Query psy14377
Match_columns 848
No_of_seqs 467 out of 2839
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 18:18:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pj3_A NAD-dependent malic enz 100.0 1E-103 5E-108 886.0 15.7 358 308-788 5-381 (564)
2 1gq2_A Malic enzyme; oxidoredu 100.0 3E-103 1E-107 881.0 16.4 357 308-788 3-376 (555)
3 1o0s_A NAD-ME, NAD-dependent m 100.0 2E-102 5E-107 879.7 13.2 358 307-788 38-414 (605)
4 1o0s_A NAD-ME, NAD-dependent m 100.0 3.4E-68 1.2E-72 600.7 10.7 253 174-553 258-513 (605)
5 1gq2_A Malic enzyme; oxidoredu 100.0 8.9E-68 3E-72 594.3 12.9 320 107-553 83-476 (555)
6 1pj3_A NAD-dependent malic enz 100.0 9.4E-68 3.2E-72 595.7 12.8 323 107-553 85-481 (564)
7 3nv9_A Malic enzyme; rossmann 100.0 6.6E-63 2.3E-67 546.4 10.0 237 503-783 53-304 (487)
8 3nv9_A Malic enzyme; rossmann 100.0 9.8E-58 3.3E-62 505.3 5.7 337 69-553 19-393 (487)
9 2a9f_A Putative malic enzyme ( 100.0 2.4E-57 8.4E-62 496.8 6.6 234 503-786 28-271 (398)
10 1vl6_A Malate oxidoreductase; 100.0 1.1E-54 3.8E-59 475.1 7.1 233 503-785 32-275 (388)
11 2a9f_A Putative malic enzyme ( 100.0 3.2E-53 1.1E-57 464.4 7.9 294 106-553 32-355 (398)
12 1vl6_A Malate oxidoreductase; 100.0 4.8E-50 1.6E-54 438.6 9.3 294 106-553 36-359 (388)
13 2dvm_A Malic enzyme, 439AA lon 100.0 4.3E-39 1.5E-43 357.8 7.0 234 503-786 26-278 (439)
14 2dvm_A Malic enzyme, 439AA lon 100.0 1E-33 3.4E-38 314.8 8.1 296 106-554 30-363 (439)
15 3gvp_A Adenosylhomocysteinase 97.3 0.00034 1.2E-08 78.4 7.4 134 629-782 112-284 (435)
16 3h9u_A Adenosylhomocysteinase; 97.1 0.0012 4E-08 74.1 10.1 59 209-282 171-242 (436)
17 3gvp_A Adenosylhomocysteinase 97.1 0.0023 7.8E-08 71.8 12.1 53 215-282 199-251 (435)
18 3h9u_A Adenosylhomocysteinase; 96.8 0.002 6.9E-08 72.3 7.7 92 675-781 172-274 (436)
19 4dio_A NAD(P) transhydrogenase 96.3 0.0014 4.9E-08 72.8 2.9 133 11-159 187-355 (405)
20 4fcc_A Glutamate dehydrogenase 96.0 0.037 1.3E-06 62.4 11.9 118 628-748 140-275 (450)
21 1x13_A NAD(P) transhydrogenase 95.8 0.008 2.7E-07 66.2 5.9 149 542-740 26-202 (401)
22 3k92_A NAD-GDH, NAD-specific g 95.8 0.031 1.1E-06 62.6 10.4 122 629-754 126-265 (424)
23 3ond_A Adenosylhomocysteinase; 95.4 0.019 6.6E-07 65.3 7.0 93 675-782 226-329 (488)
24 3aoe_E Glutamate dehydrogenase 95.4 0.071 2.4E-06 59.6 11.3 120 630-753 124-261 (419)
25 3ef6_A Toluene 1,2-dioxygenase 95.3 0.11 3.9E-06 56.0 12.3 41 16-65 4-44 (410)
26 2bma_A Glutamate dehydrogenase 95.1 0.12 4E-06 58.7 12.0 120 630-753 159-295 (470)
27 3klj_A NAD(FAD)-dependent dehy 95.0 0.057 2E-06 58.4 8.9 42 13-65 8-49 (385)
28 3p2y_A Alanine dehydrogenase/p 94.9 0.013 4.4E-07 64.8 3.6 134 11-162 181-348 (381)
29 3kd9_A Coenzyme A disulfide re 94.6 0.2 7E-06 54.5 12.0 39 13-60 2-40 (449)
30 3n58_A Adenosylhomocysteinase; 94.0 0.34 1.1E-05 54.9 12.3 53 215-282 226-278 (464)
31 2yfq_A Padgh, NAD-GDH, NAD-spe 93.9 0.24 8.1E-06 55.5 10.8 117 630-748 117-257 (421)
32 4dio_A NAD(P) transhydrogenase 93.7 0.12 4.1E-06 57.6 8.1 46 406-462 268-313 (405)
33 3r3j_A Glutamate dehydrogenase 93.7 0.39 1.3E-05 54.4 12.2 120 630-753 146-282 (456)
34 1v9l_A Glutamate dehydrogenase 93.3 0.48 1.6E-05 53.0 12.0 115 631-748 117-250 (421)
35 3aog_A Glutamate dehydrogenase 93.0 0.35 1.2E-05 54.5 10.3 117 630-749 141-276 (440)
36 2tmg_A Protein (glutamate dehy 92.9 0.59 2E-05 52.2 11.8 116 631-748 116-250 (415)
37 3kkj_A Amine oxidase, flavin-c 92.7 0.11 3.8E-06 48.0 4.9 32 15-57 3-34 (336)
38 3jyo_A Quinate/shikimate dehyd 91.6 0.32 1.1E-05 51.2 7.4 54 219-282 106-159 (283)
39 3mw9_A GDH 1, glutamate dehydr 91.4 1.4 4.6E-05 50.5 12.7 121 629-753 136-287 (501)
40 3t4e_A Quinate/shikimate dehyd 91.0 0.38 1.3E-05 51.6 7.3 54 219-282 127-180 (312)
41 3tnl_A Shikimate dehydrogenase 90.9 0.37 1.3E-05 51.7 7.2 53 221-283 135-187 (315)
42 3pwz_A Shikimate dehydrogenase 90.9 0.34 1.1E-05 50.8 6.7 54 219-282 98-152 (272)
43 3o8q_A Shikimate 5-dehydrogena 90.8 0.34 1.2E-05 51.1 6.7 53 220-282 106-158 (281)
44 3fbt_A Chorismate mutase and s 90.8 0.32 1.1E-05 51.4 6.5 53 220-282 102-154 (282)
45 3don_A Shikimate dehydrogenase 90.6 0.26 9E-06 51.9 5.6 54 220-283 97-150 (277)
46 3n58_A Adenosylhomocysteinase; 90.5 0.24 8.1E-06 56.1 5.4 92 675-781 208-310 (464)
47 1bgv_A Glutamate dehydrogenase 90.3 1.3 4.3E-05 50.1 11.0 115 632-748 138-270 (449)
48 3tum_A Shikimate dehydrogenase 89.8 0.56 1.9E-05 49.2 7.3 54 219-282 104-157 (269)
49 3ond_A Adenosylhomocysteinase; 89.6 0.5 1.7E-05 53.9 7.2 59 209-282 225-296 (488)
50 3don_A Shikimate dehydrogenase 89.0 0.3 1E-05 51.5 4.5 94 675-784 93-186 (277)
51 2egg_A AROE, shikimate 5-dehyd 88.7 0.63 2.2E-05 49.0 6.8 50 223-282 123-173 (297)
52 2hk9_A Shikimate dehydrogenase 88.2 0.85 2.9E-05 47.2 7.2 50 223-283 112-161 (275)
53 3k92_A NAD-GDH, NAD-specific g 87.3 1 3.6E-05 50.4 7.7 62 218-290 200-261 (424)
54 1nyt_A Shikimate 5-dehydrogena 87.0 1.1 3.7E-05 46.2 7.2 50 222-282 101-150 (271)
55 2jae_A L-amino acid oxidase; o 86.1 0.87 3E-05 49.6 6.2 44 5-59 2-45 (489)
56 1p77_A Shikimate 5-dehydrogena 86.0 0.93 3.2E-05 46.8 6.1 49 223-282 102-150 (272)
57 2d5c_A AROE, shikimate 5-dehyd 85.9 1.2 4.2E-05 45.3 6.9 47 224-282 101-147 (263)
58 3d4o_A Dipicolinate synthase s 85.8 1.2 4E-05 46.5 6.7 110 665-783 106-223 (293)
59 3p2o_A Bifunctional protein fo 85.3 1.3 4.4E-05 47.3 6.8 71 688-782 141-212 (285)
60 1nvt_A Shikimate 5'-dehydrogen 84.8 0.81 2.8E-05 47.5 4.9 48 223-282 111-158 (287)
61 3l07_A Bifunctional protein fo 84.3 1.5 5.1E-05 46.8 6.8 70 689-782 143-213 (285)
62 3vrd_B FCCB subunit, flavocyto 84.0 0.89 3.1E-05 48.2 4.9 34 16-58 4-37 (401)
63 3kkj_A Amine oxidase, flavin-c 83.8 0.99 3.4E-05 41.5 4.5 31 242-283 4-34 (336)
64 4a9w_A Monooxygenase; baeyer-v 83.5 0.9 3.1E-05 46.2 4.5 35 13-58 2-36 (357)
65 3u62_A Shikimate dehydrogenase 83.4 1.2 4E-05 46.2 5.4 52 218-282 89-140 (253)
66 1a4i_A Methylenetetrahydrofola 83.4 1.7 5.7E-05 46.8 6.6 72 688-783 146-218 (301)
67 4hb9_A Similarities with proba 83.2 1.2 3.9E-05 46.5 5.3 32 15-57 2-33 (412)
68 3fbt_A Chorismate mutase and s 82.8 1.2 4E-05 47.1 5.2 56 675-740 98-153 (282)
69 2hk9_A Shikimate dehydrogenase 82.8 0.93 3.2E-05 46.8 4.4 84 692-785 114-198 (275)
70 3d1c_A Flavin-containing putat 82.5 1.2 3.9E-05 46.2 4.9 36 13-58 3-38 (369)
71 3pwz_A Shikimate dehydrogenase 81.8 1.4 4.7E-05 46.2 5.2 48 691-740 103-151 (272)
72 1npy_A Hypothetical shikimate 81.7 2 6.9E-05 44.9 6.4 52 220-282 100-151 (271)
73 4a26_A Putative C-1-tetrahydro 81.6 1.8 6.3E-05 46.5 6.2 72 688-783 146-220 (300)
74 3o8q_A Shikimate 5-dehydrogena 81.5 1.3 4.6E-05 46.5 5.0 86 691-785 110-199 (281)
75 3f8d_A Thioredoxin reductase ( 81.4 1.6 5.4E-05 43.8 5.4 33 14-57 15-47 (323)
76 3h8v_A Ubiquitin-like modifier 81.4 1.4 4.9E-05 46.8 5.2 39 236-284 32-70 (292)
77 1gtm_A Glutamate dehydrogenase 81.4 6.4 0.00022 43.9 10.6 113 631-746 116-251 (419)
78 3t4e_A Quinate/shikimate dehyd 81.1 1.5 5E-05 47.1 5.2 56 675-740 124-179 (312)
79 3tnl_A Shikimate dehydrogenase 81.0 1.5 5.3E-05 46.9 5.4 56 675-740 130-185 (315)
80 3jyo_A Quinate/shikimate dehyd 80.9 1.6 5.6E-05 45.8 5.4 85 692-785 112-206 (283)
81 3fbs_A Oxidoreductase; structu 80.4 1.6 5.3E-05 43.4 4.9 32 15-57 3-34 (297)
82 1lu9_A Methylene tetrahydromet 80.4 3.7 0.00013 42.3 7.8 58 214-282 92-151 (287)
83 1edz_A 5,10-methylenetetrahydr 80.3 1.6 5.4E-05 47.2 5.2 120 701-845 171-297 (320)
84 1l7d_A Nicotinamide nucleotide 80.1 3 0.0001 45.2 7.3 45 693-740 148-202 (384)
85 3lzw_A Ferredoxin--NADP reduct 79.7 1.7 5.8E-05 43.9 4.9 34 14-58 7-40 (332)
86 3ngx_A Bifunctional protein fo 79.6 1.8 6.3E-05 46.0 5.3 70 688-783 133-203 (276)
87 3rui_A Ubiquitin-like modifier 79.4 1.1 3.9E-05 48.7 3.7 38 237-284 31-68 (340)
88 3alj_A 2-methyl-3-hydroxypyrid 79.4 1.9 6.4E-05 45.5 5.3 39 10-59 7-45 (379)
89 3lxd_A FAD-dependent pyridine 79.3 1.8 6.1E-05 46.5 5.2 44 13-65 8-51 (415)
90 3r3j_A Glutamate dehydrogenase 78.8 3.2 0.00011 47.0 7.2 57 224-290 223-279 (456)
91 4a5l_A Thioredoxin reductase; 78.8 1.7 5.9E-05 43.8 4.6 31 16-57 6-36 (314)
92 3fg2_P Putative rubredoxin red 78.5 2.1 7.3E-05 45.8 5.5 42 15-65 2-43 (404)
93 4a5o_A Bifunctional protein fo 78.2 2.7 9.2E-05 44.9 6.1 71 688-782 142-213 (286)
94 3rp8_A Flavoprotein monooxygen 78.2 2.1 7.2E-05 45.5 5.3 38 10-58 19-56 (407)
95 2xdo_A TETX2 protein; tetracyc 78.1 2.2 7.6E-05 45.3 5.5 37 12-59 24-60 (398)
96 3tum_A Shikimate dehydrogenase 78.1 2.2 7.4E-05 44.8 5.3 93 675-784 101-198 (269)
97 2zbw_A Thioredoxin reductase; 78.1 2 6.8E-05 43.9 4.9 34 14-58 5-38 (335)
98 3cgv_A Geranylgeranyl reductas 78.0 1.6 5.5E-05 45.5 4.3 37 12-59 2-38 (397)
99 3c96_A Flavin-containing monoo 77.8 2.3 7.7E-05 45.4 5.4 37 13-59 3-39 (410)
100 3vrd_B FCCB subunit, flavocyto 77.7 2.3 7.8E-05 45.1 5.4 35 240-283 2-36 (401)
101 1jw9_B Molybdopterin biosynthe 77.4 1.5 5E-05 45.0 3.7 38 237-284 28-65 (249)
102 2egg_A AROE, shikimate 5-dehyd 77.3 2.2 7.6E-05 44.8 5.1 87 692-786 125-217 (297)
103 3p2y_A Alanine dehydrogenase/p 77.2 3 0.0001 46.1 6.3 33 705-740 182-214 (381)
104 4eqs_A Coenzyme A disulfide re 77.0 1.9 6.4E-05 47.3 4.6 34 16-58 2-35 (437)
105 2gcg_A Glyoxylate reductase/hy 76.9 4 0.00014 43.5 7.0 57 675-733 99-179 (330)
106 3k7m_X 6-hydroxy-L-nicotine ox 76.8 2.3 8E-05 45.2 5.2 34 15-59 2-35 (431)
107 3ab1_A Ferredoxin--NADP reduct 76.7 2.4 8.2E-05 44.0 5.1 35 13-58 13-47 (360)
108 3oz2_A Digeranylgeranylglycero 76.6 1.9 6.4E-05 44.4 4.3 34 13-57 3-36 (397)
109 1rsg_A FMS1 protein; FAD bindi 76.6 2 6.8E-05 47.6 4.7 37 12-58 6-42 (516)
110 3iwa_A FAD-dependent pyridine 76.5 1.9 6.4E-05 47.2 4.5 39 14-61 3-41 (472)
111 2vou_A 2,6-dihydroxypyridine h 76.5 2.8 9.5E-05 44.5 5.6 37 12-59 3-39 (397)
112 3hyw_A Sulfide-quinone reducta 76.4 2.2 7.6E-05 46.3 5.0 34 16-58 4-37 (430)
113 2gv8_A Monooxygenase; FMO, FAD 76.4 2.8 9.6E-05 45.5 5.7 37 13-58 5-41 (447)
114 3nix_A Flavoprotein/dehydrogen 76.0 2.2 7.5E-05 45.1 4.7 36 13-59 4-39 (421)
115 3dme_A Conserved exported prot 76.0 2.6 9E-05 43.1 5.1 33 14-57 4-36 (369)
116 3itj_A Thioredoxin reductase 1 75.8 2 7E-05 43.4 4.2 33 14-57 22-54 (338)
117 3cty_A Thioredoxin reductase; 75.3 2.4 8.4E-05 43.1 4.7 33 14-57 16-48 (319)
118 1zud_1 Adenylyltransferase THI 75.3 1.5 5.1E-05 45.1 3.0 37 237-283 25-61 (251)
119 3ka7_A Oxidoreductase; structu 75.2 2.9 9.9E-05 44.3 5.4 33 16-59 2-34 (425)
120 1nyt_A Shikimate 5-dehydrogena 75.0 2.9 9.9E-05 43.0 5.1 47 691-740 103-149 (271)
121 2q7v_A Thioredoxin reductase; 74.8 2.8 9.4E-05 42.8 4.9 33 14-57 8-40 (325)
122 1lu9_A Methylene tetrahydromet 74.8 9.5 0.00032 39.2 9.0 82 655-740 62-150 (287)
123 2gqw_A Ferredoxin reductase; f 74.7 2.9 9.8E-05 45.1 5.2 39 14-61 7-45 (408)
124 2cul_A Glucose-inhibited divis 74.4 3 0.0001 41.3 4.9 34 13-57 2-35 (232)
125 3h8v_A Ubiquitin-like modifier 74.4 2.8 9.7E-05 44.6 5.0 40 10-59 32-71 (292)
126 1p77_A Shikimate 5-dehydrogena 74.3 2.2 7.5E-05 44.0 4.1 47 691-740 103-149 (272)
127 2ywl_A Thioredoxin reductase r 74.2 3.2 0.00011 38.9 4.8 33 15-58 2-34 (180)
128 2xve_A Flavin-containing monoo 74.2 3.2 0.00011 45.8 5.6 39 15-58 3-41 (464)
129 3h5n_A MCCB protein; ubiquitin 73.7 2 6.8E-05 46.5 3.7 38 236-283 114-151 (353)
130 1trb_A Thioredoxin reductase; 73.7 2.1 7.2E-05 43.3 3.6 34 13-57 4-37 (320)
131 2a8x_A Dihydrolipoyl dehydroge 73.6 2.5 8.7E-05 46.1 4.5 33 14-57 3-35 (464)
132 2c2x_A Methylenetetrahydrofola 73.4 4.1 0.00014 43.5 5.9 72 689-783 140-213 (281)
133 1b0a_A Protein (fold bifunctio 73.4 3.5 0.00012 44.1 5.3 71 688-782 140-211 (288)
134 1fl2_A Alkyl hydroperoxide red 73.4 3.1 0.00011 41.9 4.8 32 15-57 2-33 (310)
135 2v3a_A Rubredoxin reductase; a 73.3 3 0.0001 44.2 4.9 35 14-57 4-38 (384)
136 3urh_A Dihydrolipoyl dehydroge 73.0 3.1 0.0001 45.9 5.0 37 11-58 22-58 (491)
137 1ryi_A Glycine oxidase; flavop 73.0 3.3 0.00011 43.1 5.0 34 14-58 17-50 (382)
138 3aog_A Glutamate dehydrogenase 73.0 6.5 0.00022 44.3 7.7 57 224-290 219-275 (440)
139 1zud_1 Adenylyltransferase THI 73.0 2.1 7E-05 44.0 3.4 40 10-59 24-63 (251)
140 2d5c_A AROE, shikimate 5-dehyd 73.0 3.5 0.00012 42.0 5.1 81 692-785 102-183 (263)
141 3h8l_A NADH oxidase; membrane 73.0 2.8 9.6E-05 44.7 4.6 37 16-60 3-39 (409)
142 4fcc_A Glutamate dehydrogenase 72.9 5.7 0.00019 44.9 7.2 62 218-290 214-275 (450)
143 2bi7_A UDP-galactopyranose mut 72.9 3.7 0.00013 44.2 5.5 35 13-58 2-36 (384)
144 3r9u_A Thioredoxin reductase; 72.8 2.6 8.7E-05 42.2 4.0 32 14-56 4-36 (315)
145 2q0l_A TRXR, thioredoxin reduc 72.8 3.3 0.00011 41.8 4.8 33 15-57 2-34 (311)
146 1zk7_A HGII, reductase, mercur 72.7 3.5 0.00012 45.0 5.4 33 14-57 4-36 (467)
147 2x3n_A Probable FAD-dependent 72.6 3.1 0.00011 43.9 4.8 35 14-59 6-40 (399)
148 4gcm_A TRXR, thioredoxin reduc 72.4 3.2 0.00011 42.1 4.7 33 14-57 6-38 (312)
149 3v76_A Flavoprotein; structura 72.4 3 0.0001 45.7 4.8 35 13-58 26-60 (417)
150 4fk1_A Putative thioredoxin re 72.4 3.4 0.00012 42.1 4.8 35 12-57 4-38 (304)
151 3ics_A Coenzyme A-disulfide re 72.3 3.3 0.00011 46.7 5.2 40 12-60 34-73 (588)
152 3phh_A Shikimate dehydrogenase 72.2 3.7 0.00012 43.2 5.1 49 219-282 101-149 (269)
153 1s3e_A Amine oxidase [flavin-c 72.2 3.4 0.00012 45.6 5.2 36 14-60 4-39 (520)
154 1yvv_A Amine oxidase, flavin-c 72.1 3.3 0.00011 42.1 4.7 32 15-57 3-34 (336)
155 3rui_A Ubiquitin-like modifier 72.1 2.7 9.1E-05 45.8 4.2 40 10-59 30-69 (340)
156 3aoe_E Glutamate dehydrogenase 72.1 6.1 0.00021 44.2 7.2 56 224-290 202-258 (419)
157 2qae_A Lipoamide, dihydrolipoy 72.0 3.4 0.00012 45.1 5.1 34 14-58 2-35 (468)
158 2r9z_A Glutathione amide reduc 71.7 3.5 0.00012 45.3 5.1 33 14-57 4-36 (463)
159 3nrn_A Uncharacterized protein 71.6 4 0.00014 43.5 5.4 33 16-59 2-34 (421)
160 2oln_A NIKD protein; flavoprot 71.6 3.7 0.00013 43.2 5.1 36 14-60 4-39 (397)
161 1jw9_B Molybdopterin biosynthe 71.6 2 6.9E-05 43.9 3.0 40 10-59 27-66 (249)
162 3qj4_A Renalase; FAD/NAD(P)-bi 71.6 3.1 0.00011 43.1 4.4 31 16-57 3-36 (342)
163 2yg5_A Putrescine oxidase; oxi 71.4 3.2 0.00011 44.5 4.6 36 13-59 4-39 (453)
164 1y8q_A Ubiquitin-like 1 activa 71.4 2.5 8.6E-05 45.6 3.8 38 236-283 32-69 (346)
165 1y56_B Sarcosine oxidase; dehy 71.3 3.7 0.00013 42.8 4.9 34 14-58 5-38 (382)
166 2eq6_A Pyruvate dehydrogenase 71.1 3.1 0.00011 45.6 4.5 36 12-58 4-39 (464)
167 3uox_A Otemo; baeyer-villiger 71.1 4.1 0.00014 46.3 5.6 36 12-58 7-42 (545)
168 2hqm_A GR, grase, glutathione 71.1 3.4 0.00011 45.6 4.8 34 13-57 10-43 (479)
169 3ntd_A FAD-dependent pyridine 71.0 3.4 0.00012 46.1 4.8 36 16-60 3-38 (565)
170 1q1r_A Putidaredoxin reductase 71.0 4.5 0.00015 44.0 5.7 38 14-60 4-41 (431)
171 1vdc_A NTR, NADPH dependent th 71.0 3.1 0.00011 42.4 4.2 33 13-56 7-39 (333)
172 2vvm_A Monoamine oxidase N; FA 70.9 4.1 0.00014 44.4 5.4 33 15-58 40-72 (495)
173 3i3l_A Alkylhalidase CMLS; fla 70.6 4.2 0.00014 46.8 5.6 38 11-59 20-57 (591)
174 3oc4_A Oxidoreductase, pyridin 70.6 3.5 0.00012 45.0 4.7 37 15-60 3-39 (452)
175 1l7d_A Nicotinamide nucleotide 70.6 2.9 9.9E-05 45.3 4.1 37 11-58 169-205 (384)
176 2b9w_A Putative aminooxidase; 70.5 4.2 0.00014 43.2 5.3 36 13-58 5-40 (424)
177 2dbq_A Glyoxylate reductase; D 70.3 9 0.00031 40.9 7.8 30 702-733 145-174 (334)
178 2gf3_A MSOX, monomeric sarcosi 70.3 4.1 0.00014 42.4 5.0 35 14-59 3-37 (389)
179 4gsl_A Ubiquitin-like modifier 70.3 2.5 8.7E-05 49.5 3.7 38 237-284 323-360 (615)
180 2yqu_A 2-oxoglutarate dehydrog 70.1 3.9 0.00013 44.5 5.0 33 15-58 2-34 (455)
181 3vh1_A Ubiquitin-like modifier 70.0 2.3 7.7E-05 49.7 3.2 38 236-283 323-360 (598)
182 1ges_A Glutathione reductase; 69.9 3.6 0.00012 45.0 4.7 33 14-57 4-36 (450)
183 2gag_B Heterotetrameric sarcos 69.9 3.5 0.00012 43.1 4.4 36 14-58 21-56 (405)
184 1dxl_A Dihydrolipoamide dehydr 69.9 3.6 0.00012 44.8 4.7 34 14-58 6-39 (470)
185 2a87_A TRXR, TR, thioredoxin r 69.9 3.7 0.00013 42.3 4.5 34 13-57 13-46 (335)
186 1k0i_A P-hydroxybenzoate hydro 69.8 3.6 0.00012 43.3 4.5 33 15-58 3-35 (394)
187 2gqf_A Hypothetical protein HI 69.8 3.1 0.00011 45.2 4.1 35 13-58 3-37 (401)
188 2uzz_A N-methyl-L-tryptophan o 69.6 4 0.00014 42.3 4.7 35 14-59 2-36 (372)
189 1m6i_A Programmed cell death p 69.5 4.6 0.00016 44.8 5.5 43 13-64 10-52 (493)
190 1x13_A NAD(P) transhydrogenase 69.4 4.2 0.00014 44.7 5.0 38 11-59 169-206 (401)
191 1rp0_A ARA6, thiazole biosynth 68.9 4.2 0.00014 41.6 4.6 35 13-58 38-73 (284)
192 3s5w_A L-ornithine 5-monooxyge 68.7 2.8 9.6E-05 45.3 3.5 40 14-59 30-69 (463)
193 3d1c_A Flavin-containing putat 68.6 4.1 0.00014 42.0 4.5 35 240-284 4-38 (369)
194 1w4x_A Phenylacetone monooxyge 68.5 4.8 0.00016 45.2 5.4 36 12-58 14-49 (542)
195 4gde_A UDP-galactopyranose mut 68.4 4.5 0.00015 43.9 5.0 34 14-57 10-43 (513)
196 4dgk_A Phytoene dehydrogenase; 68.3 3.7 0.00013 44.6 4.3 32 16-58 3-34 (501)
197 3d4o_A Dipicolinate synthase s 68.3 9.5 0.00032 39.6 7.2 42 230-282 145-186 (293)
198 1ebd_A E3BD, dihydrolipoamide 68.3 3.6 0.00012 44.7 4.3 33 14-57 3-35 (455)
199 1mo9_A ORF3; nucleotide bindin 68.1 4.4 0.00015 45.3 5.0 35 13-58 42-76 (523)
200 1nvt_A Shikimate 5'-dehydrogen 68.0 3.1 0.00011 43.1 3.5 86 690-786 111-206 (287)
201 1c0p_A D-amino acid oxidase; a 67.9 5.9 0.0002 41.2 5.6 34 14-58 6-39 (363)
202 3fpz_A Thiazole biosynthetic e 67.8 4 0.00014 42.3 4.3 36 13-57 64-99 (326)
203 3dje_A Fructosyl amine: oxygen 67.8 5 0.00017 42.9 5.1 37 14-60 6-42 (438)
204 1zmd_A Dihydrolipoyl dehydroge 67.8 4.2 0.00014 44.5 4.7 34 14-58 6-39 (474)
205 1bgv_A Glutamate dehydrogenase 67.6 9.4 0.00032 43.1 7.4 57 224-290 214-270 (449)
206 3nks_A Protoporphyrinogen oxid 67.5 5.1 0.00017 43.2 5.2 35 15-58 3-37 (477)
207 3u62_A Shikimate dehydrogenase 67.5 4 0.00014 42.2 4.2 79 693-782 97-175 (253)
208 2e1m_A L-glutamate oxidase; L- 67.5 5.4 0.00018 43.6 5.4 34 13-57 43-76 (376)
209 4ap3_A Steroid monooxygenase; 67.5 4.7 0.00016 45.8 5.1 39 236-285 187-225 (549)
210 1onf_A GR, grase, glutathione 67.4 4.5 0.00015 44.9 4.8 33 15-58 3-35 (500)
