidence 45566777999999999999999999998874 686 468888999999986 43 8866655
No 139
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=72.32 E-value=4.8 Score=43.01 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=34.7
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++|++-||+++|+|.-|..+++.|.. .|+ .+|.++|..=
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~----~Gv------g~i~lvD~D~ 66 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAA----AGV------GTLTLVDFDT 66 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHH----cCC------CEEEEEcCCE
Confidence 68999999999999999999999884 787 4999999863
No 140
>PRK09414 glutamate dehydrogenase; Provisional
Probab=72.30 E-value=9.8 Score=44.57 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEE-cCCCcccCCC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMV-DSKGLIVKDR 290 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~v-D~kGLi~~~r 290 (848)
..++..+++-.+.+|++.||+|+|-|..|...|++|.+. |. +|+-+ |++|-++...
T Consensus 216 ~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~----Ga-------kVVavsDs~G~iyn~~ 272 (445)
T PRK09414 216 VYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQL----GA-------KVVTCSDSSGYVYDEE 272 (445)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC----CC-------EEEEEEcCCceEECCC
Confidence 557788888889999999999999999999999998643 62 45555 9999998754
No 141
>PRK09126 hypothetical protein; Provisional
Probab=72.02 E-value=4.9 Score=44.27 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=29.0
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
.+.+|+|+|||.||+++|..|.+ .|+ ++.++|+.-.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~----~G~-------~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAG----SGL-------KVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHh----CCC-------cEEEEeCCCc
Confidence 35789999999999999998874 786 5788787543
No 142
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=71.97 E-value=3.4 Score=42.75 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=34.2
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
++|++.||+|+|+|.-|.-+++.|+.+ | .++|.++|.+-
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~----G------Vg~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS----G------IGSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc----C------CCEEEEEECCc
Confidence 568889999999999999999988766 9 57999999874
No 143
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=71.53 E-value=6.1 Score=43.83 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=31.9
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPE 66 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d 66 (848)
+|||+|+|.||+++|+-+.. .+-+ -.|.|++...-.+-.|+.
T Consensus 4 ~vvIiG~G~AG~~~a~~lr~----~~~~-----~~Itvi~~~~~~~y~~~~ 45 (377)
T PRK04965 4 GIVIIGSGFAARQLVKNIRK----QDAH-----IPITLITADSGDEYNKPD 45 (377)
T ss_pred CEEEECCcHHHHHHHHHHHh----hCcC-----CCEEEEeCCCCCCcCcCc
Confidence 79999999999999998763 4322 379999877655555664
No 144
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=71.42 E-value=3.7 Score=46.30 Aligned_cols=38 Identities=29% Similarity=0.339 Sum_probs=32.7
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
++|++.||+++|+|..|..++..|..+ | .++|.++|.+
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~----G------vg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA----G------VGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc----C------CCeEEEEeCC
Confidence 357888999999999999999988766 8 5789999975
No 145
>PRK06847 hypothetical protein; Provisional
Probab=71.29 E-value=5.4 Score=43.56 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=26.6
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..+|+|+|||.||+++|..|.. .|+ ++.++++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~----~g~-------~v~v~E~~ 36 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR----AGI-------AVDLVEID 36 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh----CCC-------CEEEEecC
Confidence 4579999999999999998874 676 46777664
No 146
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=71.00 E-value=9 Score=42.09 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 226 GLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 226 gll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
++..+++..+..+...|++|+|+|.+|..++..+... | . +++.+|++
T Consensus 138 av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~----G------a-~V~v~~r~ 184 (296)
T PRK08306 138 AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKAL----G------A-NVTVGARK 184 (296)
T ss_pred HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHC----C------C-EEEEEECC
Confidence 4556777778889999999999999999999887653 6 2 68887764
No 147
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=70.88 E-value=4.8 Score=44.66 Aligned_cols=120 Identities=17% Similarity=0.137 Sum_probs=76.8
Q ss_pred cccccCCCCCCceEEEecc-chhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccCCC
Q psy14377 4 SLRITKTRLSDNTILFQGA-GEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAP 82 (848)
Q Consensus 4 al~i~gK~i~d~kiV~~GA-GaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~~~ 82 (848)
+.+=.|.++++..+.++|| |..|.++||+|-- +-| .+.|+- +|.+..+|.- |+.-+++.-++.
T Consensus 157 ~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~---~~~--------~~~ll~-r~aea~~rq~--l~~l~e~~~~~~-- 220 (351)
T COG5322 157 HFAQLGIDLSQATVAIVGATGDIASAIARWLAP---KVG--------VKELLL-RDAEARNRQR--LTLLQEELGRGK-- 220 (351)
T ss_pred HHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc---ccC--------EEEEec-ccHHhhhhhh--hhhcccccCCCe--
Confidence 3445789999999999998 9999999999873 222 233322 2234445543 333333332221
Q ss_pred CCCHHHHhcccCCCchhhhhccCCccccccccCCcccc-ccccCCc-Ccc-CCcCccceeeec
Q psy14377 83 VKNLADVVKTVKPSILIEELKGLSQRDFLSSWLNRGPC-LNCWGKR-DFE-QDKQGISYSIHA 142 (848)
Q Consensus 83 ~~tL~ea~~~s~~~v~~g~vk~M~~~piifA~sn~~~~-i~atG~~-~fd-ypnQ~Nnv~vfp 142 (848)
..+++.+.-. .|+++ |+.+|.+.+.||.+-=+++| |+--|+| |.| |-.-.|-|+++|
T Consensus 221 i~s~d~~~~~--e~i~v-~vAs~~~g~~I~pq~lkpg~~ivD~g~P~dvd~~vk~~~~V~Ii~ 280 (351)
T COG5322 221 IMSLDYALPQ--EDILV-WVASMPKGVEIFPQHLKPGCLIVDGGYPKDVDTSVKNVGGVRIIP 280 (351)
T ss_pred eeeccccccc--cceEE-EEeecCCCceechhhccCCeEEEcCCcCcccccccccCCCeEEec
Confidence 2344544442 23333 99999999999988888888 6666777 333 555567799999
No 148
>PRK08163 salicylate hydroxylase; Provisional
Probab=70.86 E-value=5.5 Score=43.94 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=28.2
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
++.+|+|+|||-||+++|-.|.+ .|+ ++.++|+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~----~g~-------~v~v~Er~ 36 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALAR----QGI-------KVKLLEQA 36 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHh----CCC-------cEEEEeeC
Confidence 45789999999999999998874 776 57888874
No 149
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=70.78 E-value=5.6 Score=38.28 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=29.1
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
||+++|+|.-|..+|+.|+.. | .++|+++|.+-+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~----G------v~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS----G------VGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC----C------CCEEEEEcCCCc
Confidence 689999999999999988765 8 579999998644
No 150
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=70.76 E-value=4.4 Score=43.27 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=33.4
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
.+|++.+|+++|+|..|..+|+.|+.+ | ..+|.++|.+=
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~----G------Vg~i~LvD~D~ 45 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARS----G------VGKLTLIDFDV 45 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHc----C------CCEEEEECCCE
Confidence 357889999999999999999988765 8 57999999863
No 151
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=70.58 E-value=5.4 Score=44.46 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=26.6
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.|||+|||.||.++|..|. +.|+ +++++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La----~~G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLA----RAGI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHH----hCCC-------cEEEEECC
Confidence 5899999999999998877 3675 68999987
No 152
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=70.37 E-value=5.4 Score=44.32 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=28.3
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+.+|+|+|||.||+++|-.|.+ .|. ++.++|++-
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~----~G~-------~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD----SGL-------RIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc----CCC-------EEEEEecCC
Confidence 5789999999999999999874 785 578888754
No 153
>KOG0029|consensus
Probab=69.89 E-value=3.5 Score=48.66 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=21.8
Q ss_pred CCCceEEEeccchHHHHHHHHHHHH
Q psy14377 238 LSDNTILFQGAGEASLGIADLCVMA 262 (848)
Q Consensus 238 l~d~riv~~GAGaAg~gia~ll~~~ 262 (848)
.+..+|+|+|||.||+..|++|...
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~ 37 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDF 37 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHc
Confidence 3456899999999999999998876
No 154
>PRK07045 putative monooxygenase; Reviewed
Probab=69.55 E-value=6 Score=43.80 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=28.2
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
..+|+|+|||.||++||.+|.+ .|+ ++.++++.-
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~----~G~-------~v~v~E~~~ 38 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGA----RGH-------SVTVVERAA 38 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHh----cCC-------cEEEEeCCC
Confidence 4689999999999999998874 686 578888754
No 155
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=69.16 E-value=6 Score=42.47 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=29.6
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
..+..++|+|||.||++||..+. +.|+ ++.+++++..
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la----~~G~-------~V~vlEk~~~ 55 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLA----KNGL-------KVCVLERSLA 55 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHH----HCCC-------cEEEEecCCC
Confidence 34678999999999999999776 3674 6888887643
No 156
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=68.76 E-value=6 Score=44.67 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=27.4
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+|||+|||.||.+||..+. +.|+ ++.++|++-
T Consensus 1 ~~VvIVGaGPAG~~aA~~la----~~G~-------~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLA----SAGI-------QTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHH----hCCC-------cEEEEecCC
Confidence 37999999999999999877 4786 588888753
No 157
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=68.58 E-value=6.7 Score=44.08 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=29.9
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
.+.-|||+|||.||.+||..+.+ .|+ +++++|++.-+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~----~G~-------~VlvlEk~~~~ 38 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAK----AGL-------DVLVLEKGSEP 38 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHH----cCC-------eEEEEecCCCC
Confidence 35679999999999999999984 775 67888876554
No 158
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=68.33 E-value=5.4 Score=44.79 Aligned_cols=38 Identities=32% Similarity=0.492 Sum_probs=33.2
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+|++.||+|+|+|.-|..+|..|..+ | ..+|.++|.+
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a----G------vg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA----G------VGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc----C------CCeEEEEeCC
Confidence 468889999999999999999988765 8 5799999985
No 159
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=68.04 E-value=10 Score=45.00 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHh----------CCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 219 SCVNDVAGLLASLRIT----------KTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 219 A~V~~lAgll~Al~~t----------g~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+.=+|..|++.+++-. +..+++.+++|.|||.+|.+++..+.+ .| . +|+++|+
T Consensus 348 G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~----~G------~-~V~i~nR 410 (529)
T PLN02520 348 GYNTDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKE----KG------A-RVVIANR 410 (529)
T ss_pred EEcccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHH----CC------C-EEEEEcC
Confidence 4456788999998631 346888999999999888888776654 47 3 6888775
No 160
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=67.89 E-value=5.2 Score=48.75 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=35.1
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
.+|++.|++++|||.-|..+|+.|+.+ | .++|.++|.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~----G------Vg~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW----G------VRHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc----C------CCeEEEEcCCEE
Confidence 678899999999999999999988876 9 689999998543
No 161
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=67.75 E-value=5.5 Score=44.85 Aligned_cols=38 Identities=24% Similarity=0.217 Sum_probs=33.3
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
++|++.||+|+|+|..|..+|..|..+ | .++|.++|.+
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~----G------vg~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA----G------VGHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc----C------CCeEEEEeCC
Confidence 467889999999999999999987765 9 5799999986
No 162
>PLN02852 ferredoxin-NADP+ reductase
Probab=67.57 E-value=8.8 Score=45.34 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=30.4
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+.-...||+|+|||.||+.||..|.+. ..|. +|.|+|+.-
T Consensus 22 ~~~~~~~VaIVGaGPAGl~AA~~L~~~--~~g~-------~Vtv~E~~p 61 (491)
T PLN02852 22 STSEPLHVCVVGSGPAGFYTADKLLKA--HDGA-------RVDIIERLP 61 (491)
T ss_pred CCCCCCcEEEECccHHHHHHHHHHHhh--CCCC-------eEEEEecCC
Confidence 334456899999999999999988731 1353 799999864
No 163
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=67.55 E-value=7.4 Score=43.23 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=27.5
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..+|+|+|||.||+++|-.|. +.|. ++.++|+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~----~~G~-------~v~l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFA----KQGR-------SVAVIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHH----hCCC-------cEEEEcCC
Confidence 468999999999999998776 4786 67888864
No 164
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=67.46 E-value=5.5 Score=44.96 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=34.0
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+++++.||+++|+|..|-.+++.|. ..|+ .+|.++|..=
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La----~~Gv------g~i~lvD~d~ 169 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLA----AAGV------GTLGIVDHDV 169 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHH----HcCC------CeEEEEeCCE
Confidence 4789999999999999999999888 4887 4899999753
No 165
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=67.38 E-value=12 Score=42.93 Aligned_cols=48 Identities=27% Similarity=0.268 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.+++--+.+..+ ++++.+++|+|+|..|..++..+.. .| .++|+++|+
T Consensus 167 ~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~----~G------~~~V~v~~r 214 (423)
T PRK00045 167 SAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE----KG------VRKITVANR 214 (423)
T ss_pred HHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH----CC------CCeEEEEeC
Confidence 344433333333 5888999999999999999887764 36 457888765
No 166
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=67.07 E-value=8.8 Score=40.54 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=27.6
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.|||+|||-+|++||.-|.. .|. +|.++|+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~----~G~-------~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR----RGH-------SVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH----TTS-------EEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHH----CCC-------eEEEEeecc
Confidence 48999999999999998874 674 899999983
No 167
>PRK08223 hypothetical protein; Validated
Probab=67.07 E-value=5.8 Score=43.94 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=34.0
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
++|++.||+|+|+|..|.-+|..|..+ | ..+|.++|.+=
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~a----G------VG~i~lvD~D~ 61 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARL----G------IGKFTIADFDV 61 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHh----C------CCeEEEEeCCC
Confidence 468889999999999999999988876 9 57999999863
No 168
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=67.05 E-value=7.8 Score=43.38 Aligned_cols=40 Identities=30% Similarity=0.435 Sum_probs=29.5
Q ss_pred EEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc--ccCCC
Q psy14377 17 ILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI--VKDRP 65 (848)
Q Consensus 17 iV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi--~~~R~ 65 (848)
|||+|||.||.++|.-+..+ ..| .+|.++|++--+ ..+|+
T Consensus 2 viIvGaGpAGlslA~~l~~~--~~g-------~~Vllid~~~~~~~~~~~t 43 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA--RPG-------LSVLLIDPKPKPPWPNDRT 43 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc--CCC-------CEEEEEcCCccccccCCcc
Confidence 68999999999999987431 234 489999987655 44443
No 169
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=66.88 E-value=7.1 Score=39.58 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=28.0
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
|++++|+|..|..||+.|... | .++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~----G------vg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS----G------VGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc----C------CCeEEEEeCC
Confidence 689999999999999988765 8 5789999985
No 170
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=66.83 E-value=6.1 Score=42.53 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=26.2
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
.+.-++|+|||.||++||..|.+ .|+ ++.+++++=-+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~----~g~-------kV~v~E~~~~~ 52 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAK----AGL-------KVAVIERKLSP 52 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHH----HTS--------EEEEESSSS-
T ss_pred ccCCEEEECCChhHHHHHHHHHH----CCC-------eEEEEecCCCC
Confidence 35678999999999999997774 575 68888876443
No 171
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=66.70 E-value=6.4 Score=44.75 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=34.0
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
++|++.||+|+|+|..|..++..|..+ | .++|.++|.+=
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~----G------vg~i~ivD~D~ 75 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA----G------VGTITLIDDDT 75 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc----C------CCEEEEEeCCE
Confidence 578889999999999999999988776 8 57999999863
No 172
>PRK06753 hypothetical protein; Provisional
Probab=66.53 E-value=7.6 Score=42.47 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=25.7
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.||+|+|||.||+++|..|.+ .|. ++.+++++
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~----~g~-------~v~v~E~~ 32 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQE----QGH-------EVKVFEKN 32 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHh----CCC-------cEEEEecC
Confidence 379999999999999999874 686 45666654
No 173
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=66.37 E-value=7.1 Score=42.72 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=34.2
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
.+|++.+|+|+|+|..|..+|+.|+.+ | .++|.++|.+=+
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~----G------Vg~itLiD~D~V 65 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART----G------IGAITLIDMDDV 65 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc----C------CCEEEEEeCCEe
Confidence 468889999999999999999987765 8 578999998644
No 174
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=66.34 E-value=6.5 Score=38.93 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=20.7
Q ss_pred EEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 244 LFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 244 v~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+|+|||.||++.|-.|.+. |+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~----g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER----GI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT----T---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHhC----CC------CcEEEEeCC
Confidence 6899999999999877654 74 458888875
No 175
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=66.32 E-value=7.4 Score=42.72 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=27.2
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+|+|+|||.||+++|-.|.+ .|. ++.++|+.-
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~----~G~-------~v~v~E~~~ 38 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ----SGL-------RVALLAPRA 38 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh----CCC-------eEEEEecCC
Confidence 479999999999999988773 674 688888753
No 176
>PRK08013 oxidoreductase; Provisional
Probab=66.08 E-value=7.8 Score=43.36 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=28.3
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+.+|+|+|||.||+++|-.|. +.|+ ++.++|+.-
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La----~~G~-------~v~viE~~~ 36 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQ----GSGL-------RVAVLEQRV 36 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHh----hCCC-------EEEEEeCCC
Confidence 4568999999999999998776 4786 678888754
No 177
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=66.05 E-value=6.5 Score=45.23 Aligned_cols=31 Identities=19% Similarity=0.437 Sum_probs=21.7
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+|+|+||||||+.||-.+. +.|. ++.++++.
T Consensus 2 dviIIGgGaAGl~aA~~aa----~~g~-------~V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAA----EKGA-------RVLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHH----HTT---------EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHH----hCCC-------CEEEEeCC
Confidence 6899999999999999886 3674 67887775
No 178
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=66.00 E-value=7.8 Score=44.23 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=28.2
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+-.+||+|||.||+++|..+.. .| .++.++|++.
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~----~G-------~~V~liE~~~ 37 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQ----LG-------LKVAIVEKEK 37 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHH----CC-------CcEEEEeccc
Confidence 3579999999999999998874 67 4789999763
No 179
>PLN02268 probable polyamine oxidase
Probab=65.78 E-value=7.5 Score=43.79 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=25.1
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
||||+|||.||+++|+.|.+ .|. +|.++...
T Consensus 2 ~VvVIGaGisGL~aA~~L~~----~g~-------~v~vlEa~ 32 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD----ASF-------KVTLLESR 32 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh----CCC-------eEEEEeCC
Confidence 78999999999999998874 564 57776653
No 180
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=65.73 E-value=12 Score=43.86 Aligned_cols=80 Identities=18% Similarity=0.134 Sum_probs=59.2
Q ss_pred eeeecCCCcchHHHHHHHccc-Cc--eeccCCchHHHHHHHHHHHHHhhh--------CCcCCCceEEecCcchhhHHHH
Q psy14377 655 IQFEDFANHSAFRFLDTYRNR-YC--VFNDDIQGTASVAVAGLLASLRIT--------KTRLSDNTILFQGAGEGTASVA 723 (848)
Q Consensus 655 IqfEDf~~~naf~lL~ryr~~-~~--~FnDDiQGTaaV~LAgllaAlr~t--------~~~l~d~riv~~GAG~A~~g~g 723 (848)
|..|=+....-.++.++|.-. .| .+|++..+.+....+-+++.++-. ...-.+.+++|+|+|+| |+.
T Consensus 149 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~dVvIIGgGpA--Gl~ 226 (515)
T TIGR03140 149 ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPYDVLVVGGGPA--GAA 226 (515)
T ss_pred ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCCCEEEECCCHH--HHH
Confidence 444446667778888999776 33 347777788888888887777643 12244678999999999 999
Q ss_pred HHHHHHHhccccc
Q psy14377 724 VAGLLASLRITKT 736 (848)
Q Consensus 724 iA~ll~~~~~~~~ 736 (848)
.|..+...+.+-.
T Consensus 227 AA~~la~~G~~v~ 239 (515)
T TIGR03140 227 AAIYAARKGLRTA 239 (515)
T ss_pred HHHHHHHCCCcEE
Confidence 9999999875443
No 181
>PRK14694 putative mercuric reductase; Provisional
Probab=65.62 E-value=8.4 Score=44.30 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=30.0
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
|+-.+..+||+|||.||+++|.-+.. .| .++.++|+.
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~----~g-------~~v~lie~~ 38 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATE----RG-------ARVTLIERG 38 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHh----CC-------CcEEEEEcc
Confidence 34456789999999999999998874 67 478999974
No 182
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=65.54 E-value=7.1 Score=43.96 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=34.8
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+++++.||+++|+|..|-.+++.|. ..|+ .+|.++|..=+
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La----~~Gv------g~i~lvD~D~v 63 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLA----GAGV------GHITIIDDDTV 63 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHH----HcCC------CeEEEEeCCEE
Confidence 5789999999999999999999887 4887 48999998743
No 183
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=65.50 E-value=8.7 Score=43.74 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=27.7
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
.+..|||+|||.||+++|..+.. .| .++.++|+
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~----~g-------~~v~lie~ 34 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAK----LG-------KKVALIEK 34 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHH----CC-------CeEEEEeC
Confidence 44679999999999999998773 66 47899997
No 184
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=65.38 E-value=18 Score=42.24 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=38.1
Q ss_pred EchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 216 IGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 216 hGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+||+-.+ +-++. +.++..+.+.+++|+|+|..|.++|..+... |. +++++|.
T Consensus 192 ~gt~~s~-~~ai~---rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~----Ga-------~ViV~d~ 243 (425)
T PRK05476 192 YGTGESL-LDGIK---RATNVLIAGKVVVVAGYGDVGKGCAQRLRGL----GA-------RVIVTEV 243 (425)
T ss_pred HHHHhhh-HHHHH---HhccCCCCCCEEEEECCCHHHHHHHHHHHhC----CC-------EEEEEcC
Confidence 4665444 44554 3357778999999999999999999987654 62 5787775
No 185
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=65.34 E-value=6.9 Score=41.77 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=34.3
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++|++.||+++|+|..|-.+++.|.. .|+ .+|.++|..=+
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar----~GV------g~i~LvD~D~V 46 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALAR----SGV------GKLTLIDFDVV 46 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHH----cCC------CEEEEECCCEE
Confidence 46889999999999999999998874 787 49999998644
No 186
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=65.29 E-value=8.1 Score=42.84 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=28.5
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+..+|+|+|||.||+++|-.|. +.|+ ++.++|+.-
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La----~~G~-------~v~liE~~~ 39 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALA----DAGL-------SVALVEGRE 39 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHh----cCCC-------EEEEEeCCC
Confidence 3467999999999999998876 4675 688989864
No 187
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=65.26 E-value=20 Score=42.43 Aligned_cols=94 Identities=15% Similarity=0.189 Sum_probs=60.7
Q ss_pred CceeccCCchHHHHH-------HHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCC
Q psy14377 676 YCVFNDDIQGTASVA-------VAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQG 747 (848)
Q Consensus 676 ~~~FnDDiQGTaaV~-------LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~ 747 (848)
+|++|-+---|-++. ++.+=..+|.++..|.+.+++|+|.|.- |.++|+.+...++ ++.+++ ...
T Consensus 216 iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~I--Gr~vA~rL~a~Ga-~ViV~e~dp~---- 288 (476)
T PTZ00075 216 FPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDV--GKGCAQALRGFGA-RVVVTEIDPI---- 288 (476)
T ss_pred ceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHH--HHHHHHHHHHCCC-EEEEEeCCch----
Confidence 788875554444332 4444555677889999999999999999 9999999988775 455443 221
Q ss_pred CCCCchHHHhhhccccchhhccccCCCceEEeec
Q psy14377 748 AGEGTASVAIAGLLASLRITKTRLSDNTILFQGS 781 (848)
Q Consensus 748 r~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s 781 (848)
+ -......|.. ...+++++..+||++...