211 4g6h_A Rotenone-insensitive NA 67.4 3 0.0001 46.8 3.5 44 241-284 218-264 (502)
212 3h28_A Sulfide-quinone reducta 67.4 4.8 0.00016 43.4 5.0 36 15-59 3-38 (430)
213 2qa1_A PGAE, polyketide oxygen 67.3 4.9 0.00017 44.9 5.1 39 10-59 7-45 (500)
214 3c4a_A Probable tryptophan hyd 67.3 4.7 0.00016 42.6 4.7 33 16-59 2-36 (381)
215 2bma_A Glutamate dehydrogenase 67.1 6.4 0.00022 44.8 6.0 57 224-290 236-292 (470)
216 3l8k_A Dihydrolipoyl dehydroge 67.0 4.8 0.00016 44.1 4.9 34 14-58 4-37 (466)
217 3e1t_A Halogenase; flavoprotei 66.7 4.2 0.00014 45.2 4.4 35 13-58 6-40 (512)
218 3axb_A Putative oxidoreductase 66.6 3.8 0.00013 44.1 3.9 39 9-57 18-56 (448)
219 2qa2_A CABE, polyketide oxygen 66.4 5.1 0.00018 44.7 5.1 36 13-59 11-46 (499)
220 1v59_A Dihydrolipoamide dehydr 66.3 4.7 0.00016 44.1 4.7 34 14-58 5-38 (478)
221 1y8q_A Ubiquitin-like 1 activa 66.2 3.4 0.00012 44.6 3.4 40 10-59 32-71 (346)
222 1xdi_A RV3303C-LPDA; reductase 66.0 4.3 0.00015 44.9 4.3 33 15-58 3-38 (499)
223 2cdu_A NADPH oxidase; flavoenz 65.6 5.2 0.00018 43.5 4.8 32 16-58 2-35 (452)
224 3vh1_A Ubiquitin-like modifier 65.5 3.5 0.00012 48.1 3.6 40 10-59 323-362 (598)
225 1v0j_A UDP-galactopyranose mut 65.4 5.5 0.00019 42.9 4.9 34 14-58 7-41 (399)
226 3lov_A Protoporphyrinogen oxid 65.1 6.6 0.00022 42.5 5.5 38 13-59 3-40 (475)
227 2vdc_G Glutamate synthase [NAD 65.0 5.2 0.00018 44.4 4.7 35 13-58 121-155 (456)
228 3h5n_A MCCB protein; ubiquitin 65.0 3.6 0.00012 44.5 3.4 40 10-59 114-153 (353)
229 2g1u_A Hypothetical protein TM 64.9 8.1 0.00028 35.8 5.4 37 10-57 15-51 (155)
230 3ihg_A RDME; flavoenzyme, anth 64.9 5.6 0.00019 44.2 5.0 37 13-60 4-40 (535)
231 1nhp_A NADH peroxidase; oxidor 64.7 5.4 0.00019 43.3 4.7 35 16-59 2-36 (447)
232 2ekl_A D-3-phosphoglycerate de 64.6 14 0.00047 39.2 7.7 46 686-733 105-166 (313)
233 3mw9_A GDH 1, glutamate dehydr 64.6 6.3 0.00021 45.2 5.3 56 5-73 233-290 (501)
234 2tmg_A Protein (glutamate dehy 64.5 13 0.00044 41.6 7.7 58 224-290 193-250 (415)
235 2ivd_A PPO, PPOX, protoporphyr 64.4 5.9 0.0002 42.8 4.9 34 14-58 16-49 (478)
236 1lvl_A Dihydrolipoamide dehydr 64.4 4.2 0.00014 44.5 3.8 32 14-56 5-36 (458)
237 3sx6_A Sulfide-quinone reducta 64.3 4.9 0.00017 43.5 4.3 37 15-59 5-41 (437)
238 2i0z_A NAD(FAD)-utilizing dehy 64.2 5.7 0.0002 43.3 4.8 33 15-58 27-59 (447)
239 3fg2_P Putative rubredoxin red 64.0 5.6 0.00019 42.6 4.6 35 241-284 2-36 (404)
240 3gwf_A Cyclohexanone monooxyge 64.0 5 0.00017 45.5 4.4 36 13-58 7-42 (540)
241 2bry_A NEDD9 interacting prote 63.9 7.3 0.00025 43.4 5.7 37 13-60 91-127 (497)
242 1ojt_A Surface protein; redox- 63.6 6.1 0.00021 43.5 4.9 34 14-58 6-39 (482)
243 1lqt_A FPRA; NADP+ derivative, 63.5 5.7 0.00019 43.9 4.7 39 13-58 2-43 (456)
244 2e4g_A Tryptophan halogenase; 63.2 6 0.00021 44.5 4.9 38 14-59 25-62 (550)
245 1tt5_B Ubiquitin-activating en 63.2 3.1 0.00011 46.5 2.5 45 5-59 31-75 (434)
246 1v9l_A Glutamate dehydrogenase 63.1 9.9 0.00034 42.6 6.5 57 224-290 194-250 (421)
247 3atr_A Conserved archaeal prot 63.0 4.4 0.00015 44.1 3.6 35 14-59 6-40 (453)
248 3c4n_A Uncharacterized protein 63.0 6 0.00021 42.3 4.6 34 14-58 36-71 (405)
249 1y0p_A Fumarate reductase flav 62.8 6 0.00021 44.6 4.8 39 11-60 123-161 (571)
250 2bc0_A NADH oxidase; flavoprot 62.6 6 0.00021 43.7 4.7 37 14-58 35-71 (490)
251 3o0h_A Glutathione reductase; 62.6 7.2 0.00025 42.9 5.3 32 14-56 26-57 (484)
252 4a9w_A Monooxygenase; baeyer-v 62.3 5.3 0.00018 40.5 3.8 34 240-284 3-36 (357)
253 1xhc_A NADH oxidase /nitrite r 62.2 7.3 0.00025 41.5 5.1 35 15-61 9-43 (367)
254 3fbs_A Oxidoreductase; structu 62.1 6.5 0.00022 38.9 4.4 32 241-283 3-34 (297)
255 1npy_A Hypothetical shikimate 62.0 7.5 0.00026 40.6 5.0 54 676-740 97-150 (271)
256 3dk9_A Grase, GR, glutathione 61.9 5.6 0.00019 43.6 4.2 34 13-57 19-52 (478)
257 2g1u_A Hypothetical protein TM 61.8 8.6 0.00029 35.7 4.9 37 236-283 15-51 (155)
258 1sez_A Protoporphyrinogen oxid 61.7 8 0.00027 42.1 5.4 35 14-59 13-47 (504)
259 2yfq_A Padgh, NAD-GDH, NAD-spe 61.6 11 0.00037 42.2 6.5 57 224-290 196-257 (421)
260 3lad_A Dihydrolipoamide dehydr 61.6 6.3 0.00022 43.0 4.6 34 14-58 3-36 (476)
261 2pyx_A Tryptophan halogenase; 61.6 6.9 0.00024 43.6 4.9 38 14-58 7-52 (526)
262 3i6d_A Protoporphyrinogen oxid 61.4 5.3 0.00018 42.6 3.8 39 15-58 6-44 (470)
263 2hmt_A YUAA protein; RCK, KTN, 61.3 6.6 0.00023 34.8 3.9 35 238-283 4-38 (144)
264 1hyu_A AHPF, alkyl hydroperoxi 61.3 5.9 0.0002 44.4 4.3 91 639-734 136-237 (521)
265 4gsl_A Ubiquitin-like modifier 61.1 5.6 0.00019 46.6 4.2 40 10-59 322-361 (615)
266 2r0c_A REBC; flavin adenine di 61.1 6.7 0.00023 44.2 4.8 36 13-59 25-60 (549)
267 2weu_A Tryptophan 5-halogenase 61.0 5.7 0.00019 43.7 4.1 36 15-58 3-38 (511)
268 2wpf_A Trypanothione reductase 60.9 6.9 0.00024 43.5 4.8 32 14-55 7-38 (495)
269 4hb9_A Similarities with proba 60.8 6.4 0.00022 40.8 4.2 32 241-283 2-33 (412)
270 2iid_A L-amino-acid oxidase; f 60.3 8.7 0.0003 41.9 5.4 34 14-58 33-66 (498)
271 3ihm_A Styrene monooxygenase A 60.3 7.3 0.00025 42.3 4.7 32 15-57 23-54 (430)
272 3ic5_A Putative saccharopine d 60.2 8.2 0.00028 33.0 4.2 33 240-282 5-37 (118)
273 3cgb_A Pyridine nucleotide-dis 60.2 7.3 0.00025 42.9 4.8 37 15-60 37-73 (480)
274 1tt5_B Ubiquitin-activating en 59.9 5.2 0.00018 44.8 3.5 37 237-283 37-73 (434)
275 2aqj_A Tryptophan halogenase, 59.9 8.2 0.00028 43.0 5.2 37 14-58 5-41 (538)
276 2qcu_A Aerobic glycerol-3-phos 59.8 8 0.00027 42.9 5.0 35 13-58 2-36 (501)
277 2bcg_G Secretory pathway GDP d 59.8 8.4 0.00029 42.1 5.1 36 13-59 10-45 (453)
278 2zbw_A Thioredoxin reductase; 59.7 6.9 0.00024 39.8 4.2 34 240-284 5-38 (335)
279 1qo8_A Flavocytochrome C3 fuma 59.7 6.4 0.00022 44.5 4.3 37 13-60 120-156 (566)
280 4dna_A Probable glutathione re 59.6 7.8 0.00027 42.3 4.8 32 14-56 5-36 (463)
281 1leh_A Leucine dehydrogenase; 59.5 18 0.0006 39.6 7.5 47 225-282 156-204 (364)
282 3f8d_A Thioredoxin reductase ( 59.4 7.8 0.00027 38.7 4.4 33 240-283 15-47 (323)
283 1edz_A 5,10-methylenetetrahydr 59.4 7.4 0.00025 42.1 4.5 76 8-100 171-251 (320)
284 3hyw_A Sulfide-quinone reducta 59.3 9.1 0.00031 41.5 5.3 34 241-283 3-36 (430)
285 1lss_A TRK system potassium up 59.0 11 0.00039 33.1 5.0 32 14-56 4-35 (140)
286 3oz2_A Digeranylgeranylglycero 58.9 8.1 0.00028 39.7 4.5 31 242-283 6-36 (397)
287 3lzw_A Ferredoxin--NADP reduct 58.8 8.3 0.00028 38.8 4.5 33 240-283 7-39 (332)
288 2hmt_A YUAA protein; RCK, KTN, 58.7 8.7 0.0003 34.0 4.2 35 12-57 4-38 (144)
289 3k30_A Histamine dehydrogenase 58.7 9.9 0.00034 44.1 5.7 35 13-58 390-424 (690)
290 1id1_A Putative potassium chan 58.6 3.5 0.00012 38.2 1.6 84 706-794 2-92 (153)
291 3hdq_A UDP-galactopyranose mut 58.6 9.7 0.00033 41.9 5.3 34 13-57 28-61 (397)
292 1c1d_A L-phenylalanine dehydro 58.2 19 0.00067 39.3 7.6 48 224-282 158-206 (355)
293 2rir_A Dipicolinate synthase, 58.2 12 0.0004 38.9 5.7 41 6-57 149-189 (300)
294 3lxd_A FAD-dependent pyridine 58.1 7.9 0.00027 41.5 4.5 37 239-284 8-44 (415)
295 3dme_A Conserved exported prot 58.0 9 0.00031 39.1 4.7 34 240-284 4-37 (369)
296 2jae_A L-amino acid oxidase; o 57.9 8.4 0.00029 41.9 4.7 41 233-284 4-44 (489)
297 1wwk_A Phosphoglycerate dehydr 57.9 12 0.00042 39.5 5.8 46 686-733 103-166 (307)
298 3hg7_A D-isomer specific 2-hyd 57.9 23 0.0008 38.0 8.1 67 8-100 134-200 (324)
299 3alj_A 2-methyl-3-hydroxypyrid 57.8 9 0.00031 40.3 4.8 37 237-284 8-44 (379)
300 1o94_A Tmadh, trimethylamine d 57.8 9.5 0.00033 44.7 5.4 35 14-59 389-423 (729)
301 1i8t_A UDP-galactopyranose mut 57.8 8.8 0.0003 40.9 4.8 32 15-57 2-33 (367)
302 1cjc_A Protein (adrenodoxin re 57.7 9.8 0.00034 42.1 5.3 37 14-59 6-42 (460)
303 2x8g_A Thioredoxin glutathione 57.5 8.9 0.0003 43.4 5.0 33 13-56 106-138 (598)
304 3h8l_A NADH oxidase; membrane 57.2 8.8 0.0003 40.8 4.6 37 241-285 2-38 (409)
305 3dje_A Fructosyl amine: oxygen 56.8 9.1 0.00031 40.9 4.7 37 240-286 6-42 (438)
306 1y8q_B Anthracycline-, ubiquit 56.8 6.1 0.00021 46.5 3.5 38 236-283 13-50 (640)
307 2gqw_A Ferredoxin reductase; f 56.7 11 0.00037 40.6 5.2 36 240-284 7-42 (408)
308 1ps9_A 2,4-dienoyl-COA reducta 56.6 11 0.00037 43.6 5.5 35 14-59 373-407 (671)
309 3ic9_A Dihydrolipoamide dehydr 56.4 8.6 0.00029 42.6 4.5 32 15-57 9-40 (492)
310 3itj_A Thioredoxin reductase 1 56.0 7.5 0.00026 39.2 3.7 33 240-283 22-54 (338)
311 3dfz_A SIRC, precorrin-2 dehyd 56.0 11 0.00036 38.7 4.8 35 11-56 28-62 (223)
312 3r9u_A Thioredoxin reductase; 56.0 10 0.00035 37.8 4.6 33 240-283 4-37 (315)
313 1leh_A Leucine dehydrogenase; 56.0 66 0.0023 35.1 11.3 99 635-740 93-203 (364)
314 1gpj_A Glutamyl-tRNA reductase 55.8 11 0.00039 41.0 5.3 36 237-282 164-199 (404)
315 1fec_A Trypanothione reductase 55.8 9.7 0.00033 42.2 4.8 32 14-55 3-34 (490)
316 2q0l_A TRXR, thioredoxin reduc 55.5 11 0.00036 38.0 4.7 33 241-283 2-34 (311)
317 2gag_B Heterotetrameric sarcos 55.5 11 0.00038 39.3 5.0 35 240-284 21-56 (405)
318 3c96_A Flavin-containing monoo 55.5 10 0.00035 40.4 4.8 35 240-284 4-38 (410)
319 2ywl_A Thioredoxin reductase r 55.4 11 0.00037 35.2 4.4 32 241-283 2-33 (180)
320 2dkh_A 3-hydroxybenzoate hydro 55.2 7.9 0.00027 44.5 4.1 35 13-58 31-66 (639)
321 1ryi_A Glycine oxidase; flavop 55.1 9.5 0.00032 39.6 4.4 35 240-285 17-51 (382)
322 2q7v_A Thioredoxin reductase; 55.0 8.2 0.00028 39.3 3.8 33 240-283 8-40 (325)
323 1y56_B Sarcosine oxidase; dehy 55.0 10 0.00035 39.5 4.6 34 240-284 5-38 (382)
324 2o7s_A DHQ-SDH PR, bifunctiona 55.0 14 0.00049 41.7 6.1 35 237-282 361-395 (523)
325 4eqs_A Coenzyme A disulfide re 54.5 8.9 0.00031 41.9 4.2 33 242-283 2-34 (437)
326 3axb_A Putative oxidoreductase 54.5 11 0.00037 40.5 4.8 38 235-282 18-55 (448)
327 1hyu_A AHPF, alkyl hydroperoxi 54.4 11 0.00039 42.1 5.1 33 13-56 211-243 (521)
328 1lss_A TRK system potassium up 54.3 13 0.00043 32.9 4.5 32 240-282 4-35 (140)
329 2o4c_A Erythronate-4-phosphate 54.2 18 0.00062 39.8 6.6 52 686-740 95-146 (380)
330 3cty_A Thioredoxin reductase; 54.1 10 0.00034 38.5 4.3 33 240-283 16-48 (319)
331 2rir_A Dipicolinate synthase, 54.1 15 0.0005 38.2 5.6 41 231-282 148-188 (300)
332 3llv_A Exopolyphosphatase-rela 54.1 12 0.00041 33.7 4.4 33 239-282 5-37 (141)
333 3ab1_A Ferredoxin--NADP reduct 54.0 11 0.00038 39.0 4.7 33 240-283 14-46 (360)
334 3ps9_A TRNA 5-methylaminomethy 54.0 13 0.00043 43.0 5.5 34 15-59 273-306 (676)
335 3nyc_A D-arginine dehydrogenas 54.0 8.9 0.0003 39.5 3.9 34 13-58 8-41 (381)
336 3g3e_A D-amino-acid oxidase; F 53.8 9.4 0.00032 39.5 4.1 38 16-58 2-39 (351)
337 1pn0_A Phenol 2-monooxygenase; 53.8 9.1 0.00031 44.5 4.3 39 13-58 7-46 (665)
338 1b37_A Protein (polyamine oxid 53.7 12 0.00042 40.6 5.2 36 14-59 4-39 (472)
339 3phh_A Shikimate dehydrogenase 53.7 8.2 0.00028 40.5 3.6 85 676-785 99-184 (269)
340 2gf3_A MSOX, monomeric sarcosi 53.2 11 0.00039 39.0 4.6 35 241-286 4-38 (389)
341 3oj0_A Glutr, glutamyl-tRNA re 53.1 3.8 0.00013 37.6 0.8 32 240-282 21-52 (144)
342 2d0i_A Dehydrogenase; structur 53.0 16 0.00054 39.1 5.7 29 703-733 142-170 (333)
343 3ef6_A Toluene 1,2-dioxygenase 53.0 12 0.0004 40.3 4.8 35 241-284 3-37 (410)
344 3pvc_A TRNA 5-methylaminomethy 52.9 13 0.00043 43.2 5.3 34 14-58 264-297 (689)
345 3k7m_X 6-hydroxy-L-nicotine ox 52.7 13 0.00043 39.5 4.9 33 241-284 2-34 (431)
346 3qfa_A Thioredoxin reductase 1 52.7 13 0.00046 41.4 5.3 34 13-57 31-64 (519)
347 3lk7_A UDP-N-acetylmuramoylala 52.5 13 0.00046 40.9 5.3 35 12-57 7-41 (451)
348 4at0_A 3-ketosteroid-delta4-5a 52.4 11 0.00038 41.9 4.6 35 14-59 41-75 (510)
349 1zk7_A HGII, reductase, mercur 52.1 12 0.00041 40.8 4.7 33 240-283 4-36 (467)
350 3fmw_A Oxygenase; mithramycin, 52.1 12 0.00039 42.8 4.8 35 14-59 49-83 (570)
351 1y8q_B Anthracycline-, ubiquit 52.1 6.8 0.00023 46.1 2.9 40 10-59 13-52 (640)
352 1yvv_A Amine oxidase, flavin-c 52.0 13 0.00044 37.7 4.7 32 241-283 3-34 (336)
353 2vdc_G Glutamate synthase [NAD 51.9 14 0.00047 41.0 5.2 34 239-283 121-154 (456)
354 3ic5_A Putative saccharopine d 51.9 17 0.00057 31.1 4.7 34 14-57 5-38 (118)
355 2xve_A Flavin-containing monoo 51.8 13 0.00045 40.9 5.0 38 241-283 3-40 (464)
356 2gmh_A Electron transfer flavo 51.7 10 0.00035 43.3 4.2 38 15-59 36-75 (584)
357 3dgz_A Thioredoxin reductase 2 51.3 12 0.00041 41.2 4.6 33 14-57 6-38 (488)
358 2uzz_A N-methyl-L-tryptophan o 51.2 12 0.0004 38.8 4.3 35 241-286 3-37 (372)
359 4b1b_A TRXR, thioredoxin reduc 51.0 13 0.00043 42.5 4.8 40 6-56 30-73 (542)
360 3rp8_A Flavoprotein monooxygen 50.9 13 0.00045 39.3 4.7 36 238-284 21-56 (407)
361 2x3n_A Probable FAD-dependent 50.7 12 0.00043 39.3 4.5 34 240-284 6-39 (399)
362 1c0p_A D-amino acid oxidase; a 50.7 15 0.00051 38.2 5.0 34 240-284 6-39 (363)
363 3dgh_A TRXR-1, thioredoxin red 50.7 13 0.00046 40.7 4.8 33 13-56 8-40 (483)
364 2eez_A Alanine dehydrogenase; 50.7 22 0.00074 38.2 6.4 35 237-282 163-197 (369)
365 2xdo_A TETX2 protein; tetracyc 50.4 13 0.00043 39.5 4.5 36 238-284 24-59 (398)
366 2gv8_A Monooxygenase; FMO, FAD 50.4 12 0.00041 40.6 4.3 37 239-284 5-41 (447)
367 3cgv_A Geranylgeranyl reductas 50.2 14 0.00047 38.4 4.6 35 240-285 4-38 (397)
368 3nlc_A Uncharacterized protein 50.1 12 0.00039 43.0 4.4 33 14-57 107-139 (549)
369 1gte_A Dihydropyrimidine dehyd 50.1 13 0.00045 45.5 5.1 34 14-57 187-220 (1025)
370 3c85_A Putative glutathione-re 49.8 13 0.00043 35.2 4.0 77 704-790 36-122 (183)
371 2vou_A 2,6-dihydroxypyridine h 49.8 15 0.00051 38.9 4.9 35 239-284 4-38 (397)
372 4gut_A Lysine-specific histone 49.6 15 0.0005 43.9 5.3 37 12-59 334-370 (776)
373 2oln_A NIKD protein; flavoprot 49.5 13 0.00043 39.1 4.3 35 241-286 5-39 (397)
374 3d0o_A L-LDH 1, L-lactate dehy 49.4 18 0.0006 38.3 5.4 38 11-57 3-40 (317)
375 3nix_A Flavoprotein/dehydrogen 49.3 12 0.0004 39.6 4.0 34 240-284 5-38 (421)
376 1k0i_A P-hydroxybenzoate hydro 49.2 16 0.00056 38.2 5.1 34 241-285 3-36 (394)
377 3v76_A Flavoprotein; structura 49.2 13 0.00044 40.7 4.5 35 240-285 27-61 (417)
378 3ka7_A Oxidoreductase; structu 49.1 15 0.00052 38.7 4.8 32 242-284 2-33 (425)
379 1dxl_A Dihydrolipoamide dehydr 49.0 16 0.00053 39.8 5.0 33 240-283 6-38 (470)
380 4gcm_A TRXR, thioredoxin reduc 49.0 13 0.00046 37.5 4.3 33 240-283 6-38 (312)
381 2r9z_A Glutathione amide reduc 48.9 14 0.00047 40.6 4.6 33 240-283 4-36 (463)
382 1q1r_A Putidaredoxin reductase 48.8 15 0.00051 39.9 4.8 36 240-284 4-39 (431)
383 1pjc_A Protein (L-alanine dehy 48.6 20 0.00067 38.5 5.7 34 12-56 165-198 (361)
384 1id1_A Putative potassium chan 48.6 17 0.00059 33.4 4.6 34 239-283 2-35 (153)
385 3oet_A Erythronate-4-phosphate 48.5 21 0.00073 39.3 6.0 48 224-282 103-150 (381)
386 2j6i_A Formate dehydrogenase; 48.5 29 0.00099 37.6 7.0 47 686-734 123-189 (364)
387 2o4c_A Erythronate-4-phosphate 48.4 21 0.00073 39.2 6.0 48 224-282 100-147 (380)
388 1tt5_A APPBP1, amyloid protein 48.3 9.1 0.00031 43.8 3.2 40 10-59 28-67 (531)
389 3s5w_A L-ornithine 5-monooxyge 48.2 13 0.00043 40.2 4.1 39 240-285 30-69 (463)
390 1tt5_A APPBP1, amyloid protein 47.9 7 0.00024 44.8 2.2 39 236-284 28-66 (531)
391 2gjc_A Thiazole biosynthetic e 47.7 13 0.00046 40.0 4.2 35 14-59 65-101 (326)
392 2g76_A 3-PGDH, D-3-phosphoglyc 47.7 32 0.0011 37.0 7.1 67 702-780 160-226 (335)
393 1vdc_A NTR, NADPH dependent th 47.6 13 0.00045 37.7 3.9 33 239-282 7-39 (333)
394 2wdq_A Succinate dehydrogenase 47.5 15 0.00052 42.0 4.9 36 14-60 7-42 (588)
395 3h28_A Sulfide-quinone reducta 47.5 15 0.00052 39.5 4.6 34 241-283 3-36 (430)
396 1c1d_A L-phenylalanine dehydro 47.4 84 0.0029 34.3 10.4 103 632-740 93-205 (355)
397 4g6h_A Rotenone-insensitive NA 47.3 8.8 0.0003 43.0 2.8 32 241-283 43-74 (502)
398 3tri_A Pyrroline-5-carboxylate 47.2 18 0.00062 37.3 4.9 70 13-102 2-71 (280)
399 3da1_A Glycerol-3-phosphate de 47.2 16 0.00056 41.4 5.0 34 13-57 17-50 (561)
400 3jtm_A Formate dehydrogenase, 47.1 35 0.0012 37.0 7.3 68 702-780 159-227 (351)
401 3urh_A Dihydrolipoyl dehydroge 47.1 15 0.00052 40.3 4.6 34 239-283 24-57 (491)
402 2gag_A Heterotetrameric sarcos 47.1 15 0.00051 44.7 4.9 34 14-58 128-161 (965)
403 3llv_A Exopolyphosphatase-rela 47.0 20 0.00069 32.3 4.7 32 14-56 6-37 (141)
404 2qae_A Lipoamide, dihydrolipoy 46.9 16 0.00053 39.9 4.6 33 240-283 2-34 (468)
405 1d5t_A Guanine nucleotide diss 46.8 18 0.00063 39.3 5.2 36 14-60 6-41 (433)
406 3nrn_A Uncharacterized protein 46.8 17 0.00058 38.6 4.8 32 242-284 2-33 (421)
407 3ces_A MNMG, tRNA uridine 5-ca 46.7 16 0.00056 43.0 5.0 34 13-57 27-60 (651)
408 1gtm_A Glutamate dehydrogenase 46.6 36 0.0012 37.9 7.4 38 224-261 195-233 (419)
409 3c85_A Putative glutathione-re 46.5 19 0.00066 33.9 4.7 34 12-56 37-71 (183)
410 2z3y_A Lysine-specific histone 46.5 20 0.00069 41.5 5.7 35 13-58 106-140 (662)
411 2cul_A Glucose-inhibited divis 46.5 17 0.00058 35.8 4.4 33 240-283 3-35 (232)
412 1kyq_A Met8P, siroheme biosynt 46.3 14 0.00049 38.9 4.0 35 11-56 10-44 (274)
413 2hqm_A GR, grase, glutathione 46.3 14 0.00048 40.6 4.2 34 239-283 10-43 (479)
414 2ewd_A Lactate dehydrogenase,; 46.3 22 0.00075 37.2 5.5 33 241-283 5-37 (317)
415 2eq6_A Pyruvate dehydrogenase 46.3 13 0.00045 40.7 3.9 34 240-284 6-39 (464)
416 1mo9_A ORF3; nucleotide bindin 46.1 15 0.00052 40.9 4.5 35 239-284 42-76 (523)
417 3uox_A Otemo; baeyer-villiger 46.1 17 0.00057 41.3 4.8 35 239-284 8-42 (545)
418 4a5l_A Thioredoxin reductase; 46.0 14 0.00049 37.0 3.9 32 241-283 5-36 (314)
419 1pj5_A N,N-dimethylglycine oxi 45.9 17 0.00058 43.0 5.0 37 14-60 4-40 (830)
420 3iwa_A FAD-dependent pyridine 45.8 19 0.00064 39.3 5.1 38 240-286 3-40 (472)
421 2a87_A TRXR, TR, thioredoxin r 45.8 15 0.0005 37.8 4.0 34 239-283 13-46 (335)
422 2rgh_A Alpha-glycerophosphate 45.6 19 0.00064 41.0 5.2 35 13-58 31-65 (571)
423 4dsg_A UDP-galactopyranose mut 45.5 20 0.00069 39.7 5.3 36 13-58 8-43 (484)
424 2x5o_A UDP-N-acetylmuramoylala 45.3 15 0.00051 40.3 4.2 36 13-59 4-39 (439)
425 3cmm_A Ubiquitin-activating en 45.3 14 0.0005 45.5 4.4 38 236-283 23-60 (1015)
426 3fwz_A Inner membrane protein 45.2 20 0.00068 32.7 4.4 32 241-283 8-39 (140)
427 4ap3_A Steroid monooxygenase; 45.1 16 0.00054 41.5 4.4 35 239-284 20-54 (549)
428 3kd9_A Coenzyme A disulfide re 45.1 24 0.00081 38.3 5.6 36 240-284 3-38 (449)
429 1lld_A L-lactate dehydrogenase 45.1 24 0.00083 36.4 5.5 36 13-57 6-41 (319)
430 1fl2_A Alkyl hydroperoxide red 45.0 16 0.00054 36.7 4.0 31 241-282 2-32 (310)
431 2yqu_A 2-oxoglutarate dehydrog 45.0 17 0.00057 39.5 4.4 32 241-283 2-33 (455)
432 2bc0_A NADH oxidase; flavoprot 44.9 19 0.00067 39.6 5.0 37 240-284 35-71 (490)
433 1trb_A Thioredoxin reductase; 44.8 14 0.00048 37.2 3.6 33 240-283 5-37 (320)
434 1v8b_A Adenosylhomocysteinase; 44.8 20 0.00069 40.7 5.2 53 682-740 235-287 (479)
435 3k30_A Histamine dehydrogenase 44.7 21 0.00071 41.4 5.4 33 240-283 391-423 (690)
436 3klj_A NAD(FAD)-dependent dehy 44.5 13 0.00044 40.0 3.5 34 239-283 8-41 (385)
437 2v3a_A Rubredoxin reductase; a 44.4 17 0.00057 38.5 4.3 35 240-283 4-38 (384)
438 4e5n_A Thermostable phosphite 44.3 21 0.00073 38.2 5.1 30 702-733 140-169 (330)
439 1y56_A Hypothetical protein PH 44.2 9.1 0.00031 42.5 2.3 34 14-59 108-141 (493)
440 3ntd_A FAD-dependent pyridine 44.1 22 0.00076 39.5 5.4 36 241-285 2-37 (565)
441 1ges_A Glutathione reductase; 43.8 14 0.00048 40.3 3.7 33 240-283 4-36 (450)
442 2zxi_A TRNA uridine 5-carboxym 43.8 17 0.0006 42.6 4.6 34 13-57 26-59 (637)
443 3dtt_A NADP oxidoreductase; st 43.8 21 0.00071 35.9 4.7 39 234-283 13-51 (245)
444 1pzg_A LDH, lactate dehydrogen 43.7 23 0.00077 37.8 5.1 33 241-283 10-42 (331)
445 1m6i_A Programmed cell death p 43.5 20 0.00069 39.7 4.9 37 239-284 10-46 (493)
446 1onf_A GR, grase, glutathione 43.4 17 0.00059 40.2 4.3 32 241-283 3-34 (500)
447 4hy3_A Phosphoglycerate oxidor 43.4 32 0.0011 37.6 6.4 67 702-780 171-237 (365)
448 1pjc_A Protein (L-alanine dehy 43.4 21 0.00072 38.3 4.9 34 238-282 165-198 (361)
449 3lad_A Dihydrolipoamide dehydr 43.4 21 0.00073 38.9 5.0 33 240-283 3-35 (476)
450 1gpj_A Glutamyl-tRNA reductase 43.3 25 0.00084 38.4 5.5 36 11-56 164-199 (404)
451 3sx6_A Sulfide-quinone reducta 43.2 17 0.00056 39.4 4.1 35 241-283 5-39 (437)
452 1ebd_A E3BD, dihydrolipoamide 43.2 16 0.00055 39.7 4.0 32 241-283 4-35 (455)
453 2a8x_A Dihydrolipoyl dehydroge 43.1 17 0.00057 39.6 4.1 33 240-283 3-35 (464)
454 3jsk_A Cypbp37 protein; octame 43.0 19 0.00064 39.2 4.4 37 14-59 79-115 (344)
455 3dfz_A SIRC, precorrin-2 dehyd 42.9 19 0.00065 36.8 4.2 35 237-282 28-62 (223)
456 2i99_A MU-crystallin homolog; 42.9 61 0.0021 33.9 8.2 48 224-282 121-168 (312)
457 2hjr_A Malate dehydrogenase; m 42.8 22 0.00077 37.8 5.0 33 241-283 15-47 (328)
458 1lvl_A Dihydrolipoamide dehydr 42.8 19 0.00064 39.4 4.4 33 240-283 5-37 (458)
459 4fk1_A Putative thioredoxin re 42.8 19 0.00065 36.5 4.2 34 239-283 5-38 (304)
460 3p2o_A Bifunctional protein fo 42.7 38 0.0013 36.2 6.6 48 224-282 144-192 (285)
461 1x7d_A Ornithine cyclodeaminas 42.6 48 0.0016 35.7 7.5 48 224-282 115-162 (350)
462 3oet_A Erythronate-4-phosphate 42.6 28 0.00096 38.4 5.8 53 685-740 97-149 (381)
463 3ics_A Coenzyme A-disulfide re 42.5 27 0.00091 39.4 5.7 38 239-285 35-72 (588)
464 1zmd_A Dihydrolipoyl dehydroge 42.5 17 0.00058 39.7 4.0 34 240-284 6-39 (474)
465 1a4i_A Methylenetetrahydrofola 42.4 35 0.0012 36.7 6.3 48 224-282 149-197 (301)
466 3i3l_A Alkylhalidase CMLS; fla 42.3 21 0.00073 41.0 5.0 37 238-285 21-57 (591)
467 3g0o_A 3-hydroxyisobutyrate de 42.2 18 0.00063 37.3 4.1 67 707-782 7-73 (303)
468 3pp8_A Glyoxylate/hydroxypyruv 42.2 25 0.00085 37.5 5.2 48 684-733 100-163 (315)
469 3hg7_A D-isomer specific 2-hyd 42.1 36 0.0012 36.5 6.4 45 687-733 104-164 (324)
470 1lld_A L-lactate dehydrogenase 42.1 25 0.00084 36.3 5.0 35 240-283 7-41 (319)
471 1s3e_A Amine oxidase [flavin-c 42.0 22 0.00074 39.2 4.8 34 240-284 4-37 (520)
472 3o0h_A Glutathione reductase; 42.0 22 0.00075 39.1 4.8 33 240-283 26-58 (484)
473 2wpf_A Trypanothione reductase 41.9 24 0.0008 39.2 5.1 31 240-281 7-38 (495)
474 4dgk_A Phytoene dehydrogenase; 41.7 19 0.00063 39.1 4.2 22 241-262 2-23 (501)
475 3l07_A Bifunctional protein fo 41.7 40 0.0014 36.0 6.6 48 224-282 145-193 (285)
476 1t2d_A LDH-P, L-lactate dehydr 41.7 20 0.00067 38.2 4.2 33 241-283 5-37 (322)
477 1pjq_A CYSG, siroheme synthase 41.5 24 0.00084 39.2 5.2 35 11-56 9-43 (457)
478 2qcu_A Aerobic glycerol-3-phos 41.4 22 0.00076 39.3 4.8 35 240-285 3-37 (501)
479 2e4g_A Tryptophan halogenase; 41.4 21 0.00073 40.0 4.7 37 240-284 25-61 (550)
480 4a26_A Putative C-1-tetrahydro 41.2 40 0.0014 36.2 6.6 48 224-282 149-197 (300)
481 2w2k_A D-mandelate dehydrogena 41.2 39 0.0013 36.2 6.6 30 702-733 158-188 (348)
482 2eez_A Alanine dehydrogenase; 41.1 29 0.00098 37.3 5.5 35 11-56 163-197 (369)
483 2cdc_A Glucose dehydrogenase g 41.1 31 0.0011 36.5 5.7 32 240-282 181-212 (366)
484 3cp8_A TRNA uridine 5-carboxym 41.1 23 0.00079 41.6 5.1 37 10-57 17-53 (641)
485 4g2n_A D-isomer specific 2-hyd 40.9 44 0.0015 36.2 6.9 46 686-733 131-197 (345)
486 2ph5_A Homospermidine synthase 40.8 23 0.0008 40.3 4.9 37 14-57 13-49 (480)
487 1w4x_A Phenylacetone monooxyge 40.8 22 0.00074 39.9 4.6 35 239-284 15-49 (542)
488 3oj0_A Glutr, glutamyl-tRNA re 40.7 7.5 0.00026 35.6 0.8 69 707-784 21-91 (144)
489 3g3e_A D-amino-acid oxidase; F 40.6 24 0.00083 36.4 4.7 38 242-284 2-39 (351)
490 3dtt_A NADP oxidoreductase; st 40.5 29 0.001 34.8 5.1 39 8-57 13-51 (245)
491 3qj4_A Renalase; FAD/NAD(P)-bi 40.5 16 0.00054 37.7 3.3 35 241-283 2-36 (342)
492 3l8k_A Dihydrolipoyl dehydroge 40.4 21 0.00073 39.0 4.4 34 240-284 4-37 (466)
493 2i6t_A Ubiquitin-conjugating e 40.4 30 0.001 36.6 5.4 34 241-283 15-48 (303)
494 2b9w_A Putative aminooxidase; 40.4 24 0.0008 37.4 4.6 35 239-283 5-39 (424)
495 2gqf_A Hypothetical protein HI 40.3 18 0.00063 39.1 3.9 34 240-284 4-37 (401)
496 1yqd_A Sinapyl alcohol dehydro 40.2 27 0.00093 37.0 5.1 46 226-282 174-219 (366)
497 3i6d_A Protoporphyrinogen oxid 40.2 21 0.00073 37.9 4.3 38 241-283 6-43 (470)
498 2xag_A Lysine-specific histone 40.2 28 0.00094 42.2 5.7 35 13-58 277-311 (852)
499 3d64_A Adenosylhomocysteinase; 40.1 17 0.00058 41.5 3.6 39 699-740 269-307 (494)
500 2i0z_A NAD(FAD)-utilizing dehy 40.0 22 0.00077 38.6 4.5 33 241-284 27-59 (447)
No 1
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Probab=100.00 E-value=1.5e-103 Score=886.02 Aligned_cols=358 Identities=48% Similarity=0.860 Sum_probs=335.3
Q ss_pred Ccchhhh-hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCce
Q psy14377 308 PVKNLAD-VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGER 386 (848)
Q Consensus 308 ~~~~l~~-~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~ 386 (848)
+...|++ .+|||++||.+||+++|++|||||.|+|+|+|++||+.++++++++++||+||.+++++ |++
T Consensus 5 G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~~~----------Ne~ 74 (564)
T 1pj3_A 5 GKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGIQER----------NEK 74 (564)
T ss_dssp STHHHHSTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHTT----------CHH
T ss_pred hHHHhCCCcccCCCCCCHHHHHhCCCCcCCCCCcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcc----------cce
Confidence 4566777 88999999999999999999999999999999999999999999999999999999998 776
Q ss_pred ecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCc
Q psy14377 387 ILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSK 466 (848)
Q Consensus 387 l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~ 466 (848)
|
T Consensus 75 L------------------------------------------------------------------------------- 75 (564)
T 1pj3_A 75 L------------------------------------------------------------------------------- 75 (564)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred e-------------------------------------------------------------------------------
Confidence 6
Q ss_pred cCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccH
Q psy14377 467 AECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHI 546 (848)
Q Consensus 467 ~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i 546 (848)
||+ +.+.|..++||++||||||++|+.++.+|++|+|||+|++|++++
T Consensus 76 ---------------------------fy~-----ll~~~~~e~lpivYTP~Vg~ac~~~s~i~~~p~g~ylsi~d~~~i 123 (564)
T 1pj3_A 76 ---------------------------FYR-----ILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHV 123 (564)
T ss_dssp ---------------------------HHH-----HHHHCHHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCH
T ss_pred ---------------------------ehh-----hhhhCHHHhCCeeeCccHHHHHHHHHHHhcCcccccccccCHHHH
Confidence 555 778999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccEEEEecCceeeccCCCCCCCCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccc
Q psy14377 547 SEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626 (848)
Q Consensus 547 ~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~ 626 (848)
+++|+||+.+++++||||||||||||||+|++||+|||||++|||+||||||++|||||||+|||||+||+||+|+|+||
T Consensus 124 ~~~l~n~~~~~v~v~VVTDG~~ILGLGD~G~~gm~ipvGKl~Ly~~~aGIdP~~~lPI~lDvgTnn~~LL~DPlYlG~r~ 203 (564)
T 1pj3_A 124 RSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQ 203 (564)
T ss_dssp HHHHTTCSCSCCCEEEEECSSSCTTSCCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCCSCSS
T ss_pred HHHHHhCCCCCceEEEEEcccccccCCCCCCCcccceehHHHHHHhccCCChhheeeeEeecCcCchhhccCCcccCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCcCC
Q psy14377 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLS 706 (848)
Q Consensus 627 ~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~ 706 (848)
+|++|++|++|+||||++++++|||+++||||||++||||++|+|||++||||||||||||+|+||||+||+|++|++|+
T Consensus 204 ~Rv~g~eYd~fvdefv~av~~~fG~~~~I~~EDf~~~~af~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~ 283 (564)
T 1pj3_A 204 KRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPIS 283 (564)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSSEEEHHHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCCchhhHHHHHHHHHHHHHHHcCCCcEEeehhcCCccHHHHHHHhccCCCEeCCCCchHHHHHHHHHHHHHHHhCCcHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEecCcchhhHHHHHHHHHHHhcc----------ccccccc-CceecCCCCCCchH-HHhhhccccc---hhhcccc
Q psy14377 707 DNTILFQGAGEGTASVAVAGLLASLRI----------TKTRLSD-NTILFQGAGEGTAS-VAIAGLLASL---RITKTRL 771 (848)
Q Consensus 707 d~riv~~GAG~A~~g~giA~ll~~~~~----------~~~~~~d-~g~i~~~r~~~~~~-~~~~~~~~~~---r~~~~~~ 771 (848)
||||||+|||+| |+|||+||+++|+ ++..++| +|+|+++|+++++. +...+..++. ++|++++
T Consensus 284 d~riv~~GAGaA--gigia~ll~~~m~~~Gl~~eeA~~~i~~~D~~Gli~~~r~~~l~~~k~~~A~~~~~~~~~~L~eav 361 (564)
T 1pj3_A 284 EHKILFLGAGEA--ALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAV 361 (564)
T ss_dssp GCCEEEECCSHH--HHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHH
T ss_pred HcEEEEeCCCHH--HHHHHHHHHHHHHHcCCChHHhhCcEEEEeCCCeEECCCcccchHHHHHHHHhcCccccCCHHHHH
Confidence 999999999999 9999999998433 3456889 99999999556665 5555666654 7899999
Q ss_pred C--CCceEEeecC-CCcchh
Q psy14377 772 S--DNTILFQGSG-EGTASV 788 (848)
Q Consensus 772 ~--~~~~~~~~s~-~~~~~~ 788 (848)
+ ++|+|+|+|+ .|+-+-
T Consensus 362 ~~vkp~vlIG~S~~~g~ft~ 381 (564)
T 1pj3_A 362 NILKPSTIIGVAGAGRLFTP 381 (564)
T ss_dssp HHHCCSEEEECCCSSCCSCH
T ss_pred hhcCCCEEEEeCCCCCCCCH
Confidence 9 6999999997 566543
No 2
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=100.00 E-value=3.2e-103 Score=880.99 Aligned_cols=357 Identities=55% Similarity=0.929 Sum_probs=333.8
Q ss_pred Ccchhhh-hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCce
Q psy14377 308 PVKNLAD-VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGER 386 (848)
Q Consensus 308 ~~~~l~~-~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~ 386 (848)
+...|++ .+|||++||.+||+++|++|||||.|+|+|+|++||+.++++++++++||+||.+++++ |++
T Consensus 3 G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~~~----------Ne~ 72 (555)
T 1gq2_A 3 GYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSLQDR----------NEK 72 (555)
T ss_dssp TTHHHHCTTTCCGGGSCHHHHHHTTCTTSSCSCBCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------CHH
T ss_pred hhhhccCCcccCCCCCCHHHHHHCCCccCCCCCcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCc----------cee
Confidence 3455666 88999999999999999999999999999999999999999999999999999999998 776
Q ss_pred ecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCc
Q psy14377 387 ILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSK 466 (848)
Q Consensus 387 l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~ 466 (848)
|
T Consensus 73 L------------------------------------------------------------------------------- 73 (555)
T 1gq2_A 73 L------------------------------------------------------------------------------- 73 (555)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred e-------------------------------------------------------------------------------
Confidence 6
Q ss_pred cCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccH
Q psy14377 467 AECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHI 546 (848)
Q Consensus 467 ~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i 546 (848)
||+ +.+.|..++||++||||||++|+.++.+|++|+|||+|++|++++
T Consensus 74 ---------------------------fy~-----ll~~~~~e~lpivYTP~V~~ac~~~s~i~~~p~g~yis~~d~~~i 121 (555)
T 1gq2_A 74 ---------------------------FYK-----VLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHI 121 (555)
T ss_dssp ---------------------------HHH-----HHHHTHHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCH
T ss_pred ---------------------------ehh-----hHhhhHHHhcCcccCchHHHHHHHHHHHhcChhhhhcccCCHHHH
Confidence 555 778899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccEEEEecCceeeccCCCCCCCCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccc
Q psy14377 547 SEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626 (848)
Q Consensus 547 ~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~ 626 (848)
+++++|||.+++++||||||||||||||+|++||+||+||++|||+||||||++|||||||+|||||+||+||+|+|+||
T Consensus 122 ~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G~~g~~ipvGKl~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~DplYlG~r~ 201 (555)
T 1gq2_A 122 ATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRH 201 (555)
T ss_dssp HHHHHTSSCSCCCEEEEECSSSCGGGCCCGGGGGHHHHHHHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSS
T ss_pred HHHHhcCCCCCcEEEEEEccccccccCCCCCCccccchhHHHHhHhccCCChhheeeeEeecCCCchhhcCCCccCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCCcCC
Q psy14377 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLS 706 (848)
Q Consensus 627 ~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~ 706 (848)
+|++|++|++|+||||++++++|||+++||||||++||||++|+|||++||||||||||||+|+||||+||+|++|++|+
T Consensus 202 ~Rv~g~eyd~fvdefv~av~~~fGp~~~I~~EDf~~~~af~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~ 281 (555)
T 1gq2_A 202 KRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLS 281 (555)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSEEEETTTHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred CCCchHHHHHHHHHHHHHHHHhhCCCcEEeecccCCccHHHHHHHHhccCCEecCccchHHHHHHHHHHHHHHHhCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEecCcchhhHHHHHHHHHHHhcc----------ccccccc-CceecCCCCCCchH-HHhhhccc-cchhhccccCC
Q psy14377 707 DNTILFQGAGEGTASVAVAGLLASLRI----------TKTRLSD-NTILFQGAGEGTAS-VAIAGLLA-SLRITKTRLSD 773 (848)
Q Consensus 707 d~riv~~GAG~A~~g~giA~ll~~~~~----------~~~~~~d-~g~i~~~r~~~~~~-~~~~~~~~-~~r~~~~~~~~ 773 (848)
||||||+|||+| |+|||+||+++|+ ++..++| +|+|+++|+. ++. +...+..+ ..++|++++++
T Consensus 282 d~riv~~GAGaA--g~gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~~-l~~~k~~~A~~~~~~~~L~eav~~ 358 (555)
T 1gq2_A 282 DHTVLFQGAGEA--ALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRAS-LTPEKEHFAHEHCEMKNLEDIVKD 358 (555)
T ss_dssp GCCEEEECCSHH--HHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSS-CCTTGGGGCBSCCCCCCHHHHHHH
T ss_pred hcEEEEECCCHH--HHHHHHHHHHHHHHcCCChHHHhCcEEEEECCCeeeCCCCC-chHHHHHHHhhcCCCCCHHHHHhh
Confidence 999999999999 9999999999543 3556899 9999999974 554 55555555 35789999995
Q ss_pred --CceEEeecC-CCcchh
Q psy14377 774 --NTILFQGSG-EGTASV 788 (848)
Q Consensus 774 --~~~~~~~s~-~~~~~~ 788 (848)
+|+|+|+|+ .|+-+-
T Consensus 359 vkp~vlIG~S~~~g~ft~ 376 (555)
T 1gq2_A 359 IKPTVLIGVAAIGGAFTQ 376 (555)
T ss_dssp HCCSEEEECSCCTTCSCH
T ss_pred cCCCEEEEecCCCCCCCH
Confidence 999999997 566543
No 3
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*
Probab=100.00 E-value=1.6e-102 Score=879.73 Aligned_cols=358 Identities=47% Similarity=0.798 Sum_probs=335.3
Q ss_pred CCcchhhh-hhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCc
Q psy14377 307 APVKNLAD-VVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGE 385 (848)
Q Consensus 307 ~~~~~l~~-~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~ 385 (848)
++...|++ .+|||++||.+||+++|++|||||.|+|+|+|++||+.++++++++++||+||.+|+++ |+
T Consensus 38 ~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~~~----------Ne 107 (605)
T 1o0s_A 38 RSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDR----------NE 107 (605)
T ss_dssp CHHHHHTCTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHH----------CH
T ss_pred chHHHhCCCcccCCCCCCHHHHHHCCCCcCCCCCcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHhhcc----------cc
Confidence 45667777 89999999999999999999999999999999999999999999999999999999998 77
Q ss_pred eecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCC
Q psy14377 386 RILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTS 465 (848)
Q Consensus 386 ~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~ 465 (848)
+|
T Consensus 108 ~L------------------------------------------------------------------------------ 109 (605)
T 1o0s_A 108 KL------------------------------------------------------------------------------ 109 (605)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred hh------------------------------------------------------------------------------
Confidence 66
Q ss_pred ccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCc--