T Consensus 289 ~---a~~A~~~G~~--~~~leell~~ADIVI~at 317 (476)
T PTZ00075 289 C---ALQAAMEGYQ--VVTLEDVVETADIFVTAT 317 (476)
T ss_pred h---HHHHHhcCce--eccHHHHHhcCCEEEECC
Confidence 0 0000112321 124667788899998653
No 188
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=64.85 E-value=16 Score=37.23 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=32.2
Q ss_pred HHHHhCCcCCCceEEEeccch-HHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 230 SLRITKTRLSDNTILFQGAGE-ASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 230 Al~~tg~~l~d~riv~~GAGa-Ag~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.++-...+|++.+++|+|+|. .|..+|+.|.. .| . +++++++
T Consensus 34 l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~----~g------~-~V~v~~r 76 (168)
T cd01080 34 LLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN----RN------A-TVTVCHS 76 (168)
T ss_pred HHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh----CC------C-EEEEEEC
Confidence 444455789999999999998 59989888765 35 2 5888775
No 189
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=64.21 E-value=8.4 Score=42.50 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=25.5
Q ss_pred EEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 17 ILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 17 iV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
|+|+|||.||+++|..+. +.|. ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la----~~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELA----RPGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHH----hCCC-------eEEEEccCC
Confidence 799999999999998765 3574 789999754
No 190
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=64.15 E-value=8.8 Score=43.80 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=28.1
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+-.|+|+|||.||.+||-.+. +.|+ +++++|+.-
T Consensus 5 ~~DViIVGaGpAG~~aA~~La----~~G~-------~V~llEr~~ 38 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLA----REGA-------QVLVIERGN 38 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHH----hCCC-------eEEEEEcCC
Confidence 468999999999999998886 4785 688888753
No 191
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=64.11 E-value=9.5 Score=42.13 Aligned_cols=56 Identities=25% Similarity=0.318 Sum_probs=42.9
Q ss_pred cCceeccCCchHHHHHHHHHHHHHhhhC--CcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 675 RYCVFNDDIQGTASVAVAGLLASLRITK--TRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 675 ~~~~FnDDiQGTaaV~LAgllaAlr~t~--~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
++..+|-|-. |++.+|+-.+ ...+.+++|++|||-| +-+|+-.|.+.+++++.+.+
T Consensus 100 ~l~G~NTD~~--------G~~~~L~~~~~~~~~~~~~vlilGAGGA--arAv~~aL~~~g~~~i~V~N 157 (283)
T COG0169 100 KLRGYNTDGI--------GFLRALKEFGLPVDVTGKRVLILGAGGA--ARAVAFALAEAGAKRITVVN 157 (283)
T ss_pred EEEEEcCCHH--------HHHHHHHhcCCCcccCCCEEEEECCcHH--HHHHHHHHHHcCCCEEEEEe
Confidence 3455666643 4666777655 4567899999999999 99999999999988776554
No 192
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=63.95 E-value=8.5 Score=43.22 Aligned_cols=40 Identities=28% Similarity=0.446 Sum_probs=34.7
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++|++.||+++|||.-|-.+|+.|.. .|+ .+|.++|..-+
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~----aGv------g~i~lvD~D~V 59 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVR----AGV------GKVTIVDRDYV 59 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHH----cCC------CeEEEEeCCcc
Confidence 57899999999999999999998884 787 48999999543
No 193
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=63.68 E-value=9.6 Score=39.48 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=26.2
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.|+|+|||.||+++|..|. +.|+ ++.++|+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~----~~g~-------~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLA----DKGL-------RVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHH----HCCC-------eEEEEeccC
Confidence 4899999999999998876 3675 688888754
No 194
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=63.68 E-value=9.7 Score=44.55 Aligned_cols=84 Identities=15% Similarity=0.120 Sum_probs=62.5
Q ss_pred eeeecCCCcchHHHHHHHccc-Cc--eeccCCchHHHHHHHHHHHHHhhhC--------CcCCCceEEecCcchhhHHHH
Q psy14377 655 IQFEDFANHSAFRFLDTYRNR-YC--VFNDDIQGTASVAVAGLLASLRITK--------TRLSDNTILFQGAGEGTASVA 723 (848)
Q Consensus 655 IqfEDf~~~naf~lL~ryr~~-~~--~FnDDiQGTaaV~LAgllaAlr~t~--------~~l~d~riv~~GAG~A~~g~g 723 (848)
|.+|=+....-.++.++|.-. .| ++||+....|....+-++..++-.. ....+..+||+|||+| |+.
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpa--Gl~ 225 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPA--GAA 225 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHH--HHH
Confidence 556666667778899999776 33 3577777888888888888876431 2244568999999999 999
Q ss_pred HHHHHHHhccccccccc
Q psy14377 724 VAGLLASLRITKTRLSD 740 (848)
Q Consensus 724 iA~ll~~~~~~~~~~~d 740 (848)
.|..+...+.+-..+.+
T Consensus 226 aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 226 AAIYAARKGIRTGIVAE 242 (517)
T ss_pred HHHHHHHCCCcEEEEec
Confidence 99999998765444433
No 195
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=63.46 E-value=9.3 Score=45.43 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=29.9
Q ss_pred CCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q psy14377 235 KTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR 290 (848)
Q Consensus 235 g~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r 290 (848)
...++++|+||+|.|..|.=||..|... .+++|+.=+.|--.-.|
T Consensus 178 ~~~f~gKrVlVVG~g~Sg~DIa~el~~~-----------a~~v~~s~R~~~wv~pr 222 (531)
T PF00743_consen 178 PEPFKGKRVLVVGGGNSGADIAVELSRV-----------AKKVYLSTRRGAWVLPR 222 (531)
T ss_dssp GGGGTTSEEEEESSSHHHHHHHHHHTTT-----------SCCEEEECC--------
T ss_pred hhhcCCCEEEEEeCCHhHHHHHHHHHHh-----------cCCeEEEEecccccccc
Confidence 4678999999999999999999876542 35677777777665555
No 196
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=63.37 E-value=9.6 Score=43.30 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=28.3
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+...+||+|||.||+++|.-+.+ .| .++.++|++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~----~g-------~~V~lie~~ 35 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAK----AG-------WRVALIEQS 35 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHH----CC-------CeEEEEcCC
Confidence 34679999999999999998874 66 479999975
No 197
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=63.24 E-value=7.7 Score=42.85 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=35.1
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+||.+.||+++|+|..|..||+-|.. .|+ ++|.++|.+=+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLal----aGV------g~itI~D~d~v 54 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLIL----AGV------KSVTLHDTKPC 54 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHH----cCC------CeEEEEcCCcc
Confidence 57899999999999999999998884 787 59999998744
No 198
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=63.21 E-value=6.9 Score=44.62 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=33.2
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
++|++.||+|+|+|.-|..+|..|+.+ | .++|.++|.+
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~----G------vg~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA----G------VGTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc----C------CCeEEEECCC
Confidence 567889999999999999999988776 8 5789999975
No 199
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=63.15 E-value=16 Score=42.28 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=29.8
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.++++.+++|+|||.+|..++..+.. .| .++|+++++
T Consensus 177 ~~l~~kkvlviGaG~~a~~va~~L~~----~g------~~~I~V~nR 213 (414)
T PRK13940 177 DNISSKNVLIIGAGQTGELLFRHVTA----LA------PKQIMLANR 213 (414)
T ss_pred cCccCCEEEEEcCcHHHHHHHHHHHH----cC------CCEEEEECC
Confidence 35888999999999999988887754 47 457888766
No 200
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=63.09 E-value=12 Score=36.04 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=29.5
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
||+++|+|+-|-.+++.|.. .|+ ++|.++|..-+
T Consensus 1 ~VliiG~GglGs~ia~~L~~----~Gv------~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR----SGV------GKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH----CCC------CEEEEEcCCCc
Confidence 68999999999999998884 787 48999998655
No 201
>PRK10015 oxidoreductase; Provisional
Probab=62.69 E-value=9.6 Score=43.64 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=28.0
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+..++|+|||.||.+||..+. +.|+ +++++|+.-
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA----~~G~-------~VlliEr~~ 38 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMA----RAGL-------DVLVIERGD 38 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHH----hCCC-------eEEEEecCC
Confidence 467999999999999998876 4675 688888754
No 202
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=62.68 E-value=11 Score=45.42 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=28.6
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..-||+|+|||.||+++|..|.. .|. ++.++|+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~----~G~-------~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR----NGV-------AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH----CCC-------eEEEEecC
Confidence 46699999999999999998874 674 68888874
No 203
>PRK07411 hypothetical protein; Validated
Probab=62.66 E-value=7 Score=44.59 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=33.6
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+|++.||+|+|+|.-|.-+|..|+.+ | .++|.++|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~----G------vg~l~lvD~D 71 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA----G------IGRIGIVDFD 71 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc----C------CCEEEEECCC
Confidence 567889999999999999999988876 9 6799999985
No 204
>PLN02494 adenosylhomocysteinase
Probab=62.61 E-value=20 Score=42.40 Aligned_cols=53 Identities=23% Similarity=0.339 Sum_probs=42.0
Q ss_pred EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.+||.-.+ +-|++ |.|+..+...+++|+|.|..|.++|..+... |. +++.+|.
T Consensus 233 ~yGtgqS~-~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka~----Ga-------~VIV~e~ 285 (477)
T PLN02494 233 LYGCRHSL-PDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKAA----GA-------RVIVTEI 285 (477)
T ss_pred cccccccH-HHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHHC----CC-------EEEEEeC
Confidence 66876666 66887 4588889999999999999999999987643 63 4777665
No 205
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=62.61 E-value=10 Score=41.58 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=35.2
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
.++++.+|+++|+|..|-.+|+.|. ..|+ .+|.++|.+=+-
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~La----r~GV------g~itLiD~D~V~ 66 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALA----RTGI------GAITLIDMDDVC 66 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHH----HcCC------CEEEEEeCCEec
Confidence 3689999999999999999999888 4787 489999986553
No 206
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=62.60 E-value=9.6 Score=43.73 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=27.2
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+|+||+|+|+||+++|.-+.+ .| +++.|+|+.
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~----~g-------~~V~lie~~ 32 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQ----NG-------KNVTLIDEA 32 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHh----CC-------CcEEEEECC
Confidence 389999999999999998774 67 479999974
No 207
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=62.53 E-value=9.2 Score=41.62 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=26.2
Q ss_pred EEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 17 ILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 17 iV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
|+|+|||.||+++|..|.. .|+ ++.++|+.--
T Consensus 2 ViIvGaG~aGl~~A~~L~~----~G~-------~v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR----SGL-------KIALIEATPA 33 (385)
T ss_pred EEEECCCHHHHHHHHHHhc----CCC-------EEEEEeCCCc
Confidence 7899999999999988773 675 6788887644
No 208
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=62.37 E-value=9.6 Score=42.09 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=28.4
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++.+|+|+|||.||+++|-.|. +.|. ++.++|+.-
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La----~~G~-------~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLA----QHGF-------SVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHh----cCCC-------EEEEEcCCC
Confidence 4568999999999999998776 3675 688999753
No 209
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=62.35 E-value=15 Score=42.19 Aligned_cols=95 Identities=22% Similarity=0.245 Sum_probs=60.3
Q ss_pred chHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhc-cc
Q psy14377 684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGL-LA 762 (848)
Q Consensus 684 QGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~-~~ 762 (848)
.+.-+++.+++--|.+..+. +.+.+++|+|+|.. |..+++.+...++.++.+.+... .+.+.+ .+..|- ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~~-l~~~~VlViGaG~i--G~~~a~~L~~~G~~~V~v~~rs~---~ra~~l--a~~~g~~~i 229 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFGS-LKGKKALLIGAGEM--GELVAKHLLRKGVGKILIANRTY---ERAEDL--AKELGGEAV 229 (417)
T ss_pred CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECChHH--HHHHHHHHHHCCCCEEEEEeCCH---HHHHHH--HHHcCCeEe
Confidence 55556777777666666553 88999999999999 99999999887766665554110 000001 111111 11
Q ss_pred cchhhccccCCCceEEeecCCCcc
Q psy14377 763 SLRITKTRLSDNTILFQGSGEGTA 786 (848)
Q Consensus 763 ~~r~~~~~~~~~~~~~~~s~~~~~ 786 (848)
+.-.+.+.+.++|+.|...+....
T Consensus 230 ~~~~l~~~l~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 230 KFEDLEEYLAEADIVISSTGAPHP 253 (417)
T ss_pred eHHHHHHHHhhCCEEEECCCCCCc
Confidence 112456778899999998765544
No 210
>PRK07588 hypothetical protein; Provisional
Probab=61.95 E-value=10 Score=42.07 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=26.4
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.+|+|+|||.||+++|-.|.+ .|. ++.++++.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~----~G~-------~v~v~E~~ 32 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR----YGH-------EPTLIERA 32 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH----CCC-------ceEEEeCC
Confidence 379999999999999998874 686 57787764
No 211
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=61.44 E-value=12 Score=37.29 Aligned_cols=35 Identities=20% Similarity=0.405 Sum_probs=26.6
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
.+...||||.|+|.+|.++++++. .+|+ ++...|.
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~----~lGa-------~v~~~d~ 51 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAK----GLGA-------EVVVPDE 51 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHH----HTT--------EEEEEES
T ss_pred CCCCeEEEEECCCHHHHHHHHHHh----HCCC-------EEEeccC
Confidence 366789999999999999999998 4886 4556665
No 212
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=61.28 E-value=21 Score=38.05 Aligned_cols=48 Identities=19% Similarity=0.370 Sum_probs=37.6
Q ss_pred CHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHhccC--CCcEEEEeCCCCCC
Q psy14377 441 TADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNT--DGRGVFASGSPFDP 492 (848)
Q Consensus 441 Teevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~~~T--~G~ai~AtGsPf~p 492 (848)
-+++.+.|.+++++.+++-.|||. .....-+++++ ..+-+|++|. .++
T Consensus 99 ~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~-ld~ 148 (263)
T cd00650 99 VKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT-LDP 148 (263)
T ss_pred HHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec-chH
Confidence 578889999999999999999995 66666777773 4456888885 444
No 213
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=61.28 E-value=15 Score=31.91 Aligned_cols=35 Identities=11% Similarity=0.338 Sum_probs=28.5
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccc
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIV 287 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~ 287 (848)
|++|+|+|..|+-+|..+... | .++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh----C-------cEEEEEeccchhh
Confidence 689999999999999987553 5 5788888876555
No 214
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=61.18 E-value=11 Score=42.05 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=28.2
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
+|||+|||.+|.+||.-|.+ .| .+|+++|+...+
T Consensus 3 ~vvIIGaG~~G~~~A~~La~----~g-------~~V~vle~~~~~ 36 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQ----RG-------YQVTVFDRHRYA 36 (410)
T ss_pred EEEEECCCHHHHHHHHHHHH----CC-------CeEEEEeCCCCC
Confidence 89999999999999987774 56 479999986544
No 215
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.70 E-value=17 Score=40.62 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhhCCcCCCceEEecCcc-hhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchhh
Q psy14377 689 VAVAGLLASLRITKTRLSDNTILFQGAG-EGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRIT 767 (848)
Q Consensus 689 V~LAgllaAlr~t~~~l~d~riv~~GAG-~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~~ 767 (848)
+|-.|++.=++-.+.+++.++++|+|.| .- |-.+|.+|...+. .+.+|+. +++ .+
T Consensus 141 cTp~aii~lL~~~~i~l~Gk~V~vIG~s~iv--G~PmA~~L~~~ga-tVtv~~~------~t~---------------~l 196 (301)
T PRK14194 141 CTPSGCLRLLEDTCGDLTGKHAVVIGRSNIV--GKPMAALLLQAHC-SVTVVHS------RST---------------DA 196 (301)
T ss_pred CcHHHHHHHHHHhCCCCCCCEEEEECCCCcc--HHHHHHHHHHCCC-EEEEECC------CCC---------------CH
Confidence 4667777788888999999999999996 88 9999999998764 4444431 111 46
Q ss_pred ccccCCCceEEeecCCCc
Q psy14377 768 KTRLSDNTILFQGSGEGT 785 (848)
Q Consensus 768 ~~~~~~~~~~~~~s~~~~ 785 (848)
++....|||.|..-++..
T Consensus 197 ~e~~~~ADIVIsavg~~~ 214 (301)
T PRK14194 197 KALCRQADIVVAAVGRPR 214 (301)
T ss_pred HHHHhcCCEEEEecCChh
Confidence 777788999998776654
No 216
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=60.48 E-value=12 Score=41.86 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=28.6
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+..+|||+|+|.||+..|..|.+. |. .-+|.++|+.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh----CC-----CCCEEEeCCC
Confidence 457899999999999999988764 52 2478888764
No 217
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=60.45 E-value=12 Score=37.85 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=29.0
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
||+++|+|..|-.+++.|.. .|+ .+|.++|.+=+
T Consensus 1 ~VlViG~GglGs~ia~~La~----~Gv------g~i~lvD~D~v 34 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR----SGV------GNLKLVDFDVV 34 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH----cCC------CeEEEEeCCEE
Confidence 68999999999999998884 787 48999998643
No 218
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=60.14 E-value=13 Score=36.67 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=26.8
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
||.|+|||+.|.|+|.++.. .| .++.|.+++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~----~g-------~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD----NG-------HEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH----CT-------EEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHH----cC-------CEEEEEeccH
Confidence 79999999999999999884 56 3788877764
No 219
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=60.14 E-value=11 Score=42.94 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=35.5
Q ss_pred CCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 9 KTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 9 gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
-+++++.||+++|+|..|..+++.|.. .|+ .+|.++|..=+
T Consensus 36 q~~l~~~~VliiG~GglG~~v~~~La~----~Gv------g~i~ivD~D~v 76 (370)
T PRK05600 36 QERLHNARVLVIGAGGLGCPAMQSLAS----AGV------GTITLIDDDTV 76 (370)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHH----cCC------CEEEEEeCCEE
Confidence 367899999999999999999998884 787 48999998755
No 220
>PRK06185 hypothetical protein; Provisional
Probab=59.98 E-value=11 Score=41.79 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=28.9
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++..|+|+|||.+|+++|-.|. +.|+ ++.++|++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La----~~G~-------~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLA----RAGV-------DVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHH----hCCC-------cEEEEecCC
Confidence 4578999999999999998776 3675 688889864
No 221
>KOG1495|consensus
Probab=59.98 E-value=10 Score=42.11 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=31.6
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
+..+..||.++|+|.-|+|||-.++. .|+. +++.++|-
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~----k~La-----del~lvDv 53 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILL----KGLA-----DELVLVDV 53 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHH----hhhh-----hceEEEec
Confidence 34568899999999999999998774 6776 68899885
No 222
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=59.89 E-value=14 Score=38.46 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=48.0
Q ss_pred cCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhh-ccccchhhc-cccCCCceEEeec
Q psy14377 704 RLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAG-LLASLRITK-TRLSDNTILFQGS 781 (848)
Q Consensus 704 ~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~-~~~~~r~~~-~~~~~~~~~~~~s 781 (848)
+|++.++||+|+|.. |.-.++.|++.+. ++.+.+. ...+........+ +.-..|.+. .-++++|++|...
T Consensus 7 ~l~~k~vLVIGgG~v--a~~ka~~Ll~~ga-~V~VIs~-----~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT 78 (202)
T PRK06718 7 DLSNKRVVIVGGGKV--AGRRAITLLKYGA-HIVVISP-----ELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAAT 78 (202)
T ss_pred EcCCCEEEEECCCHH--HHHHHHHHHHCCC-eEEEEcC-----CCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcC
Confidence 578899999999999 9999999999873 4443321 1111111222222 222334333 3477888888776
Q ss_pred CCCcchhhhh
Q psy14377 782 GEGTASVAVA 791 (848)
Q Consensus 782 ~~~~~~~~~~ 791 (848)
......-.++
T Consensus 79 ~d~elN~~i~ 88 (202)
T PRK06718 79 NDPRVNEQVK 88 (202)
T ss_pred CCHHHHHHHH
Confidence 6665554443
No 223
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=59.85 E-value=9.3 Score=43.59 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=34.5
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+++.+.||+++|+|.-|..+|+.|.. .|+ .+|.++|..=+
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~----~Gv------g~i~lvD~D~v 77 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAA----AGV------GTLGIVEFDVV 77 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHH----cCC------CeEEEECCCEe
Confidence 57899999999999999999998884 787 48999997533
No 224
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=59.77 E-value=13 Score=43.04 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=28.7
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
..-||||+|||.||+++|..+.. .|. ++.|+|+..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~----~G~-------~V~vie~~~ 176 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR----AGH-------KVTVFERAD 176 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh----CCC-------cEEEEecCC
Confidence 34689999999999999998873 674 689998753
No 225
>PRK10262 thioredoxin reductase; Provisional
Probab=59.60 E-value=11 Score=40.69 Aligned_cols=34 Identities=9% Similarity=0.234 Sum_probs=26.5
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
..++++|+|+|..|+-+|..+... | ++++++++.
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~----~-------~~Vtlv~~~ 178 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNI----A-------SEVHLIHRR 178 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhh----C-------CEEEEEEEC
Confidence 468999999999999999887653 4 567776653
No 226
>PRK06153 hypothetical protein; Provisional
Probab=59.53 E-value=7.1 Score=45.03 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=34.2
Q ss_pred CCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 235 KTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 235 g~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
-.+|++.||+|+|+|..|.-++++|... | .++|.++|.+
T Consensus 171 q~kL~~~~VaIVG~GG~GS~Va~~LAR~----G------VgeI~LVD~D 209 (393)
T PRK06153 171 SAKLEGQRIAIIGLGGTGSYILDLVAKT----P------VREIHLFDGD 209 (393)
T ss_pred HHHHhhCcEEEEcCCccHHHHHHHHHHc----C------CCEEEEECCC
Confidence 3578889999999999999999998876 8 5799999985
No 227
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=59.27 E-value=12 Score=41.70 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=27.6
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
...+|+|+|||.+|+++|-.|. +.|+ ++.++|+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~----~~G~-------~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALK----ESDL-------RIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHH----hCCC-------EEEEEcCC
Confidence 3568999999999999998776 4686 57888874
No 228
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=59.23 E-value=18 Score=35.40 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=28.9
Q ss_pred ceEEEecc-chhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGA-GEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GA-GaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.||.++|| |.-|-++|-+|++ .|+- ++|.++|.+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~----~~l~-----~ei~L~D~~ 35 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQ----QGLA-----DEIVLIDIN 35 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHH----TTTS-----SEEEEEESS
T ss_pred CEEEEECCCChHHHHHHHHHHh----CCCC-----CceEEeccC
Confidence 59999999 9999999999985 4654 579999985
No 229
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=59.20 E-value=15 Score=40.51 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=28.9
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
.+..+|+|+|||.+|+++|-.|. +.|. ++.++|+.-.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~----~~G~-------~v~liE~~~~ 41 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALA----RAGA-------SVALVAPEPP 41 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHh----cCCC-------eEEEEeCCCC
Confidence 34567999999999999998776 3675 6888888643
No 230
>PLN00203 glutamyl-tRNA reductase
Probab=59.18 E-value=13 Score=44.20 Aligned_cols=111 Identities=18% Similarity=0.159 Sum_probs=65.9
Q ss_pred chHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCC-cCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCc
Q psy14377 664 SAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKT-RLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNT 742 (848)
Q Consensus 664 naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~-~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g 742 (848)
.||+.=+|-|...-. -.|--+|+-+++=-|.+..+. +|.+.+++|+|||.. |-.+++.|...+.+++.+.+
T Consensus 226 ~Ai~~~KrVRteT~I----~~~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~m--G~~~a~~L~~~G~~~V~V~n-- 297 (519)
T PLN00203 226 HAITAGKRVRTETNI----ASGAVSVSSAAVELALMKLPESSHASARVLVIGAGKM--GKLLVKHLVSKGCTKMVVVN-- 297 (519)
T ss_pred HHHHHHHHHhhccCC----CCCCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHH--HHHHHHHHHhCCCCeEEEEe--
Confidence 555555666654221 023334555555556666654 699999999999999 99999999877765554443
Q ss_pred eecCCCCC-CchHHH-hh-hc---cccchhhccccCCCceEEeecCCCcch
Q psy14377 743 ILFQGAGE-GTASVA-IA-GL---LASLRITKTRLSDNTILFQGSGEGTAS 787 (848)
Q Consensus 743 ~i~~~r~~-~~~~~~-~~-~~---~~~~r~~~~~~~~~~~~~~~s~~~~~~ 787 (848)
|.. ...... .. +. ......+.+.+.++||.|...+.+..-
T Consensus 298 -----Rs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pv 343 (519)
T PLN00203 298 -----RSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETPL 343 (519)
T ss_pred -----CCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCCe
Confidence 221 111111 11 11 112233456788999999887666553
No 231
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=59.15 E-value=14 Score=42.58 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=29.1
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
-..-||+|+|+|.||+++|..|.. .|. ++.++|+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~----~G~-------~V~vie~~ 165 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAK----AGH-------SVTVFEAL 165 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH----CCC-------cEEEEecC
Confidence 456799999999999999998874 674 68899874
No 232
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=58.98 E-value=16 Score=41.93 Aligned_cols=94 Identities=26% Similarity=0.250 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchH-HHhhhc-ccc
Q psy14377 686 TASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTAS-VAIAGL-LAS 763 (848)
Q Consensus 686 TaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~-~~~~~~-~~~ 763 (848)
..+++.+++--|.+..+ ++.+.+++|+|+|.. |..++..+...+++++.+.+.- ++.-.. .+..|. ..+
T Consensus 162 ~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~i--G~~~a~~L~~~G~~~V~v~~r~------~~ra~~la~~~g~~~~~ 232 (423)
T PRK00045 162 AVSVASAAVELAKQIFG-DLSGKKVLVIGAGEM--GELVAKHLAEKGVRKITVANRT------LERAEELAEEFGGEAIP 232 (423)
T ss_pred CcCHHHHHHHHHHHhhC-CccCCEEEEECchHH--HHHHHHHHHHCCCCeEEEEeCC------HHHHHHHHHHcCCcEee
Confidence 44666666544444434 588899999999999 9999999988776665544411 011011 111111 111
Q ss_pred chhhccccCCCceEEeecCCCcchh
Q psy14377 764 LRITKTRLSDNTILFQGSGEGTASV 788 (848)
Q Consensus 764 ~r~~~~~~~~~~~~~~~s~~~~~~~ 788 (848)
.-.+.+.+.++|+.|..++....-+
T Consensus 233 ~~~~~~~l~~aDvVI~aT~s~~~~i 257 (423)
T PRK00045 233 LDELPEALAEADIVISSTGAPHPII 257 (423)
T ss_pred HHHHHHHhccCCEEEECCCCCCcEE
Confidence 1234566789999998876655443
No 233
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=58.93 E-value=20 Score=40.71 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=30.7
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+|++.+++++|||..|--+|+.|.+ .| .++|+++.+.