Q psy14377 466 KAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDK-- 543 (848)
Q Consensus 466 ~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~-- 543 (848)
||+ +.+.|..++||++||||||++|+.++.+|++|+|||+|++|+
T Consensus 110 ----------------------------fyr-----ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~g~yis~~d~~~ 156 (605)
T 1o0s_A 110 ----------------------------FYR-----VVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSV 156 (605)
T ss_dssp ----------------------------HHH-----HHHHTHHHHHHHHSTTHHHHHHHHHCSCCCCCCSEEEEGGGCSH
T ss_pred ----------------------------hhh-----hhhhCHHHhCCeeeCccHHHHHHHHHHHhcChHhhhccccCccc
Confidence 555 778899999999999999999999999999999999999999
Q ss_pred ccHHHHHhcCCCCCccEEEEecCceeeccCCCCCCCCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCccccc
Q psy14377 544 GHISEVLRNWPETDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623 (848)
Q Consensus 544 g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g 623 (848)
++++++|+|||.+++++||||||||||||||+|++||+||+||++|||+||||||++|||||||+|||||+||+||+|+|
T Consensus 157 ~~i~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G~~g~~ipvGKl~Ly~~~aGIdP~~~lPI~LDvGTnne~LL~DPlYlG 236 (605)
T 1o0s_A 157 SKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIG 236 (605)
T ss_dssp HHHHHHHTTSSCSCCCEEEEECSSCBTTTBCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCHHHHHCTTCCS
T ss_pred chHHHHHhcCCCCCceEEEEEccccceecCCCCCCcCcceeeHHHHHHhccCCChhheeeeEeccCCChhhhccCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccCceeccCCchHHHHHHHHHHHHHhhhCC
Q psy14377 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKT 703 (848)
Q Consensus 624 ~r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~~~FnDDiQGTaaV~LAgllaAlr~t~~ 703 (848)
+||+|++|++|++|+||||++++++|||+++||||||++||||++|+|||++||||||||||||+|+||||+||+|++|+
T Consensus 237 ~r~~Rv~g~~Yd~fvdefv~av~~~fGp~~~I~~EDf~~p~af~il~ryr~~ipvFnDDiqGTA~V~lAgllnAlki~gk 316 (605)
T 1o0s_A 237 LRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKK 316 (605)
T ss_dssp CSSCCCCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSEEEEHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCCCChHHHHHHHHHHHHHHHHHhCCCcEeeHhhcCCccHHHHHHHhccCCCeeCcccchHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEecCcchhhHHHHHHHHHHHhcc----------ccccccc-CceecCCCCCCchH-HHhhhccc-cchhhccc
Q psy14377 704 RLSDNTILFQGAGEGTASVAVAGLLASLRI----------TKTRLSD-NTILFQGAGEGTAS-VAIAGLLA-SLRITKTR 770 (848)
Q Consensus 704 ~l~d~riv~~GAG~A~~g~giA~ll~~~~~----------~~~~~~d-~g~i~~~r~~~~~~-~~~~~~~~-~~r~~~~~ 770 (848)
+|+||||||+|||+| |+|||+||+++|+ ++..++| +|+|+++|+. ++. +...+..+ ..++|+++
T Consensus 317 ~l~d~riv~~GAGaA--gigia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~-l~~~k~~~A~~~~~~~~L~ea 393 (605)
T 1o0s_A 317 LVSQEKYLFFGAGAA--STGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKE-MNPRHVQFAKDMPETTSILEV 393 (605)
T ss_dssp CGGGCCEEEECCSHH--HHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSS-CCGGGTTTCBSSCCCCCHHHH
T ss_pred ChhhcEEEEECCCHH--HHHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCCC-chHHHHHHHhhcCCCCCHHHH
Confidence 999999999999999 9999999999654 3456888 9999999974 554 55555555 35789999
Q ss_pred cCC--CceEEeecC-CCcchh
Q psy14377 771 LSD--NTILFQGSG-EGTASV 788 (848)
Q Consensus 771 ~~~--~~~~~~~s~-~~~~~~ 788 (848)
+++ +|+|+|+|+ .|+-+-
T Consensus 394 v~~vkpdVlIG~S~~~g~ft~ 414 (605)
T 1o0s_A 394 IRAARPGALIGASTVRGAFNE 414 (605)
T ss_dssp HHHHCCSEEEECSSCTTCSCH
T ss_pred HhhcCCCEEEEecCCCCCCCH
Confidence 995 999999997 566543
No 4
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*
Probab=100.00 E-value=3.4e-68 Score=600.71 Aligned_cols=253 Identities=33% Similarity=0.521 Sum_probs=232.0
Q ss_pred cccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccch
Q psy14377 174 KGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGE 250 (848)
Q Consensus 174 ~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGa 250 (848)
.-..|+ ++..|++||++.++||++++ +|++.+|+| |||||+|+ ||||+||+|++|++|+||||||+|||+
T Consensus 258 v~~~fG--p~~~I~~EDf~~p~af~il~----ryr~~ipvFnDDiqGTA~V~-lAgllnAlki~gk~l~d~riv~~GAGa 330 (605)
T 1o0s_A 258 CTKKYG--QKTLIQFEDFANPNAFRLLD----KYQDKYTMFNDDIQGTASVI-VAGLLTCTRVTKKLVSQEKYLFFGAGA 330 (605)
T ss_dssp HHHHHC--TTCEEEECSCCHHHHHHHHH----HHTTTSEEEEHHHHHHHHHH-HHHHHHHHHHHCCCGGGCCEEEECCSH
T ss_pred HHHHhC--CCcEeeHhhcCCccHHHHHH----HhccCCCeeCcccchHHHHH-HHHHHHHHHHhCCChhhcEEEEECCCH
Confidence 344453 56679999999999999988 555689999 99999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhhhhccccccHHHHhhh
Q psy14377 251 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQAL 330 (848)
Q Consensus 251 Ag~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~ 330 (848)
||+|||+||+.+|+++|+|++||+++|||||++|||+++|++ |+++|.+||+++++.
T Consensus 331 Agigia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~--l~~~k~~~A~~~~~~--------------------- 387 (605)
T 1o0s_A 331 ASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKE--MNPRHVQFAKDMPET--------------------- 387 (605)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSS--CCGGGTTTCBSSCCC---------------------
T ss_pred HHHHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCCC--chHHHHHHHhhcCCC---------------------
Confidence 999999999999999999999999999999999999999974 999999999864210
Q ss_pred cccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCCCCCCcccccccHHHH
Q psy14377 331 GIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTA 410 (848)
Q Consensus 331 ~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~a 410 (848)
-+|.+|
T Consensus 388 --------------------------------------------------------------------------~~L~ea 393 (605)
T 1o0s_A 388 --------------------------------------------------------------------------TSILEV 393 (605)
T ss_dssp --------------------------------------------------------------------------CCHHHH
T ss_pred --------------------------------------------------------------------------CCHHHH
Confidence 047788
Q ss_pred HcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCC
Q psy14377 411 LAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPF 490 (848)
Q Consensus 411 l~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf 490 (848)
++++|| |||||+ |++||+|||||||+||++|+|||||||||||+++||+||||++||+|+|||||||||
T Consensus 394 v~~vkp------dVlIG~-----S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivATGspF 462 (605)
T 1o0s_A 394 IRAARP------GALIGA-----STVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPF 462 (605)
T ss_dssp HHHHCC------SEEEEC-----SSCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHTTTSCCEEEESSCC
T ss_pred HhhcCC------CEEEEe-----cCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHhhccCCEEEEECCCC
Confidence 999999 788997 899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377 491 DPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW 553 (848)
Q Consensus 491 ~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw 553 (848)
+||+|+||+++|+|+||++ .|||+|+|++.+++. +++++|+++ ..+.|++.
T Consensus 463 ~pV~~~Grs~~pnQ~NN~l-----iFPGi~lGal~~~A~-~Itd~M~~a------AA~aLA~~ 513 (605)
T 1o0s_A 463 PNFELNGHTYKPGQGNNAY-----IFPGVALGTILFQIR-HVDNDLFLL------AAKKVASC 513 (605)
T ss_dssp CCEEETTEEECCEECCGGG-----THHHHHHHHHHHTBS-CCCHHHHHH------HHHHHHHT
T ss_pred CCeeECCEEecccccccee-----eccchhhhhhhcCCe-EcCHHHHHH------HHHHHHhh
Confidence 9999999999999999995 479999999999985 799999997 77888876
No 5
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=100.00 E-value=8.9e-68 Score=594.34 Aligned_cols=320 Identities=43% Similarity=0.568 Sum_probs=267.6
Q ss_pred ccccccccCC--cccccccc---CCc------------Ccc----CCcCccceeeec----ccChhhHHHH-H--Hhhcc
Q psy14377 107 QRDFLSSWLN--RGPCLNCW---GKR------------DFE----QDKQGISYSIHA----SLGIADLCVM-A--MQKEG 158 (848)
Q Consensus 107 ~~piifA~sn--~~~~i~at---G~~------------~fd----ypnQ~Nnv~vfp----~Lgl~~m~~~-A--~~ala 158 (848)
++.+.++|+| +.+|...+ -+| .++ .|.+.|-|+|++ .|||+|+++. + +.+|+
T Consensus 83 ~e~lpivYTP~V~~ac~~~s~i~~~p~g~yis~~d~~~i~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G~~g~~ipvGKl 162 (555)
T 1gq2_A 83 ERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKL 162 (555)
T ss_dssp HHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHHTSSCSCCCEEEEECSSSCGGGCCCGGGGGHHHHHHH
T ss_pred HHhcCcccCchHHHHHHHHHHHhcChhhhhcccCCHHHHHHHHhcCCCCCcEEEEEEccccccccCCCCCCccccchhHH
Confidence 4678899999 66665533 222 111 356779999999 7899888872 2 12222
Q ss_pred C------------------Ch---hhHhhh---------------------hhcccccccccCCCCCCCCcccccccccc
Q psy14377 159 T------------------SE---QDARDK---------------------IWMVDSKGLIVKDRPEGGVTGHKVHYAKK 196 (848)
Q Consensus 159 ~------------------~v---~d~~~~---------------------ay~~~~~G~lYPkppd~gIr~edIavAk~ 196 (848)
. .+ .++-++ +.+|+..-..|+ ++..|++||++.++|
T Consensus 163 ~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~DplYlG~r~~Rv~g~eyd~fvdefv~av~~~fG--p~~~I~~EDf~~~~a 240 (555)
T 1gq2_A 163 ALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYG--MNCLIQFEDFANANA 240 (555)
T ss_dssp HHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHC--TTCEEEECSCCHHHH
T ss_pred HHhHhccCCChhheeeeEeecCCCchhhcCCCccCCcCCCCCchHHHHHHHHHHHHHHHHhhC--CCcEEeecccCCccH
Confidence 1 11 011111 122333444454 566799999999999
Q ss_pred chhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhh
Q psy14377 197 HAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDA 273 (848)
Q Consensus 197 fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA 273 (848)
|++++ +|++.+|+| |||||+|+ ||||+||+|++|++|+||||||+|||+||+|||+||+.+|+++|+|++||
T Consensus 241 f~il~----ryr~~ipvFnDDiqGTa~V~-lAgllnAlki~gk~l~d~riv~~GAGaAg~gia~ll~~~~~~~G~~~eeA 315 (555)
T 1gq2_A 241 FRLLH----KYRNKYCTFNDDIQGTASVA-VAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEA 315 (555)
T ss_dssp HHHHH----HHTTTSEEEETTTHHHHHHH-HHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHH----HHhccCCEecCccchHHHHH-HHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99988 556689999 99999999 99999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhcc
Q psy14377 274 RDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLN 353 (848)
Q Consensus 274 ~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~ 353 (848)
+++|||||++|||+++|++ ++++|.+||+++++.
T Consensus 316 ~~~i~~~D~~Gli~~~r~~--l~~~k~~~A~~~~~~-------------------------------------------- 349 (555)
T 1gq2_A 316 IKRIWMVDSKGLIVKGRAS--LTPEKEHFAHEHCEM-------------------------------------------- 349 (555)
T ss_dssp HTTEEEEETTEECBTTCSS--CCTTGGGGCBSCCCC--------------------------------------------
T ss_pred hCcEEEEECCCeeeCCCCC--chHHHHHHHhhcCCC--------------------------------------------
Confidence 9999999999999999974 999999999864210
Q ss_pred ccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccc
Q psy14377 354 VDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRA 433 (848)
Q Consensus 354 ~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~ 433 (848)
-+|.+|++++|| |||||+
T Consensus 350 ---------------------------------------------------~~L~eav~~vkp------~vlIG~----- 367 (555)
T 1gq2_A 350 ---------------------------------------------------KNLEDIVKDIKP------TVLIGV----- 367 (555)
T ss_dssp ---------------------------------------------------CCHHHHHHHHCC------SEEEEC-----
T ss_pred ---------------------------------------------------CCHHHHHhhcCC------CEEEEe-----
Confidence 047788999999 788997
Q ss_pred cCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCccc-CCeEEecccchhhccCC
Q psy14377 434 AAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTY-KGKTFTPGQEYVVELMP 512 (848)
Q Consensus 434 S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y-~g~~~~~~q~nn~e~lP 512 (848)
|++||+|||||||+|+++|+|||||||||||+++||+||||++||+|+|||||||||+||+| +||+++|+|+||++
T Consensus 368 S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivATGspf~pv~~~~Grs~~pnQ~NN~l--- 444 (555)
T 1gq2_A 368 AAIGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQGNNSY--- 444 (555)
T ss_dssp SCCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHHTTTCCEEEESSCCCCEECTTSCEECCEECCGGG---
T ss_pred cCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCccCcCHHHHHHhccCCEEEEeCCCCCCeeecCCcEecccccccee---
Confidence 88999999999999999999999999999999999999999999999999999999999999 99999999999995
Q ss_pred eEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377 513 IVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW 553 (848)
Q Consensus 513 vvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw 553 (848)
.|||+|+|++.+++. +++++|+++ ..+.|++.
T Consensus 445 --iFPGi~~Gal~~~A~-~Itd~M~~a------AA~alA~~ 476 (555)
T 1gq2_A 445 --VFPGVALGVISCGLK-HIGDDVFLT------TAEVIAQE 476 (555)
T ss_dssp --THHHHHHHHHHHTCS-SCCHHHHHH------HHHHHHHT
T ss_pred --eccchhhhhHhcCCe-ECCHHHHHH------HHHHHHhc
Confidence 479999999999985 799999997 77888876
No 6
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Probab=100.00 E-value=9.4e-68 Score=595.65 Aligned_cols=323 Identities=32% Similarity=0.461 Sum_probs=269.8
Q ss_pred ccccccccCC--ccccccc---cCCc--Cc--------------cCCcCccceeeec----ccChhhHHHHHH-h--hcc
Q psy14377 107 QRDFLSSWLN--RGPCLNC---WGKR--DF--------------EQDKQGISYSIHA----SLGIADLCVMAM-Q--KEG 158 (848)
Q Consensus 107 ~~piifA~sn--~~~~i~a---tG~~--~f--------------dypnQ~Nnv~vfp----~Lgl~~m~~~A~-~--ala 158 (848)
++.+.++|+| +.+|... --+| .| .+|.+.|-|+|++ .|||+|+++.++ - +|+
T Consensus 85 ~e~lpivYTP~Vg~ac~~~s~i~~~p~g~ylsi~d~~~i~~~l~n~~~~~v~v~VVTDG~~ILGLGD~G~~gm~ipvGKl 164 (564)
T 1pj3_A 85 ESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKL 164 (564)
T ss_dssp HHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHTTCSCSCCCEEEEECSSSCTTSCCCGGGGGHHHHHHH
T ss_pred HHhCCeeeCccHHHHHHHHHHHhcCcccccccccCHHHHHHHHHhCCCCCceEEEEEcccccccCCCCCCCcccceehHH
Confidence 4568889999 6666542 2222 22 2688899999999 799988888762 1 111
Q ss_pred C--------C----------h--------hh----------------HhhhhhcccccccccCCCCCCCCcccccccccc
Q psy14377 159 T--------S----------E--------QD----------------ARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKK 196 (848)
Q Consensus 159 ~--------~----------v--------~d----------------~~~~ay~~~~~G~lYPkppd~gIr~edIavAk~ 196 (848)
. . + .| ....+.+|+..-..|+ ++..|++||++.++|
T Consensus 165 ~Ly~~~aGIdP~~~lPI~lDvgTnn~~LL~DPlYlG~r~~Rv~g~eYd~fvdefv~av~~~fG--~~~~I~~EDf~~~~a 242 (564)
T 1pj3_A 165 CLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYG--RNTLIQFEDFGNHNA 242 (564)
T ss_dssp HHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHC--TTCEEEECSCCHHHH
T ss_pred HHHHhccCCChhheeeeEeecCcCchhhccCCcccCcCCCCCchhhHHHHHHHHHHHHHHHcC--CCcEEeehhcCCccH
Confidence 0 0 1 01 0001122333333444 555699999999999
Q ss_pred chhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhh
Q psy14377 197 HAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDA 273 (848)
Q Consensus 197 fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA 273 (848)
|++++ +|++++|+| |||||+|+ ||||+||+|++|++|+||||||+|||+||+|||+||+.+|+++|+|++||
T Consensus 243 f~il~----ryr~~ipvFnDDiqGTa~V~-lAgllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA 317 (564)
T 1pj3_A 243 FRFLR----KYREKYCTFNDDIQGTAAVA-LAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEA 317 (564)
T ss_dssp HHHHH----HHTTTSSEEEHHHHHHHHHH-HHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHH----HhccCCCEeCCCCchHHHHH-HHHHHHHHHHhCCcHhHcEEEEeCCCHHHHHHHHHHHHHHHHcCCChHHh
Confidence 99988 556689999 99999999 99999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhcc
Q psy14377 274 RDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLN 353 (848)
Q Consensus 274 ~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~ 353 (848)
+++|||||++|||+++|.+ +++++|.+||+++++..
T Consensus 318 ~~~i~~~D~~Gli~~~r~~-~l~~~k~~~A~~~~~~~------------------------------------------- 353 (564)
T 1pj3_A 318 QKKIWMFDKYGLLVKGRKA-KIDSYQEPFTHSAPESI------------------------------------------- 353 (564)
T ss_dssp HHTEEEEETTEECBTTCSS-CCCTTTGGGCBCCCSSC-------------------------------------------
T ss_pred hCcEEEEeCCCeEECCCcc-cchHHHHHHHHhcCccc-------------------------------------------
Confidence 9999999999999999933 49999999998653200
Q ss_pred ccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccc
Q psy14377 354 VDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRA 433 (848)
Q Consensus 354 ~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~ 433 (848)
+.+|.+|++++|| |||||+
T Consensus 354 --------------------------------------------------~~~L~eav~~vkp------~vlIG~----- 372 (564)
T 1pj3_A 354 --------------------------------------------------PDTFEDAVNILKP------STIIGV----- 372 (564)
T ss_dssp --------------------------------------------------CSSHHHHHHHHCC------SEEEEC-----
T ss_pred --------------------------------------------------cCCHHHHHhhcCC------CEEEEe-----
Confidence 1147889999999 788997
Q ss_pred cCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCccc-CCeEEecccchhhccCC
Q psy14377 434 AAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTY-KGKTFTPGQEYVVELMP 512 (848)
Q Consensus 434 S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y-~g~~~~~~q~nn~e~lP 512 (848)
|++||+|||||||+|+++|+|||||||||||+++||+||||++||+|+|||||||||+||+| +||+|+|+|+||++
T Consensus 373 S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivATGspf~pv~~~~G~~~~pnQ~NN~l--- 449 (564)
T 1pj3_A 373 AGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVY--- 449 (564)
T ss_dssp CCSSCCSCHHHHHHHHHHCSSCEEEECCSSGGGCSCCHHHHHHHTTTCCEEEESSCCCCEECTTSCEECCEECCGGG---
T ss_pred CCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCccCcCHHHHHhhccCCEEEEeCCCCCceeecCCceecccccceee---
Confidence 89999999999999999999999999999999999999999999999999999999999999 99999999999995
Q ss_pred eEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377 513 IVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW 553 (848)
Q Consensus 513 vvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw 553 (848)
.|||+|+|++.+++. +++++|+++ ..+.|++.
T Consensus 450 --iFPGi~~Gal~~~A~-~Itd~M~~a------AA~aLA~~ 481 (564)
T 1pj3_A 450 --IFPGVALAVILCNTR-HISDSVFLE------AAKALTSQ 481 (564)
T ss_dssp --THHHHHHHHHHTTCS-CCCHHHHHH------HHHHHHTT
T ss_pred --eccchhhhhHhcCCe-ECCHHHHHH------HHHHHHhh
Confidence 479999999999985 799999997 77888886
No 7
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}
Probab=100.00 E-value=6.6e-63 Score=546.44 Aligned_cols=237 Identities=27% Similarity=0.361 Sum_probs=209.1
Q ss_pred ccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCCC-CCCC
Q psy14377 503 GQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGA-YGMG 581 (848)
Q Consensus 503 ~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~-~gmg 581 (848)
...+|.++||++|||||+++|+.+. +|+++++++..+|+ +++|||||||||||||+|+ +||+
T Consensus 53 ~~~~~~~dLslaYTPgVa~~c~~i~-------------~dp~~~~~yt~kgn----~VaVVTDG~aILGLGDiG~~agmp 115 (487)
T 3nv9_A 53 CTLAGFNWFNAYYTPGVSRISTNIR-------------DNNDSSLFYSLRGN----FVGVVSDSTRVLGDGDVTPPGGLG 115 (487)
T ss_dssp SCCSSGGGHHHHSTTTHHHHHHHHH-------------HCGGGHHHHSGGGG----EEEEEECSSSBGGGBCCCGGGGHH
T ss_pred CCCCCHHHCeeeeCcchHHHHHHHH-------------hChHHHhhhcccCC----EEEEEEcCceeeeccccccccCCc
Confidence 3467889999999999999999943 45667777777775 6999999999999999999 5899
Q ss_pred ccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCC
Q psy14377 582 IPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFA 661 (848)
Q Consensus 582 IpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~ 661 (848)
||+||++|||+||||| |||||||+||+| +++|| ++|+ |||+++.++||. ||||||+
T Consensus 116 ImeGKl~Lyk~~aGId---~lPI~LD~gt~~--~~~d~---------------defv-e~v~~~~P~fG~---InlEDf~ 171 (487)
T 3nv9_A 116 VMEGKALLMKYLGGID---AVPICIDSKNKE--GKNDP---------------DAVI-EFVQRIQHTFGA---INLEDIS 171 (487)
T ss_dssp HHHHHHHHHHHHHCCE---EEEEECCCBCTT--SCBCH---------------HHHH-HHHHHHGGGCSE---EEECSCC
T ss_pred hhhhHHHHHHhcCCCc---eeeeEEeCCCcc--ccCCH---------------HHHH-HHHHHhCCCCCe---ecHhhcC
Confidence 9999999999999999 999999999755 46675 7765 799999999987 9999999
Q ss_pred CcchHHHHHHHcc--cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcc--cccc
Q psy14377 662 NHSAFRFLDTYRN--RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRI--TKTR 737 (848)
Q Consensus 662 ~~naf~lL~ryr~--~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~--~~~~ 737 (848)
+||||++|+|||+ +||||||||||||+|+||||+||+|++|++|+|+||||+|||+| |+|||+||+..++ ++..
T Consensus 172 ap~af~il~ryr~~~~ipvFnDD~qGTA~V~lAgllnAlki~gk~l~d~riV~~GAGaA--Gigia~ll~~~G~~~~~i~ 249 (487)
T 3nv9_A 172 QPNCYKILDVLRESCDIPVWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSS--NTTCLRLIVTAGADPKKIV 249 (487)
T ss_dssp TTHHHHHHHHHHHHCSSCEEETTTHHHHHHHHHHHHHHHHHHTCCGGGCCEEEECCSHH--HHHHHHHHHHTTCCGGGEE
T ss_pred CchHHHHHHHHHhhccCCccccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHH--HHHHHHHHHHcCCCcccEE
Confidence 9999999999999 58999999999999999999999999999999999999999999 9999999999999 6778
Q ss_pred ccc-CceecCCCCCCc-----hHH-Hhhhccc---cchhhccccCCCceEEeecCC
Q psy14377 738 LSD-NTILFQGAGEGT-----ASV-AIAGLLA---SLRITKTRLSDNTILFQGSGE 783 (848)
Q Consensus 738 ~~d-~g~i~~~r~~~~-----~~~-~~~~~~~---~~r~~~~~~~~~~~~~~~s~~ 783 (848)
++| +|+|+++|+. + +++ ....-.| ..++|+++++++|+|+|+|..
T Consensus 250 l~D~~Gli~~~R~~-l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S~~ 304 (487)
T 3nv9_A 250 MFDSKGSLHNGRED-IKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLSTP 304 (487)
T ss_dssp EEETTEECCTTCHH-HHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECCCS
T ss_pred EEeccccccCCcch-hhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEeccc
Confidence 999 9999999953 3 222 2222333 578999999999999999944
No 8
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}
Probab=100.00 E-value=9.8e-58 Score=505.27 Aligned_cols=337 Identities=20% Similarity=0.198 Sum_probs=259.4
Q ss_pred CChhhhhhcccCCCCCCHHHHhccc-CCCchhh--hhccC-CccccccccCC--ccccccccCCc--CccCCcCccceee
Q psy14377 69 VTGHKVHYAKKHAPVKNLADVVKTV-KPSILIE--ELKGL-SQRDFLSSWLN--RGPCLNCWGKR--DFEQDKQGISYSI 140 (848)
Q Consensus 69 l~~~k~~~a~~~~~~~tL~ea~~~s-~~~v~~g--~vk~M-~~~piifA~sn--~~~~i~atG~~--~fdypnQ~Nnv~v 140 (848)
+++.++.-|++. . --++|++.. ++.=.++ --+++ +++++.++|+| +.+|..+.-+| .|+|++++|.|+|
T Consensus 19 ~~~~~~~~~~~~-~--~~~~al~~h~~~~GKi~v~~~~~~~~~~dLslaYTPgVa~~c~~i~~dp~~~~~yt~kgn~VaV 95 (487)
T 3nv9_A 19 LSQEQRAVAKTQ-F--YKELAEKVHKFYKGKIQIMPKCTLAGFNWFNAYYTPGVSRISTNIRDNNDSSLFYSLRGNFVGV 95 (487)
T ss_dssp CCHHHHHHHHHH-H--HHHHHHHHHHHHTSSEEEEECSCCSSGGGHHHHSTTTHHHHHHHHHHCGGGHHHHSGGGGEEEE
T ss_pred CChhHhhhccch-h--hHHHHHHHhhhCCCeEEEEecCCCCCHHHCeeeeCcchHHHHHHHHhChHHHhhhcccCCEEEE
Confidence 555565555433 1 126677631 0100111 33445 99999999999 88998887777 7889999999999
Q ss_pred ec----ccChhhHHHHH----HhhccC---------------Chh-hH--hhhhhcccccccccCCCCCCCCcccccccc
Q psy14377 141 HA----SLGIADLCVMA----MQKEGT---------------SEQ-DA--RDKIWMVDSKGLIVKDRPEGGVTGHKVHYA 194 (848)
Q Consensus 141 fp----~Lgl~~m~~~A----~~ala~---------------~v~-d~--~~~ay~~~~~G~lYPkppd~gIr~edIavA 194 (848)
++ .|||+|+++.| |++++. .+. +. ...+.+++..-.++| .|++|++||++.+
T Consensus 96 VTDG~aILGLGDiG~~agmpImeGKl~Lyk~~aGId~lPI~LD~gt~~~~~d~defve~v~~~~P--~fG~InlEDf~ap 173 (487)
T 3nv9_A 96 VSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGIDAVPICIDSKNKEGKNDPDAVIEFVQRIQH--TFGAINLEDISQP 173 (487)
T ss_dssp EECSSSBGGGBCCCGGGGHHHHHHHHHHHHHHHCCEEEEEECCCBCTTSCBCHHHHHHHHHHHGG--GCSEEEECSCCTT
T ss_pred EEcCceeeeccccccccCCchhhhHHHHHHhcCCCceeeeEEeCCCccccCCHHHHHHHHHHhCC--CCCeecHhhcCCc
Confidence 99 89999999865 344441 221 00 011224445666778 7778999999999
Q ss_pred ccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChh
Q psy14377 195 KKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQ 271 (848)
Q Consensus 195 k~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~ 271 (848)
+||++++++.+++ .+||| |||||+|+ ||||+||+|++|++|+||||||+|||+||+|||+||+. .|+|+
T Consensus 174 ~af~il~ryr~~~--~ipvFnDD~qGTA~V~-lAgllnAlki~gk~l~d~riV~~GAGaAGigia~ll~~----~G~~~- 245 (487)
T 3nv9_A 174 NCYKILDVLRESC--DIPVWHDDQQGTASVT-LAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVT----AGADP- 245 (487)
T ss_dssp HHHHHHHHHHHHC--SSCEEETTTHHHHHHH-HHHHHHHHHHHTCCGGGCCEEEECCSHHHHHHHHHHHH----TTCCG-
T ss_pred hHHHHHHHHHhhc--cCCccccccchHHHHH-HHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHH----cCCCc-
Confidence 9999999888875 79999 99999999 99999999999999999999999999999999999986 49985
Q ss_pred hhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhh
Q psy14377 272 DARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCK 351 (848)
Q Consensus 272 eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~ 351 (848)
++|||||++|||+++|++ +++++ ++.++..
T Consensus 246 ---~~i~l~D~~Gli~~~R~~--l~~~~-~~~~k~~-------------------------------------------- 275 (487)
T 3nv9_A 246 ---KKIVMFDSKGSLHNGRED--IKKDT-RFYRKWE-------------------------------------------- 275 (487)
T ss_dssp ---GGEEEEETTEECCTTCHH--HHHCG-GGHHHHH--------------------------------------------
T ss_pred ---ccEEEEeccccccCCcch--hhhhc-ccHHHHH--------------------------------------------
Confidence 999999999999999953 54433 1111100
Q ss_pred ccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccc
Q psy14377 352 LNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWR 431 (848)
Q Consensus 352 ~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~ 431 (848)
|.. . ++++ ...+|.++++++ |||||+
T Consensus 276 --------------~A~----~--------~n~~-----------------~~~~L~eav~~a--------dVlIG~--- 301 (487)
T 3nv9_A 276 --------------ICE----T--------TNPS-----------------KFGSIAEACVGA--------DVLISL--- 301 (487)
T ss_dssp --------------HHH----H--------SCTT-----------------CCCSHHHHHTTC--------SEEEEC---
T ss_pred --------------HHH----h--------cccc-----------------cCCCHHHHHhcC--------CEEEEe---
Confidence 000 0 0000 123689999986 899998
Q ss_pred cccCC-CCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhcc
Q psy14377 432 RAAAI-PQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVEL 510 (848)
Q Consensus 432 ~~S~~-~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~ 510 (848)
|++ ||+|||||||+|+ +||||||||||| |||+||||++ +|++||||||+ ++|+|+||++
T Consensus 302 --S~~~pg~ft~e~V~~Ma---~~PIIFaLSNPt--pEi~pe~A~~--~G~aIvATGrs----------d~PnQ~NN~l- 361 (487)
T 3nv9_A 302 --STPGPGVVKAEWIKSMG---EKPIVFCCANPV--PEIYPYEAKE--AGAYIVATGRG----------DFPNQVNNSV- 361 (487)
T ss_dssp --CCSSCCCCCHHHHHTSC---SSCEEEECCSSS--CSSCHHHHHH--TTCSEEEESCT----------TSSSBCCGGG-
T ss_pred --cccCCCCCCHHHHHhhc---CCCEEEECCCCC--ccCCHHHHHH--hCCEEEEECCC----------CCcccCccee-
Confidence 655 8999999999997 799999999999 7999999998 59999999984 4589999995
Q ss_pred CCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377 511 MPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW 553 (848)
Q Consensus 511 lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw 553 (848)
.|||++++++.+++. +++++|+++ ..+.|++.
T Consensus 362 ----iFPGI~~Gal~~~A~-~Itd~M~~A------AA~ALA~~ 393 (487)
T 3nv9_A 362 ----GFPGILKGALIVRAR-KITDNMAIA------ASRALAEF 393 (487)
T ss_dssp ----THHHHHHHHHHTTCS-SCCHHHHHH------HHHHHHHH
T ss_pred ----EcchhhHHHHHcCCc-ccCHHHHHH------HHHHHHhh
Confidence 479999999999985 799999996 56667664
No 9
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=100.00 E-value=2.4e-57 Score=496.81 Aligned_cols=234 Identities=26% Similarity=0.364 Sum_probs=206.3
Q ss_pred ccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCCCC-CCC
Q psy14377 503 GQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAY-GMG 581 (848)
Q Consensus 503 ~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~-gmg 581 (848)
....|.++||++|||||+++|+.++ + |+++++ +|+.+.++++|||||+|||||||+|++ ||+
T Consensus 28 ~~~~~~~~l~i~YtP~V~~~c~~i~---~----------~p~~v~----~~t~~~~~V~VvTdG~~iLGLGD~G~~aG~p 90 (398)
T 2a9f_A 28 VDIKTKHDLSIAYTPGVASVSSAIA---K----------DKTLAY----DLTTKKNTVAVISDGTAVLGLGDIGPEAAMP 90 (398)
T ss_dssp SCCSSHHHHHHHSTTTTHHHHHHHH---H----------CGGGHH----HHSGGGTEEEEEECSSSCTTSCCCCHHHHHH
T ss_pred cccCCHHHCeEEECchHHHHHHHHH---h----------CHHHHH----HhcccCCEEEEEECCccccCCCCcccccCCc
Confidence 3467889999999999999999954 3 445555 466666799999999999999999998 899
Q ss_pred ccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCc-eeeeeecC
Q psy14377 582 IPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQH-VLIQFEDF 660 (848)
Q Consensus 582 IpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~-~~IqfEDf 660 (848)
|++||+.||++||||| |+|||||+|| +||||+++++.| |. ..||||||
T Consensus 91 I~eGK~~Lf~~~agid---~~pi~Ldv~~---------------------------~dEfv~~v~~~~-p~F~~I~lED~ 139 (398)
T 2a9f_A 91 VMEGKAALFKAFAGVD---AIPIVLDTKD---------------------------TEEIISIVKALA-PTFGGINLEDI 139 (398)
T ss_dssp HHHHHHHHHHHHSSCE---EEEEECCCCC---------------------------HHHHHHHHHHHG-GGCSEEEECSC
T ss_pred chhCHHHHHHhccCCc---eeeeEeCCCC---------------------------HHHHHHHHHHcC-CceeEeccccC
Confidence 9999999999999999 9999999984 578888888777 66 67999999
Q ss_pred CCcchHHHHHHHccc--CceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccc
Q psy14377 661 ANHSAFRFLDTYRNR--YCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRL 738 (848)
Q Consensus 661 ~~~naf~lL~ryr~~--~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~ 738 (848)
++||||++|+|||++ +|||||||||||+|++||++||+|++|++++|+||||+|||+| |+|||++++.++++++.+
T Consensus 140 ~~p~~f~il~~~r~~~~ipvf~DDiqGTa~V~lAall~al~l~g~~l~d~kVVi~GAGaA--G~~iA~ll~~~Ga~~I~v 217 (398)
T 2a9f_A 140 SAPRCFEIEQRLIKECHIPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSA--GLSITRKLLAAGATKVTV 217 (398)
T ss_dssp CTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHTTTCCTTSCEEEEECCSHH--HHHHHHHHHHHTCCEEEE
T ss_pred CChHHHHHHHHhhhcCCcceecchhhhHHHHHHHHHHHHHHHhCCCCCccEEEEECCCHH--HHHHHHHHHHcCCCeEEE
Confidence 999999999999997 9999999999999999999999999999999999999999999 999999999999989999
Q ss_pred cc-CceecCCCCCCchH-HHhhhcccc----chhhccccCCCceEEeecCCCcc
Q psy14377 739 SD-NTILFQGAGEGTAS-VAIAGLLAS----LRITKTRLSDNTILFQGSGEGTA 786 (848)
Q Consensus 739 ~d-~g~i~~~r~~~~~~-~~~~~~~~~----~r~~~~~~~~~~~~~~~s~~~~~ 786 (848)
+| +|+|+++|+++++. +...+-.+. .++|+++++++|+|+|+|+.|.-
T Consensus 218 ~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~Sapgl~ 271 (398)
T 2a9f_A 218 VDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVSAPGVL 271 (398)
T ss_dssp EETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECCSTTCC
T ss_pred EECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecCCCCCC
Confidence 99 99999999545554 333344343 67899999999999999986653
No 10
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=100.00 E-value=1.1e-54 Score=475.13 Aligned_cols=233 Identities=24% Similarity=0.353 Sum_probs=205.7
Q ss_pred ccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCCCC-CCC
Q psy14377 503 GQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAY-GMG 581 (848)
Q Consensus 503 ~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~-gmg 581 (848)
....|.++||++|||||+++|+.++ + |+++++ +|+.+.++++|||||+|||||||+|++ ||+
T Consensus 32 ~~~~~~~~l~i~YtP~V~~~c~~~~---~----------~p~~v~----~~t~~~~~V~VvTdg~~vLGlGD~G~~ag~p 94 (388)
T 1vl6_A 32 VEKVDRETLSLLYTPGVADVARACA---E----------DPEKTY----VYTSRWNTVAVVSDGSAVLGLGNIGPYGALP 94 (388)
T ss_dssp CSCCCHHHHHHHSTTTHHHHHHHHH---H----------CGGGHH----HHSGGGGEEEEEECSTTBTTTBSCCHHHHHH
T ss_pred eecCCHHHCeEEECchHHHHHHHHH---h----------CHHHHH----hhcccCCeEEEEECCccccCCCccccccCCc
Confidence 3467889999999999999999954 3 444555 466667799999999999999999998 899
Q ss_pred ccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCc-eeeeeecC
Q psy14377 582 IPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQH-VLIQFEDF 660 (848)
Q Consensus 582 IpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~-~~IqfEDf 660 (848)
|++||+.||++||||| |+|||||+|| +||||+++++.| |. ..||||||
T Consensus 95 I~egK~~Lf~~~agid---~~pi~ldv~~---------------------------~dE~v~~vk~~~-p~f~~i~lED~ 143 (388)
T 1vl6_A 95 VMEGKAFLFKAFADID---AFPICLSESE---------------------------EEKIISIVKSLE-PSFGGINLEDI 143 (388)
T ss_dssp HHHHHHHHHHHHHCCE---EEEEECSCCC---------------------------HHHHHHHHHHTG-GGCSEEEECSC
T ss_pred chhCHHHHHHhccCCc---eEeEEeCCCC---------------------------HHHHHHHHHHcC-CcceEeCHhhc
Confidence 9999999999999999 9999999984 578888887777 66 67999999
Q ss_pred CCcchHHHHHHHccc--CceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccc
Q psy14377 661 ANHSAFRFLDTYRNR--YCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRL 738 (848)
Q Consensus 661 ~~~naf~lL~ryr~~--~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~ 738 (848)
++||||++|+|||++ |||||||||||++|++||++||+|++|++++|+||||+|||+| |+++|++|+.++++++.+
T Consensus 144 ~~p~af~il~r~r~~~~Ipvf~DDiqGTasV~lAal~~A~~i~g~~l~~~kVVv~GAGaA--G~~iAkll~~~G~~~I~v 221 (388)
T 1vl6_A 144 GAPKCFRILQRLSEEMNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAA--GYNIVKFLLDLGVKNVVA 221 (388)
T ss_dssp CTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHHHTCCTTTCEEEEECCSHH--HHHHHHHHHHHTCCEEEE
T ss_pred CCHHHHHHHHHhhhhcCcceeccccccHHHHHHHHHHHHHHHhCCCCCCcEEEEECCCHH--HHHHHHHHHhCCCCeEEE
Confidence 999999999999996 9999999999999999999999999999999999999999999 999999999999989999
Q ss_pred cc-CceecCCCCCC-chH-HHhhhcccc----chhhccccCCCceEEeecCCCc
Q psy14377 739 SD-NTILFQGAGEG-TAS-VAIAGLLAS----LRITKTRLSDNTILFQGSGEGT 785 (848)
Q Consensus 739 ~d-~g~i~~~r~~~-~~~-~~~~~~~~~----~r~~~~~~~~~~~~~~~s~~~~ 785 (848)
+| +|+|+++|..+ ++. +...+..+. .++|+++++++|+|+|+|+.|.
T Consensus 222 ~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~Sap~l 275 (388)
T 1vl6_A 222 VDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNI 275 (388)
T ss_dssp EETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSCSSC
T ss_pred EECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEEeCCCCc
Confidence 99 99999999753 554 333344343 6789999999999999997443
No 11
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=100.00 E-value=3.2e-53 Score=464.38 Aligned_cols=294 Identities=20% Similarity=0.283 Sum_probs=246.1
Q ss_pred CccccccccCC--ccccccccCCc--CccCCcCccceeeec----ccChhhHHHHHH----hhccC--------------
Q psy14377 106 SQRDFLSSWLN--RGPCLNCWGKR--DFEQDKQGISYSIHA----SLGIADLCVMAM----QKEGT-------------- 159 (848)
Q Consensus 106 ~~~piifA~sn--~~~~i~atG~~--~fdypnQ~Nnv~vfp----~Lgl~~m~~~A~----~ala~-------------- 159 (848)
+++++.++|+| +.+|....-+| .|+||+++|.|+|.+ +||++|++..|+ ++++.
T Consensus 32 ~~~~l~i~YtP~V~~~c~~i~~~p~~v~~~t~~~~~V~VvTdG~~iLGLGD~G~~aG~pI~eGK~~Lf~~~agid~~pi~ 111 (398)
T 2a9f_A 32 TKHDLSIAYTPGVASVSSAIAKDKTLAYDLTTKKNTVAVISDGTAVLGLGDIGPEAAMPVMEGKAALFKAFAGVDAIPIV 111 (398)
T ss_dssp SHHHHHHHSTTTTHHHHHHHHHCGGGHHHHSGGGTEEEEEECSSSCTTSCCCCHHHHHHHHHHHHHHHHHHSSCEEEEEE
T ss_pred CHHHCeEEECchHHHHHHHHHhCHHHHHHhcccCCEEEEEECCccccCCCCcccccCCcchhCHHHHHHhccCCceeeeE
Confidence 88899999999 88886666666 677999999999999 799999998753 33331
Q ss_pred -ChhhHhhhhhcccccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhC
Q psy14377 160 -SEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITK 235 (848)
Q Consensus 160 -~v~d~~~~ay~~~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg 235 (848)
.+.+.+ .+++..-.++| .|++|++|+++.++||++++++.+.+ .+|+| ||||++|+ +||++||+|++|
T Consensus 112 Ldv~~~d---Efv~~v~~~~p--~F~~I~lED~~~p~~f~il~~~r~~~--~ipvf~DDiqGTa~V~-lAall~al~l~g 183 (398)
T 2a9f_A 112 LDTKDTE---EIISIVKALAP--TFGGINLEDISAPRCFEIEQRLIKEC--HIPVFHDDQHGTAIVV-LAAIFNSLKLLK 183 (398)
T ss_dssp CCCCCHH---HHHHHHHHHGG--GCSEEEECSCCTTHHHHHHHHHHHHC--SSCEEEHHHHHHHHHH-HHHHHHHHHTTT
T ss_pred eCCCCHH---HHHHHHHHcCC--ceeEeccccCCChHHHHHHHHhhhcC--CcceecchhhhHHHHH-HHHHHHHHHHhC
Confidence 222222 23445666778 77799999999999999999998863 79999 99999999 999999999999
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhh
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADV 315 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~ 315 (848)
++++|+||||+|||+||++||++++.+ | .++||++|++||++++|.+ +|+++|.+|++.++....
T Consensus 184 ~~l~d~kVVi~GAGaAG~~iA~ll~~~----G------a~~I~v~D~~Gli~~~R~~-~L~~~k~~fa~~~~~~~~---- 248 (398)
T 2a9f_A 184 KSLDEVSIVVNGGGSAGLSITRKLLAA----G------ATKVTVVDKFGIINEQEAA-QLAPHHLDIAKVTNREFK---- 248 (398)
T ss_dssp CCTTSCEEEEECCSHHHHHHHHHHHHH----T------CCEEEEEETTEECCTTCCC-SCCC---CHHHHHSCTTC----
T ss_pred CCCCccEEEEECCCHHHHHHHHHHHHc----C------CCeEEEEECCCcccCCccc-cchHHHHHHhhccCcccc----
Confidence 999999999999999999999999986 8 4899999999999999932 388998888876432000
Q ss_pred hhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCC
Q psy14377 316 VKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGA 395 (848)
Q Consensus 316 ~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~ 395 (848)
T Consensus 249 -------------------------------------------------------------------------------- 248 (398)
T 2a9f_A 249 -------------------------------------------------------------------------------- 248 (398)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHh
Q psy14377 396 YGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAY 475 (848)
Q Consensus 396 ~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~ 475 (848)
+.+|.++++++ |||||+ |+ ||+||+|+||+|+ ++|||||||||| |||+||||+
T Consensus 249 --------~~~L~eav~~A--------DV~IG~-----Sa-pgl~T~EmVk~Ma---~~pIIfalsNPt--~E~~pe~a~ 301 (398)
T 2a9f_A 249 --------SGTLEDALEGA--------DIFIGV-----SA-PGVLKAEWISKMA---ARPVIFAMANPI--PEIYPDEAL 301 (398)
T ss_dssp --------CCSCSHHHHTT--------CSEEEC-----CS-TTCCCHHHHHTSC---SSCEEEECCSSS--CSSCHHHHH
T ss_pred --------hhhHHHHhccC--------CEEEec-----CC-CCCCCHHHHHhhC---CCCEEEECCCCC--ccCCHHHHH
Confidence 11456778876 999997 56 9999999999999 799999999999 899999999
Q ss_pred ccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377 476 VNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW 553 (848)
Q Consensus 476 ~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw 553 (848)
+| |++||||||+ ++|+|+||++ .|||++++++.+++. +++++|+++ ..+.|++.