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~----~g------~~~i~v~nRt 207 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQR----QG------YSRITFCSRQ 207 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHH----cC------CCEEEEEcCC
Confidence 56999999999999998888777665 47 4579987774
No 234
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=58.77 E-value=12 Score=43.98 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=27.0
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
-++.++||+|||.||+++|.-+. +.|. ++.++|+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la----~~G~-------~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAA----RKGL-------RTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHH----HCCC-------cEEEEec
Confidence 44678999999999999999777 4775 5666664
No 235
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=58.52 E-value=10 Score=43.01 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=46.9
Q ss_pred cchHHHHHHHcccCceeccCCchHHHHHHH--HHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 663 HSAFRFLDTYRNRYCVFNDDIQGTASVAVA--GLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 663 ~naf~lL~ryr~~~~~FnDDiQGTaaV~LA--gllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
..||+.=+|-|...-. |+++|.++ ++..+ +.. .+|++.+++++|||.. |--+|+.|.+.+++++.+++
T Consensus 136 ~~A~~~aKrVRteT~I------~~~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem--~~l~a~~L~~~g~~~i~v~n 205 (338)
T PRK00676 136 QKALKEGKVFRSKGGA------PYAEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEI--NRKVAYYLQRQGYSRITFCS 205 (338)
T ss_pred HHHHHHHHHHhhhcCC------CCCCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHH--HHHHHHHHHHcCCCEEEEEc
Confidence 3566666676664221 22333333 33333 333 5699999999999999 99999999998888877777
Q ss_pred C
Q psy14377 741 N 741 (848)
Q Consensus 741 ~ 741 (848)
.
T Consensus 206 R 206 (338)
T PRK00676 206 R 206 (338)
T ss_pred C
Confidence 3
No 236
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=58.37 E-value=23 Score=41.02 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=39.8
Q ss_pred EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
-+||.-.+ +-+++ |.++..++..+++|+|+|..|.++|..+... |. +++.+|.
T Consensus 174 ~yg~g~s~-~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~----Ga-------~ViV~d~ 226 (406)
T TIGR00936 174 RYGTGQST-IDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARGM----GA-------RVIVTEV 226 (406)
T ss_pred ccccchhH-HHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhhC----cC-------EEEEEeC
Confidence 35777555 55555 5577789999999999999999999976643 62 4777765
No 237
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=58.17 E-value=13 Score=43.05 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=29.6
Q ss_pred CCCCCCc--eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 9 KTRLSDN--TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 9 gK~i~d~--kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.|++++. .|+|+|||.||.++|..+. +.|+ +++++|++
T Consensus 32 ~~~~~~~~~DViIVGaGPAG~~aA~~LA----~~G~-------~VlllEr~ 71 (450)
T PLN00093 32 SKKLSGRKLRVAVIGGGPAGACAAETLA----KGGI-------ETFLIERK 71 (450)
T ss_pred CCCcCCCCCeEEEECCCHHHHHHHHHHH----hCCC-------cEEEEecC
Confidence 4445544 6899999999999999876 4786 57888875
No 238
>PLN02928 oxidoreductase family protein
Probab=57.98 E-value=26 Score=39.52 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=29.4
Q ss_pred CCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 702 KTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 702 ~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
+..|.++++.|+|.|.- |-.+|+.+..+++ ++..+|
T Consensus 154 ~~~l~gktvGIiG~G~I--G~~vA~~l~afG~-~V~~~d 189 (347)
T PLN02928 154 GDTLFGKTVFILGYGAI--GIELAKRLRPFGV-KLLATR 189 (347)
T ss_pred ccCCCCCEEEEECCCHH--HHHHHHHHhhCCC-EEEEEC
Confidence 45799999999999999 9999999987765 444333
No 239
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=57.97 E-value=13 Score=42.54 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=26.3
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
-+||+|||.||+++|.-+.. .| .++.++|++
T Consensus 2 DvvVIGaGpaG~~aA~~aa~----~g-------~~v~lie~~ 32 (463)
T TIGR02053 2 DLVIIGSGAAAFAAAIKAAE----LG-------ASVAMVERG 32 (463)
T ss_pred CEEEECCCHHHHHHHHHHHH----CC-------CeEEEEeCC
Confidence 37999999999999998874 67 479999975
No 240
>PRK07411 hypothetical protein; Validated
Probab=57.89 E-value=10 Score=43.22 Aligned_cols=40 Identities=23% Similarity=0.283 Sum_probs=35.0
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++|++.||+++|+|.-|-.+++.|.. .|+ .+|.++|..=+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~----~Gv------g~l~lvD~D~v 73 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAA----AGI------GRIGIVDFDVV 73 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHH----cCC------CEEEEECCCEe
Confidence 67999999999999999999998884 787 49999998544
No 241
>PLN02928 oxidoreductase family protein
Probab=57.86 E-value=30 Score=39.05 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=33.3
Q ss_pred cCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 8 TKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 8 ~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.+..+.+-++.|+|.|..|..+|+++. .+|. +|+.+|+.
T Consensus 153 ~~~~l~gktvGIiG~G~IG~~vA~~l~----afG~-------~V~~~dr~ 191 (347)
T PLN02928 153 IGDTLFGKTVFILGYGAIGIELAKRLR----PFGV-------KLLATRRS 191 (347)
T ss_pred cccCCCCCEEEEECCCHHHHHHHHHHh----hCCC-------EEEEECCC
Confidence 356788999999999999999999987 4885 78888874
No 242
>PRK08223 hypothetical protein; Validated
Probab=57.84 E-value=11 Score=41.86 Aligned_cols=40 Identities=18% Similarity=0.109 Sum_probs=34.8
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+||.+-||+++|+|..|-.+++.|.. .|+ .+|.++|.+=+
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~----aGV------G~i~lvD~D~V 62 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLAR----LGI------GKFTIADFDVF 62 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHH----hCC------CeEEEEeCCCc
Confidence 57899999999999999999998884 787 48999998655
No 243
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=57.81 E-value=11 Score=48.11 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=28.1
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.-||+|+|||.||+++|.-|.. .|. +|+++|+.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLAR----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHH----CCC-------eEEEEecc
Confidence 4689999999999999998874 674 68999875
No 244
>PRK08244 hypothetical protein; Provisional
Probab=57.80 E-value=13 Score=43.00 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=27.6
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+..|+|+|||.+|+++|-.|.+ .|+ ++.++|+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~----~G~-------~v~viEr~ 34 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL----AGV-------KTCVIERL 34 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH----CCC-------cEEEEecC
Confidence 3579999999999999998874 786 57888875
No 245
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=57.71 E-value=7.9 Score=47.27 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=35.8
Q ss_pred CcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCcee
Q psy14377 703 TRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTIL 744 (848)
Q Consensus 703 ~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i 744 (848)
.+|++.||+++|||.- |.-+|+.|+.+++.+.++.|.+.+
T Consensus 334 ekL~~~kVLIvGaGGL--Gs~VA~~La~~GVg~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTL--GCNVARCLIGWGVRHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHH--HHHHHHHHHHcCCCeEEEEcCCEE
Confidence 5688999999999999 999999999999999988875544
No 246
>PRK07538 hypothetical protein; Provisional
Probab=57.69 E-value=13 Score=41.78 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=26.8
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+|+|+|||-||+++|..|.+ .|+ ++.++|+.-
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~----~G~-------~v~v~E~~~ 33 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQ----RGI-------EVVVFEAAP 33 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHh----CCC-------cEEEEEcCC
Confidence 379999999999999988774 686 477888753
No 247
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=57.68 E-value=10 Score=41.97 Aligned_cols=38 Identities=26% Similarity=0.477 Sum_probs=33.7
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
++|++-+|+++|+|..|.-||+.|+.+ | .++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala----G------Vg~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA----G------VKSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc----C------CCeEEEEcCC
Confidence 467889999999999999999998876 9 5799999986
No 248
>PRK06126 hypothetical protein; Provisional
Probab=57.63 E-value=13 Score=43.37 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=30.0
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+.++.+|+|+|||.+|+++|-+|. +.|+ ++.++|+..
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La----~~G~-------~v~viEr~~ 40 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLG----RRGV-------DSILVERKD 40 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHH----HCCC-------cEEEEeCCC
Confidence 345789999999999999998887 4786 578888753
No 249
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=57.50 E-value=13 Score=44.03 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=28.1
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..-+|+|+|||.||+++|..+.. .|. +++++|+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~----~G~-------~V~v~e~~ 169 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRR----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH----CCC-------eEEEEecC
Confidence 45689999999999999998873 674 58889864
No 250
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=57.47 E-value=12 Score=40.94 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=25.8
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcC-CCccccCCeEEEEcCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEG-TSEQDARDKIWMVDSK 57 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G-~~~e~~~~ni~m~Dsk 57 (848)
.|+|+|||-||+++|..|.+ .| + ++.++|+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~----~G~~-------~v~v~E~~ 32 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR----LGKI-------KIALIEAN 32 (382)
T ss_pred CEEEECccHHHHHHHHHHhc----CCCc-------eEEEEeCC
Confidence 37999999999999998884 77 6 57777875
No 251
>PRK06475 salicylate hydroxylase; Provisional
Probab=57.44 E-value=12 Score=41.74 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=26.2
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.||+|+|||-||+++|-+|.+ .|. ++.++++.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~----~G~-------~V~i~E~~ 34 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA----RGW-------AVTIIEKA 34 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh----CCC-------cEEEEecC
Confidence 589999999999999998874 776 46677764
No 252
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=57.38 E-value=13 Score=43.56 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=27.7
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
-++..+||+|||.||+++|.-+. +.|+ ++.++|.+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la----~~G~-------~v~li~~~ 243 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAA----RKGI-------RTGIVAER 243 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHH----HCCC-------cEEEEecC
Confidence 44678999999999999999887 4786 46666654
No 253
>PRK12831 putative oxidoreductase; Provisional
Probab=57.37 E-value=13 Score=43.07 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=28.1
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
...+|+|+|||.||+++|.-+.. .|. ++.++|+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~----~G~-------~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAK----MGY-------DVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh----CCC-------eEEEEecC
Confidence 45689999999999999998874 674 68888864
No 254
>PTZ00188 adrenodoxin reductase; Provisional
Probab=57.11 E-value=18 Score=43.08 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=28.4
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
-.||+|+|||.||+.||+-+.. ..|. +|.|+|+....
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~---~~g~-------~VtlfEk~p~p 75 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLK---HERV-------KVDIFEKLPNP 75 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHH---hcCC-------eEEEEecCCCC
Confidence 5689999999999999995442 2463 68999987443
No 255
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=57.04 E-value=15 Score=42.41 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=27.4
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+..|+|+|||.||+++|.-+. +.| .++.++|.+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa----~~G-------~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAG----QLG-------LKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHH----hCC-------CeEEEEecC
Confidence 457999999999999999776 367 479999964
No 256
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=56.86 E-value=14 Score=41.19 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=28.0
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
..+|+|+|||.||+++|-.|.+ .|+ ++.++|+..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~----~G~-------~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL----AGI-------DSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh----cCC-------CEEEEEcCC
Confidence 4689999999999999988874 786 477778755
No 257
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=56.78 E-value=15 Score=40.07 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=41.2
Q ss_pred cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 675 RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 675 ~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
++.=||=|.. |++.+++-.+.+. +.+++++|||-| +-+++-.|.+.+++++.+.+
T Consensus 99 ~l~G~NTD~~--------Gf~~~L~~~~~~~-~~~vlilGaGGa--arAi~~aL~~~g~~~i~i~n 153 (272)
T PRK12550 99 HLKAYNTDYI--------AIAKLLASYQVPP-DLVVALRGSGGM--AKAVAAALRDAGFTDGTIVA 153 (272)
T ss_pred EEEEEecCHH--------HHHHHHHhcCCCC-CCeEEEECCcHH--HHHHHHHHHHCCCCEEEEEe
Confidence 4666888854 4556666555543 458999999999 99999999998887776554
No 258
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=56.54 E-value=17 Score=44.77 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=29.1
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
-..-||+|+|||.||+++|.-|.. .|. ++.++|+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~----~G~-------~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAK----RGY-------DVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH----CCC-------eEEEEecC
Confidence 345689999999999999998874 674 78999974
No 259
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=56.46 E-value=14 Score=42.47 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=28.2
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
..-||||+|||.||+++|..+.. .|. ++.++|+.-
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~----~g~-------~V~lie~~~ 173 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR----KGY-------DVTIFEARD 173 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh----CCC-------eEEEEccCC
Confidence 34689999999999999997763 563 788988753
No 260
>PRK07121 hypothetical protein; Validated
Probab=56.30 E-value=15 Score=42.57 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=28.9
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
.+..|||+|+|.||+++|--+. +.|+ +++++++...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aa----e~G~-------~VillEK~~~ 54 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAA----AAGA-------RVLVLERAAG 54 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHH----HCCC-------eEEEEeCCCC
Confidence 3678999999999999997655 3674 7889897665
No 261
>PLN02568 polyamine oxidase
Probab=56.15 E-value=16 Score=43.58 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=29.6
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++-+|||+|||.||++||..|.+ .|... .-.+|.+++..-.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~----~g~~~--~~~~v~v~E~~~~ 44 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYT----SSAAN--DMFELTVVEGGDR 44 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh----ccccc--CCceEEEEeCCCC
Confidence 34689999999999999999984 56311 1146888876543
No 262
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=55.91 E-value=5.8 Score=35.22 Aligned_cols=65 Identities=20% Similarity=0.176 Sum_probs=41.1
Q ss_pred eEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHH-HhhhccccchhhccccCCCceEE
Q psy14377 709 TILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASV-AIAGLLASLRITKTRLSDNTILF 778 (848)
Q Consensus 709 riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~ 778 (848)
||.|+|+|.- |.++++.+........ +-.+++...++....+ +..+.........++++++|+.|
T Consensus 1 kI~iIG~G~m--g~al~~~l~~~g~~~~---~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvi 66 (96)
T PF03807_consen 1 KIGIIGAGNM--GSALARGLLASGIKPH---EVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVI 66 (96)
T ss_dssp EEEEESTSHH--HHHHHHHHHHTTS-GG---EEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEE
T ss_pred CEEEECCCHH--HHHHHHHHHHCCCCce---eEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEE
Confidence 6889999999 9999999998864111 1112233344444443 44454433345677778899765
No 263
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=55.84 E-value=14 Score=38.64 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=25.5
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+++|+|||.||+..|..+.+ .| .++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~----~g-------~~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR----AN-------LKTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH----CC-------CCEEEEecc
Confidence 68999999999999997654 36 358899975
No 264
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=55.77 E-value=14 Score=43.35 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=28.4
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
...+|+|+|||.+|+++|.+|. +.|+ ++.++|++-
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~----~~G~-------~v~viE~~~ 56 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLA----QQGV-------PVVLLDDDD 56 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHH----hCCC-------cEEEEeCCC
Confidence 4568999999999999998877 4786 577888753
No 265
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=55.65 E-value=15 Score=41.99 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=28.5
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+..|||+|+|.||+++|--+. +.|+ +++++++..
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa----~~G~-------~V~vlEk~~ 37 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAR----EAGA-------SVLLLEAAP 37 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHH----HCCC-------eEEEEeCCC
Confidence 5678999999999999998766 4675 688888764
No 266
>PLN00203 glutamyl-tRNA reductase
Probab=55.61 E-value=24 Score=42.06 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCC-cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 225 AGLLASLRITKT-RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 225 Agll~Al~~tg~-~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+++=-|.++.+. +|++.+|+|+|||..|..++..+.. .| .++||++++
T Consensus 250 ~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~----~G------~~~V~V~nR 298 (519)
T PLN00203 250 AAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS----KG------CTKMVVVNR 298 (519)
T ss_pred HHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh----CC------CCeEEEEeC
Confidence 444445555554 5889999999999999999887654 36 457888765
No 267
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=55.48 E-value=15 Score=41.30 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=25.2
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
.||+|+|||-||+++|..|.+ .|. -++.++++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~----~g~------~~v~v~Er 32 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCK----HSH------LNVQLFEA 32 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHh----cCC------CCEEEEec
Confidence 489999999999999999884 552 14667676
No 268
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=55.47 E-value=19 Score=43.54 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=32.7
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+.+++.|++|+|||-||+|+|-.|.. +-.++. .+|.++++.-.
T Consensus 18 ~~~~~~~a~IIGaGiAGLAAA~~L~~---dg~~~G----~~VtIlEk~~~ 60 (576)
T PRK13977 18 EGVDNKKAYIIGSGLASLAAAVFLIR---DGQMPG----ENITILEELDV 60 (576)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHH---ccCCCC----CcEEEEeCCCC
Confidence 45778999999999999999998874 222222 68999988644
No 269
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=55.36 E-value=13 Score=39.20 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=25.5
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
..|+|+|||.||+.+|-.|... |. ++.++|++.-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~----G~-------~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA----GI-------DVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT----TC-------EEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhc----cc-------ccccchhccc
Confidence 4799999999999999987765 75 4888888543
No 270
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=55.35 E-value=16 Score=41.80 Aligned_cols=32 Identities=16% Similarity=0.353 Sum_probs=26.1
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.+++|+|||.||+++|..+.. .| .++.++|++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~----~G-------~~V~viEk~ 33 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ----LN-------KRVLVVEKR 33 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh----CC-------CeEEEEecC
Confidence 368999999999999987763 56 478898874
No 271
>PLN00106 malate dehydrogenase
Probab=55.29 E-value=50 Score=37.12 Aligned_cols=156 Identities=13% Similarity=0.075 Sum_probs=85.4
Q ss_pred ccccccCCCCCCceEEEecc-chhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccC-CCCCCCChhhhhhc-cc
Q psy14377 3 ASLRITKTRLSDNTILFQGA-GEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKD-RPEGGVTGHKVHYA-KK 79 (848)
Q Consensus 3 nal~i~gK~i~d~kiV~~GA-GaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~-R~d~~l~~~k~~~a-~~ 79 (848)
.|++-.|-.-. .||++.|| |-.|-++|.++.+ .|+- +.+.++|..- -++ --| |.+--..+- .+
T Consensus 8 ~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~----~~~~-----~el~L~Di~~--~~g~a~D--l~~~~~~~~i~~ 73 (323)
T PLN00106 8 RACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM----NPLV-----SELHLYDIAN--TPGVAAD--VSHINTPAQVRG 73 (323)
T ss_pred hccccccCCCC-CEEEEECCCCHHHHHHHHHHHh----CCCC-----CEEEEEecCC--CCeeEch--hhhCCcCceEEE
Confidence 34555554444 59999999 9999999998874 4553 5899999755 111 112 221111100 01
Q ss_pred -CCCCCCHHHHhccc-----------C------------CCchhh---hhccCCccccccccCCccc----cc--cccCC
Q psy14377 80 -HAPVKNLADVVKTV-----------K------------PSILIE---ELKGLSQRDFLSSWLNRGP----CL--NCWGK 126 (848)
Q Consensus 80 -~~~~~tL~ea~~~s-----------~------------~~v~~g---~vk~M~~~piifA~sn~~~----~i--~atG~ 126 (848)
+ ...++.++++++ + .+++.. .++..+.+.++++.||--+ ++ ..+..
T Consensus 74 ~~-~~~d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~ 152 (323)
T PLN00106 74 FL-GDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKA 152 (323)
T ss_pred Ee-CCCCHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHc
Confidence 0 112456666651 1 122222 4444488899999999222 22 11233
Q ss_pred cCccCCcCccceeeecccChhhHHHHHHhhccCChhhHhhhhhccccc-c-cccC
Q psy14377 127 RDFEQDKQGISYSIHASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK-G-LIVK 179 (848)
Q Consensus 127 ~~fdypnQ~Nnv~vfp~Lgl~~m~~~A~~ala~~v~d~~~~ay~~~~~-G-~lYP 179 (848)
+ .| .-|++++...|+..-|+..=++.+..+.. ...+|.+=+- | ..+|
T Consensus 153 s--~~--p~~~viG~~~LDs~Rl~~~lA~~lgv~~~--~V~~~ViGeHg~~s~vp 201 (323)
T PLN00106 153 G--VY--DPKKLFGVTTLDVVRANTFVAEKKGLDPA--DVDVPVVGGHAGITILP 201 (323)
T ss_pred C--CC--CcceEEEEecchHHHHHHHHHHHhCCChh--heEEEEEEeCCCccEee
Confidence 3 11 23567777777776677666777665433 2345544444 3 5566
No 272
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=55.12 E-value=19 Score=37.63 Aligned_cols=34 Identities=24% Similarity=0.480 Sum_probs=28.2
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
+++-|++++|+|..|..-+++|+. .|. +|.++|.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~----~ga-------~VtVvsp 40 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLK----AGA-------QLRVIAE 40 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHH----CCC-------EEEEEcC
Confidence 445599999999999999999984 674 7888876
No 273
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=55.08 E-value=17 Score=41.44 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=28.3
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.+..|+|+|||.||+++|.-+.+ .| .++.++|++
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~----~G-------~~v~liE~~ 37 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAK----LG-------KRVAVIERY 37 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHh----CC-------CEEEEEecc
Confidence 34679999999999999998773 67 489999975
No 274
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=55.05 E-value=15 Score=39.41 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=28.2
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
||+++|+|..|.-+++.|+.. | .++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~----G------vg~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM----G------FGQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc----C------CCeEEEEeCC
Confidence 689999999999999988765 8 5789999986
No 275
>PRK09897 hypothetical protein; Provisional
Probab=54.98 E-value=16 Score=43.72 Aligned_cols=39 Identities=15% Similarity=0.038 Sum_probs=29.6
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKD 63 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~ 63 (848)
||+|+|||++|++++.-|+. .+.+ -+|.++|...-+-.+
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~----~~~~-----l~V~lfEp~~~~G~G 41 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQ----QQTP-----LSISIFEQADEAGVG 41 (534)
T ss_pred eEEEECCcHHHHHHHHHHHh----cCCC-----CcEEEEecCCCCCcc
Confidence 79999999999999998874 3322 379999986544444
No 276
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=54.96 E-value=17 Score=40.69 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=28.4
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
...|+|+|||-||+++|-+|. ..|+ ++.++|+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~----~~G~-------~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALA----RAGL-------DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHH----hCCC-------cEEEEccC
Confidence 467999999999999999888 4785 68888886
No 277
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=54.88 E-value=16 Score=42.28 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=64.2
Q ss_pred chHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCce
Q psy14377 664 SAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTI 743 (848)
Q Consensus 664 naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~ 743 (848)
.||+.=+|-|...-. + .|.-+|+-+++=-|.+.. .++++.+++++|||.+ |-.+|..|...+++++.+++.