T Consensus 302 ~~--g~~i~atGrs----------~~p~Q~NN~~-----~FPgi~~Gal~~~a~-~I~d~m~~a------Aa~alA~~ 355 (398)
T 2a9f_A 302 EA--GAYIVGTGRS----------DFPNQINNVL-----AFPGIFRGALDARAK-TITVEMQIA------AAKGIASL 355 (398)
T ss_dssp TT--TCSEEEESCT----------TSSSBCCGGG-----THHHHHHHHHHHTCS-SCCHHHHHH------HHHHHHHT
T ss_pred Hh--CCeEEEeCCC----------CCCCcCCcee-----EcchHHHHHHHcCCc-CCCHHHHHH------HHHHHHhc
Confidence 99 9999999984 5699999995 479999999999985 799999997 77888876
No 12
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=100.00 E-value=4.8e-50 Score=438.61 Aligned_cols=294 Identities=19% Similarity=0.288 Sum_probs=246.8
Q ss_pred CccccccccCC--ccccccccCCc--CccCCcCccceeeec----ccChhhHHHHHH----hhccC--------------
Q psy14377 106 SQRDFLSSWLN--RGPCLNCWGKR--DFEQDKQGISYSIHA----SLGIADLCVMAM----QKEGT-------------- 159 (848)
Q Consensus 106 ~~~piifA~sn--~~~~i~atG~~--~fdypnQ~Nnv~vfp----~Lgl~~m~~~A~----~ala~-------------- 159 (848)
+++++.++|+| +.+|....-+| .|+||+++|.|+|.+ +||++|++..|+ ++++.
T Consensus 36 ~~~~l~i~YtP~V~~~c~~~~~~p~~v~~~t~~~~~V~VvTdg~~vLGlGD~G~~ag~pI~egK~~Lf~~~agid~~pi~ 115 (388)
T 1vl6_A 36 DRETLSLLYTPGVADVARACAEDPEKTYVYTSRWNTVAVVSDGSAVLGLGNIGPYGALPVMEGKAFLFKAFADIDAFPIC 115 (388)
T ss_dssp CHHHHHHHSTTTHHHHHHHHHHCGGGHHHHSGGGGEEEEEECSTTBTTTBSCCHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred CHHHCeEEECchHHHHHHHHHhCHHHHHhhcccCCeEEEEECCccccCCCccccccCCcchhCHHHHHHhccCCceEeEE
Confidence 88899999999 88887666566 677999999999999 899999998753 33332
Q ss_pred -ChhhHhhhhhcccccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhC
Q psy14377 160 -SEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITK 235 (848)
Q Consensus 160 -~v~d~~~~ay~~~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg 235 (848)
.+.+.+ .+++..-.++| .|++|++|+++.++||++++++.+.. .+|+| ||||++|+ +||++||++++|
T Consensus 116 ldv~~~d---E~v~~vk~~~p--~f~~i~lED~~~p~af~il~r~r~~~--~Ipvf~DDiqGTasV~-lAal~~A~~i~g 187 (388)
T 1vl6_A 116 LSESEEE---KIISIVKSLEP--SFGGINLEDIGAPKCFRILQRLSEEM--NIPVFHDDQQGTAVVV-SAAFLNALKLTE 187 (388)
T ss_dssp CSCCCHH---HHHHHHHHTGG--GCSEEEECSCCTTHHHHHHHHHHHHC--SSCEEEHHHHHHHHHH-HHHHHHHHHHHT
T ss_pred eCCCCHH---HHHHHHHHcCC--cceEeCHhhcCCHHHHHHHHHhhhhc--CcceeccccccHHHHH-HHHHHHHHHHhC
Confidence 111211 13344667778 67789999999999999999998864 79999 99999999 999999999999
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCCCCCCCccccccccccCCcchhhhh
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADV 315 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r~~~~l~~~k~~~a~~~~~~~~l~~~ 315 (848)
++++|+||||+|||+||++||++++.. | .++||++|++||++++|.+..|+++|.+|+++.++..
T Consensus 188 ~~l~~~kVVv~GAGaAG~~iAkll~~~----G------~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~----- 252 (388)
T 1vl6_A 188 KKIEEVKVVVNGIGAAGYNIVKFLLDL----G------VKNVVAVDRKGILNENDPETCLNEYHLEIARITNPER----- 252 (388)
T ss_dssp CCTTTCEEEEECCSHHHHHHHHHHHHH----T------CCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTC-----
T ss_pred CCCCCcEEEEECCCHHHHHHHHHHHhC----C------CCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccC-----
Confidence 999999999999999999999999876 8 6899999999999999964227777777776532100
Q ss_pred hhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceecccccCCC
Q psy14377 316 VKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGA 395 (848)
Q Consensus 316 ~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~g~~~~g~ 395 (848)
T Consensus 253 -------------------------------------------------------------------------------- 252 (388)
T 1vl6_A 253 -------------------------------------------------------------------------------- 252 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCCCCCccCCCHHHHh
Q psy14377 396 YGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAY 475 (848)
Q Consensus 396 ~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~E~tpe~a~ 475 (848)
-..+|.++++++ ||+||+ |+ ||+||+|+||+|+ ++||||+||||| |||+||||+
T Consensus 253 -------~~~~L~eav~~A--------DVlIG~-----Sa-p~l~t~emVk~Ma---~~pIIfalSNPt--~E~~p~~a~ 306 (388)
T 1vl6_A 253 -------LSGDLETALEGA--------DFFIGV-----SR-GNILKPEWIKKMS---RKPVIFALANPV--PEIDPELAR 306 (388)
T ss_dssp -------CCSCHHHHHTTC--------SEEEEC-----SC-SSCSCHHHHTTSC---SSCEEEECCSSS--CSSCHHHHH
T ss_pred -------chhhHHHHHccC--------CEEEEe-----CC-CCccCHHHHHhcC---CCCEEEEcCCCC--CCCCHHHHH
Confidence 012577888886 999997 66 9999999999998 799999999999 999999999
Q ss_pred ccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcC
Q psy14377 476 VNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNW 553 (848)
Q Consensus 476 ~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nw 553 (848)
+| |++|||||| +++|||+||++ .|||++++++.+++. ++++|+++ ..+.|++.
T Consensus 307 ~~--g~~i~atGr----------~~~p~Q~NN~~-----~FPgi~~Gal~~~a~--i~~~m~~a------Aa~alA~~ 359 (388)
T 1vl6_A 307 EA--GAFIVATGR----------SDHPNQVNNLL-----AFPGIMKGAVEKRSK--ITKNMLLS------AVEAIARS 359 (388)
T ss_dssp HT--TCSEEEESC----------TTSSSBCCGGG-----THHHHHHHHHHHCSC--CCHHHHHH------HHHHHHHT
T ss_pred Hh--cCeEEEeCC----------CCCCCcCCcee-----EcchHhHHHHhcCCc--cCHHHHHH------HHHHHHhh
Confidence 99 999999998 45699999995 479999999999985 99999997 67777764
No 13
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*
Probab=100.00 E-value=4.3e-39 Score=357.78 Aligned_cols=234 Identities=28% Similarity=0.474 Sum_probs=193.7
Q ss_pred ccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHHHHHhcCCCCCccEEEEecCceeeccCCCCCC-CCC
Q psy14377 503 GQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAY-GMG 581 (848)
Q Consensus 503 ~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~-gmg 581 (848)
....|.++||++|||||+++|+.++ +|++++++ |+.++++++|||||+|||||||+|.+ +++
T Consensus 26 ~~~~~~~~l~~~YtP~v~~~c~~~~-------------~~~~~~~~----~~~~~~~v~vvtdgt~ilGlG~iG~hS~sP 88 (439)
T 2dvm_A 26 VSLESREELTLAYTPGVAEPCKEIA-------------RDPGKVYE----YTSKGNLVAVVSDGSRILGLGNIGPLAGLP 88 (439)
T ss_dssp SCCCSHHHHHHHSTTTTHHHHHHHH-------------HCGGGHHH----HSSGGGEEEEEECSTTBTTTBCCCHHHHHH
T ss_pred eccCCHHHCeeEECchhHHHHHHHH-------------HCHHHHHh----hcccCcEEEEEECCCeEecccceeccccCH
Confidence 3467889999999999999999954 26677775 66666799999999999999999997 799
Q ss_pred ccccceeeeeecCCCCCCceeeEEeeccCCcccccCCcccccccccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCC
Q psy14377 582 IPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFA 661 (848)
Q Consensus 582 IpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~ 661 (848)
++.||+.||++||||| ++|++||+ +|| ++| .++++.+.+.|+. +|||||+
T Consensus 89 vmh~ka~lf~~~gGid---~~yi~ldv--------~d~---------------de~-~~~v~~l~~~f~G---invED~T 138 (439)
T 2dvm_A 89 VMEGKALLFKRFGGVD---AFPIMIKE--------QEP---------------NKF-IDIVKAIAPTFGG---INLEDIA 138 (439)
T ss_dssp HHHHHHHHHHHHHCCE---EEEEECSC--------CSH---------------HHH-HHHHHHTGGGCSE---EEECSCC
T ss_pred HHHHHHHHHHHhCCCC---Ceeeeeec--------CCH---------------HHH-HHHHHHhCccCcE---EEEEeCC
Confidence 9999999999999999 99999999 243 343 2344444456655 9999999
Q ss_pred CcchHHHHHHHccc--CceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcc--cccc
Q psy14377 662 NHSAFRFLDTYRNR--YCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRI--TKTR 737 (848)
Q Consensus 662 ~~naf~lL~ryr~~--~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~--~~~~ 737 (848)
.|+||++|++|++. +|+||||+||||++.++|+++|++.+|++++++|+||+|||.| |.+|+.+|...++ +++.
T Consensus 139 ~P~k~~il~~l~~avNt~vf~dD~~gtgntd~aG~~~AL~~~g~~l~~~rvlvlGAGgA--g~aia~~L~~~G~~~~~I~ 216 (439)
T 2dvm_A 139 SPKCFYILERLREELDIPVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAA--GFATLRILTEAGVKPENVR 216 (439)
T ss_dssp TTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEECCSHH--HHHHHHHHHHTTCCGGGEE
T ss_pred CchHHHHHHHHHHhcCEEEEeCCCcEEeehHHHHHHHHHHHhCCCccCCEEEEECccHH--HHHHHHHHHHcCCCcCeEE
Confidence 99999999999984 8999999999999999999999999999999999999999999 9999999999998 7887
Q ss_pred ccc-----CceecCCCCCC--chH-HHhhhccc----cchhhccccCCCceEEeecCC--Ccc
Q psy14377 738 LSD-----NTILFQGAGEG--TAS-VAIAGLLA----SLRITKTRLSDNTILFQGSGE--GTA 786 (848)
Q Consensus 738 ~~d-----~g~i~~~r~~~--~~~-~~~~~~~~----~~r~~~~~~~~~~~~~~~s~~--~~~ 786 (848)
++| +|+++++ .+. ++. +...+..+ +...++++++++|++++.|.- |..
T Consensus 217 vvd~~~~R~G~~~~a-~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~aDVlInaT~~~~G~~ 278 (439)
T 2dvm_A 217 VVELVNGKPRILTSD-LDLEKLFPYRGWLLKKTNGENIEGGPQEALKDADVLISFTRPGPGVI 278 (439)
T ss_dssp EEEEETTEEEECCTT-SCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTTCSEEEECSCCCSSSS
T ss_pred EEEccCCCcCccccc-cchhHHHHHHHHHhhccccccccccHHHHhccCCEEEEcCCCccCCC
Confidence 776 6777776 221 222 11222222 245678899999999999998 654
No 14
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*
Probab=99.98 E-value=1e-33 Score=314.82 Aligned_cols=296 Identities=19% Similarity=0.248 Sum_probs=229.3
Q ss_pred CccccccccCC--ccccccccCCc--CccCCcCccceeeec----ccChhhHHHHH----Hhhcc---------------
Q psy14377 106 SQRDFLSSWLN--RGPCLNCWGKR--DFEQDKQGISYSIHA----SLGIADLCVMA----MQKEG--------------- 158 (848)
Q Consensus 106 ~~~piifA~sn--~~~~i~atG~~--~fdypnQ~Nnv~vfp----~Lgl~~m~~~A----~~ala--------------- 158 (848)
+++++.++|+| +.+|..+.-+| .|+||++.|-|+|++ .||+++++..+ ++.++
T Consensus 30 ~~~~l~~~YtP~v~~~c~~~~~~~~~~~~~~~~~~~v~vvtdgt~ilGlG~iG~hS~sPvmh~ka~lf~~~gGid~~yi~ 109 (439)
T 2dvm_A 30 SREELTLAYTPGVAEPCKEIARDPGKVYEYTSKGNLVAVVSDGSRILGLGNIGPLAGLPVMEGKALLFKRFGGVDAFPIM 109 (439)
T ss_dssp SHHHHHHHSTTTTHHHHHHHHHCGGGHHHHSSGGGEEEEEECSTTBTTTBCCCHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred CHHHCeeEECchhHHHHHHHHHCHHHHHhhcccCcEEEEEECCCeEecccceeccccCHHHHHHHHHHHHhCCCCCeeee
Confidence 88899999999 88897777777 778999999999999 56765555432 23322
Q ss_pred CChhhHhhhhhcccccccccCCCCCCCCccccccccccchhhhhHHhhhcCCCCeE---EEchhhHHHHHHHHHHHHHhC
Q psy14377 159 TSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI---LIGESCVNDVAGLLASLRITK 235 (848)
Q Consensus 159 ~~v~d~~~~ay~~~~~G~lYPkppd~gIr~edIavAk~fe~ek~Lle~lr~~iPvF---qhGTA~V~~lAgll~Al~~tg 235 (848)
.++++.+. +++..-.++| .+.+++.||++.|.||++++.+.+.+ ++|+| +|||+ .++++|+++|++.+|
T Consensus 110 ldv~d~de---~~~~v~~l~~--~f~GinvED~T~P~k~~il~~l~~av--Nt~vf~dD~~gtg-ntd~aG~~~AL~~~g 181 (439)
T 2dvm_A 110 IKEQEPNK---FIDIVKAIAP--TFGGINLEDIASPKCFYILERLREEL--DIPVFHDDQQGTA-AVVLAGLLNALKVVG 181 (439)
T ss_dssp CSCCSHHH---HHHHHHHTGG--GCSEEEECSCCTTHHHHHHHHHHHHC--SSCEEEHHHHHHH-HHHHHHHHHHHHHHT
T ss_pred eecCCHHH---HHHHHHHhCc--cCcEEEEEeCCCchHHHHHHHHHHhc--CEEEEeCCCcEEe-ehHHHHHHHHHHHhC
Confidence 12211111 1222333445 66789999999999999999887754 79999 89999 555999999999999
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEc----CCCcccCCCCCCC---CCccccccccccCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVD----SKGLIVKDRPEGG---VTGHKVHYAKKHAP 308 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD----~kGLi~~~r~~~~---l~~~k~~~a~~~~~ 308 (848)
++++++|+||+|||+||.+|+.+|... |.+ +++||++| ++|+++++. . +.+++.+|++....
T Consensus 182 ~~l~~~rvlvlGAGgAg~aia~~L~~~----G~~----~~~I~vvd~~~~R~G~~~~a~---~~~~L~~~~~~~a~~~~~ 250 (439)
T 2dvm_A 182 KKISEITLALFGAGAAGFATLRILTEA----GVK----PENVRVVELVNGKPRILTSDL---DLEKLFPYRGWLLKKTNG 250 (439)
T ss_dssp CCTTTCCEEEECCSHHHHHHHHHHHHT----TCC----GGGEEEEEEETTEEEECCTTS---CHHHHSTTCHHHHTTSCT
T ss_pred CCccCCEEEEECccHHHHHHHHHHHHc----CCC----cCeEEEEEccCCCcCcccccc---chhHHHHHHHHHhhcccc
Confidence 999999999999999999999998865 876 38999999 999998762 2 33333333221100
Q ss_pred cchhhhhhhccccccHHHHhhhcccccCcccccchhHHHHHhhccccccCCChhhHHHHHHhhcccceeEEEeccCceec
Q psy14377 309 VKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERIL 388 (848)
Q Consensus 309 ~~~l~~~~n~g~~~~~~er~~~~~~G~~p~~v~~~~~q~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~d~~~l~ 388 (848)
T Consensus 251 -------------------------------------------------------------------------------- 250 (439)
T 2dvm_A 251 -------------------------------------------------------------------------------- 250 (439)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCcccccccHHHHHcCCCcCccCceeeEEccccccccCCC-CCCCHHHHHHHHhcCCCceEEecCCCCCcc
Q psy14377 389 GLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIP-QVFTADILKDMAAFNKRPIIFALSNPTSKA 467 (848)
Q Consensus 389 g~~~~g~~~~~~~~g~~~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~-g~FTeevvk~Ma~~~~rPIIFaLSNPt~~~ 467 (848)
.+...+|.++++++ ||+||+ |+.| |+|++++++.|+ ++||||+||||+ +
T Consensus 251 ------------~~~~~~L~e~l~~a--------DVlIna-----T~~~~G~~~~e~v~~m~---~~~iVfDLynP~--~ 300 (439)
T 2dvm_A 251 ------------ENIEGGPQEALKDA--------DVLISF-----TRPGPGVIKPQWIEKMN---EDAIVFPLANPV--P 300 (439)
T ss_dssp ------------TCCCSSHHHHHTTC--------SEEEEC-----SCCCSSSSCHHHHTTSC---TTCEEEECCSSS--C
T ss_pred ------------ccccccHHHHhccC--------CEEEEc-----CCCccCCCChHHHHhcC---CCCEEEECCCCC--C
Confidence 00011356677665 999997 5664 999999999987 799999999999 8
Q ss_pred CCCHHHHhccCCCcEEEEeCCCCCCcccCCeEEecccchhhccCCeEecchhhhHHHhhccccccCccceeeccCcccHH
Q psy14377 468 ECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHIS 547 (848)
Q Consensus 468 E~tpe~a~~~T~G~ai~AtGsPf~pv~y~g~~~~~~q~nn~e~lPvvYTPGVG~acl~~~~i~r~p~gm~L~~~d~g~i~ 547 (848)
||.+++|++| |++++|||+ ++.|+|+||++. |||++++++.+++. +++++|+++ ..
T Consensus 301 t~~~~~A~~~--G~~ivatG~----------~ml~~Q~nn~~~-----FPGi~~g~l~~~a~-~i~~~m~~a------aa 356 (439)
T 2dvm_A 301 EILPEEAKKA--GARIVATGR----------SDYPNQINNLLG-----FPGIFRGALDVRAR-TITDSMIIA------AA 356 (439)
T ss_dssp SSCHHHHHHH--TCSEECBSC----------SSSSSBCCGGGT-----HHHHHHHHHHTTCS-CCCHHHHHH------HH
T ss_pred cchHHHHHHc--CCeEEcCCC----------chhHHHHHHHhc-----ccCchHHHHhcCCC-CCCHHHHHH------HH
Confidence 9999999999 889999998 356999999954 79999999999985 789999997 67
Q ss_pred HHHhcCC
Q psy14377 548 EVLRNWP 554 (848)
Q Consensus 548 eiL~Nwp 554 (848)
+.|++..
T Consensus 357 ~ala~~~ 363 (439)
T 2dvm_A 357 KAIASIV 363 (439)
T ss_dssp HHHHHTS
T ss_pred HHHHhhC
Confidence 7888763
No 15
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=97.27 E-value=0.00034 Score=78.42 Aligned_cols=134 Identities=11% Similarity=0.179 Sum_probs=90.3
Q ss_pred CCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHH-------H--------------HHHcc-------cCcee-
Q psy14377 629 TTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRF-------L--------------DTYRN-------RYCVF- 679 (848)
Q Consensus 629 ~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~l-------L--------------~ryr~-------~~~~F- 679 (848)
.+-|+|+..+++.+.. ..++|+.++ |-+..=...+ + .||+. .+|+|
T Consensus 112 ~~~~ey~~~~~~~~~~--~~~~p~~il---DdGgdl~~~~h~~~~~~~~~i~G~~EeTttGv~rl~~~~~~g~L~~Pvi~ 186 (435)
T 3gvp_A 112 ESEDDFWWCIDRCVNV--EGWQPNMIL---DDGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMN 186 (435)
T ss_dssp CCHHHHHHHHHHHHCB--TTBCCSEEE---ESSSHHHHHHHHHCHHHHHTCCEEEECCHHHHHHHTCC--CCCCCSCEEE
T ss_pred CCHHHHHHHHHHHHhc--cCCCCcEEE---ecchHHHHHHHHHhHHHHhhcceeEeccchhHHHHHHHHHcCCCCCCEEE
Confidence 3557777777765532 335676555 3343222211 1 44543 38999
Q ss_pred ---------ccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCC
Q psy14377 680 ---------NDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAG 749 (848)
Q Consensus 680 ---------nDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~ 749 (848)
+|+++||+-++++|+..+ ++..+.+.+++|+|+|.. |.++|+.+...++ ++..+| ++.
T Consensus 187 vnds~tK~~fDn~yGt~~s~~~gi~ra---t~~~L~GktV~ViG~G~I--Gk~vA~~Lra~Ga-~Viv~D~dp~------ 254 (435)
T 3gvp_A 187 VNDSVTKQKFDNLYCCRESILDGLKRT---TDMMFGGKQVVVCGYGEV--GKGCCAALKAMGS-IVYVTEIDPI------ 254 (435)
T ss_dssp CTTCHHHHHHHTHHHHHHHHHHHHHHH---HCCCCTTCEEEEECCSHH--HHHHHHHHHHTTC-EEEEECSCHH------
T ss_pred ecchhhhhhhhhhhhhHHHHHHHHHHh---hCceecCCEEEEEeeCHH--HHHHHHHHHHCCC-EEEEEeCChh------
Confidence 899999999999999765 688999999999999999 9999999998876 344444 331
Q ss_pred CCchHHHhhhccccchhhccccCCCceEEeecC
Q psy14377 750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSG 782 (848)
Q Consensus 750 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s~ 782 (848)
........|. ....+++++.++||++..++
T Consensus 255 -ra~~A~~~G~--~v~~Leeal~~ADIVi~atg 284 (435)
T 3gvp_A 255 -CALQACMDGF--RLVKLNEVIRQVDIVITCTG 284 (435)
T ss_dssp -HHHHHHHTTC--EECCHHHHTTTCSEEEECSS
T ss_pred -hhHHHHHcCC--EeccHHHHHhcCCEEEECCC
Confidence 0011112232 12457888999999999643
No 16
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=97.14 E-value=0.0012 Score=74.13 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=49.7
Q ss_pred CCCCeE-------------EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcC
Q psy14377 209 TVKPSI-------------LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARD 275 (848)
Q Consensus 209 ~~iPvF-------------qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~ 275 (848)
..+|+| ++||+.+. +.+++.+ ++..|++.+++|+|.|..|.++|..+... |.
T Consensus 171 L~iPVinvndsvtk~~~Dn~~Gt~~sl-ldgi~ra---tg~~L~GktVgIiG~G~IG~~vA~~Lka~----Ga------- 235 (436)
T 3h9u_A 171 LTIPAMNVNDSVTKSKFDNLYGCRESL-VDGIKRA---TDVMIAGKTACVCGYGDVGKGCAAALRGF----GA------- 235 (436)
T ss_dssp CCSCEEECTTSHHHHTTHHHHHHHHHH-HHHHHHH---HCCCCTTCEEEEECCSHHHHHHHHHHHHT----TC-------
T ss_pred CCCceEeechhhhhhhhhccccchHHH-HHHHHHh---cCCcccCCEEEEEeeCHHHHHHHHHHHHC----CC-------
Confidence 468888 67999888 8999755 79999999999999999999999988754 73
Q ss_pred cEEEEcC
Q psy14377 276 KIWMVDS 282 (848)
Q Consensus 276 ~i~~vD~ 282 (848)
+++.+|+
T Consensus 236 ~Viv~D~ 242 (436)
T 3h9u_A 236 RVVVTEV 242 (436)
T ss_dssp EEEEECS
T ss_pred EEEEECC
Confidence 5777776
No 17
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=97.12 E-value=0.0023 Score=71.83 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=45.4
Q ss_pred EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+|||+.+. ++|+.++ ++..|.+.+++|+|+|..|.++|..+... |. +++.+|+
T Consensus 199 ~yGt~~s~-~~gi~ra---t~~~L~GktV~ViG~G~IGk~vA~~Lra~----Ga-------~Viv~D~ 251 (435)
T 3gvp_A 199 LYCCRESI-LDGLKRT---TDMMFGGKQVVVCGYGEVGKGCCAALKAM----GS-------IVYVTEI 251 (435)
T ss_dssp HHHHHHHH-HHHHHHH---HCCCCTTCEEEEECCSHHHHHHHHHHHHT----TC-------EEEEECS
T ss_pred hhhhHHHH-HHHHHHh---hCceecCCEEEEEeeCHHHHHHHHHHHHC----CC-------EEEEEeC
Confidence 78999998 8998866 79999999999999999999999987754 73 5777665
No 18
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=96.76 E-value=0.002 Score=72.30 Aligned_cols=92 Identities=15% Similarity=0.254 Sum_probs=67.3
Q ss_pred cCcee----------ccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-Cce
Q psy14377 675 RYCVF----------NDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTI 743 (848)
Q Consensus 675 ~~~~F----------nDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~ 743 (848)
.+|+| .|++.||+.+++.+++. .++..|.+.+++|+|.|.. |.++|+.+..+++ ++..+| +..