T Consensus 143 ~A~~~aKrVrteT~I-~---~~~vSv~~~Av~la~~~~-~~l~~kkvlviGaG~~--a~~va~~L~~~g~~~I~V~nR-- 213 (414)
T PRK13940 143 KVFATAKRVRSETRI-G---HCPVSVAFSAITLAKRQL-DNISSKNVLIIGAGQT--GELLFRHVTALAPKQIMLANR-- 213 (414)
T ss_pred HHHHHHHHHHhccCC-C---CCCcCHHHHHHHHHHHHh-cCccCCEEEEEcCcHH--HHHHHHHHHHcCCCEEEEECC--
Confidence 566666666665321 1 122234444444444443 3488999999999999 999999998887777665552
Q ss_pred ecCCCCCCchH--HHhhh--ccccchhhccccCCCceEEeecCCCcch
Q psy14377 744 LFQGAGEGTAS--VAIAG--LLASLRITKTRLSDNTILFQGSGEGTAS 787 (848)
Q Consensus 744 i~~~r~~~~~~--~~~~~--~~~~~r~~~~~~~~~~~~~~~s~~~~~~ 787 (848)
+...+. ....+ -....-.+.+.+.++||.|..++-...-
T Consensus 214 -----t~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~v 256 (414)
T PRK13940 214 -----TIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEYI 256 (414)
T ss_pred -----CHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCee
Confidence 211111 11111 1111123366788999999877665443
No 278
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=54.83 E-value=15 Score=36.18 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=26.8
Q ss_pred EEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 18 LFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 18 V~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+|+|+|++|+++++-|+. .. + ....-+|.++|....
T Consensus 1 AIIG~G~~G~~~l~~L~~----~~-~-~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLR----QA-D-PKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHH----hc-C-CCCCCEEEEEcCCCc
Confidence 489999999999997775 21 1 112369999999765
No 279
>PLN02676 polyamine oxidase
Probab=54.66 E-value=16 Score=42.74 Aligned_cols=36 Identities=17% Similarity=0.369 Sum_probs=29.0
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
..+++|+|||.+|++||..|.+ .|. +++.+++.+.-
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~----~g~------~~v~vlE~~~~ 61 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSE----AGI------EDILILEATDR 61 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHH----cCC------CcEEEecCCCC
Confidence 5579999999999999998874 564 36888888654
No 280
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=54.53 E-value=17 Score=39.63 Aligned_cols=35 Identities=11% Similarity=0.081 Sum_probs=28.2
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
...++|+|||.+|+++|-.|.+ .| .+|.++|+...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~----~g-------~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLAR----RG-------LRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHH----CC-------CeEEEEecccC
Confidence 4568999999999999987774 56 47999987543
No 281
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=54.52 E-value=16 Score=42.34 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=30.2
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+..+++|+|||-+||+.|.-|.+ .|++ ++.++|+..
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~----~g~~------~~~i~Ek~~ 42 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQ----AGVP------DFVIFEKRD 42 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHH----cCCC------cEEEEEccC
Confidence 456789999999999999998884 7875 377777763
No 282
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=54.51 E-value=17 Score=40.79 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=27.3
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
..+|+|+|||-||+++|-+|. +.|+ ++.++|+.-
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~----~~G~-------~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLH----KAGI-------DNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHH----HCCC-------CEEEEECCC
Confidence 357999999999999998876 4786 467777754
No 283
>PRK07190 hypothetical protein; Provisional
Probab=54.47 E-value=16 Score=42.73 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=28.0
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+...|+|+|||.+|+.+|-.|. ..|+ ++.++|+..
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~La----r~Gi-------~V~llEr~~ 38 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQ----LCGL-------NTVIVDKSD 38 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHH----HcCC-------CEEEEeCCC
Confidence 3468999999999999998776 4786 578888764
No 284
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=54.39 E-value=16 Score=46.44 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=29.0
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..-||+|+|||.||++||..|.. .|. ++.++|+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar----~G~-------~VtVfE~~ 338 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAV----EGF-------PVTVFEAF 338 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH----CCC-------eEEEEeeC
Confidence 46799999999999999998884 775 68888875
No 285
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=54.30 E-value=11 Score=42.14 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=25.8
Q ss_pred eEEecCcchhhHHHHHHHHHHHhccccccccc-Cce
Q psy14377 709 TILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTI 743 (848)
Q Consensus 709 riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~ 743 (848)
.|+|+|||.| |+..|..|..++.+-...++ +|+
T Consensus 3 siaIVGaGiA--Gl~aA~~L~~aG~~vtV~eKg~Gv 36 (331)
T COG3380 3 SIAIVGAGIA--GLAAAYALREAGREVTVFEKGRGV 36 (331)
T ss_pred cEEEEccchH--HHHHHHHHHhcCcEEEEEEcCCCc
Confidence 4899999999 99999999999864444443 443
No 286
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=54.29 E-value=15 Score=40.65 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=26.0
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.+|+|+|||.||+++|..|.+ .|-. -++.++|+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~----~g~g-----~~v~liE~~ 35 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQ----AAPH-----LPVTVVDAA 35 (403)
T ss_pred CCEEEECccHHHHHHHHHHhc----CCCC-----CEEEEEeCC
Confidence 368999999999999998873 5411 167888875
No 287
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=54.14 E-value=17 Score=40.65 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=27.5
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhc--CCCccccCCeEEEEcCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKE--GTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~--G~~~e~~~~ni~m~DskG 58 (848)
..|||+|||.+|++||--|.+ . | .+|.++|+..
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~----~~~g-------~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQE----RYPG-------ARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHH----hCCC-------CeEEEEeCCC
Confidence 579999999999999988774 4 5 4799999853
No 288
>KOG1399|consensus
Probab=53.97 E-value=11 Score=44.28 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=26.1
Q ss_pred hCCcCCCceEEEeccchHHHHHHHHHHHH
Q psy14377 234 TKTRLSDNTILFQGAGEASLGIADLCVMA 262 (848)
Q Consensus 234 tg~~l~d~riv~~GAGaAg~gia~ll~~~ 262 (848)
....++++++|++|+|..|.=|+..|...
T Consensus 180 ~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ 208 (448)
T KOG1399|consen 180 SPEKFRDKVVLVVGCGNSGMDISLDLLRV 208 (448)
T ss_pred CcccccCceEEEECCCccHHHHHHHHHHh
Confidence 47889999999999999999999998765
No 289
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=53.97 E-value=18 Score=38.85 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=29.4
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
||+++|+|+-|-.+++.|.. .|+ .+|.++|.+=+
T Consensus 1 kVlvvG~GGlG~eilk~La~----~Gv------g~i~ivD~D~V 34 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLAL----MGF------GQIHVIDMDTI 34 (234)
T ss_pred CEEEECCCHHHHHHHHHHHH----cCC------CeEEEEeCCEE
Confidence 68999999999999999985 787 48999998644
No 290
>PRK07208 hypothetical protein; Provisional
Probab=53.95 E-value=18 Score=41.34 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=27.5
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
...+|||+|||-||+++|..|.+ .|. ++.++++.
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~----~g~-------~v~v~E~~ 36 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLK----RGY-------PVTVLEAD 36 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHH----CCC-------cEEEEecC
Confidence 34579999999999999988874 564 68888875
No 291
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=53.89 E-value=16 Score=41.98 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=27.7
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.-.+||+|||.||++||.-+. +.| .++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa----~~G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAG----QLG-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHH----hCC-------CeEEEEEcc
Confidence 457999999999999999877 367 479999974
No 292
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=53.78 E-value=16 Score=40.83 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=28.1
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
.+|+|+|||.+|+.+|..|.+. | .++.++|+.-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC----C-------CeEEEEeCCC
Confidence 4899999999999999988764 6 4699999875
No 293
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=53.72 E-value=15 Score=40.88 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=26.8
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
..|+|+|||.||+++|-.|. +.|+ ++.++|+.-
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~----~~G~-------~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQ----GSGL-------EVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHh----cCCC-------EEEEEcCCC
Confidence 36899999999999998876 3675 678888753
No 294
>PLN02463 lycopene beta cyclase
Probab=53.33 E-value=19 Score=41.97 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=28.7
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+.....|+|+|||.||+++|..+.+ .|+ +|.++|+.-
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~----~Gl-------~V~liE~~~ 61 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSE----AGL-------SVCCIDPSP 61 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHH----CCC-------eEEEeccCc
Confidence 3445689999999999999987763 575 688888743
No 295
>PRK14727 putative mercuric reductase; Provisional
Probab=53.27 E-value=20 Score=41.56 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=31.0
Q ss_pred ccccccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 3 ASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 3 nal~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
|+|+..-. +..+||+|||.||+++|.-+.+ .| +++.++|+.
T Consensus 8 ~~~~~~~~---~~dvvvIG~G~aG~~~a~~~~~----~g-------~~v~~ie~~ 48 (479)
T PRK14727 8 NCMTRSKL---QLHVAIIGSGSAAFAAAIKAAE----HG-------ARVTIIEGA 48 (479)
T ss_pred cccccCCC---CCcEEEECCCHHHHHHHHHHHh----CC-------CeEEEEEcc
Confidence 34444433 4579999999999999998874 67 478888865
No 296
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=53.16 E-value=34 Score=34.04 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCchHHHhhhccccchh
Q psy14377 688 SVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTASVAIAGLLASLRI 766 (848)
Q Consensus 688 aV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~~~~~~~~~~~~r~ 766 (848)
-++..|++.-++..|.+++.++++++|.+.. -|--+|.+|..... .+..|+ +. +.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~-vG~pla~lL~~~ga-tV~~~~~~t----------------------~~ 64 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGI-VGAPLQCLLQRDGA-TVYSCDWKT----------------------IQ 64 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEeCCCC----------------------cC
Confidence 3577888889999999999999999999776 57778888876432 222333 11 24
Q ss_pred hccccCCCceEEeecCC
Q psy14377 767 TKTRLSDNTILFQGSGE 783 (848)
Q Consensus 767 ~~~~~~~~~~~~~~s~~ 783 (848)
+++.+..|||.+...++
T Consensus 65 l~~~v~~ADIVvsAtg~ 81 (140)
T cd05212 65 LQSKVHDADVVVVGSPK 81 (140)
T ss_pred HHHHHhhCCEEEEecCC
Confidence 56688999999876554
No 297
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=53.02 E-value=18 Score=41.58 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=27.6
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+..+||+|+|.||+++|.-+.+ .| .++.++|+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~----~G-------~~V~lie~~ 36 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQ----LG-------LKTAVVEKK 36 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHh----CC-------CeEEEEecC
Confidence 4679999999999999987763 67 479999975
No 298
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=52.74 E-value=17 Score=41.34 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=28.3
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCC---ChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGT---SEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~---s~~eA~~~i~~vD~k 283 (848)
++++|+|+|.+|+-+|..|...+.+.+. ..-....+|.++++.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 219 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAG 219 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCC
Confidence 5899999999999999998876533210 000012567877653
No 299
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=52.69 E-value=18 Score=46.33 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=27.9
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.-||+|+|||.||++||.-|.+ .|. ++.++|+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~----~G~-------~VtV~E~~ 462 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVK----YGV-------DVTVYEAL 462 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHH----cCC-------cEEEEecC
Confidence 4689999999999999998874 674 68888875
No 300
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=52.64 E-value=17 Score=40.82 Aligned_cols=32 Identities=31% Similarity=0.300 Sum_probs=28.7
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
||+++|+|.-|.-+|+.|+.+ | .++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a----G------Vg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW----G------VRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc----C------CCeEEEECCC
Confidence 689999999999999998876 9 5799999975
No 301
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=52.62 E-value=18 Score=40.44 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=25.0
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
.|+|+|||-||++||.-|.. .|. .|.++|+
T Consensus 3 siaIVGaGiAGl~aA~~L~~----aG~-------~vtV~eK 32 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALRE----AGR-------EVTVFEK 32 (331)
T ss_pred cEEEEccchHHHHHHHHHHh----cCc-------EEEEEEc
Confidence 48999999999999998874 674 5778875
No 302
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=52.48 E-value=17 Score=40.39 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=26.5
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.+|+|+|||.+|+++|-.|. +.|. ++.++|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~----~~G~-------~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFA----QKGI-------KTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHH----cCCC-------eEEEecCC
Confidence 36899999999999998876 4786 57888874
No 303
>KOG0685|consensus
Probab=52.43 E-value=12 Score=44.10 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=25.1
Q ss_pred CcCCCceEEecCcchhhHHHHHHHHHHHhcccc
Q psy14377 703 TRLSDNTILFQGAGEGTASVAVAGLLASLRITK 735 (848)
Q Consensus 703 ~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~ 735 (848)
+...+.||||+|||.| |++.|..|++.+..+
T Consensus 17 ~~~~~~kIvIIGAG~A--GLaAA~rLle~gf~~ 47 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIA--GLAAATRLLENGFID 47 (498)
T ss_pred hccCCceEEEECCchH--HHHHHHHHHHhCCce
Confidence 3456669999999999 999999999665443
No 304
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=52.28 E-value=17 Score=44.14 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=27.5
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.-||+|+|||.||+++|..+.. .|. +++++|+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~----~G~-------~Vtv~e~~ 225 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLR----KGH-------DVTIFDAN 225 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHH----CCC-------cEEEEecC
Confidence 4589999999999999998874 674 68888864
No 305
>PRK11445 putative oxidoreductase; Provisional
Probab=52.24 E-value=16 Score=40.28 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=25.3
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
..|+|+|||.||.++|..|.. . . ++.++|++-
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~----~-~-------~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG----K-M-------KVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc----c-C-------CEEEEECCC
Confidence 368999999999999988763 2 2 688888754
No 306
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=52.07 E-value=29 Score=39.90 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
++.+++..|-.|..|++.++.|+|.|..|..+|+.+... |+ +++.+|.
T Consensus 100 ~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~----G~-------~V~~~Dp 147 (381)
T PRK00257 100 LGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL----GW-------KVLVCDP 147 (381)
T ss_pred HHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC----CC-------EEEEECC
Confidence 778888888889999999999999999999999987754 75 5777775
No 307
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=52.00 E-value=20 Score=39.87 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=29.6
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
||+++|||+-|-.+++.|.. .|+. +|.++|.+=+
T Consensus 1 kVlVVGaGGlG~eilknLal----~Gvg------~I~IvD~D~V 34 (291)
T cd01488 1 KILVIGAGGLGCELLKNLAL----SGFR------NIHVIDMDTI 34 (291)
T ss_pred CEEEECCCHHHHHHHHHHHH----cCCC------eEEEECCCEe
Confidence 68999999999999999985 7874 9999998644
No 308
>PRK13748 putative mercuric reductase; Provisional
Probab=51.99 E-value=19 Score=42.31 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=28.8
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
++..+||+|||.||+++|..+.. .| .++.++|+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~----~G-------~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE----QG-------ARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh----CC-------CeEEEEecC
Confidence 46789999999999999998874 67 479999975
No 309
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=51.67 E-value=23 Score=35.74 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=33.6
Q ss_pred HHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 231 LRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 231 l~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
....+..|.++++.|+|.|..|..+|+++... |+ +++.+|+.
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f----G~-------~V~~~d~~ 68 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF----GM-------RVIGYDRS 68 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT----T--------EEEEEESS
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC----Cc-------eeEEeccc
Confidence 35577899999999999999999999998855 74 57777764
No 310
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=51.64 E-value=31 Score=34.84 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=46.7
Q ss_pred ccccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccCCCCC
Q psy14377 5 LRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVK 84 (848)
Q Consensus 5 l~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~~~~~ 84 (848)
....++.+.+.+|.|+|.|..|-++|+++. .+|. +|+.+|+..--.. ....... ...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~----~fG~-------~V~~~d~~~~~~~--------~~~~~~~----~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLK----AFGM-------RVIGYDRSPKPEE--------GADEFGV----EYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHH----HTT--------EEEEEESSCHHHH--------HHHHTTE----EES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeee----cCCc-------eeEEecccCChhh--------hcccccc----eee
Confidence 356788999999999999999999999998 4886 6788887432100 0111111 235
Q ss_pred CHHHHhcccCCCchh
Q psy14377 85 NLADVVKTVKPSILI 99 (848)
Q Consensus 85 tL~ea~~~s~~~v~~ 99 (848)
+|+|.++. .|+++
T Consensus 84 ~l~ell~~--aDiv~ 96 (178)
T PF02826_consen 84 SLDELLAQ--ADIVS 96 (178)
T ss_dssp SHHHHHHH---SEEE
T ss_pred ehhhhcch--hhhhh
Confidence 79999996 56655
No 311
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=51.48 E-value=17 Score=46.70 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=28.3
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..-||||+|||.||+++|..|.. .|. +|.++|++
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar----~G~-------~VtV~Ek~ 571 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLAR----AGH-------PVTVFERE 571 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH----cCC-------eEEEEecc
Confidence 35689999999999999998874 674 68888875
No 312
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=51.36 E-value=33 Score=35.60 Aligned_cols=52 Identities=25% Similarity=0.215 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhhh--CCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 686 TASVAVAGLLASLRIT--KTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 686 TaaV~LAgllaAlr~t--~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
||-=+..++-.+++.. +.+|++.+++|.|.|.- |..+|+.|.+.+. ++.++|
T Consensus 5 Tg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~v--G~~~A~~L~~~G~-~Vvv~D 58 (200)
T cd01075 5 TAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKV--GYKLAEHLLEEGA-KLIVAD 58 (200)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHH--HHHHHHHHHHCCC-EEEEEc
Confidence 5555556666777764 88999999999999999 9999999999885 444555
No 313
>KOG2337|consensus
Probab=51.32 E-value=18 Score=43.23 Aligned_cols=42 Identities=24% Similarity=0.244 Sum_probs=36.0
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcccc
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVK 62 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~ 62 (848)
.|++.|++.+|||.-|...||-|+. -|+ +||..||.--|=+.
T Consensus 337 ~is~~KcLLLGAGTLGC~VAR~Ll~----WGv------RhITFvDn~kVsyS 378 (669)
T KOG2337|consen 337 IISQTKCLLLGAGTLGCNVARNLLG----WGV------RHITFVDNGKVSYS 378 (669)
T ss_pred hhhcceeEEecCcccchHHHHHHHh----hcc------ceEEEEecCeeecc
Confidence 5889999999999999999998884 677 49999998666554
No 314
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=51.16 E-value=22 Score=40.61 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=21.9
Q ss_pred CCCCceEEEeccchhHHHHHHHHHH
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVM 35 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~ 35 (848)
+-+..||.|+|||+=|+|+|.++..
T Consensus 8 ~~~~~ki~ViGaG~wGtAlA~~l~~ 32 (365)
T PTZ00345 8 RCGPLKVSVIGSGNWGSAISKVVGE 32 (365)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHh
Confidence 4566899999999999999999984
No 315
>PRK06370 mercuric reductase; Validated
Probab=50.92 E-value=21 Score=41.00 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=28.2
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
++..+||+|+|.||+++|..+.. .| .++.++|+.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~----~G-------~~v~lie~~ 37 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAG----LG-------MKVALIERG 37 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHh----CC-------CeEEEEecC
Confidence 45679999999999999998874 67 478999864
No 316
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=50.91 E-value=18 Score=44.72 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=26.6
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhc--CCCccccCCeEEEEcCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKE--GTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~--G~~~e~~~~ni~m~DskG 58 (848)
.||+|+|||.||+++|-++.+ . |. +|.++++.-
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~----~~~G~-------~V~vlEr~~ 35 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKL----LDPAH-------EVTVVERNR 35 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHH----hCCCC-------eEEEEecCC
Confidence 489999999999999998874 4 43 678888753
No 317
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=50.87 E-value=20 Score=42.06 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=29.2
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
++..|||+|+|.||+++|--.. +.|+ +++++++...+
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa----~~Ga-------~VivlEK~~~~ 96 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAK----DAGM-------NPVILEKMPVA 96 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHH----HCCC-------CEEEEECCCCC
Confidence 3667999999999999996554 4674 68888987764
No 318
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=50.63 E-value=22 Score=42.37 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=29.8
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
.+..|||+|+|.||+++|--.. +.|. +++++++...+
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa----~~G~-------~v~llEk~~~~ 44 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITAR----KLGL-------DVVVLEKEPVF 44 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHH----HcCC-------eEEEEecCCCC
Confidence 4678999999999999998665 3664 68889987754
No 319
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=50.52 E-value=26 Score=40.76 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=27.9
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..-||+|+|+|.||+++|..+.. .|. ++.++|+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~----~G~-------~V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR----AGV-------QVVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH----cCC-------eEEEEecC
Confidence 45689999999999999998874 674 57788765
No 320
>PRK06834 hypothetical protein; Provisional
Probab=50.47 E-value=21 Score=41.71 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=28.5
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+..|+|+|||.+|+++|-.|.. .|+ ++.++|+.-
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~----~G~-------~v~vlEr~~ 36 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELAL----AGV-------DVAIVERRP 36 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHH----CCC-------cEEEEecCC
Confidence 5789999999999999998874 786 578888754
No 321
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=50.36 E-value=18 Score=42.90 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=26.3
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..|||+|||.||+++|.-+.. .|. +++++|+.
T Consensus 5 yDVvIIGgGpAGL~AA~~lar----~g~-------~V~liE~~ 36 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGR----AKL-------DTLIIEKD 36 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHH----CCC-------CEEEEecC
Confidence 469999999999999987763 564 68999964
No 322
>PTZ00367 squalene epoxidase; Provisional
Probab=50.32 E-value=22 Score=42.76 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=31.1
Q ss_pred ccCCCC---CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 7 ITKTRL---SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 7 i~gK~i---~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+..|+. .+.+|+|+|||.||.++|..|.. .|. ++.++++.
T Consensus 23 ~~~~~~~~~~~~dViIVGaGiaGlalA~aLar----~G~-------~V~VlEr~ 65 (567)
T PTZ00367 23 LRFKPARTNYDYDVIIVGGSIAGPVLAKALSK----QGR-------KVLMLERD 65 (567)
T ss_pred HccCccccccCccEEEECCCHHHHHHHHHHHh----cCC-------EEEEEccc
Confidence 444554 56789999999999999998874 674 68888874
No 323
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=50.12 E-value=20 Score=42.00 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=41.5
Q ss_pred cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccc
Q psy14377 675 RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTR 737 (848)
Q Consensus 675 ~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~ 737 (848)
++.=||=|-. |++.+++-.+.++++.+++|+|+|.+ |-+++..+...+. ++.