T Consensus 172 ~iPVinvndsvtk~~~Dn~~Gt~~slldgi~r---atg~~L~GktVgIiG~G~I--G~~vA~~Lka~Ga-~Viv~D~~p~ 245 (436)
T 3h9u_A 172 TIPAMNVNDSVTKSKFDNLYGCRESLVDGIKR---ATDVMIAGKTACVCGYGDV--GKGCAAALRGFGA-RVVVTEVDPI 245 (436)
T ss_dssp CSCEEECTTSHHHHTTHHHHHHHHHHHHHHHH---HHCCCCTTCEEEEECCSHH--HHHHHHHHHHTTC-EEEEECSCHH
T ss_pred CCceEeechhhhhhhhhccccchHHHHHHHHH---hcCCcccCCEEEEEeeCHH--HHHHHHHHHHCCC-EEEEECCChh
Confidence 39999 89999999999999965 4689999999999999999 9999999998875 455454 221
Q ss_pred ecCCCCCCchHHHhhhccccchhhccccCCCceEEeec
Q psy14377 744 LFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGS 781 (848)
Q Consensus 744 i~~~r~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s 781 (848)
....-...|.. ...+++++.++||++..+
T Consensus 246 -------~a~~A~~~G~~--~~sL~eal~~ADVVilt~ 274 (436)
T 3h9u_A 246 -------NALQAAMEGYQ--VLLVEDVVEEAHIFVTTT 274 (436)
T ss_dssp -------HHHHHHHTTCE--ECCHHHHTTTCSEEEECS
T ss_pred -------hhHHHHHhCCe--ecCHHHHHhhCCEEEECC
Confidence 00011122321 125777888888888644
No 19
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=96.33 E-value=0.0014 Score=72.80 Aligned_cols=133 Identities=17% Similarity=0.154 Sum_probs=80.9
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCC-C----CC-------Chhhhhhcc
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPE-G----GV-------TGHKVHYAK 78 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d-~----~l-------~~~k~~~a~ 78 (848)
.+...||+|+|+|.+|+++++++.. +|. +|+++|+.........+ + .+ .+.+..|++
T Consensus 187 ~v~~~kV~ViG~G~iG~~aa~~a~~----lGa-------~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~ 255 (405)
T 4dio_A 187 TVPAAKIFVMGAGVAGLQAIATARR----LGA-------VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAK 255 (405)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHHH----TTC-------EEEEECSSTTHHHHHHHTTCEECCCCC--------------
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHH----CCC-------EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhh
Confidence 4788999999999999999999884 885 79999997643211111 0 00 011222443
Q ss_pred cCC------CCCCHHHHhcccCCCchhh----------------hhccCCccccccccCC-ccccccccCCcCccCCcCc
Q psy14377 79 KHA------PVKNLADVVKTVKPSILIE----------------ELKGLSQRDFLSSWLN-RGPCLNCWGKRDFEQDKQG 135 (848)
Q Consensus 79 ~~~------~~~tL~ea~~~s~~~v~~g----------------~vk~M~~~piifA~sn-~~~~i~atG~~~fdypnQ~ 135 (848)
+-. ...+|+|++++ +|++++ |++.|.+..+|+-+|- .+-|+..| +|+..| ..
T Consensus 256 e~s~~~~~~~~~~l~e~l~~--aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t-~~~~~~--~~ 330 (405)
T 4dio_A 256 EMSGEYQVKQAALVAEHIAK--QDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGA-EAGKVT--EV 330 (405)
T ss_dssp ---CHHHHHHHHHHHHHHHT--CSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTC-CTTEEE--EE
T ss_pred hcchhhhhhhHhHHHHHhcC--CCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCcccc-CCCCeE--EE
Confidence 110 12478999986 566543 9999999999999996 55566666 452223 24
Q ss_pred cceeeecccCh-hhHHHHHHhhccC
Q psy14377 136 ISYSIHASLGI-ADLCVMAMQKEGT 159 (848)
Q Consensus 136 Nnv~vfp~Lgl-~~m~~~A~~ala~ 159 (848)
|.|.++-+.++ +.+-..|++.++.
T Consensus 331 ~GV~~~gv~nlP~~vp~tAS~~ls~ 355 (405)
T 4dio_A 331 GGVRIVGHLNVAGRIAASASLLYAK 355 (405)
T ss_dssp TTEEEEECSSGGGGGHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccCHHHHHHHHHH
Confidence 55555544444 3444556666654
No 20
>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E
Probab=95.96 E-value=0.037 Score=62.43 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=92.3
Q ss_pred CCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHH---HHHHHc---ccC-cee----------ccCCchHHHHH
Q psy14377 628 RTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFR---FLDTYR---NRY-CVF----------NDDIQGTASVA 690 (848)
Q Consensus 628 R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~---lL~ryr---~~~-~~F----------nDDiQGTaaV~ 690 (848)
..+..|-..|...|+..+.+..||++-|--.|++.. +.+ +.+.|+ +.. +|| .+.-.-||-=+
T Consensus 140 ~~s~~El~R~~~~f~~eL~~~iG~d~dvpa~Dig~~-~~em~~~~~~y~~~~~~~~~v~TGk~~~~GGs~~r~~aTg~Gv 218 (450)
T 4fcc_A 140 GKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVG-GREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGL 218 (450)
T ss_dssp TCCHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBC-HHHHHHHHHHHHHHHTCCSCCCSSCCGGGTCCTTTTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhheecCCCCCCccceeec-chhhhhhhhhhhhccCCCceeecCCCcccCCCCCCCCceeeeH
Confidence 345667788899999999999999999999999753 222 334443 332 232 23334577777
Q ss_pred HHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCC
Q psy14377 691 VAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGA 748 (848)
Q Consensus 691 LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r 748 (848)
.-++-.+++..+.+|++.|++|-|.|.- |...|+.|.+.+.+-+.++| +|.||.-.
T Consensus 219 ~~~~~~~~~~~~~~l~Gk~vaVQG~GnV--G~~aa~~L~e~GakvVavsD~~G~i~d~~ 275 (450)
T 4fcc_A 219 VYFTEAMLKRHGMGFEGMRVSVSGSGNV--AQYAIEKAMEFGARVITASDSSGTVVDES 275 (450)
T ss_dssp HHHHHHHHHHTTCCSTTCEEEEECCSHH--HHHHHHHHHHTTCEEEEEEETTEEEECTT
T ss_pred HHHHHHHHHHcCCCcCCCEEEEeCCChH--HHHHHHHHHhcCCeEEEEecCCceEEeCC
Confidence 7888889999999999999999999999 99999999999988888888 99998543
No 21
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=95.85 E-value=0.008 Score=66.22 Aligned_cols=149 Identities=19% Similarity=0.267 Sum_probs=84.7
Q ss_pred CcccHHHHHhcCCCCCccEEEEecCceeeccCCCCCC--CCCccccceeeeeecCCCCCCceeeEEeeccCCcccccCCc
Q psy14377 542 DKGHISEVLRNWPETDIRAIVVTDGERILGLGDLGAY--GMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 619 (848)
Q Consensus 542 d~g~i~eiL~Nwp~~d~~viVVTDG~rILGLGDlG~~--gmgIpvGKl~Ly~a~aGI~p~~~LPv~LDvGTnn~~ll~Dp 619 (848)
++..++++.++. .+|+|.++++..+|++|.+.. |+.|.-+ ..+|. | +++|.+. +|
T Consensus 26 tP~~v~~L~~~G----~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~-~~~~~-a---------diil~vk--------~p 82 (401)
T 1x13_A 26 TPKTVEQLLKLG----FTVAVESGAGQLASFDDKAFVQAGAEIVEG-NSVWQ-S---------EIILKVN--------AP 82 (401)
T ss_dssp CHHHHHHHHHTT----CEEEEETTTTGGGTCCHHHHHHHTCEEECG-GGGGS-S---------SEEECSS--------CC
T ss_pred CHHHHHHHHHCC----CEEEEEECCCcccCCChHHHHHCCCEEecc-HHHhc-C---------CeEEEeC--------CC
Confidence 344556666553 368999999999999998876 5555545 44554 1 5667553 22
Q ss_pred ccccccccCCCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHccc-Cceec-cCC------c----hHH
Q psy14377 620 LYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNR-YCVFN-DDI------Q----GTA 687 (848)
Q Consensus 620 ~y~g~r~~R~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~-~~~Fn-DDi------Q----GTa 687 (848)
..+.+..+++ ...+|.+=..+. .-..++.++++ +.+|+ +.+ | .+.
T Consensus 83 ------------------~~~~i~~l~~---~~~li~~~~~~~--d~~~~~al~~~gI~v~~~e~v~~~~~a~~l~~l~~ 139 (401)
T 1x13_A 83 ------------------LDDEIALLNP---GTTLVSFIWPAQ--NPELMQKLAERNVTVMAMDSVPRISRAQSLDALSS 139 (401)
T ss_dssp ------------------CHHHHTTCCT---TCEEEECCCGGG--CHHHHHHHHHTTCEEEEGGGCCCSGGGGGGCHHHH
T ss_pred ------------------CHHHHHHhcC---CCcEEEEecCCC--CHHHHHHHHHCCCEEEEeehhhhhhhhcccchHHH
Confidence 0122222221 122232222221 12233444443 66662 222 2 455
Q ss_pred HHHHHHHHHHHhh----hCC----------cCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 688 SVAVAGLLASLRI----TKT----------RLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 688 aV~LAgllaAlr~----t~~----------~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
...+|| .+|++. .++ .+...+++|+|+|.+ |.++++.+..+++ ++.++|
T Consensus 140 ~a~~ag-~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~ViGaG~i--G~~aa~~a~~~Ga-~V~v~D 202 (401)
T 1x13_A 140 MANIAG-YRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVA--GLAAIGAANSLGA-IVRAFD 202 (401)
T ss_dssp HHHHHH-HHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHH--HHHHHHHHHHTTC-EEEEEC
T ss_pred HHHHHH-HHHHHHHHHhcccccCCceeeccCcCCCEEEEECCCHH--HHHHHHHHHHCCC-EEEEEc
Confidence 555555 333332 222 366899999999999 9999999998886 555555
No 22
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Probab=95.80 E-value=0.031 Score=62.57 Aligned_cols=122 Identities=16% Similarity=0.207 Sum_probs=94.2
Q ss_pred CCCcchhHHHHHHHHHHHHhhCCceeeeeecCCCc-chHH-HHHHHcccC-----cee----------ccCCchHHHHHH
Q psy14377 629 TTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANH-SAFR-FLDTYRNRY-----CVF----------NDDIQGTASVAV 691 (848)
Q Consensus 629 ~~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~-naf~-lL~ryr~~~-----~~F----------nDDiQGTaaV~L 691 (848)
.+..|-..|...|++++.+--||+.-|-=+|++.. .-.. +.+.|+... .++ .|--.-||-=+.
T Consensus 126 ~s~~El~r~~r~f~~~l~~~iG~~~dipApDvgt~~~~m~~~~~~y~~~~g~~~~~~vTGkp~~~GGs~~r~~aTg~Gv~ 205 (424)
T 3k92_A 126 MSFGELERLSRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGGSQGRETATAQGVT 205 (424)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHTSCCGGGCSSCCGGGTCCTTTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccCCcCCCCHHHHHHHHHHHHHHhCCCCcceeecccccCCCcCCCcccHHHHHH
Confidence 34456677889999999998899888888999863 2222 456675321 122 334456888888
Q ss_pred HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCchH
Q psy14377 692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTAS 754 (848)
Q Consensus 692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~~ 754 (848)
.++-++++..|.+|++.||+|.|.|.. |...|++|.+.+.+-+.++| +|.||. ++|.+.
T Consensus 206 ~~~~~~~~~~g~~l~g~~vaVqG~GnV--G~~aa~~l~e~GakVVavsD~~G~iyd--~~GlD~ 265 (424)
T 3k92_A 206 ICIEEAVKKKGIKLQNARIIIQGFGNA--GSFLAKFMHDAGAKVIGISDANGGLYN--PDGLDI 265 (424)
T ss_dssp HHHHHHHHHTTCCGGGCEEEEECCSHH--HHHHHHHHHHHTCEEEEEECSSCEEEC--TTCCCH
T ss_pred HHHHHHHHHcCCCcccCEEEEECCCHH--HHHHHHHHHHCCCEEEEEECCCCcEEC--CCCCCH
Confidence 888899999999999999999999999 99999999999987778999 999994 455553
No 23
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=95.41 E-value=0.019 Score=65.28 Aligned_cols=93 Identities=17% Similarity=0.302 Sum_probs=68.2
Q ss_pred cCcee----------ccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-Cce
Q psy14377 675 RYCVF----------NDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTI 743 (848)
Q Consensus 675 ~~~~F----------nDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~ 743 (848)
.+|+| .|+++||+-.++.++. |.++..|.+.+++|.|+|.. |.++|+.+...++ ++.++| +..
T Consensus 226 ~iPvinvnDs~tK~~fDn~yGt~~sl~dgi~---r~tg~~L~GKtVvVtGaGgI--G~aiA~~Laa~GA-~Viv~D~~~~ 299 (488)
T 3ond_A 226 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVVAGYGDV--GKGCAAALKQAGA-RVIVTEIDPI 299 (488)
T ss_dssp CSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---HHHCCCCTTCEEEEECCSHH--HHHHHHHHHHTTC-EEEEECSCHH
T ss_pred CCceecccchhhhhHhhhhccccHHHHHHHH---HHcCCcccCCEEEEECCCHH--HHHHHHHHHHCCC-EEEEEcCCHH
Confidence 48999 7899999999998886 67889999999999999988 9999999999886 555444 221
Q ss_pred ecCCCCCCchHHHhhhccccchhhccccCCCceEEeecC
Q psy14377 744 LFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSG 782 (848)
Q Consensus 744 i~~~r~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s~ 782 (848)
.-......|. +-..+++.+..+|+++..++
T Consensus 300 -------~a~~Aa~~g~--dv~~lee~~~~aDvVi~atG 329 (488)
T 3ond_A 300 -------CALQATMEGL--QVLTLEDVVSEADIFVTTTG 329 (488)
T ss_dssp -------HHHHHHHTTC--EECCGGGTTTTCSEEEECSS
T ss_pred -------HHHHHHHhCC--ccCCHHHHHHhcCEEEeCCC
Confidence 1111112232 22345777888998886554
No 24
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}
Probab=95.38 E-value=0.071 Score=59.62 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=91.3
Q ss_pred CCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcc--hHHHHHHHccc-----Ccee----------ccCCchHHHHHHH
Q psy14377 630 TGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHS--AFRFLDTYRNR-----YCVF----------NDDIQGTASVAVA 692 (848)
Q Consensus 630 ~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~n--af~lL~ryr~~-----~~~F----------nDDiQGTaaV~LA 692 (848)
+..|-..|...|++++.+.-||+.-|-=+|++..- ---+.++|+.. -.++ .+.-.-||-=+.-
T Consensus 124 s~~El~r~~r~f~~~l~~~iGp~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv~~ 203 (419)
T 3aoe_E 124 SPQELERLVRRYTAELVGLIGPDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVTGKPHALGGSEGRDDAAGLGALL 203 (419)
T ss_dssp CHHHHHHHHHHHHHHHTTTCBTTTEEEEEBTTBCHHHHHHHHHHHHHHHTSCCGGGBSSCCGGGTCCSSCSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCeeeccchhcCCCCCCccchHHHHHH
Confidence 44556778899999999988899999999998642 12345666331 0122 2333457766777
Q ss_pred HHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCch
Q psy14377 693 GLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTA 753 (848)
Q Consensus 693 gllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~ 753 (848)
++-.+++-.|.+|++.|++|.|.|.- |...|++|.+.+.+-+.++| +|.||.. .|.+
T Consensus 204 ~~~~~~~~~g~~l~gk~vaVqG~GnV--G~~~a~~L~~~GakVVavsD~~G~i~dp--~Gld 261 (419)
T 3aoe_E 204 VLEALAKRRGLDLRGARVVVQGLGQV--GAAVALHAERLGMRVVAVATSMGGMYAP--EGLD 261 (419)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCSHH--HHHHHHHHHHTTCEEEEEEETTEEEECT--TCCC
T ss_pred HHHHHHHhcCCCccCCEEEEECcCHH--HHHHHHHHHHCCCEEEEEEcCCCeEECC--CCCC
Confidence 78888888999999999999999999 99999999999877777999 9999964 4444
No 25
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=95.27 E-value=0.11 Score=56.00 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=32.3
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRP 65 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~ 65 (848)
+|||+|||.||++||.-|.. .|.+ -+|.++|+.....-.|+
T Consensus 4 ~vvIIGaG~AGl~aA~~L~~----~g~~-----~~V~li~~~~~~~y~~~ 44 (410)
T 3ef6_A 4 HVAIIGNGVGGFTTAQALRA----EGFE-----GRISLIGDEPHLPYDRP 44 (410)
T ss_dssp EEEEECCSHHHHHHHHHHHH----TTCC-----SEEEEEECSSSSSBCSG
T ss_pred CEEEEcccHHHHHHHHHHHc----cCcC-----CeEEEEECCCCCCcCCc
Confidence 89999999999999998874 7754 37999998765544444
No 26
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}
Probab=95.09 E-value=0.12 Score=58.74 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=89.1
Q ss_pred CCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcch--HHHHHHHccc--C--cee----------ccCCchHHHHHHHH
Q psy14377 630 TGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSA--FRFLDTYRNR--Y--CVF----------NDDIQGTASVAVAG 693 (848)
Q Consensus 630 ~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~na--f~lL~ryr~~--~--~~F----------nDDiQGTaaV~LAg 693 (848)
+..+...|-..|+..+.+..||..-|-=+|++..-. --+.++|+.. . .|+ .++-.-||-=+.-+
T Consensus 159 S~~El~r~~r~f~~~L~~~iGp~~DvpApDvGt~~~em~~~~~~y~~~~~~~~gvvTGKp~~~GGs~~r~~aTg~Gv~~~ 238 (470)
T 2bma_A 159 SDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYF 238 (470)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEEEECCSSCCHHHHHHHHHHHHHHHCCCSCSSSSCCGGGTCCTTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhccCCCCCccCCCCCCChHHHHHHHHHHHHhcCCcccEEeCCCccCCCCCCccccchHHHHHH
Confidence 344556777779999988889999999999986321 1245566531 1 111 12334566666667
Q ss_pred HHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCch
Q psy14377 694 LLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTA 753 (848)
Q Consensus 694 llaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~ 753 (848)
+-.+++..|.+|++.|++|.|.|.- |...|+.|.+.+.+-+.++| +|.||. ++|.+
T Consensus 239 ~~~~l~~~G~~l~g~~vaVqG~GnV--G~~~a~~L~~~GakvVavsD~~G~i~d--p~Gid 295 (470)
T 2bma_A 239 VLEVLKSLNIPVEKQTAVVSGSGNV--ALYCVQKLLHLNVKVLTLSDSNGYVYE--PNGFT 295 (470)
T ss_dssp HHHHHHTTTCCGGGCEEEEECSSHH--HHHHHHHHHHTTCEECEEEETTEEEEC--SSCCC
T ss_pred HHHHHHhccCCcCCCEEEEECCcHH--HHHHHHHHHHCCCEEEEEEeCCceEEC--CCCCC
Confidence 7788888899999999999999999 99999999999987777999 999986 45553
No 27
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=94.99 E-value=0.057 Score=58.40 Aligned_cols=42 Identities=31% Similarity=0.447 Sum_probs=31.2
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRP 65 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~ 65 (848)
+.-||||+|||.||+++|+-|. ..| -+|.++|++.-+.-.|.
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~----~~~-------~~itlie~~~~~~y~~~ 49 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAAL----GKC-------DDITMINSEKYLPYYRP 49 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHT----TTC-------SCEEEECSSSSCCBCGG
T ss_pred CCCCEEEEcCcHHHHHHHHHHh----CCC-------CEEEEEECCCCCCcccC
Confidence 3469999999999999999763 234 37999998765443344
No 28
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=94.92 E-value=0.013 Score=64.80 Aligned_cols=134 Identities=16% Similarity=0.142 Sum_probs=81.5
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCC-C-----------CCChhhhh---
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPE-G-----------GVTGHKVH--- 75 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d-~-----------~l~~~k~~--- 75 (848)
.+...|++|+|+|.+|..+++++.. +|. +|+++|+..--...-.+ + +.+.+.++
T Consensus 181 ~v~~~kV~ViG~G~iG~~aa~~a~~----lGa-------~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~ 249 (381)
T 3p2y_A 181 TVKPASALVLGVGVAGLQALATAKR----LGA-------KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSE 249 (381)
T ss_dssp EECCCEEEEESCSHHHHHHHHHHHH----HTC-------EEEEECSSGGGHHHHHHTTCEECCCC-------------CH
T ss_pred CcCCCEEEEECchHHHHHHHHHHHH----CCC-------EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhH
Confidence 3678899999999999999999884 784 79999987531110000 0 01111111
Q ss_pred -hcccCCCCCCHHHHhcccCCCchhh----------------hhccCCccccccccCC-ccccccccCCcCccCCcCccc
Q psy14377 76 -YAKKHAPVKNLADVVKTVKPSILIE----------------ELKGLSQRDFLSSWLN-RGPCLNCWGKRDFEQDKQGIS 137 (848)
Q Consensus 76 -~a~~~~~~~tL~ea~~~s~~~v~~g----------------~vk~M~~~piifA~sn-~~~~i~atG~~~fdypnQ~Nn 137 (848)
|...+ ..+|+|++++ +|+++. |++.|.+..+++-+|- .+-|+..| +| +-+-..|.
T Consensus 250 ~~~~~~--~~~l~e~l~~--aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e~t-~~--~~~~~~~g 322 (381)
T 3p2y_A 250 AERAQQ--QQALEDAITK--FDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCELT-EP--GRTIVHHG 322 (381)
T ss_dssp HHHHHH--HHHHHHHHTT--CSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTC-CT--TCEEEETT
T ss_pred HHHhhh--HHHHHHHHhc--CCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccccc-cC--CCeEEECC
Confidence 11111 2368888885 444432 9999999999998886 55676666 55 21233455
Q ss_pred eeeecccCh-hhHHHHHHhhccCChh
Q psy14377 138 YSIHASLGI-ADLCVMAMQKEGTSEQ 162 (848)
Q Consensus 138 v~vfp~Lgl-~~m~~~A~~ala~~v~ 162 (848)
|.++-+.++ +.+-..|++.++..+.
T Consensus 323 V~~~~v~nlP~~vp~tAS~~~s~~l~ 348 (381)
T 3p2y_A 323 VTITSPLNLPATMPEHASELYAKNVT 348 (381)
T ss_dssp EEEECCSCTGGGSHHHHHHHHHHHHH
T ss_pred EEEEeeCCCchhhHHHHHHHHHHHHH
Confidence 555555555 4555667777775443
No 29
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=94.57 E-value=0.2 Score=54.50 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=30.3
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
+..+|||+|||.||+++|.-|.. .|-. -+|.++|+...+
T Consensus 2 ~~~~VvIIGgG~aGl~aA~~L~~----~~~~-----~~V~vie~~~~~ 40 (449)
T 3kd9_A 2 SLKKVVIIGGGAAGMSAASRVKR----LKPE-----WDVKVFEATEWV 40 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH----HCTT-----SEEEEECSSSCC
T ss_pred CcCcEEEECCcHHHHHHHHHHHH----hCcC-----CCEEEEECCCcc
Confidence 34689999999999999998874 4321 389999987644
No 30
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Probab=93.97 E-value=0.34 Score=54.93 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=42.7
Q ss_pred EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 215 LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 215 qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
++||.-.. +.|+. |.++..|...+++|+|.|..|.++|+.+... |+ +++.+|+
T Consensus 226 ~yG~~esl-vdgI~---Ratg~~L~GKTVgVIG~G~IGr~vA~~lraf----Ga-------~Viv~d~ 278 (464)
T 3n58_A 226 KYGCKESL-VDGIR---RGTDVMMAGKVAVVCGYGDVGKGSAQSLAGA----GA-------RVKVTEV 278 (464)
T ss_dssp HHHHHHHH-HHHHH---HHHCCCCTTCEEEEECCSHHHHHHHHHHHHT----TC-------EEEEECS
T ss_pred hhcchHHH-HHHHH---HhcCCcccCCEEEEECcCHHHHHHHHHHHHC----CC-------EEEEEeC
Confidence 57887777 77776 5589999999999999999999999987754 73 5777654
No 31
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Probab=93.87 E-value=0.24 Score=55.46 Aligned_cols=117 Identities=13% Similarity=0.170 Sum_probs=89.4
Q ss_pred CCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcc--hHHHHHHHccc---C---cee----------ccCCchHHHHHH
Q psy14377 630 TGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHS--AFRFLDTYRNR---Y---CVF----------NDDIQGTASVAV 691 (848)
Q Consensus 630 ~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~n--af~lL~ryr~~---~---~~F----------nDDiQGTaaV~L 691 (848)
+..|-..|...|++++.+.-||+.-|-=+|++..- ---+.++|+.. . .++ .+.-.-||-=+.