T Consensus 308 ~l~G~NTD~~--------G~~~~l~~~~~~~~~k~vlIiGaGgi--G~aia~~L~~~G~-~V~ 359 (477)
T PRK09310 308 KIEGYNTDGE--------GLFSLLKQKNIPLNNQHVAIVGAGGA--AKAIATTLARAGA-ELL 359 (477)
T ss_pred EEEEEecCHH--------HHHHHHHhcCCCcCCCEEEEEcCcHH--HHHHHHHHHHCCC-EEE
Confidence 3555777754 67778887788899999999999999 9999999998875 443
No 324
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=49.96 E-value=21 Score=40.37 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=28.5
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 286 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi 286 (848)
.|+||+|+|.||+..|..+.+. |- .-+|.++|++...
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~----~~-----~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL----NK-----ELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH----CC-----CCcEEEEECCCcc
Confidence 3799999999999999987653 31 2379999987543
No 325
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=49.92 E-value=20 Score=42.04 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=29.4
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
-.+.+|+|+|||.+|++.|..|.. .|+ ++.++|+.-
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~----~G~-------~v~v~Er~~ 43 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQ----YGV-------RVLVLERWP 43 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH----CCC-------cEEEEecCC
Confidence 456789999999999999998874 686 577878754
No 326
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.75 E-value=21 Score=40.77 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=26.5
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.||.|+|+|.+|+++|++|.. .|. .+..+|++
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~----~G~-------~V~~~D~~ 32 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKA----QGW-------EVVVSDRN 32 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHH----CCC-------EEEEECCC
Confidence 379999999999999999884 785 57777764
No 327
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=49.67 E-value=19 Score=39.89 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=28.2
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
||+++|+|.-|.-+++.|+.. | .++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~----G------vg~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS----G------FRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc----C------CCeEEEECCC
Confidence 689999999999999998876 8 4699999986
No 328
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=49.63 E-value=18 Score=43.84 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=29.4
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhc-CCCccccCCeEEEEcCCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKE-GTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~-G~~~e~~~~ni~m~DskG 58 (848)
.++.+|+|+|||.||+++|-.|. .. |+ ++.++|++.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~La----r~~Gi-------~v~IiE~~~ 66 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLS----AFPDI-------TTRIVERKP 66 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHh----cCCCC-------cEEEEEcCC
Confidence 45789999999999999999887 44 76 578888763
No 329
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=49.61 E-value=19 Score=33.22 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=28.4
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++++-+++++|+|..|..-+++|+ +.|. +|.++...-
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll----~~gA-------~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLL----EAGA-------KVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHC----CCTB-------EEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHH----hCCC-------EEEEECCch
Confidence 467789999999999999999988 4663 788877754
No 330
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=49.51 E-value=24 Score=35.41 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=23.4
Q ss_pred cCCCceEEEeccchHHHHHHHHHHHH
Q psy14377 237 RLSDNTILFQGAGEASLGIADLCVMA 262 (848)
Q Consensus 237 ~l~d~riv~~GAGaAg~gia~ll~~~ 262 (848)
+|++.++||+|+|..|...+++|.++
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ 35 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT 35 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC
Confidence 57899999999999999999988765
No 331
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=49.27 E-value=58 Score=36.25 Aligned_cols=65 Identities=20% Similarity=0.176 Sum_probs=43.5
Q ss_pred CCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccCCCCCCHHH
Q psy14377 9 KTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLAD 88 (848)
Q Consensus 9 gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~~~~~tL~e 88 (848)
+..+.+-+|.|+|-|..|..+|+++. .+|. +|+.+|+.. .+.++ .. .+ . ...+|+|
T Consensus 131 ~~~l~g~tvgIvG~G~IG~~vA~~l~----afG~-------~V~~~~~~~----~~~~~-~~----~~---~-~~~~l~e 186 (312)
T PRK15469 131 EYHREDFTIGILGAGVLGSKVAQSLQ----TWGF-------PLRCWSRSR----KSWPG-VQ----SF---A-GREELSA 186 (312)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHH----HCCC-------EEEEEeCCC----CCCCC-ce----ee---c-ccccHHH
Confidence 45677889999999999999999998 4886 677777621 11110 11 11 1 2357999
Q ss_pred HhcccCCCchh
Q psy14377 89 VVKTVKPSILI 99 (848)
Q Consensus 89 a~~~s~~~v~~ 99 (848)
+++. +|+++
T Consensus 187 ~l~~--aDvvv 195 (312)
T PRK15469 187 FLSQ--TRVLI 195 (312)
T ss_pred HHhc--CCEEE
Confidence 9986 56554
No 332
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=49.18 E-value=21 Score=41.72 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=27.8
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.-|++|+|||.||+++|.-|.. .|. +|+++|+..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~----~g~-------~V~v~e~~~ 176 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNR----AGH-------TVTVFERED 176 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHH----cCC-------eEEEEecCC
Confidence 3599999999999999998873 664 688888653
No 333
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=49.16 E-value=22 Score=41.14 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=27.8
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+-.|||+|||+||+.+|..+. +.|. ++.++|++
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa----~~G~-------~V~lie~~ 36 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAA----DLGL-------ETVCVERY 36 (471)
T ss_pred cceEEEECCCHHHHHHHHHHH----HCCC-------cEEEEecC
Confidence 467999999999999999777 3674 78999975
No 334
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=49.12 E-value=20 Score=40.21 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=26.8
Q ss_pred EEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q psy14377 243 ILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 286 (848)
Q Consensus 243 iv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi 286 (848)
++|+|||.||+.+|..+.++ +.| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~--~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA--RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc--CCC-------CEEEEEcCCccc
Confidence 68999999999999988443 223 579999986433
No 335
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=49.04 E-value=23 Score=38.79 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=27.2
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
.|||+|||.+|++||--|.+ .| .+|.++|+....
T Consensus 2 dvvIIGaGi~G~s~A~~La~----~g-------~~V~l~e~~~~~ 35 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK----HG-------KKTLLLEQFDLP 35 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH----CC-------CeEEEEeccCCC
Confidence 58999999999999987663 56 378999986553
No 336
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=48.84 E-value=21 Score=40.38 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=26.4
Q ss_pred EEEeccchhHHHHHHHHHHHHHhcC-CCccccCCeEEEEcCCCcc
Q psy14377 17 ILFQGAGEASLGIADLCVMAMQKEG-TSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 17 iV~~GAGaA~ia~a~L~~~am~~~G-~~~e~~~~ni~m~DskGvi 60 (848)
|||+|+|.||+++|--+. +.| + +++++++....
T Consensus 2 VvVVG~G~AGl~AA~~aa----~~G~~-------~V~vlEk~~~~ 35 (439)
T TIGR01813 2 VVVVGSGFAGLSAALSAK----KAGAA-------NVVLLEKMPVI 35 (439)
T ss_pred EEEECCCHHHHHHHHHHH----HcCCc-------cEEEEecCCCC
Confidence 799999999999997655 367 4 68888987653
No 337
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=48.80 E-value=22 Score=40.71 Aligned_cols=33 Identities=21% Similarity=0.541 Sum_probs=23.8
Q ss_pred EEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 17 ILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 17 iV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
|||+|+|.||+++|--.. +.|+ +++++++.+.+
T Consensus 2 VVVvGgG~aG~~AAi~AA----r~G~-------~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAA----RAGA-------KVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHH----HTTS--------EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHH----HCCC-------EEEEEECCccC
Confidence 799999999999998655 5785 78999987764
No 338
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.56 E-value=28 Score=38.67 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhhCCcCCCceEEecCcc-hhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchhh
Q psy14377 689 VAVAGLLASLRITKTRLSDNTILFQGAG-EGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRIT 767 (848)
Q Consensus 689 V~LAgllaAlr~t~~~l~d~riv~~GAG-~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~~ 767 (848)
+|-+|++.=++-.+.+++..+++++|.| .- |..+|.+|....++ +.+|. . + | +.+
T Consensus 139 cTp~avi~lL~~~~i~l~Gk~vvVvGrs~~V--G~Pla~lL~~~gAt-Vtv~h-----s-~-------------t--~~l 194 (285)
T PRK14191 139 ATPMGVMRLLKHYHIEIKGKDVVIIGASNIV--GKPLAMLMLNAGAS-VSVCH-----I-L-------------T--KDL 194 (285)
T ss_pred CcHHHHHHHHHHhCCCCCCCEEEEECCCchh--HHHHHHHHHHCCCE-EEEEe-----C-C-------------c--HHH
Confidence 4667777778888889999999999999 67 99999999877643 34342 1 1 1 235
Q ss_pred ccccCCCceEEeecC
Q psy14377 768 KTRLSDNTILFQGSG 782 (848)
Q Consensus 768 ~~~~~~~~~~~~~s~ 782 (848)
++.++.|||.+.-.+
T Consensus 195 ~~~~~~ADIvV~AvG 209 (285)
T PRK14191 195 SFYTQNADIVCVGVG 209 (285)
T ss_pred HHHHHhCCEEEEecC
Confidence 677899999986553
No 339
>PRK05868 hypothetical protein; Validated
Probab=48.50 E-value=23 Score=39.61 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=26.3
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+|+|+|||-||+++|-.|. +.|+ ++.++|++-
T Consensus 3 ~V~IvGgG~aGl~~A~~L~----~~G~-------~v~viE~~~ 34 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLG----RHGY-------SVTMVERHP 34 (372)
T ss_pred eEEEECCCHHHHHHHHHHH----hCCC-------CEEEEcCCC
Confidence 7999999999999998776 4676 578888753
No 340
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=48.50 E-value=22 Score=40.45 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=25.6
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
.|||+|||.||+++|.-+.. .|. ++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~----~G~-------~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQ----LGL-------KVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHh----CCC-------eEEEEec
Confidence 58999999999999997763 673 7899997
No 341
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=48.49 E-value=12 Score=41.82 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=19.5
Q ss_pred ceEEEeccchHHHHHHHHHHHH
Q psy14377 241 NTILFQGAGEASLGIADLCVMA 262 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~ 262 (848)
.+|+|+|||-||+..|..|.++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999988764
No 342
>PRK06153 hypothetical protein; Provisional
Probab=48.25 E-value=16 Score=42.29 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=35.6
Q ss_pred CCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 9 KTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 9 gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
.+++++.||+++|+|.-|-.++++|. +.|+ .+|.++|-.=+
T Consensus 171 q~kL~~~~VaIVG~GG~GS~Va~~LA----R~GV------geI~LVD~D~V 211 (393)
T PRK06153 171 SAKLEGQRIAIIGLGGTGSYILDLVA----KTPV------REIHLFDGDDF 211 (393)
T ss_pred HHHHhhCcEEEEcCCccHHHHHHHHH----HcCC------CEEEEECCCEe
Confidence 35899999999999999999999998 4887 48999998644
No 343
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=48.18 E-value=26 Score=39.49 Aligned_cols=41 Identities=20% Similarity=0.085 Sum_probs=29.5
Q ss_pred EEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCC
Q psy14377 17 ILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPE 66 (848)
Q Consensus 17 iV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d 66 (848)
|+|+|||.||+++|-.|..+ ..| .+|.++|+.-.+..+|+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~--~~g-------~~V~lle~~~~~~~~~tw 42 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA--RPD-------FRIRVIEAGRTIGGNHTW 42 (370)
T ss_pred EEEECccHHHHHHHHHHHhc--CCC-------CeEEEEeCCCCCCCcccc
Confidence 78999999999999766631 114 378899987655555543
No 344
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=48.18 E-value=34 Score=30.32 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=38.0
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEE-cCCCccccCCCCCCCChhhhhhcccCCCCCCHHHHhcc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMV-DSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKT 92 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~-DskGvi~~~R~d~~l~~~k~~~a~~~~~~~tL~ea~~~ 92 (848)
||.|+|+|.-|.+.++-+. +.|.++ .+|+++ ++. ++ +..+.+++|.... ...+..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~----~~g~~~----~~v~~~~~r~-------~~-~~~~~~~~~~~~~-~~~~~~~~~~~ 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLL----ASGIKP----HEVIIVSSRS-------PE-KAAELAKEYGVQA-TADDNEEAAQE 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHH----HTTS-G----GEEEEEEESS-------HH-HHHHHHHHCTTEE-ESEEHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHH----HCCCCc----eeEEeeccCc-------HH-HHHHHHHhhcccc-ccCChHHhhcc
Confidence 7899999999999999777 477644 688864 441 11 1333444443221 11268899885
No 345
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=48.13 E-value=24 Score=39.04 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=28.3
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
...+|||+|+|.||+.+|..+.. .|. ++.++|+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~----~g~-------~v~lie~~~ 51 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLAC----LGY-------EVHVYDKLP 51 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH----CCC-------cEEEEeCCC
Confidence 34589999999999999998873 563 688888753
No 346
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=47.77 E-value=22 Score=40.22 Aligned_cols=78 Identities=5% Similarity=0.092 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecC
Q psy14377 635 DDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQG 714 (848)
Q Consensus 635 ~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~G 714 (848)
++.+++.++.+++.||... + |-. ....|++.-+|.|+-..+ -.+..+-..+. ... ..+.+.|
T Consensus 373 ee~~~~v~~~L~~~~gi~~-----~---p~~-~~v~rw~~a~P~~~~g~~----~~~~~i~~~l~---~~~--~~l~l~G 434 (462)
T TIGR00562 373 NEIINIVLRDLKKVLNINN-----E---PEM-LCVTRWHRAIPQYHVGHD----QRLKEARELLE---SAY--PGVFLTG 434 (462)
T ss_pred HHHHHHHHHHHHHHhCCCC-----C---CcE-EEEeEccccCCCCCCChH----HHHHHHHHHHH---hhC--CCEEEec
Confidence 5777888888888885211 0 111 124566667888876543 11222222221 111 2577777
Q ss_pred cchhhHHHHHHHHHHHhc
Q psy14377 715 AGEGTASVAVAGLLASLR 732 (848)
Q Consensus 715 AG~A~~g~giA~ll~~~~ 732 (848)
..-. |+||.+-+.+..
T Consensus 435 ~~~~--g~~i~~~i~sg~ 450 (462)
T TIGR00562 435 NSFE--GVGIPDCIDQGK 450 (462)
T ss_pred cccC--CCcHHHHHHHHH
Confidence 7666 777777666653
No 347
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.64 E-value=33 Score=38.10 Aligned_cols=74 Identities=18% Similarity=0.181 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhhCCcCCCceEEecCc-chhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchhh
Q psy14377 689 VAVAGLLASLRITKTRLSDNTILFQGA-GEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRIT 767 (848)
Q Consensus 689 V~LAgllaAlr~t~~~l~d~riv~~GA-G~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~~ 767 (848)
+|-+|++.=++-.+.+++..+++|+|. |.- |-.+|.+|...+. .+.+|. .+++ .+
T Consensus 140 cTp~avi~lL~~~~i~l~Gk~v~vIG~S~iv--G~Pla~lL~~~ga-tVtv~~------s~t~---------------~l 195 (284)
T PRK14179 140 CTPAGIMEMFREYNVELEGKHAVVIGRSNIV--GKPMAQLLLDKNA-TVTLTH------SRTR---------------NL 195 (284)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCCcC--cHHHHHHHHHCCC-EEEEEC------CCCC---------------CH
Confidence 456677778888899999999999999 888 9999999998764 333331 1211 46
Q ss_pred ccccCCCceEEeecCCCcc
Q psy14377 768 KTRLSDNTILFQGSGEGTA 786 (848)
Q Consensus 768 ~~~~~~~~~~~~~s~~~~~ 786 (848)
++..+.|||.+..-++...
T Consensus 196 ~~~~~~ADIVI~avg~~~~ 214 (284)
T PRK14179 196 AEVARKADILVVAIGRGHF 214 (284)
T ss_pred HHHHhhCCEEEEecCcccc
Confidence 7778899999877666543
No 348
>PRK06116 glutathione reductase; Validated
Probab=47.54 E-value=25 Score=40.16 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=27.5
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+.-+||+|||.||+++|.-+.. .| .++.++|+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~----~G-------~~V~liE~~ 36 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAM----YG-------AKVALIEAK 36 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHH----CC-------CeEEEEecc
Confidence 3569999999999999998873 67 478999975
No 349
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=47.41 E-value=26 Score=40.37 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=28.5
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+.++||+|||-+|++||-+|.+ .|. ++.++++...
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~----~G~-------~v~vlE~~~~ 35 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAK----RGY-------RVTLLEQHAQ 35 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHH----CCC-------eEEEEecCCC
Confidence 3579999999999999999984 674 6888887643
No 350
>PLN02576 protoporphyrinogen oxidase
Probab=47.29 E-value=25 Score=40.42 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=27.1
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhc-CCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKE-GTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~-G~~~e~~~~ni~m~Dsk 57 (848)
.+.+|+|+|||-||+++|..|.+ . |. +|.++.+.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~----~~g~-------~v~vlEa~ 45 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALAS----KHGV-------NVLVTEAR 45 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH----hcCC-------CEEEEecC
Confidence 45679999999999999998874 4 54 57777765
No 351
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=47.18 E-value=13 Score=40.80 Aligned_cols=35 Identities=9% Similarity=0.189 Sum_probs=26.1
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+|||+|+|.||+..|+.+...+ . ...+|.++|++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~----~----~~~~I~li~~~~ 35 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP----L----PGVRVTLINPSS 35 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC----C----CCCEEEEECCCC
Confidence 5899999999999998775421 1 145899999653
No 352
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=47.13 E-value=28 Score=38.12 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=28.0
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
||+++|||.+|.++|..+.. .|+. .+|+++|..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~----~g~~-----~ei~l~D~~ 34 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN----QGIA-----DELVLIDIN 34 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh----cCCC-----CEEEEEeCC
Confidence 89999999999999998874 6764 489999984
No 353
>PLN02661 Putative thiazole synthesis
Probab=47.13 E-value=25 Score=40.24 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=29.2
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
..|..|+|+|||.||+.||-.+.. ..| .+|.++|+...
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~---~~g-------~kV~viEk~~~ 127 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSK---NPN-------VKVAIIEQSVS 127 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHH---cCC-------CeEEEEecCcc
Confidence 346789999999999999998863 124 37899997544
No 354
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=47.03 E-value=22 Score=40.27 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=25.6
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+++|+|||.||...|..+... |+ ++.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~----G~-------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASA----GI-------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhC----CC-------cEEEEecC
Confidence 689999999999999887654 74 47888875
No 355
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=46.98 E-value=25 Score=39.46 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=28.4
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
||+++|+|.-|.-+++.|+.+ | .++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~----G------vg~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT----G------FGEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh----c------CCeEEEEcCC
Confidence 689999999999999998866 8 4799999986
No 356
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=46.87 E-value=27 Score=35.58 Aligned_cols=30 Identities=33% Similarity=0.453 Sum_probs=24.0
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+|.|+|||..|.+||-++..+ | -++.++|.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~----G-------~~V~l~d~ 30 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA----G-------YEVTLYDR 30 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT----T-------SEEEEE-S
T ss_pred CEEEEcCCHHHHHHHHHHHhC----C-------CcEEEEEC
Confidence 688999999999999998876 7 46888887
No 357
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=46.78 E-value=26 Score=37.04 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=27.5
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
.|+|+|||-+|+.+|..|.+ .| .++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~----~G-------~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR----RG-------HSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH----TT-------SEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH----CC-------CeEEEEeeccc
Confidence 37999999999999998776 46 47999999833
No 358
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.70 E-value=40 Score=37.64 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhhCCcCCCceEEecC-cchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchhh
Q psy14377 689 VAVAGLLASLRITKTRLSDNTILFQG-AGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRIT 767 (848)
Q Consensus 689 V~LAgllaAlr~t~~~l~d~riv~~G-AG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~~ 767 (848)
+|-.|++.=++-.+.+++.++++|+| .|.- |-.+|.+|...+. .+.+|+ .|+. .+
T Consensus 140 cTp~ai~~ll~~~~i~~~Gk~V~viGrs~~m--G~PmA~~L~~~g~-tVtv~~------~rT~---------------~l 195 (296)
T PRK14188 140 CTPLGCMMLLRRVHGDLSGLNAVVIGRSNLV--GKPMAQLLLAANA-TVTIAH------SRTR---------------DL 195 (296)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEEcCCcch--HHHHHHHHHhCCC-EEEEEC------CCCC---------------CH
Confidence 45667777778888899999999999 7888 9999999998764 333332 1222 24
Q ss_pred ccccCCCceEEeecCCCc
Q psy14377 768 KTRLSDNTILFQGSGEGT 785 (848)
Q Consensus 768 ~~~~~~~~~~~~~s~~~~ 785 (848)
++....|||.+..-+...
T Consensus 196 ~e~~~~ADIVIsavg~~~ 213 (296)
T PRK14188 196 PAVCRRADILVAAVGRPE 213 (296)
T ss_pred HHHHhcCCEEEEecCChh
Confidence 667788999987766644
No 359
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=46.63 E-value=22 Score=39.63 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=25.9
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.++|+|||.||+..|..+... |+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~----G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA----GI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC----CC-------cEEEEECC
Confidence 589999999999999876643 74 58899987
No 360
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=46.50 E-value=22 Score=41.11 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=26.3
Q ss_pred EEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 17 ILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 17 iV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
|||+|||-+|++||.+|.+ .|. ++.++.+...
T Consensus 1 vvVIGaG~~GL~aA~~La~----~G~-------~V~VlE~~~~ 32 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAA----AGI-------PVTVVEQRDK 32 (502)
T ss_pred CEEECcCHHHHHHHHHHHh----CCC-------cEEEEECCCC
Confidence 5899999999999998884 673 6888887644
No 361
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=46.30 E-value=34 Score=34.37 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=28.1
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
++++-||+++|+|..|..-++.|+. .|. +|.+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~----~ga-------~V~VIsp 44 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKD----TGA-------FVTVVSP 44 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHh----CCC-------EEEEEcC
Confidence 5677789999999999999998884 563 6777753
No 362
>PRK06847 hypothetical protein; Provisional
Probab=46.30 E-value=26 Score=38.30 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=25.9
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
..+|+|+|||.||+..|..|... |+ ++.++|+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~----g~-------~v~v~E~~ 36 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA----GI-------AVDLVEID 36 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC----CC-------CEEEEecC
Confidence 46899999999999999987653 74 46777764
No 363
>PRK06184 hypothetical protein; Provisional
Probab=46.27 E-value=24 Score=40.85 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=32.3
Q ss_pred CCceEEecCcchhhHHHHHHHHHHHhcccccccccC-ceecCCCCCCch
Q psy14377 706 SDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDN-TILFQGAGEGTA 753 (848)
Q Consensus 706 ~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~-g~i~~~r~~~~~ 753 (848)
++..|+|+|||.+ |+..|-+|...+++-..++.. .....+|..+..
T Consensus 2 ~~~dVlIVGaGpa--Gl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~ 48 (502)
T PRK06184 2 TTTDVLIVGAGPT--GLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQ 48 (502)
T ss_pred CCCcEEEECCCHH--HHHHHHHHHHCCCcEEEEeCCCCCCcCccceeec
Confidence 4568999999999 999999999998854444443 332334444443
No 364
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=46.04 E-value=29 Score=37.22 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=37.5
Q ss_pred cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccc
Q psy14377 675 RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLS 739 (848)
Q Consensus 675 ~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~ 739 (848)
++.-||=|-.| ++.+++-.+......+++++|+|.+ |-+++..+.+.+. ++.+.
T Consensus 93 ~l~g~NTD~~G--------~~~~l~~~~~~~~~k~vliiGaGg~--g~aia~~L~~~g~-~v~v~ 146 (270)
T TIGR00507 93 KLVGYNTDGIG--------LVSDLERLIPLRPNQRVLIIGAGGA--ARAVALPLLKADC-NVIIA 146 (270)
T ss_pred EEEEEcCCHHH--------HHHHHHhcCCCccCCEEEEEcCcHH--HHHHHHHHHHCCC-EEEEE
Confidence 46667777554 4445543344456778999999999 9999999988763 44433
No 365
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.86 E-value=27 Score=40.65 Aligned_cols=35 Identities=9% Similarity=-0.102 Sum_probs=28.6
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+++.||+|+|.|..|.+++++|.. .|. ++++.|.+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~----~g~-------~v~~~d~~ 40 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRA----HLP-------AQALTLFC 40 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHH----cCC-------EEEEEcCC
Confidence 345589999999999999999984 775 57777864
No 366
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=45.83 E-value=37 Score=38.55 Aligned_cols=68 Identities=10% Similarity=0.099 Sum_probs=43.2
Q ss_pred CCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHH-hhh-----ccccchhhccccCCCceEE
Q psy14377 705 LSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVA-IAG-----LLASLRITKTRLSDNTILF 778 (848)
Q Consensus 705 l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~-~~~-----~~~~~r~~~~~~~~~~~~~ 778 (848)
+...+++|+|+|.+ |.++++.+...++ ++.+.|.- ++...... ..| -..+...+.+.+.++||+|
T Consensus 165 l~~~~VlViGaG~v--G~~aa~~a~~lGa-~V~v~d~~------~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 165 VEPGDVTIIGGGVV--GTNAAKMANGLGA-TVTILDIN------IDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCCceEEEEcCCHH--HHHHHHHHHHCCC-eEEEEECC------HHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEE
Confidence 56788999999999 9999999998886 45555421 00001110 011 0122345677788999999
Q ss_pred eec
Q psy14377 779 QGS 781 (848)
Q Consensus 779 ~~s 781 (848)
...
T Consensus 236 ~a~ 238 (370)
T TIGR00518 236 GAV 238 (370)
T ss_pred Ecc
Confidence 864
No 367
>PRK14851 hypothetical protein; Provisional
Probab=45.71 E-value=20 Score=44.06 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=34.0
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
++|++.||+|+|+|..|..+|+.|+.+ | ..+|.++|-+=
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~----G------VG~l~LvD~D~ 77 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT----G------IGRFHIADFDQ 77 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh----C------CCeEEEEcCCE
Confidence 578899999999999999999988766 9 57999999763
No 368
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=45.64 E-value=28 Score=30.12 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=22.3
Q ss_pred EeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 245 FQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 245 ~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
|+|||.+|+..|..|.+. | .+|.++|++
T Consensus 1 IiGaG~sGl~aA~~L~~~----g-------~~v~v~E~~ 28 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA----G-------YRVTVFEKN 28 (68)
T ss_dssp EES-SHHHHHHHHHHHHT----T-------SEEEEEESS
T ss_pred CEeeCHHHHHHHHHHHHC----C-------CcEEEEecC
Confidence 689999999999987764 5 478888875
No 369
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=45.58 E-value=27 Score=40.27 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=26.7
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
--+||+|||.||+++|.-+. +.|. ++.++|+.
T Consensus 3 yDvvVIG~GpaG~~aA~~aa----~~G~-------~V~liE~~ 34 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAA----EHGA-------KALLVEAK 34 (450)
T ss_pred CCEEEECcCHHHHHHHHHHH----HCCC-------cEEEeccc
Confidence 46899999999999999876 4774 78899974
No 370
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=45.57 E-value=29 Score=38.60 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=25.8
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+|+|+|||-+|+++|--+.+ .| .+|.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~----~g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ----AG-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH----CC-------CEEEEEeCC
Confidence 79999999999999987663 56 378998885
No 371
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=45.56 E-value=31 Score=37.68 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=31.8
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIV 61 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~ 61 (848)
...+|||+|||-+|++||-.|.+ .|. +|+++|+..+-.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~----~G~-------~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAE----RGA-------DVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHH----cCC-------EEEEEecCccCC
Confidence 46789999999999999998874 674 799999887754
No 372
>PRK13984 putative oxidoreductase; Provisional
Probab=45.55 E-value=26 Score=41.83 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=27.8
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..-+++|+|||.||+++|..|.+ .|. ++.++|+.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~----~G~-------~v~vie~~ 315 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLAT----MGY-------EVTVYESL 315 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH----CCC-------eEEEEecC
Confidence 35579999999999999999884 675 57888764
No 373
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=45.53 E-value=25 Score=39.99 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=28.0
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+..+||+|||.||+..|..+.+. | .++.++|++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~----g-------~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA----G-------KKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC----C-------CEEEEEecCC
Confidence 45799999999999999887653 6 4699999864
No 374
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=45.47 E-value=25 Score=34.79 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=24.4
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
||.|+|||+.|+++|..+... | .++.|.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~----g-------~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN----G-------HEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC----T-------EEEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHHc----C-------CEEEEEecc
Confidence 689999999999999987764 5 466665553
No 375
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.45 E-value=34 Score=39.45 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=30.5
Q ss_pred cCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 8 TKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 8 ~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.|-.++.-|++|+|+|-+|+++|++|. +.|. ++.++|.+
T Consensus 10 ~~~~~~~~~v~viG~G~~G~~~A~~L~----~~G~-------~V~~~d~~ 48 (480)
T PRK01438 10 WHSDWQGLRVVVAGLGVSGFAAADALL----ELGA-------RVTVVDDG 48 (480)
T ss_pred cccCcCCCEEEEECCCHHHHHHHHHHH----HCCC-------EEEEEeCC
Confidence 344556668999999999999999887 4774 58888763
No 376
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=45.43 E-value=34 Score=35.68 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=28.2
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
++++-||+++|+|..|...++.|.. .| .+|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~----~g-------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLK----YG-------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHH----CC-------CeEEEEcC
Confidence 4667799999999999999998884 56 37888753
No 377
>PRK13243 glyoxylate reductase; Reviewed
Probab=45.39 E-value=56 Score=36.59 Aligned_cols=30 Identities=23% Similarity=0.132 Sum_probs=26.8
Q ss_pred CCcCCCceEEecCcchhhHHHHHHHHHHHhcc
Q psy14377 702 KTRLSDNTILFQGAGEGTASVAVAGLLASLRI 733 (848)
Q Consensus 702 ~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~ 733 (848)
+..|.++++.|+|.|.- |-.+|+.+...+.
T Consensus 145 g~~L~gktvgIiG~G~I--G~~vA~~l~~~G~ 174 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRI--GQAVARRAKGFGM 174 (333)
T ss_pred ccCCCCCEEEEECcCHH--HHHHHHHHHHCCC
Confidence 45789999999999999 9999999987764
No 378
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=45.36 E-value=27 Score=40.03 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=26.6
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
--+||+|+|.||+++|..+.+ .| .++.++|++
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~----~G-------~~V~lie~~ 34 (446)
T TIGR01424 3 YDLFVIGAGSGGVRAARLAAN----HG-------AKVAIAEEP 34 (446)
T ss_pred ccEEEECCCHHHHHHHHHHHh----CC-------CcEEEEecC
Confidence 458999999999999998773 77 478898874
No 379
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=45.35 E-value=29 Score=38.80 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=25.0
Q ss_pred EEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 17 ILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 17 iV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
|||+|+|.||+++|--+. +.|. +++++++...
T Consensus 2 VvVIG~G~AGl~AA~~Aa----e~G~-------~V~lvek~~~ 33 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAA----EAGA-------KVLLVEKGPR 33 (417)
T ss_dssp EEEE-SSHHHHHHHHHHH----HTTT--------EEEEESSSG
T ss_pred EEEECCCHHHHHHHHHHh----hhcC-------eEEEEEeecc
Confidence 799999999999998766 4774 7888888766
No 380
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=45.23 E-value=27 Score=39.14 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=29.3
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
||+++|||+-|..+++.|.. .|+ .+|.++|.+=+
T Consensus 1 kVlIVGaGGlG~EiaKnLal----~Gv------g~ItIvD~D~V 34 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVL----TGF------GEIHIIDLDTI 34 (312)
T ss_pred CEEEECCCHHHHHHHHHHHH----hcC------CeEEEEcCCCc
Confidence 68999999999999998884 787 59999998644
No 381
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=45.22 E-value=27 Score=40.33 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=26.7
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++|++|+|.||+.||..+.+ .| .++.+++++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~----~g-------~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQ----LG-------ADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHh----CC-------CeEEEEEccC
Confidence 68999999999999998874 66 4789998653
No 382
>PRK08163 salicylate hydroxylase; Provisional
Probab=44.92 E-value=27 Score=38.65 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=26.8
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
..+|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~----~g~-------~v~v~Er~ 36 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR----QGI-------KVKLLEQA 36 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh----CCC-------cEEEEeeC
Confidence 4689999999999999987665 474 57888875
No 383
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=44.87 E-value=30 Score=36.13 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=29.0
Q ss_pred cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+|+++++||+|+|..|..-++.|+.. | -+|.+++.
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~----g-------a~VtVvsp 40 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA----G-------AQLRVIAE 40 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC----C-------CEEEEEcC
Confidence 47788999999999999999988865 6 36777765
No 384
>PLN02985 squalene monooxygenase
Probab=44.77 E-value=32 Score=40.73 Aligned_cols=35 Identities=17% Similarity=0.380 Sum_probs=28.4
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
-.+.+|+|+|||.||.++|..|. +.|. +|.++|+.
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa----~~G~-------~V~vlEr~ 75 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALA----KDGR-------RVHVIERD 75 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHH----HcCC-------eEEEEECc
Confidence 34568999999999999998776 3674 68898875
No 385
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=44.72 E-value=30 Score=39.63 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=27.1
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.||||+|+|.||+..|+.|.+. +- .-+|.++|+.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~----~~-----~~~I~li~~~ 35 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRL----DK-----ESDIIIFEKD 35 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhh----CC-----CCCEEEEECC
Confidence 3899999999999999998652 21 2479999886
No 386
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.69 E-value=30 Score=41.86 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=26.6
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+..|||+|+|.||++||--+. +.|+ +++++.+...
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aa----e~G~-------~V~lieK~~~ 42 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEAR----ERGL-------RVAVVCKSLF 42 (626)
T ss_pred eecEEEECcCHHHHHHHHHHH----HCCC-------CEEEEeccCC
Confidence 456999999999999996554 4674 5778777653
No 387
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=44.49 E-value=27 Score=41.04 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=27.8
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++..|||+|+| ||++||--+. +.|+ +++++++...
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa----~~G~-------~V~vlEk~~~ 40 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAA----REGL-------SVALVEATDK 40 (513)
T ss_pred CccCEEEECch-HHHHHHHHHH----HCCC-------cEEEEecCCC
Confidence 37789999999 9999997665 4675 6888897654
No 388
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=44.37 E-value=26 Score=39.82 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=25.9
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
||+|+|||-||+++|..|.+ .|. ++.+++...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~----~G~-------~v~vlE~~~ 32 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLAD----AGH-------TPIVLEARD 32 (453)
T ss_pred CEEEECCCHHHHHHHHHHHH----CCC-------cEEEEecCC
Confidence 68999999999999988874 674 577777653
No 389
>PRK07233 hypothetical protein; Provisional
Probab=44.36 E-value=23 Score=39.20 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=25.3
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
|++|+|||-||+..|..|.+. | .++.++++.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~----G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR----G-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC----C-------CcEEEEEeC
Confidence 689999999999999877654 6 357777776
No 390
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=44.35 E-value=28 Score=40.77 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=29.6
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
||+++|||+.|..+++.|.+ .|+.-. ...+|.++|..=+
T Consensus 1 kVlvVGaGGlGcE~lKnLal----~Gv~~g-~~G~I~IvD~D~I 39 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFAL----MGVGTG-ESGEITVTDMDNI 39 (435)
T ss_pred CEEEECCCHHHHHHHHHHHH----cCCCcC-CCCeEEEECCCCc
Confidence 68999999999999999986 676110 0158999998543
No 391
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=44.13 E-value=23 Score=40.36 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=26.4
Q ss_pred cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
..+..+|||+|+|.||+..|+.|. +. .-+|.++|.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~----~~-------~~~ItlI~~~ 42 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLD----PK-------KYNITVISPR 42 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhC----cC-------CCeEEEEcCC
Confidence 355679999999999999887652 11 2368888764
No 392
>PRK07574 formate dehydrogenase; Provisional
Probab=44.11 E-value=43 Score=38.58 Aligned_cols=67 Identities=16% Similarity=0.140 Sum_probs=45.0
Q ss_pred CCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccCCCCCCHHH
Q psy14377 9 KTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLAD 88 (848)
Q Consensus 9 gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~~~~~tL~e 88 (848)
+..+.+.+|.++|.|..|.++|+.+. .+|. +|+.+|+... ..+ ..+.+-.. ...+|+|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~----~fG~-------~V~~~dr~~~----~~~-----~~~~~g~~--~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLK----PFDV-------KLHYTDRHRL----PEE-----VEQELGLT--YHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHH----hCCC-------EEEEECCCCC----chh-----hHhhcCce--ecCCHHH
Confidence 56688889999999999999999988 3785 6788886431 001 01111111 1247999
Q ss_pred HhcccCCCchh
Q psy14377 89 VVKTVKPSILI 99 (848)
Q Consensus 89 a~~~s~~~v~~ 99 (848)
+++. +|+++
T Consensus 245 ll~~--aDvV~ 253 (385)
T PRK07574 245 LVSV--CDVVT 253 (385)
T ss_pred Hhhc--CCEEE
Confidence 9986 57665
No 393
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=43.97 E-value=35 Score=43.96 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=29.4
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
-..-||+|+|||.||++||.-|.. .|. ++.++|..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~----~Gh-------~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLR----SGH-------NVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHh----CCC-------eEEEEccc
Confidence 356699999999999999998874 675 68999974
No 394
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=43.95 E-value=23 Score=41.18 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=27.5
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..||||+|+|.+|+..++-|.. +.. + -+|.++|+.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~---~~~-~-----~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLAR---KLP-D-----VEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhh---cCC-C-----CcEEEEeCC
Confidence 4689999999999999998875 221 2 379999973
No 395
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=43.95 E-value=30 Score=37.87 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=26.6
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
.|+|+|||-+|++||--|.+ .|. +|.++|+...
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~----~G~-------~V~vle~~~~ 34 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAAR----RGL-------SVTVIERSSR 34 (365)
T ss_pred CEEEECCCHHHHHHHHHHHH----CCC-------eEEEEeCCCC
Confidence 48999999999999987763 563 6899998643
No 396
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=43.93 E-value=80 Score=35.35 Aligned_cols=102 Identities=20% Similarity=0.259 Sum_probs=0.0
Q ss_pred eEEEecc-chHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhhhhccc
Q psy14377 242 TILFQGA-GEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGM 320 (848)
Q Consensus 242 riv~~GA-GaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~~n~g~ 320 (848)
||.|+|| |..|..+|-.+... |+ ...+.|+|.+ +.. ++...+.+...
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~----~~-----~~elvLiDi~------~a~----g~alDL~~~~~------------- 49 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLN----PL-----VSELALYDIV------NTP----GVAADLSHINT------------- 49 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhC----CC-----CcEEEEEecC------ccc----eeehHhHhCCC-------------
Q ss_pred cccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCCCCCCc
Q psy14377 321 AFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGI 400 (848)
Q Consensus 321 ~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~~~~~~ 400 (848)
+.++ -
T Consensus 50 ---------------------------------------------------------------~~~i------------~ 54 (310)
T cd01337 50 ---------------------------------------------------------------PAKV------------T 54 (310)
T ss_pred ---------------------------------------------------------------cceE------------E
Q ss_pred cc-ccccHHHHHcCCCcCccCceeeEEccccccccCCC--------------CCCCHHHHHHHHhcCCCceEEecCCC
Q psy14377 401 PV-GKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIP--------------QVFTADILKDMAAFNKRPIIFALSNP 463 (848)
Q Consensus 401 ~~-g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~--------------g~FTeevvk~Ma~~~~rPIIFaLSNP 463 (848)
.+ |.-++|+.++++ |+.|=| ++.| ...-+++++.+.++++..+|+-.|||
T Consensus 55 ~~~~~~~~y~~~~da--------Divvit-----aG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 55 GYLGPEELKKALKGA--------DVVVIP-----AGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred EecCCCchHHhcCCC--------CEEEEe-----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
No 397
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=43.83 E-value=47 Score=38.27 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 223 ~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.++.+++..|-.|..|++.++.|+|.|..|..+|+.+... |+ ++..+|.
T Consensus 99 ~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~----G~-------~V~~~dp 147 (378)
T PRK15438 99 VFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL----GI-------KTLLCDP 147 (378)
T ss_pred HHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC----CC-------EEEEECC
No 398
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=43.81 E-value=22 Score=41.42 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=34.6
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++|++-+|+++|+|+.|.-+++-|+. .|+ .+|.++|..=+
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL----~GI------g~~tIvD~~~V 55 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVL----PGI------GSFTIVDGSKV 55 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHH----cCC------CeEEEECCCcC
Confidence 46899999999999999999998884 787 49999998654
No 399
>KOG2337|consensus
Probab=43.63 E-value=15 Score=43.95 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=33.1
Q ss_pred CCCceEEecCcchhhHHHHHHHHHHHhcccccccccCce
Q psy14377 705 LSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTI 743 (848)
Q Consensus 705 l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~ 743 (848)
++..|.+++|||+- |+++|+-|+..+++++..-|+|-
T Consensus 338 is~~KcLLLGAGTL--GC~VAR~Ll~WGvRhITFvDn~k 374 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTL--GCNVARNLLGWGVRHITFVDNGK 374 (669)
T ss_pred hhcceeEEecCccc--chHHHHHHHhhccceEEEEecCe
Confidence 56779999999999 99999999999999998877663
No 400
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=43.49 E-value=29 Score=40.52 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=27.5
Q ss_pred cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+.+..+|+|+|||+||+..|..+.+. |+ ++.++++.
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~----G~-------~v~vfE~~ 42 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRRE----GH-------TVVVFERE 42 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhc----CC-------eEEEEecC
Confidence 34558899999999999999987654 74 46666654
No 401
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=43.48 E-value=32 Score=38.21 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=27.6
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
||.++|||..|-++|-++++ .|+- +.+.++|.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~----~~~~-----~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA----LGLF-----SEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh----cCCC-----CEEEEEeC
Confidence 79999999999999998874 5653 58999997
No 402
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=43.48 E-value=31 Score=41.74 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=28.8
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
.+|||+|||-+|.++|--|.+ .|. +|.++|+...+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~----~G~-------~V~VlE~~~~~ 295 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR----RGW-------QVTLYEADEAP 295 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH----CCC-------eEEEEecCCCc
Confidence 579999999999999998774 574 68999986444
No 403
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=43.45 E-value=27 Score=37.51 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=27.7
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
.+..++|+|||.||+..|-.+.. .|+ ++.++|++-
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~----~G~-------~V~liEk~~ 58 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK----AGL-------KVAVFERKL 58 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh----CCC-------eEEEEecCC
Confidence 35779999999999999987654 363 588888764
No 404
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=43.39 E-value=33 Score=39.61 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=29.3
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+.+..+|+|+|+|.||+..|..+... | .++.++|+.
T Consensus 129 ~~~~~~~V~IIG~G~aGl~aA~~l~~~----G-------~~V~vie~~ 165 (449)
T TIGR01316 129 APSTHKKVAVIGAGPAGLACASELAKA----G-------HSVTVFEAL 165 (449)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHC----C-------CcEEEEecC
Confidence 345678999999999999999987653 6 368888864
No 405
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=43.37 E-value=24 Score=34.76 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=28.2
Q ss_pred EEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 244 LFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 244 v~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
.|+|+|.+|+.+++.|+... .....-+|.++|.+..
T Consensus 1 AIIG~G~~G~~~l~~L~~~~------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc------CCCCCCEEEEEcCCCc
Confidence 48999999999999999864 1123568999999755
No 406
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=43.21 E-value=61 Score=34.38 Aligned_cols=46 Identities=24% Similarity=0.358 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 226 GLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 226 gll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
..+.+++..+. ..+.+++|+|+|+.|...+.+... .| .++++.+|+
T Consensus 108 ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~ak~----~G------~~~Vi~~~~ 153 (280)
T TIGR03366 108 TVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAAAA----AG------AARVVAADP 153 (280)
T ss_pred HHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHHHH----cC------CCEEEEECC
Confidence 34455555544 378899999999888776665443 37 456777653
No 407
>PRK09126 hypothetical protein; Provisional
Probab=43.19 E-value=28 Score=38.36 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=26.4
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+..|+|+|||.||+..|-.|... |+ ++.++|+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~----G~-------~v~v~E~~ 35 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS----GL-------KVTLIERQ 35 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC----CC-------cEEEEeCC
Confidence 46799999999999999987654 84 47777774
No 408
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=43.13 E-value=18 Score=33.46 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=39.3
Q ss_pred cCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchhhccccCCCceEEeecCC
Q psy14377 704 RLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSGE 783 (848)
Q Consensus 704 ~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s~~ 783 (848)
+|++.+++++|+|.. |..=+++|++++. ++.+....+ ...+ .-+.-.+|..++.++++++.|.....
T Consensus 4 ~l~~~~vlVvGgG~v--a~~k~~~Ll~~gA-~v~vis~~~---------~~~~-~~i~~~~~~~~~~l~~~~lV~~at~d 70 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPV--AARKARLLLEAGA-KVTVISPEI---------EFSE-GLIQLIRREFEEDLDGADLVFAATDD 70 (103)
T ss_dssp --TT-EEEEEEESHH--HHHHHHHHCCCTB-EEEEEESSE---------HHHH-TSCEEEESS-GGGCTTESEEEE-SS-
T ss_pred EcCCCEEEEECCCHH--HHHHHHHHHhCCC-EEEEECCch---------hhhh-hHHHHHhhhHHHHHhhheEEEecCCC
Confidence 578899999999999 9999999998875 433332111 1001 11122334445668888887755544
Q ss_pred Cc
Q psy14377 784 GT 785 (848)
Q Consensus 784 ~~ 785 (848)
-+
T Consensus 71 ~~ 72 (103)
T PF13241_consen 71 PE 72 (103)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 409
>PRK08401 L-aspartate oxidase; Provisional
Probab=42.99 E-value=30 Score=40.05 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=24.9
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..|||+|||.||++||=-+. +.|. +++++++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aa----e~G~-------~V~liek~ 33 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLA----KKGF-------DVTIIGPG 33 (466)
T ss_pred CeEEEECccHHHHHHHHHHH----HCCC-------eEEEEeCC
Confidence 46899999999999986554 3564 68888875
No 410
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=42.98 E-value=29 Score=40.15 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=27.7
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
...+++|+|+|.||+..|..+... | .++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~----G-------~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA----G-------HKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC----C-------CcEEEEecC
Confidence 457999999999999999887653 6 358888875
No 411
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=42.89 E-value=32 Score=39.34 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=28.7
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIV 61 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~ 61 (848)
+++|+|||-+|+-||+.+. ++| +++.++|++-.|-
T Consensus 3 d~lIVGaGlsG~V~A~~a~----~~g-------k~VLIvekR~HIG 37 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAA----QLG-------KRVLIVEKRNHIG 37 (374)
T ss_pred cEEEECCchhHHHHHHHHH----HcC-------CEEEEEeccccCC
Confidence 6899999999999999555 467 7899999876553
No 412
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=42.87 E-value=39 Score=37.74 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=27.8
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.-||+|+|||..|-++|.++.. .|+. +|.++|..
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~----~gl~------~i~LvDi~ 39 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL----KNLG------DVVLFDIV 39 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh----CCCC------eEEEEeCC
Confidence 3699999999999999998764 5762 49999973
No 413
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=42.84 E-value=29 Score=41.95 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=28.8
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
..-||+|+|+|.||+++|..|.+ .|. ++.++|+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~----~G~-------~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR----AGV-------QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH----cCC-------cEEEEeCCC
Confidence 46789999999999999998884 674 578888654
No 414
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=42.74 E-value=33 Score=39.95 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=25.3
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
+...++|+|||+||+-||--.-+ .| .++.++|.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~----~G-------~~V~lid~ 34 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAK----AG-------RRVLLIDK 34 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhh----cC-------CEEEEEec
Confidence 45678999999999999986653 55 35666665
No 415
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=42.64 E-value=22 Score=37.77 Aligned_cols=38 Identities=32% Similarity=0.436 Sum_probs=32.6
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
++|++-|++++|+|.-|..++..++.+ | .++++++|.+
T Consensus 26 ~~l~~s~vlvvG~GglG~~~~~~la~a----G------vg~l~i~D~d 63 (254)
T COG0476 26 QKLKDSRVLVVGAGGLGSPAAKYLALA----G------VGKLTIVDFD 63 (254)
T ss_pred HHHhhCCEEEEecChhHHHHHHHHHHc----C------CCeEEEEcCC
Confidence 467788999999999999999988876 8 5679998885
No 416
>PTZ00058 glutathione reductase; Provisional
Probab=42.58 E-value=36 Score=40.88 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=28.7
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
-.+-.+||+|||.||.++|.-+. +.| +++.|+|++
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa----~~G-------~~ValIEk~ 80 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAA----RNK-------AKVALVEKD 80 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHH----HcC-------CeEEEEecc
Confidence 34567999999999999999877 467 479999975
No 417
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.36 E-value=53 Score=36.58 Aligned_cols=49 Identities=12% Similarity=0.260 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccch-HHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGE-ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGa-Ag~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
-+|++.-++-.+.+|+..+++|+|+|. .|..+|.+|... | -.++.++++
T Consensus 142 p~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~----g-------atVtv~~s~ 191 (286)
T PRK14175 142 PLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQK----N-------ASVTILHSR 191 (286)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHC----C-------CeEEEEeCC
Confidence 567788888899999999999999988 999999988643 5 357777653
No 418
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=42.27 E-value=29 Score=39.07 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=29.4
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCccc
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIV 287 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~ 287 (848)
+..++|+|||.||...|..+.+. |+ ++.++|++..+-
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~----G~-------~VlvlEk~~~~G 39 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA----GL-------DVLVLEKGSEPG 39 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc----CC-------eEEEEecCCCCC
Confidence 35689999999999999987765 75 477888876554
No 419
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=42.23 E-value=30 Score=41.87 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=28.1
Q ss_pred CCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 238 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 238 l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
-+..+++|+|+|.||+..|..|... |. ++.++|+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~----G~-------~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARN----GV-------AVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC----CC-------eEEEEecC
Confidence 3578999999999999999987754 63 47778764
No 420
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=42.06 E-value=39 Score=37.27 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=27.9
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
+||.|+|+|..|.++|-.+.. .|+- .+|+++|.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~----~g~~-----~ev~l~D~ 33 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLL----RGLA-----SEIVLVDI 33 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHH----cCCC-----CEEEEEEC
Confidence 489999999999999998874 6753 58999996
No 421
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=42.01 E-value=31 Score=41.38 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=28.3
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
.+..|||+|+|.||+++|-... +.|+ +++++++...
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aa----e~G~-------~VivlEk~~~ 45 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAA----ARGL-------DTLVVEKSAH 45 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHH----HCCC-------cEEEEEcCCC
Confidence 3678999999999999998765 4674 6788887654
No 422
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=41.89 E-value=48 Score=38.75 Aligned_cols=76 Identities=9% Similarity=0.065 Sum_probs=45.8
Q ss_pred CcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHh-hhccccchhhccccCCCceEEeec
Q psy14377 703 TRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAI-AGLLASLRITKTRLSDNTILFQGS 781 (848)
Q Consensus 703 ~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~s 781 (848)
..+...|+.++|-+.. ..|+++.|.+.++.-..+. .....+....+.. .-+..+...+++++++.|++||.|
T Consensus 307 ~~l~gkrvai~~~~~~--~~~la~~L~elG~~v~~~~-----~~~~~~~~~~~~~~~i~~~D~~~le~~~~~~dliig~s 379 (455)
T PRK14476 307 FYFGGKRVAIAAEPDL--LLALGSFLAEMGAEIVAAV-----TTTKSPALEDLPAEEVLIGDLEDLEELAEGADLLITNS 379 (455)
T ss_pred HHhcCCEEEEEeCHHH--HHHHHHHHHHCCCEEEEEE-----eCCCcHHHHhCCcCcEEeCCHHHHHHhccCCCEEEECc
Confidence 3466789999987777 9999999998775433211 1111111111111 112345556677777999999999
Q ss_pred CCCc
Q psy14377 782 GEGT 785 (848)
Q Consensus 782 ~~~~ 785 (848)
-+..
T Consensus 380 ~~~~ 383 (455)
T PRK14476 380 HGRQ 383 (455)
T ss_pred hhHH
Confidence 6643
No 423
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=41.88 E-value=30 Score=37.27 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=29.1
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 286 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi 286 (848)
.+..++|+|||.||+..|..+... | .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~----G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKN----G-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHC----C-------CcEEEEecCCCC
Confidence 467899999999999999876543 6 368888887543
No 424
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=41.86 E-value=38 Score=36.77 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=32.4
Q ss_pred CCceEEEeccchhHHHHHHHHHHH---HHhcCCCccccCCeEEEEcCCCc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMA---MQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~a---m~~~G~~~e~~~~ni~m~DskGv 59 (848)
+..||+++|||+-|-.+++.|..+ |...|.+. + -+|.++|..=+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~--g-~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPG--G-LAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCC--C-CEEEEECCCEE
Confidence 578999999999999999988853 22334321 1 28999998755
No 425
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=41.67 E-value=34 Score=41.31 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=26.8
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhc--CCCccccCCeEEEEcCCCc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKE--GTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~--G~~~e~~~~ni~m~DskGv 59 (848)
.+..|||+|+|+||+.+|=-.. +. |+ +++++++...
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aa----e~~~G~-------~V~lieK~~~ 47 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAK----EWAPDL-------KVLIVEKANI 47 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHH----HhCCCC-------eEEEEECCCc
Confidence 4567999999999999985443 34 64 6888887654
No 426
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=41.66 E-value=34 Score=41.60 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=27.0
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
.+.-|||+|+|.||+++|=-+. +.|+ +|+++.+++.+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aa----e~G~-------~VilieK~~~~ 70 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLG----ELGY-------NVKVFCYQDSP 70 (640)
T ss_pred cccCEEEECccHHHHHHHHHHH----HcCC-------cEEEEecCCCC
Confidence 3557999999999999996554 3574 57777665544
No 427
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=41.44 E-value=35 Score=38.97 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=29.9
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC----CccccCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK----GLIVKDRP 65 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk----Gvi~~~R~ 65 (848)
+|+|+|||-||+++|..|.++....|.. .+|.++.+. |.+++.+.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~-----~~V~vlEa~~r~GGr~~T~~~ 51 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNID-----LNLILVEKEEYLGGKIHSVEE 51 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCC-----ccEEEEecCCCccceEEEEee
Confidence 5899999999999999887421001221 267887764 56665554
No 428
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=41.40 E-value=55 Score=34.78 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhh---------CCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCchHHHhhh
Q psy14377 690 AVAGLLASLRIT---------KTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTASVAIAG 759 (848)
Q Consensus 690 ~LAgllaAlr~t---------~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~~~~~~~ 759 (848)
|-.|++.=|+-. +.+++.++++++|-+.- -|--+|.||....+ .+..|| +|+.+.-+.+.+ .+
T Consensus 36 Tp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~i-VGkPla~lL~~~~A-tVti~~~~~~~~~~~~~~~-----~h 108 (197)
T cd01079 36 TPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEV-VGRPLAALLANDGA-RVYSVDINGIQVFTRGESI-----RH 108 (197)
T ss_pred CHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCcc-chHHHHHHHHHCCC-EEEEEecCccccccccccc-----cc
Confidence 444555555544 44899999999999775 69999999988764 455787 887765444432 12
Q ss_pred ccccch----hhccccCCCceEEeecCCCcchhhhhhhhheeeeecccccccceeecccccccchhhHHHHHHHhHhhhc
Q psy14377 760 LLASLR----ITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTILFQGAGEDRNERLFYRLLSEYVVELM 835 (848)
Q Consensus 760 ~~~~~r----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 835 (848)
-+|..+ .+++.++.|||.+..-|+ +. ++|++.-+.+...+.=--. ++| ..+.+.|--
T Consensus 109 s~t~~~~~~~~l~~~~~~ADIVIsAvG~--~~---------~~i~~d~ik~GavVIDVGi-~~d-------vd~~v~~~a 169 (197)
T cd01079 109 EKHHVTDEEAMTLDCLSQSDVVITGVPS--PN---------YKVPTELLKDGAICINFAS-IKN-------FEPSVKEKA 169 (197)
T ss_pred ccccccchhhHHHHHhhhCCEEEEccCC--CC---------CccCHHHcCCCcEEEEcCC-CcC-------ccHhHHhhc
Confidence 223211 266788999999754433 21 2355555555544322111 121 114444443
Q ss_pred ceeecccccc
Q psy14377 836 PIVYTPTVGL 845 (848)
Q Consensus 836 p~~y~p~~~~ 845 (848)
- .|||+||.
T Consensus 170 s-~iTPvVGp 178 (197)
T cd01079 170 S-IYVPSIGK 178 (197)
T ss_pred C-EeCCCcCH
Confidence 3 48999884
No 429
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=41.03 E-value=30 Score=39.48 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=25.2
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.|+|+|||.+|+++|-.|.+.-...|+ ++.++|+.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~-------~v~viE~~ 36 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDL-------KVLLLDAV 36 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCC-------eEEEEeCC
Confidence 589999999999999876520000464 68888874
No 430
>PRK14851 hypothetical protein; Provisional
Probab=40.77 E-value=25 Score=43.32 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=34.9
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++|++.||+|+|+|..|-.+++.|. ..|+ .+|.++|-.=+
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~La----r~GV------G~l~LvD~D~v 78 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMV----RTGI------GRFHIADFDQF 78 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHH----HhCC------CeEEEEcCCEe
Confidence 6899999999999999999999888 4887 48999997644
No 431
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=40.72 E-value=33 Score=39.28 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=27.4
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
..++|+|||+||+..|..+... | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC----C-------CcEEEEeccc
Confidence 5699999999999999987654 6 4789999863
No 432
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=40.72 E-value=31 Score=44.03 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=27.7
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..+|||+|||.||+++|.-+. +.|+ +++++|..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aa----r~G~-------~V~liD~~ 195 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAA----RAGA-------RVILVDEQ 195 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHH----hCCC-------cEEEEecC
Confidence 568999999999999999776 3675 68899985
No 433
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=40.66 E-value=71 Score=35.98 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=47.6
Q ss_pred ccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccCCCCCCH
Q psy14377 7 ITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNL 86 (848)
Q Consensus 7 i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~~~~~tL 86 (848)
..|..+.+.++.|+|.|..|-..|+++. .+|. +++.+|+ +..++. ..+-.-. ...+|
T Consensus 135 ~~g~el~gkTvGIiG~G~IG~~va~~l~----afgm-------~v~~~d~----~~~~~~-------~~~~~~~-~~~~L 191 (324)
T COG0111 135 FRGTELAGKTVGIIGLGRIGRAVAKRLK----AFGM-------KVIGYDP----YSPRER-------AGVDGVV-GVDSL 191 (324)
T ss_pred cccccccCCEEEEECCCHHHHHHHHHHH----hCCC-------eEEEECC----CCchhh-------hccccce-ecccH
Confidence 4566788899999999999999999988 4886 7888887 222221 1111111 34579
Q ss_pred HHHhcccCCCchhh
Q psy14377 87 ADVVKTVKPSILIE 100 (848)
Q Consensus 87 ~ea~~~s~~~v~~g 100 (848)
++.++. +|++.=
T Consensus 192 d~lL~~--sDiv~l 203 (324)
T COG0111 192 DELLAE--ADILTL 203 (324)
T ss_pred HHHHhh--CCEEEE
Confidence 999986 566654
No 434
>PRK06753 hypothetical protein; Provisional
Probab=40.65 E-value=32 Score=37.71 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=24.2
Q ss_pred eEEecCcchhhHHHHHHHHHHHhcccccccc
Q psy14377 709 TILFQGAGEGTASVAVAGLLASLRITKTRLS 739 (848)
Q Consensus 709 riv~~GAG~A~~g~giA~ll~~~~~~~~~~~ 739 (848)
+|+|+|||.| |+..|..|.+.+.+-..++
T Consensus 2 ~V~IvGgG~a--Gl~~A~~L~~~g~~v~v~E 30 (373)
T PRK06753 2 KIAIIGAGIG--GLTAAALLQEQGHEVKVFE 30 (373)
T ss_pred EEEEECCCHH--HHHHHHHHHhCCCcEEEEe
Confidence 6999999999 9999999999886543333
No 435
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=40.47 E-value=60 Score=36.16 Aligned_cols=30 Identities=30% Similarity=0.186 Sum_probs=26.7
Q ss_pred CCcCCCceEEecCcchhhHHHHHHHHHHHhcc
Q psy14377 702 KTRLSDNTILFQGAGEGTASVAVAGLLASLRI 733 (848)
Q Consensus 702 ~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~ 733 (848)
+..++++++.|+|.|.- |-.+|+.+..+++
T Consensus 131 ~~~l~g~tvgIvG~G~I--G~~vA~~l~afG~ 160 (312)
T PRK15469 131 EYHREDFTIGILGAGVL--GSKVAQSLQTWGF 160 (312)
T ss_pred CCCcCCCEEEEECCCHH--HHHHHHHHHHCCC
Confidence 34688999999999999 9999999998775
No 436
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=40.11 E-value=28 Score=38.70 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=26.6
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+.+|+|+|||.||+.+|-.|.+. |. ++.++|+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~----G~-------~v~v~E~~ 50 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS----GL-------RIALIEAQ 50 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC----CC-------EEEEEecC
Confidence 46799999999999999987654 74 47777775
No 437
>PTZ00052 thioredoxin reductase; Provisional
Probab=40.11 E-value=33 Score=40.18 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=26.3
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
--++|+|||.||+++|.-+.. .| .++.++|+
T Consensus 6 yDviVIG~GpaG~~AA~~aa~----~G-------~~V~lie~ 36 (499)
T PTZ00052 6 YDLVVIGGGSGGMAAAKEAAA----HG-------KKVALFDY 36 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHh----CC-------CeEEEEec
Confidence 468999999999999997763 67 48999996
No 438
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=40.10 E-value=37 Score=40.45 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=29.8
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
++..|||+|+|.||+++|-.+.+ .|+ +++++|+...+
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~----~G~-------~v~llEk~~~~ 42 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAH----RGL-------STVVVEKAPHY 42 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHH----CCC-------CEEEEeCCCCC
Confidence 36789999999999999987763 675 68888987543
No 439
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=40.09 E-value=37 Score=40.23 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=27.4
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+..|||+|+|.||+++|--.. +.|+ +++|+++..
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa----~~G~-------~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELA----DAGK-------RVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHH----HCCC-------eEEEEeCCC
Confidence 5678999999999999987655 4674 577877655
No 440
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.08 E-value=37 Score=38.60 Aligned_cols=36 Identities=31% Similarity=0.505 Sum_probs=29.5
Q ss_pred cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+++.+++|.|+|.+|.++|+.+... | .+++++|++
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~----G-------~~V~~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKL----G-------AKVILTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC----C-------CEEEEEeCC
Confidence 36778999999999999999987754 7 468888875
No 441
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=40.02 E-value=49 Score=37.19 Aligned_cols=45 Identities=31% Similarity=0.313 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHh------------------hhCCcCCCceEEecCcchhhHHHHHHHHHHHhccc
Q psy14377 688 SVAVAGLLASLR------------------ITKTRLSDNTILFQGAGEGTASVAVAGLLASLRIT 734 (848)
Q Consensus 688 aV~LAgllaAlr------------------~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~ 734 (848)
=-+++.+|+..| ..+..|.++++-|+|.|.- |..+|+.+...+++
T Consensus 105 E~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~I--G~~va~~l~afgm~ 167 (324)
T COG0111 105 ELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRI--GRAVAKRLKAFGMK 167 (324)
T ss_pred HHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHH--HHHHHHHHHhCCCe
Confidence 346777777777 5677899999999999999 99999999888754
No 442
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=40.00 E-value=33 Score=37.45 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=28.2
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
...++|+|||-+|+.+|-.|.+. | .++.++|+...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~----g-------~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR----G-------LRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC----C-------CeEEEEecccC
Confidence 35699999999999999876653 6 46999998754
No 443
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=39.88 E-value=31 Score=39.21 Aligned_cols=69 Identities=13% Similarity=0.048 Sum_probs=46.5
Q ss_pred CcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchhhccccCCCceEEeecC
Q psy14377 703 TRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSG 782 (848)
Q Consensus 703 ~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s~ 782 (848)
..|++.+|.|+|-|+- |-++|+.|...+++ +. ++..+....+....+|... .+++++++.+||.+-.-.
T Consensus 12 ~~LkgKtVGIIG~GsI--G~amA~nL~d~G~~-Vi------V~~r~~~s~~~A~~~G~~v--~sl~Eaak~ADVV~llLP 80 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQ--GHAQAQNLRDSGVE-VV------VGVRPGKSFEVAKADGFEV--MSVSEAVRTAQVVQMLLP 80 (335)
T ss_pred hhhCcCEEEEEeEcHH--HHHHHHHHHHCcCE-EE------EEECcchhhHHHHHcCCEE--CCHHHHHhcCCEEEEeCC
Confidence 3588999999999999 99999999988753 22 2321111111222335533 378899999998776544
No 444
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=39.61 E-value=37 Score=39.33 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=26.5
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
+..+||+|+|.||+++|--+.. .| .++.++|+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~----~g-------~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQ----LG-------LKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHh----CC-------CeEEEEec
Confidence 4569999999999999997763 56 47899997
No 445
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=39.55 E-value=48 Score=33.79 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=25.0
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
||.|+|||..|.++|-++.. .|. ++.++|..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~----~G~-------~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR----AGY-------EVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH----TTS-------EEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHh----CCC-------cEEEEECC
Confidence 68999999999999999984 675 78999984
No 446
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.50 E-value=17 Score=40.65 Aligned_cols=30 Identities=13% Similarity=0.000 Sum_probs=24.9
Q ss_pred ceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 708 NTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 708 ~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
.||.|+|+|.. |.|||.+++.++. ++.+.|
T Consensus 8 ~~VaVIGaG~M--G~giA~~~a~aG~-~V~l~D 37 (321)
T PRK07066 8 KTFAAIGSGVI--GSGWVARALAHGL-DVVAWD 37 (321)
T ss_pred CEEEEECcCHH--HHHHHHHHHhCCC-eEEEEe
Confidence 57999999999 9999999999874 554444
No 447
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=39.44 E-value=35 Score=37.37 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=27.2
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 286 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi 286 (848)
.|+|+|||.+|+.+|-.|.+ .| .++.++|+....
T Consensus 2 dvvIIGaGi~G~s~A~~La~----~g-------~~V~l~e~~~~~ 35 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK----HG-------KKTLLLEQFDLP 35 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH----CC-------CeEEEEeccCCC
Confidence 58999999999999988764 36 368899987553
No 448
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=39.41 E-value=56 Score=37.75 Aligned_cols=78 Identities=10% Similarity=0.026 Sum_probs=48.2
Q ss_pred hCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchH-HHhhhccccchhhccccCCCceEEe
Q psy14377 701 TKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTAS-VAIAGLLASLRITKTRLSDNTILFQ 779 (848)
Q Consensus 701 t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~ 779 (848)
....+...|+.++|-+.- ..|+++.|.+.++.-..+. .....+.+.. ....-...+...+++++.+.|++||
T Consensus 294 ~~~~l~gkrvai~~~~~~--~~~l~~~L~ElG~~~~~~~-----~~~~~~~~~~~~~~~~~~~D~~~~e~~~~~~dllig 366 (417)
T cd01966 294 GHFYLGGKRVAIALEPDL--LAALSSFLAEMGAEIVAAV-----ATTDSPALEKLPAEEVVVGDLEDLEDLAAEADLLVT 366 (417)
T ss_pred HHHHhCCcEEEEEeCHHH--HHHHHHHHHHCCCEEEEEE-----ECCCCHHHHhCcccceEeCCHHHHHHhcccCCEEEE
Confidence 344567789999998887 8999999998876533211 1111111111 1112234566666667778999999
Q ss_pred ecCCCc
Q psy14377 780 GSGEGT 785 (848)
Q Consensus 780 ~s~~~~ 785 (848)
.|-+-.
T Consensus 367 ~s~~~~ 372 (417)
T cd01966 367 NSHGRQ 372 (417)
T ss_pred cchhHH
Confidence 986644
No 449
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=39.10 E-value=40 Score=39.62 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=28.3
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++..|||+|+|++|.+||.-+.+ .|+ ++.++|+..
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~----rGl-------~V~LvEk~d 39 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAG----RGL-------SVLLCEQDD 39 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHH----CCC-------eEEEEecCC
Confidence 34679999999999999987763 675 688989853
No 450
>PRK07236 hypothetical protein; Provisional
Probab=39.05 E-value=35 Score=37.93 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=27.0
Q ss_pred CCCceEEecCcchhhHHHHHHHHHHHhcccccccc
Q psy14377 705 LSDNTILFQGAGEGTASVAVAGLLASLRITKTRLS 739 (848)
Q Consensus 705 l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~ 739 (848)
.+..+|+|+|||.| |+..|..|.+.+++-..++
T Consensus 4 ~~~~~ViIVGaG~a--Gl~~A~~L~~~G~~v~v~E 36 (386)
T PRK07236 4 MSGPRAVVIGGSLG--GLFAALLLRRAGWDVDVFE 36 (386)
T ss_pred CCCCeEEEECCCHH--HHHHHHHHHhCCCCEEEEe
Confidence 45678999999999 9999999999886543333
No 451
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=39.02 E-value=42 Score=39.90 Aligned_cols=33 Identities=24% Similarity=0.603 Sum_probs=27.8
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+..|||+|+|..|.+||.-|.+ .|+ ++.++|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~----rG~-------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCAL----RGL-------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHH----cCC-------eEEEEECC
Confidence 4679999999999999998774 675 68999984
No 452
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=39.01 E-value=38 Score=39.63 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=28.6
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++..|||+|+|.+|.+||.-+.+ .|+ ++.+++++-
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~----rG~-------~V~LlEk~d 39 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAG----RGL-------KVLLCEKDD 39 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHh----CCC-------cEEEEECCC
Confidence 34679999999999999998873 675 688888763
No 453
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=38.98 E-value=49 Score=36.85 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=28.8
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
..||.++|||..|-++|-++.. .|+. ..|.++|.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~----~~~~-----~el~LiD~ 36 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILA----KGLA-----DELVLVDV 36 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHh----cCCC-----CEEEEEeC
Confidence 4599999999999999998874 5664 58999997
No 454
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=38.90 E-value=33 Score=37.84 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=24.8
Q ss_pred EEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 243 ILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 243 iv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
++|+|||.||+.+|..+.. .|. ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh----CCC-------eEEEEccCC
Confidence 7999999999999977653 363 688888753
No 455
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=38.80 E-value=39 Score=37.74 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=29.8
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
++..|+|+|||.+|+.+|-.|.+. .| .+++.++|+..+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~---~g------~~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE---HG------ITNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh---cC------CCeEEEEEcccc
Confidence 346799999999999999987752 25 347999998754
No 456
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=38.59 E-value=49 Score=32.47 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=27.5
Q ss_pred ceEEEecc-chHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGA-GEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GA-GaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.||.|+|| |..|..+|-+|... ++ -++|.++|.+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~----~l-----~~ei~L~D~~ 35 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ----GL-----ADEIVLIDIN 35 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT----TT-----SSEEEEEESS
T ss_pred CEEEEECCCChHHHHHHHHHHhC----CC-----CCceEEeccC
Confidence 37999999 99999999987764 54 3559998874
No 457
>KOG2250|consensus
Probab=38.55 E-value=48 Score=39.53 Aligned_cols=69 Identities=17% Similarity=0.338 Sum_probs=51.7
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhh-hhhcccCCCCCCHHH
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHK-VHYAKKHAPVKNLAD 88 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k-~~~a~~~~~~~tL~e 88 (848)
+.+++-|++++|-|--|...+++|. +.|. +-|-+-|++|+|+.. +| +++.+ .+++..+..++++++
T Consensus 247 ~~~kgkr~~i~G~Gnv~~~aa~~l~----~~G~------kvvavsD~~G~l~np--~G-id~~eL~~~~~~k~~i~~f~~ 313 (514)
T KOG2250|consen 247 KGIKGKRVVIQGFGNVGGHAAKKLS----EKGA------KVVAVSDSKGVLINP--DG-IDIEELLDLADEKKTIKSFDG 313 (514)
T ss_pred CCcCceEEEEeCCCchHHHHHHHHH----hcCC------EEEEEEcCceeEECC--CC-CCHHHHHHHHHhhcccccccc
Confidence 6699999999999999999999888 4775 468899999999874 43 87776 444544333456665
Q ss_pred Hhc
Q psy14377 89 VVK 91 (848)
Q Consensus 89 a~~ 91 (848)
+-.
T Consensus 314 ~~~ 316 (514)
T KOG2250|consen 314 AKL 316 (514)
T ss_pred ccc
Confidence 544
No 458
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=38.55 E-value=26 Score=41.16 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=70.7
Q ss_pred CCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCch------H--HHhhhcc---ccchhhccccCC
Q psy14377 706 SDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTA------S--VAIAGLL---ASLRITKTRLSD 773 (848)
Q Consensus 706 ~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~------~--~~~~~~~---~~~r~~~~~~~~ 773 (848)
+..||+|+||||. ..+++|...+.....+.. .-++++-..+.-. . ++..|.. +.-=.+++||+|
T Consensus 2 ~~~KI~iIGgGSt----~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~g 77 (442)
T COG1486 2 KKFKIVIIGGGST----YTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEG 77 (442)
T ss_pred CcceEEEECCCcc----ccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcC
Confidence 4568999999998 567777777666666666 4455533333222 1 4455542 112234578899
Q ss_pred CceEEeecCCCcchhhhhhhhheeeeecccccccceeecccccccch--hhHHHH--------HHHhHhhhcc
Q psy14377 774 NTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTILFQGAGEDRNE--RLFYRL--------LSEYVVELMP 836 (848)
Q Consensus 774 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~--~~~~~~--------~~~~~~~~~p 836 (848)
||.-+.-=.-| -+. -|.+-.|+.+|+=++. ||||- -.||-| +.+.++|+-|
T Consensus 78 AdfVi~~~rvG--------~l~-~r~~De~IplkyG~~g---qET~G~GGi~~glRtIpvildi~~~m~~~~P 138 (442)
T COG1486 78 ADFVITQIRVG--------GLE-AREKDERIPLKHGLYG---QETNGPGGIFYGLRTIPVILDIAKDMEKVCP 138 (442)
T ss_pred CCEEEEEEeeC--------Ccc-cchhhhccchhhCccc---cccccccHHHhhcccchHHHHHHHHHHHhCC
Confidence 99766432222 222 6888999998877776 89985 345543 3456666655
No 459
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=38.52 E-value=56 Score=37.93 Aligned_cols=81 Identities=10% Similarity=0.036 Sum_probs=45.4
Q ss_pred HHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHh-hhccccchhhcccc--C
Q psy14377 696 ASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAI-AGLLASLRITKTRL--S 772 (848)
Q Consensus 696 aAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~-~~~~~~~r~~~~~~--~ 772 (848)
.++.-....|...|++++|-+.. ..++++.+.+.++.-..+. ...+++-+..... .-...+...+++++ .
T Consensus 300 ~~l~~~~~~l~Gkrvai~~~~~~--~~~l~~~l~elGm~v~~~~-----~~~~~~~~~~~~~~~~~~~D~~~l~~~i~~~ 372 (432)
T TIGR01285 300 DAMLDTHFFLGGKKVAIAAEPDL--LAAWATFFTSMGAQIVAAV-----TTTGSPLLQKLPVETVVIGDLEDLEDLACAA 372 (432)
T ss_pred HHHHHHHHhhCCCEEEEEcCHHH--HHHHHHHHHHCCCEEEEEE-----eCCCCHHHHhCCcCcEEeCCHHHHHHHHhhc
Confidence 34444445677889999987766 8999999988775433211 1111111111000 11123334445555 5
Q ss_pred CCceEEeecCC
Q psy14377 773 DNTILFQGSGE 783 (848)
Q Consensus 773 ~~~~~~~~s~~ 783 (848)
+.|++||.|-+
T Consensus 373 ~~dliig~s~~ 383 (432)
T TIGR01285 373 GADLLITNSHG 383 (432)
T ss_pred CCCEEEECcch
Confidence 68999999865
No 460
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.48 E-value=40 Score=36.41 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=25.6
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
++|.|+|+|.-|.++|..+..+ | -+++++|+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~----G-------~~V~~~d~ 32 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS----G-------FQTTLVDI 32 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC----C-------CcEEEEeC
Confidence 5799999999999999987754 6 35888776
No 461
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=38.47 E-value=27 Score=39.59 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=24.9
Q ss_pred EEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 18 LFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 18 V~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
||+|||+||++||--+. +.|. ++.++|+..-+
T Consensus 1 vIIGgG~aGl~aAi~aa----~~G~-------~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAA----REGL-------SVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHH----hcCC-------cEEEEecCccc
Confidence 58999999999998665 3563 68888886543
No 462
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=38.46 E-value=47 Score=36.97 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=27.0
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
.++||+|+|.||+..|+.|... + ..-+|.+++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~----~-----~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ----D-----AHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh----C-----cCCCEEEEeCCC
Confidence 4899999999999999987653 2 134788887754
No 463
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=38.46 E-value=37 Score=41.80 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=29.2
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
-+..+|+|+|||-||+++|-.|.+ .|+ ++.++++.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r----~Gi-------~V~V~Er~ 113 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK----KGF-------DVLVFEKD 113 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh----cCC-------eEEEEecc
Confidence 456889999999999999998884 786 57787874
No 464
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=38.43 E-value=28 Score=39.14 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=30.1
Q ss_pred eEEecCcchhhHHHHHHHHHHHhcccccccccCcee
Q psy14377 709 TILFQGAGEGTASVAVAGLLASLRITKTRLSDNTIL 744 (848)
Q Consensus 709 riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i 744 (848)
||+++|+|.- |.-+|+.|+.+++.+..+.|.+.+
T Consensus 1 kVLIvGaGGL--Gs~vA~~La~aGVg~ItlvD~D~V 34 (307)
T cd01486 1 KCLLLGAGTL--GCNVARNLLGWGVRHITFVDSGKV 34 (307)
T ss_pred CEEEECCCHH--HHHHHHHHHHcCCCeEEEECCCEe
Confidence 6899999999 999999999999999987775543
No 465
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=38.39 E-value=45 Score=37.21 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=28.6
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+..|||+|||-+|+++|--|.+ ..|. ++|.++|+..
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~---~~g~------~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAK---EHGI------TNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHH---hcCC------CeEEEEEccc
Confidence 35678999999999999987763 1264 3799999854
No 466
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=38.27 E-value=42 Score=37.44 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=26.4
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.||.|+|||..|.++|.++.. .|+. .+.++|.+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~----~gl~------~i~LvDi~ 39 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVL----KNLG------DVVLFDIV 39 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh----CCCC------eEEEEeCC
Confidence 689999999999999997654 3642 39999873
No 467
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=38.20 E-value=28 Score=41.43 Aligned_cols=30 Identities=27% Similarity=0.257 Sum_probs=25.0
Q ss_pred ceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 708 NTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 708 ~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
+||+|.|||-| |++.|..|.+++. ++.+++
T Consensus 1 ~rVai~GaG~A--gL~~a~~La~~g~-~vt~~e 30 (485)
T COG3349 1 MRVAIAGAGLA--GLAAAYELADAGY-DVTLYE 30 (485)
T ss_pred CeEEEEcccHH--HHHHHHHHHhCCC-ceEEEe
Confidence 58999999999 9999999999985 344443
No 468
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=38.06 E-value=37 Score=38.99 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=27.4
Q ss_pred CCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 238 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 238 l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
-...+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~----~g-------~~V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR----KG-------YDVTIFEAR 172 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh----CC-------CeEEEEccC
Confidence 345799999999999999987654 35 368888864
No 469
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=38.06 E-value=39 Score=39.26 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=26.1
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
..++|+|||.||...|..+.. .|+ ++.++|++
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~----~G~-------~VlllEr~ 71 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAK----GGI-------ETFLIERK 71 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHh----CCC-------cEEEEecC
Confidence 469999999999999987664 484 47888876
No 470
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.99 E-value=48 Score=37.71 Aligned_cols=35 Identities=34% Similarity=0.553 Sum_probs=29.2
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+++-+++|+|+|-+|+++|+.|. +.|. +|+++|++
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~----~~G~-------~V~~~d~~ 37 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLK----KLGA-------KVILTDEK 37 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHH----HCCC-------EEEEEeCC
Confidence 55678899999999999999888 4773 78998874
No 471
>PRK10262 thioredoxin reductase; Provisional
Probab=37.85 E-value=35 Score=36.94 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.4
Q ss_pred CCceEEEeccchHHHHHHHHHHHH
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMA 262 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~ 262 (848)
+..+++|+|+|.||+..|..+...
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~ 28 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARA 28 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHC
Confidence 467899999999999999876653
No 472
>PRK07574 formate dehydrogenase; Provisional
Probab=37.75 E-value=84 Score=36.27 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=26.4
Q ss_pred CCcCCCceEEecCcchhhHHHHHHHHHHHhcc
Q psy14377 702 KTRLSDNTILFQGAGEGTASVAVAGLLASLRI 733 (848)
Q Consensus 702 ~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~ 733 (848)
+..|.++++.|+|.|.- |-.+|+.+..+++
T Consensus 187 ~~~L~gktVGIvG~G~I--G~~vA~~l~~fG~ 216 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRI--GLAVLRRLKPFDV 216 (385)
T ss_pred ceecCCCEEEEECCCHH--HHHHHHHHHhCCC
Confidence 34689999999999999 9999999987764
No 473
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=37.56 E-value=38 Score=39.76 Aligned_cols=37 Identities=16% Similarity=0.314 Sum_probs=28.8
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
||+++|||+.|+-+++.|+.+ |+.-.+ ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc----CCCcCC-CCeEEEECCC
Confidence 689999999999999998876 752111 2789999975
No 474
>PLN02697 lycopene epsilon cyclase
Probab=37.53 E-value=41 Score=40.27 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=25.4
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..|||+|||.||+++|..+.+ .|+ ++.++|..
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak----~Gl-------~V~LIe~~ 140 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAK----LGL-------NVGLIGPD 140 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHh----CCC-------cEEEecCc
Confidence 579999999999999987763 676 56777753
No 475
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.48 E-value=46 Score=38.41 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=29.9
Q ss_pred hCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 234 TKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 234 tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+.+++.++++|+|+|-+|+.+|+.+.. .|. ++.++|.+
T Consensus 10 ~~~~~~~~~v~viG~G~~G~~~A~~L~~----~G~-------~V~~~d~~ 48 (480)
T PRK01438 10 WHSDWQGLRVVVAGLGVSGFAAADALLE----LGA-------RVTVVDDG 48 (480)
T ss_pred cccCcCCCEEEEECCCHHHHHHHHHHHH----CCC-------EEEEEeCC
Confidence 4556778899999999999999887664 473 47777753
No 476
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=37.46 E-value=54 Score=39.30 Aligned_cols=98 Identities=19% Similarity=0.213 Sum_probs=54.8
Q ss_pred cCCchHHHHHHHHHHHHHhhhC-----CcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-Cc----------ee
Q psy14377 681 DDIQGTASVAVAGLLASLRITK-----TRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NT----------IL 744 (848)
Q Consensus 681 DDiQGTaaV~LAgllaAlr~t~-----~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g----------~i 744 (848)
.-|.|-.+|..|+=.-.-..+| ......|++++|+|.+ |+..+..+...+.. +.+.| +. .-
T Consensus 133 a~iAGy~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~i--Gl~Aa~~ak~lGA~-V~v~d~~~~rle~a~~lGa~ 209 (511)
T TIGR00561 133 ANIAGYRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVA--GLAAIGAANSLGAI-VRAFDTRPEVKEQVQSMGAE 209 (511)
T ss_pred HHHHHHHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHH--HHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHcCCe
Confidence 3455666665554333222222 1345689999999999 99999998887754 44333 22 10
Q ss_pred c---CCCCCC----chH--HHhhhccccchhhccccCCCceEEeec
Q psy14377 745 F---QGAGEG----TAS--VAIAGLLASLRITKTRLSDNTILFQGS 781 (848)
Q Consensus 745 ~---~~r~~~----~~~--~~~~~~~~~~r~~~~~~~~~~~~~~~s 781 (848)
+ +.+.+| -+. ....-.....+.+.+.++++||.|+..
T Consensus 210 ~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~Ta 255 (511)
T TIGR00561 210 FLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTA 255 (511)
T ss_pred EEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 0 000000 000 011122334556777889999999877
No 477
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=37.32 E-value=57 Score=37.58 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 687 ASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 687 aaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
|=-+++.+++..|..+..|.+.++.|+|.|.- |-.+|+.+...++ ++..+|
T Consensus 96 AE~v~~~lL~l~r~~g~~l~gktvGIIG~G~I--G~~va~~l~a~G~-~V~~~D 146 (381)
T PRK00257 96 VDYVLGSLLTLAEREGVDLAERTYGVVGAGHV--GGRLVRVLRGLGW-KVLVCD 146 (381)
T ss_pred HHHHHHHHHHHhcccCCCcCcCEEEEECCCHH--HHHHHHHHHHCCC-EEEEEC
Confidence 44578889999998899999999999999999 9999999988765 444455
No 478
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=36.98 E-value=29 Score=44.60 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=0.0
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCC-----CccccCCeEEEEcCC
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGT-----SEQDARDKIWMVDSK 57 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~-----~~e~~~~ni~m~Dsk 57 (848)
++|++.||+++|||+-|.-+++.|.. +|+ . +|.++|-.
T Consensus 415 ~kL~~~kVlvvGaGGlG~e~lknLal----~Gv~~~~~G------~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQNLNIFLVGCGAIGCEMLKNFAL----MGVGTGKKG------MITVTDPD 457 (1008)
T ss_pred HHHhhCcEEEECCChHHHHHHHHHHH----hCCCcCCCC------eEEEECCC
No 479
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=36.93 E-value=74 Score=32.79 Aligned_cols=42 Identities=26% Similarity=0.341 Sum_probs=28.9
Q ss_pred chhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHH
Q psy14377 217 GESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMA 262 (848)
Q Consensus 217 GTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~ 262 (848)
||.=.. +-|++ |.|+..|...+++++|-|--|.|||+.+...
T Consensus 4 G~g~S~-~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~ 45 (162)
T PF00670_consen 4 GTGQSL-VDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL 45 (162)
T ss_dssp HHHHHH-HHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT
T ss_pred ccchhH-HHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC
Confidence 444444 55666 4599999999999999999999999987764
No 480
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=36.85 E-value=47 Score=37.27 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=40.0
Q ss_pred chhhHHHHHHHHHHHHHhCCcCCCceEEEecc-chHHHHHHHHHHH
Q psy14377 217 GESCVNDVAGLLASLRITKTRLSDNTILFQGA-GEASLGIADLCVM 261 (848)
Q Consensus 217 GTA~V~~lAgll~Al~~tg~~l~d~riv~~GA-GaAg~gia~ll~~ 261 (848)
+|+++. .=.++.+..-+|..|++-++-|+|| |..|.+||+.|..
T Consensus 145 ~Tayaa-~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 145 HTAYAA-CRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred cchHHH-HHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 677777 8899999999999999999999999 9999999998764
No 481
>PRK06487 glycerate dehydrogenase; Provisional
Probab=36.83 E-value=99 Score=34.44 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=32.2
Q ss_pred cCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 8 TKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 8 ~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.+..+.+-++.++|.|..|-++|+++. .+|. +|+-+|+.
T Consensus 142 ~~~~l~gktvgIiG~G~IG~~vA~~l~----~fgm-------~V~~~~~~ 180 (317)
T PRK06487 142 PIVELEGKTLGLLGHGELGGAVARLAE----AFGM-------RVLIGQLP 180 (317)
T ss_pred cccccCCCEEEEECCCHHHHHHHHHHh----hCCC-------EEEEECCC
Confidence 345788999999999999999999987 4786 67777764
No 482
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=36.76 E-value=45 Score=36.19 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=30.6
Q ss_pred CCceEEEeccchHHHHHHHHHHHH---HHhcCCChhhhcCcEEEEcCCCc
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMA---MQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~---m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
+..||+++|+|.-|.-+++.|+.. |..-|.+ .--+|.++|.+=+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~---~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHP---GGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCC---CCCEEEEECCCEE
Confidence 467999999999999999998875 1111211 0018899998643
No 483
>PRK08275 putative oxidoreductase; Provisional
Probab=36.54 E-value=47 Score=39.44 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=29.3
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+...+.-|||+|+|.||+.+|--+. +.|.. .+++++++...
T Consensus 5 ~~~~~~DVlVIG~G~AGl~AAi~aa----~~g~g-----~~VilveK~~~ 45 (554)
T PRK08275 5 TQEVETDILVIGGGTAGPMAAIKAK----ERNPA-----LRVLLLEKANV 45 (554)
T ss_pred ceeEecCEEEECcCHHHHHHHHHHH----HhCCC-----CeEEEEeCCCC
Confidence 3345667999999999999996554 23311 37899998765
No 484
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=36.50 E-value=44 Score=38.79 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=28.4
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+.-+++|+|||-+|+++|..|.++ |.+ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~----g~~------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA----GVP------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc----CCC------cEEEEEccC
Confidence 346899999999999999977665 854 377778764
No 485
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=36.42 E-value=51 Score=36.43 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=27.7
Q ss_pred CCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 238 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 238 l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
-..++|+|+|+|.||+..|..+.+. | .++.++|+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~----g-------~~v~lie~~ 50 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACL----G-------YEVHVYDKL 50 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC----C-------CcEEEEeCC
Confidence 3457999999999999999877643 5 468888874
No 486
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=36.23 E-value=29 Score=36.78 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=23.2
Q ss_pred EEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 243 ILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 243 iv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
++|+|+|++|.-+|..|.+. | ..+|.++.+-+
T Consensus 3 ~iIVGsG~~G~v~A~rLs~~----~------~~~VlvlEaG~ 34 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASRLSEA----G------NKKVLVLEAGP 34 (296)
T ss_dssp EEEES-SHHHHHHHHHHTTS----T------TS-EEEEESSB
T ss_pred EEEECcCHHHHHHHHHHhhC----C------CCcEEEEEccc
Confidence 78999999999999987642 4 45788877654
No 487
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=36.17 E-value=40 Score=39.27 Aligned_cols=32 Identities=28% Similarity=0.328 Sum_probs=26.2
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
||+|+|||-||+++|..|.+ .|. +|.++++.-
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~----~G~-------~v~v~E~~~ 32 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVD----AGH-------EVDIYESRS 32 (474)
T ss_pred CEEEECCCHHHHHHHHHHHH----CCC-------cEEEEEecC
Confidence 68999999999999998874 674 688888753
No 488
>PLN02852 ferredoxin-NADP+ reductase
Probab=36.14 E-value=34 Score=40.56 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=32.0
Q ss_pred HhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 233 ITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 233 ~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.....-...||+|+|||.||+..|..|... ..| -+|.++|+.
T Consensus 19 ~~~~~~~~~~VaIVGaGPAGl~AA~~L~~~--~~g-------~~Vtv~E~~ 60 (491)
T PLN02852 19 SSSSTSEPLHVCVVGSGPAGFYTADKLLKA--HDG-------ARVDIIERL 60 (491)
T ss_pred CCCCCCCCCcEEEECccHHHHHHHHHHHhh--CCC-------CeEEEEecC
Confidence 355555678999999999999999988753 124 378888876
No 489
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=36.14 E-value=76 Score=37.78 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 226 GLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 226 gll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.+-..+|.++..|+..+++|+|.|..|.++|..+... |. +++.+|+
T Consensus 240 ~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~----Ga-------~ViV~e~ 285 (476)
T PTZ00075 240 LIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGF----GA-------RVVVTEI 285 (476)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC----CC-------EEEEEeC
Confidence 3345567789999999999999999999999987653 62 4766655
No 490
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=36.01 E-value=38 Score=38.77 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=26.3
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
..++|+|||.||+..|-.+.+ .|+ ++.++|+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~----~G~-------~V~llEr~ 37 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR----EGA-------QVLVIERG 37 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh----CCC-------eEEEEEcC
Confidence 579999999999999988664 485 47888875
No 491
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=35.87 E-value=49 Score=36.32 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=27.0
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
||.|+|+|.+|..+|..+... |+ ..+|+++|++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~----g~-----~~ei~l~D~~ 34 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQ----GI-----ADELVLIDIN 34 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhc----CC-----CCEEEEEeCC
Confidence 799999999999999987643 64 3579999984
No 492
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=35.86 E-value=32 Score=40.95 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=22.3
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCc
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSE 44 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~ 44 (848)
.||+|.|||-||++||.-|.+ .|.+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~----~g~~v 26 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELAD----AGYDV 26 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHh----CCCce
Confidence 489999999999999998884 78653
No 493
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=35.83 E-value=44 Score=38.57 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=27.2
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
...++|+|+|+||+..|..+.+. | +++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~----G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL----G-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC----C-------CeEEEEEcc
Confidence 45799999999999999887654 6 579999974
No 494
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.82 E-value=46 Score=35.93 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=25.6
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.+|.|+|+|.-|.++|..+..+ | .+++++|.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~----G-------~~V~l~d~ 34 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH----G-------FDVTIYDI 34 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc----C-------CeEEEEeC
Confidence 5899999999999999887654 6 36888875
No 495
>PRK12831 putative oxidoreductase; Provisional
Probab=35.77 E-value=45 Score=38.80 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=27.8
Q ss_pred CCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 238 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 238 l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
-...+++|+|+|.||+..|..+... | .++.++|+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~----G-------~~V~v~e~~ 172 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM----G-------YDVTIFEAL 172 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC----C-------CeEEEEecC
Confidence 3568899999999999999987764 6 357788753
No 496
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=35.49 E-value=47 Score=40.94 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=29.2
Q ss_pred cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+-.+.+++|+|||.||+..|..+... | .++.++|+.
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~----G-------~~V~v~e~~ 463 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKR----G-------YDVTVFEAL 463 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC----C-------CeEEEEecC
Confidence 34678999999999999999987754 6 368888873
No 497
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=35.40 E-value=43 Score=38.13 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=27.2
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
...++|+|+|.||+..|..+.+. | .++.++|++
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~----g-------~~V~lie~~ 35 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKA----G-------WRVALIEQS 35 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHC----C-------CeEEEEcCC
Confidence 35799999999999999987654 5 468999975
No 498
>PRK06932 glycerate dehydrogenase; Provisional
Probab=35.40 E-value=1e+02 Score=34.24 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=31.2
Q ss_pred cCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 8 TKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 8 ~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
.+..+.+.++.++|-|..|-.+|+++. .+|. +|+-+|+
T Consensus 141 ~~~~l~gktvgIiG~G~IG~~va~~l~----~fg~-------~V~~~~~ 178 (314)
T PRK06932 141 PITDVRGSTLGVFGKGCLGTEVGRLAQ----ALGM-------KVLYAEH 178 (314)
T ss_pred cccccCCCEEEEECCCHHHHHHHHHHh----cCCC-------EEEEECC
Confidence 345788999999999999999999987 4886 5666664
No 499
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=35.40 E-value=35 Score=37.56 Aligned_cols=42 Identities=17% Similarity=0.296 Sum_probs=34.8
Q ss_pred cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccC
Q psy14377 237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVK 288 (848)
Q Consensus 237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~ 288 (848)
+|++++++++|.|..|--+++.|. +.| ..+|.++|.+-+-..
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALa----RsG------ig~itlID~D~v~vT 68 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALA----RSG------IGRITLIDMDDVCVT 68 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHH----HcC------CCeEEEEeccccccc
Confidence 689999999999999988888655 458 689999999866543
No 500
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=35.37 E-value=45 Score=38.07 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=26.8
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+..+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~----g-------~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL----G-------KKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC----C-------CeEEEEeCC
Confidence 45799999999999999877654 6 468889973
Done!