T Consensus 117 s~~el~r~~r~f~~~l~~~iG~~~dvpA~Dvgt~~~~m~~~~~~y~~~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv~ 196 (421)
T 2yfq_A 117 SERELEQLSRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAFGGSEGRNEATGFGVA 196 (421)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEEEEECTTCCHHHHHHHHHHHHHHTTTCCCGGGSCSCCGGGTCCTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCCEEecCchhcCCCCCCCcchHHHHH
Confidence 34456778899999999988999999999999742 12356666531 1 122 223345666666
Q ss_pred HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-C-----ceecCCC
Q psy14377 692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-N-----TILFQGA 748 (848)
Q Consensus 692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~-----g~i~~~r 748 (848)
-++-.+++-.|.+|++.||+|.|.|.- |...|++|.+.+.+-+.++| + |.+|...
T Consensus 197 ~~~~~~~~~~g~~l~g~~vaVqG~GnV--G~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~ 257 (421)
T 2yfq_A 197 VVVRESAKRFGIKMEDAKIAVQGFGNV--GTFTVKNIERQGGKVCAIAEWDRNEGNYALYNEN 257 (421)
T ss_dssp HHHHHHHHHTTCCGGGSCEEEECCSHH--HHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSS
T ss_pred HHHHHHHHhcCCCccCCEEEEECcCHH--HHHHHHHHHHCCCEEEEEEecCCCccceEEECCC
Confidence 677788888899999999999999999 99999999999987777899 7 9998643
No 32
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=93.75 E-value=0.12 Score=57.56 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=34.5
Q ss_pred cHHHHHcCCCcCccCceeeEEccccccccCCCCCCCHHHHHHHHhcCCCceEEecCC
Q psy14377 406 SLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSN 462 (848)
Q Consensus 406 ~L~~al~g~kP~~~~~~~v~iG~~~~~~S~~~g~FTeevvk~Ma~~~~rPIIFaLSN 462 (848)
+|.++++++ ||+|++--......|.+||+|+++.|. +.++|+-+|-
T Consensus 268 ~l~e~l~~a--------DVVI~tvlipg~~ap~Lvt~emv~~Mk---~GsVIVDvA~ 313 (405)
T 4dio_A 268 LVAEHIAKQ--------DIVITTALIPGRPAPRLVTREMLDSMK---PGSVVVDLAV 313 (405)
T ss_dssp HHHHHHHTC--------SEEEECCCCSSSCCCCCBCHHHHTTSC---TTCEEEETTG
T ss_pred HHHHHhcCC--------CEEEECCcCCCCCCCEEecHHHHhcCC---CCCEEEEEeC
Confidence 466777777 999987211112357789999999998 7899999995
No 33
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}
Probab=93.74 E-value=0.39 Score=54.35 Aligned_cols=120 Identities=17% Similarity=0.178 Sum_probs=89.9
Q ss_pred CCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcc--hHHHHHHHccc---Cc-ee----------ccCCchHHHHHHHH
Q psy14377 630 TGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHS--AFRFLDTYRNR---YC-VF----------NDDIQGTASVAVAG 693 (848)
Q Consensus 630 ~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~n--af~lL~ryr~~---~~-~F----------nDDiQGTaaV~LAg 693 (848)
+..+...|-..|+..+.+-+||.+-|-=+|++..- ---+.++|+.. .+ |+ ..--.-||-=+.-+
T Consensus 146 s~~el~r~~r~f~~eL~~~iGp~~DvpApDvGt~~~em~w~~~~y~~~~~~~~g~vTGKp~~~GGs~~r~~aTg~Gv~~~ 225 (456)
T 3r3j_A 146 SENEILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREIGYLFGQYKKLKNSFEGVLTGKNIKWGGSNIRAEATGYGVVYF 225 (456)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTSCCCSCBSCCGGGTCCTTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCCCCHHHHHHHHHHHHhhcCcccceecCCcccccCCCCCCcccchHHHHH
Confidence 44566777778999998888999999999997632 11245566532 21 11 12223567667777
Q ss_pred HHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCch
Q psy14377 694 LLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTA 753 (848)
Q Consensus 694 llaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~ 753 (848)
+-.+++..|.+|++.|++|-|.|.. |...|+.|.+.+.+-+.++| +|.||. +.|.+
T Consensus 226 ~~~~~~~~g~~l~g~~VaVQG~GnV--G~~aa~~L~e~GakvVavsD~~G~iyd--~~Gld 282 (456)
T 3r3j_A 226 AENVLKDLNDNLENKKCLVSGSGNV--AQYLVEKLIEKGAIVLTMSDSNGYILE--PNGFT 282 (456)
T ss_dssp HHHHHHTTTCCSTTCCEEEECCSHH--HHHHHHHHHHHTCCBCCEECSSCEEEC--TTCCC
T ss_pred HHHHHHHcCCCccCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEECCCCcEEC--CCCCC
Confidence 7888888899999999999999999 99999999999987777999 999995 45554
No 34
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1
Probab=93.32 E-value=0.48 Score=53.03 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=85.8
Q ss_pred CcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHH---HHHHHccc-----CceeccC----------CchHHHHHHH
Q psy14377 631 GQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFR---FLDTYRNR-----YCVFNDD----------IQGTASVAVA 692 (848)
Q Consensus 631 g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~---lL~ryr~~-----~~~FnDD----------iQGTaaV~LA 692 (848)
.+|-..|...|++++.+.-||+..|-=+|++.. ..+ +.+.|+.. ..++..+ -.-||-=+.-
T Consensus 117 ~~e~~r~~r~f~~~l~~~iG~~~dvpA~D~Gt~-~~~m~~~~~~y~~~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~~ 195 (421)
T 1v9l_A 117 QRELEELSRGYARAIAPLIGDVVDIPAPDVGTN-AQIMAWMVDEYSKIKGYNVPGVFTSKPPELWGNPVREYATGFGVAV 195 (421)
T ss_dssp HHHHHHHHHHHHHHHGGGCBTTTEEEECCTTCC-HHHHHHHHHHHHHHHTSCCGGGSCSCCSSSSCCGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCCC-HHHHHHHHHHHHHHhCCCCCCeEeccchhhCCCCCcccchHHHHHH
Confidence 345577889999999998899999999999873 222 33555331 1222222 1235555555
Q ss_pred HHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCC
Q psy14377 693 GLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGA 748 (848)
Q Consensus 693 gllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r 748 (848)
++-.+++-.|.+|++.||+|.|.|.- |...|++|.+.+.+-+.++| +|.+|...
T Consensus 196 ~~~~~~~~~g~~l~gk~vaVqG~GnV--G~~aa~~L~e~GakVVavsD~~G~i~dp~ 250 (421)
T 1v9l_A 196 ATREMAKKLWGGIEGKTVAIQGMGNV--GRWTAYWLEKMGAKVIAVSDINGVAYRKE 250 (421)
T ss_dssp HHHHHHHHHHSCCTTCEEEEECCSHH--HHHHHHHHHTTTCEEEEEECSSCEEECTT
T ss_pred HHHHHHHhcCCCcCCCEEEEECcCHH--HHHHHHHHHHCCCEEEEEECCCcEEECCC
Confidence 67777888899999999999999999 99999999999877777999 99999644
No 35
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A
Probab=92.98 E-value=0.35 Score=54.46 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=90.0
Q ss_pred CCcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchH---HHHHHHccc-----Ccee----------ccCCchHHHHHH
Q psy14377 630 TGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAF---RFLDTYRNR-----YCVF----------NDDIQGTASVAV 691 (848)
Q Consensus 630 ~g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf---~lL~ryr~~-----~~~F----------nDDiQGTaaV~L 691 (848)
+..|-..|...|++++.+--||+.-|-=+|++.. .. -+.+.|+.. -.++ .+.-.-||-=+.
T Consensus 141 s~~Eler~~r~f~~~l~~~iGp~~dvpA~DvGt~-~~~m~~~~~~y~~~~~~~~~g~vTGkp~~~GGs~~r~~aTg~Gv~ 219 (440)
T 3aog_A 141 SPGELERLTRRYTSEIGILLGPDRDIPAPDVNTG-EREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVF 219 (440)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCC-HHHHHHHHHHHHHHHTSCCGGGSSSCCGGGTCCTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcEEECCCCCCC-HHHHHHHHHHHHHhhCCCCCCeEeccchhhCCCCCCCcchHHHHH
Confidence 3455677889999999998899999999999874 32 245666331 1222 233345766666
Q ss_pred HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCC
Q psy14377 692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAG 749 (848)
Q Consensus 692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~ 749 (848)
-++-.+++-.|.+|++.||+|.|.|.- |...|++|.+.+.+-+.++| +|.+|...+
T Consensus 220 ~~~~~~~~~~g~~l~g~~vaVqGfGnV--G~~~a~~L~e~GakvVavsD~~G~i~dp~G 276 (440)
T 3aog_A 220 ITAAAAAEKIGLQVEGARVAIQGFGNV--GNAAARAFHDHGARVVAVQDHTGTVYNEAG 276 (440)
T ss_dssp HHHHHHHHHHTCCSTTCEEEEECCSHH--HHHHHHHHHHTTCEEEEEECSSCEEECTTC
T ss_pred HHHHHHHHhcCCCccCCEEEEeccCHH--HHHHHHHHHHCCCEEEEEEcCCcEEECCCC
Confidence 777788888999999999999999999 99999999999887777999 999886543
No 36
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Probab=92.86 E-value=0.59 Score=52.23 Aligned_cols=116 Identities=14% Similarity=0.154 Sum_probs=86.4
Q ss_pred CcchhHHHHHHHHHHHHhhCCceeeeeecCCCcc--hHHHHHHHcc---c--Cceec----------cCCchHHHHHHHH
Q psy14377 631 GQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHS--AFRFLDTYRN---R--YCVFN----------DDIQGTASVAVAG 693 (848)
Q Consensus 631 g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~n--af~lL~ryr~---~--~~~Fn----------DDiQGTaaV~LAg 693 (848)
.+|-..|...|++++.+.-||..-|-=+|++..- ---+.+.|+. . ..++. +.-.-||-=+.-+
T Consensus 116 ~~e~~r~~r~f~~~l~~~ig~~~dvpa~D~gt~~~~m~~~~~~y~~~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~~~ 195 (415)
T 2tmg_A 116 RRELERLSRRFFREIQVIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKVC 195 (415)
T ss_dssp HHHHHHHHHHHHHHTGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHSSCCCCSCSSCCGGGTCCTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEeCCCCCCCHHHHHHHHHHHHHhhCCCCCCeEecCchhhCCCCCcCcchHHHHHHH
Confidence 3455778889999999988898889999998642 1123455533 1 12232 2223466556667
Q ss_pred HHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHH-hccccccccc-CceecCCC
Q psy14377 694 LLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLAS-LRITKTRLSD-NTILFQGA 748 (848)
Q Consensus 694 llaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~-~~~~~~~~~d-~g~i~~~r 748 (848)
+-.+++-.|.++++.||++.|.|.- |...|++|.+ .+.+-+.++| +|.+|...
T Consensus 196 ~~~~~~~~g~~l~g~~vaVqG~GnV--G~~~a~~L~e~~GakvVavsD~~G~i~dp~ 250 (415)
T 2tmg_A 196 AGLAMDVLGIDPKKATVAVQGFGNV--GQFAALLISQELGSKVVAVSDSRGGIYNPE 250 (415)
T ss_dssp HHHHHHHTTCCTTTCEEEEECCSHH--HHHHHHHHHHTTCCEEEEEECSSCEEECTT
T ss_pred HHHHHHHcCCCcCCCEEEEECCcHH--HHHHHHHHHHhcCCEEEEEEeCCCeEECCC
Confidence 7778888999999999999999999 9999999998 8877777899 99988653
No 37
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=92.70 E-value=0.11 Score=47.96 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=27.2
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..|+|+|||.||++||..|.+ .|+ ++.++|+.
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~----~G~-------~V~v~Ek~ 34 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTA----AGH-------QVHLFDKS 34 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSS
T ss_pred CCEEEECcCHHHHHHHHHHHH----CCC-------CEEEEECC
Confidence 469999999999999999884 786 57888863
No 38
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=91.56 E-value=0.32 Score=51.16 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 219 SCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 219 A~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+.=+|..|++.+++-.+..+++.+++|+|||.+|.+++..+.. .| .++|+++|+
T Consensus 106 G~NTD~~G~~~~l~~~~~~l~~k~vlVlGaGG~g~aia~~L~~----~G------~~~v~i~~R 159 (283)
T 3jyo_A 106 GHNTDVSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT----HG------VQKLQVADL 159 (283)
T ss_dssp EECHHHHHHHHHHHHHCTTCCCSEEEEECCSHHHHHHHHHHHH----TT------CSEEEEECS
T ss_pred EecCCHHHHHHHHHHhCcCcCCCEEEEECCcHHHHHHHHHHHH----CC------CCEEEEEEC
Confidence 4556778999999988889999999999999888888776654 47 457888765
No 39
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Probab=91.39 E-value=1.4 Score=50.54 Aligned_cols=121 Identities=17% Similarity=0.260 Sum_probs=85.4
Q ss_pred CCCcchhHHHHHHHHHHHH--hhCCceeeeeecCCCcch--HHHHHHHcccC---------ceeccC---------CchH
Q psy14377 629 TTGQAYDDFIEEFMQAVVA--RYGQHVLIQFEDFANHSA--FRFLDTYRNRY---------CVFNDD---------IQGT 686 (848)
Q Consensus 629 ~~g~~y~~fvdefv~av~~--~fGp~~~IqfEDf~~~na--f~lL~ryr~~~---------~~FnDD---------iQGT 686 (848)
.+..|-..|.-.|+.++.+ -.||...|-=+|++..-. --+.+.|+... |+--.- -.-|
T Consensus 136 ~s~~El~r~~r~f~~eL~~~~~IGp~~dipApDvGt~~~eM~wm~d~y~~~~g~~~~~~~g~vTGKp~~~GGs~~r~eAT 215 (501)
T 3mw9_A 136 YTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISAT 215 (501)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTSCBTTTEECCBCTTCCHHHHHHHHHHHHHTTTTTCTTGGGSCSSCCGGGTCCTTTTTHH
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCeeEecCCCCCCHHHHHHHHHHHHHHhCCCcccCCceeeCCcccccCCCCCCCch
Confidence 3556678888999999985 778999999999986421 22677776421 111111 1234
Q ss_pred HHHHHHHHHH------HHhhhCC--cCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCCCCCch
Q psy14377 687 ASVAVAGLLA------SLRITKT--RLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTA 753 (848)
Q Consensus 687 aaV~LAglla------Alr~t~~--~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~ 753 (848)
|-=+.-++-+ +++..|. .|++.|++|.|.|.. |...|++|.+.+.+-+.++| +|.||. +.|.+
T Consensus 216 g~GV~~~~~~~l~~~~~~~~~G~~~~l~g~tVaVQG~GNV--G~~aa~~L~e~GakVVavsDs~G~iyd--~~Gid 287 (501)
T 3mw9_A 216 GRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNV--GLHSMRYLHRFGAKCITVGESDGSIWN--PDGID 287 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTTCCSSSTTCEEEEECCSHH--HHHHHHHHHHTTCEEEEEECSSCEEEC--TTCCC
T ss_pred HHHHHHHHHHHHhhhHHHHHcCCCCCcCCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEEcCCceEEC--CCCCC
Confidence 4444444443 3345675 589999999999999 99999999999988888999 999995 44554
No 40
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=90.98 E-value=0.38 Score=51.61 Aligned_cols=54 Identities=20% Similarity=0.358 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 219 SCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 219 A~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+.=+|..|++.+|+-.+.++++.+++|+|||.+|.+++..|.. .| .++|+++++
T Consensus 127 G~NTD~~Gf~~~L~~~~~~l~gk~~lVlGAGGaaraia~~L~~----~G------~~~v~v~nR 180 (312)
T 3t4e_A 127 GYNTDGTGHIRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAI----EG------IKEIKLFNR 180 (312)
T ss_dssp EECHHHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHH----TT------CSEEEEEEC
T ss_pred EeCCcHHHHHHHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHH----cC------CCEEEEEEC
Confidence 4456678999999888999999999999999888888877665 48 467888766
No 41
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=90.88 E-value=0.37 Score=51.72 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 221 VNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 221 V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
=+|..|++.+|+-.+.++++.+++|+|||.+|.+++..+.. .| .++|+++++.
T Consensus 135 NTD~~Gf~~~L~~~~~~l~gk~~lVlGaGG~g~aia~~L~~----~G------a~~V~i~nR~ 187 (315)
T 3tnl_A 135 ITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAAL----DG------VKEISIFNRK 187 (315)
T ss_dssp CCHHHHHHHHHHHTTCCCTTSEEEEECCSHHHHHHHHHHHH----TT------CSEEEEEECS
T ss_pred CCCHHHHHHHHHHcCCCccCCEEEEECCChHHHHHHHHHHH----CC------CCEEEEEECC
Confidence 35677899999888999999999999999888888876654 48 4688887763
No 42
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=90.88 E-value=0.34 Score=50.83 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHH-HHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 219 SCVNDVAGLLAS-LRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 219 A~V~~lAgll~A-l~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+.=+|..|++.+ ++-.+.++++.+++|+|||.+|.+++..|.+ .| .++|+++++
T Consensus 98 G~NTD~~G~~~~lL~~~~~~l~~k~~lvlGaGg~~~aia~~L~~----~G------~~~v~i~~R 152 (272)
T 3pwz_A 98 AENFDGIGLLRDIEENLGEPLRNRRVLLLGAGGAVRGALLPFLQ----AG------PSELVIANR 152 (272)
T ss_dssp EECCHHHHHHHHHHTTSCCCCTTSEEEEECCSHHHHHHHHHHHH----TC------CSEEEEECS
T ss_pred EecCCHHHHHHHHHHHcCCCccCCEEEEECccHHHHHHHHHHHH----cC------CCEEEEEeC
Confidence 344567799999 8888889999999999999888888876665 47 457888765
No 43
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=90.85 E-value=0.34 Score=51.05 Aligned_cols=53 Identities=26% Similarity=0.302 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 220 CVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 220 ~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.=+|..|++.+|+-.+.++++.+++|+|||.+|.+++..|.. .| .++|+++++
T Consensus 106 ~NTD~~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~----~G------~~~v~v~~R 158 (281)
T 3o8q_A 106 DNTDGEGLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLD----QQ------PASITVTNR 158 (281)
T ss_dssp ECCHHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHT----TC------CSEEEEEES
T ss_pred EecHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHh----cC------CCeEEEEEC
Confidence 344577899999888999999999999999888888776654 47 457888766
No 44
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=90.77 E-value=0.32 Score=51.42 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 220 CVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 220 ~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.=+|..|++.+|+-.+.++++.+++|+|||.+|.+++..|.. .| .++|+++++
T Consensus 102 ~NTD~~G~~~~L~~~~~~~~~k~vlvlGaGGaaraia~~L~~----~G------~~~v~v~nR 154 (282)
T 3fbt_A 102 FNTDYIGFGKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKD----NF------AKDIYVVTR 154 (282)
T ss_dssp ECCHHHHHHHHHHHTTCCCTTSEEEEECSSTTHHHHHHHHHH----TT------CSEEEEEES
T ss_pred eCCcHHHHHHHHHHcCCCccCCEEEEECCcHHHHHHHHHHHH----cC------CCEEEEEeC
Confidence 335677999999988999999999999999998888887665 47 457888766
No 45
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=90.60 E-value=0.26 Score=51.89 Aligned_cols=54 Identities=28% Similarity=0.296 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 220 CVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 220 ~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.=+|..|++.+++-.+.++++.+++|+|||.+|.+++..|.. .| .++|+++++.
T Consensus 97 ~NTD~~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~----~G------~~~v~v~~R~ 150 (277)
T 3don_A 97 YNTDGIGYVNGLKQIYEGIEDAYILILGAGGASKGIANELYK----IV------RPTLTVANRT 150 (277)
T ss_dssp ECCHHHHHHHHHHHHSTTGGGCCEEEECCSHHHHHHHHHHHT----TC------CSCCEEECSC
T ss_pred ECChHHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHH----CC------CCEEEEEeCC
Confidence 345677899999989999999999999999888888877654 47 4578887764
No 46
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Probab=90.47 E-value=0.24 Score=56.14 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=64.2
Q ss_pred cCcee----------ccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-Cce
Q psy14377 675 RYCVF----------NDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTI 743 (848)
Q Consensus 675 ~~~~F----------nDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~ 743 (848)
.+|+| .|...||+-.++.|+. |.++..|.+.+++|+|.|.- |.++|+.+...++ ++.++| +..
T Consensus 208 ~~PvinVnds~tK~~fDn~yG~~eslvdgI~---Ratg~~L~GKTVgVIG~G~I--Gr~vA~~lrafGa-~Viv~d~dp~ 281 (464)
T 3n58_A 208 PFPAINVNDSVTKSKFDNKYGCKESLVDGIR---RGTDVMMAGKVAVVCGYGDV--GKGSAQSLAGAGA-RVKVTEVDPI 281 (464)
T ss_dssp CSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---HHHCCCCTTCEEEEECCSHH--HHHHHHHHHHTTC-EEEEECSSHH
T ss_pred CCCEEeeccHhhhhhhhhhhcchHHHHHHHH---HhcCCcccCCEEEEECcCHH--HHHHHHHHHHCCC-EEEEEeCCcc
Confidence 48999 6788999999888875 56789999999999999999 9999999988875 444444 221
Q ss_pred ecCCCCCCchHHHhhhccccchhhccccCCCceEEeec
Q psy14377 744 LFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGS 781 (848)
Q Consensus 744 i~~~r~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s 781 (848)
.-.+....|... -.+++.+..+||++..+
T Consensus 282 -------~a~~A~~~G~~v--v~LeElL~~ADIVv~at 310 (464)
T 3n58_A 282 -------CALQAAMDGFEV--VTLDDAASTADIVVTTT 310 (464)
T ss_dssp -------HHHHHHHTTCEE--CCHHHHGGGCSEEEECC
T ss_pred -------hhhHHHhcCcee--ccHHHHHhhCCEEEECC
Confidence 000111123211 13566777788877654
No 47
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A
Probab=90.28 E-value=1.3 Score=50.13 Aligned_cols=115 Identities=18% Similarity=0.217 Sum_probs=85.1
Q ss_pred cchhHHHHHHHHHHHHhhCCceeeeeecCCCcch--HHHHHHHcc---c--Cceecc----------CCchHHHHHHHHH
Q psy14377 632 QAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSA--FRFLDTYRN---R--YCVFND----------DIQGTASVAVAGL 694 (848)
Q Consensus 632 ~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~na--f~lL~ryr~---~--~~~FnD----------DiQGTaaV~LAgl 694 (848)
.+-..|-..|+.++.+-.||..-|-=+|++..-. --+.++|++ . .-++-. .-.-||-=+.-++
T Consensus 138 ~e~~r~~r~f~~~L~~~ig~~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~g~~tGk~~~~GGs~~r~~aTg~Gv~~~~ 217 (449)
T 1bgv_A 138 REVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYV 217 (449)
T ss_dssp HHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTSCCGGGSSSCCGGGTCCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhheeCCCCcCCCCCCCCCHHHHHHHHHHHHHhcCCCcCceEecCCcccCCCCCcccchhHHHHHHH
Confidence 4556777778989988889999999999986521 113344443 1 122211 2234665566677
Q ss_pred HHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc-CceecCCC
Q psy14377 695 LASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NTILFQGA 748 (848)
Q Consensus 695 laAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r 748 (848)
-.+++-.|.+|++.||+|.|.|.. |...|++|.+.+.+-+.++| +|.+|...
T Consensus 218 ~~~~~~~G~~l~g~~v~VqG~GnV--G~~~a~~L~~~GakvVavsD~~G~i~dp~ 270 (449)
T 1bgv_A 218 EAVMKHENDTLVGKTVALAGFGNV--AWGAAKKLAELGAKAVTLSGPDGYIYDPE 270 (449)
T ss_dssp HHHHHHTTCCSTTCEEEECCSSHH--HHHHHHHHHHHTCEEEEEEETTEEEECTT
T ss_pred HHHHHHccCCcCCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEEeCCceEECCC
Confidence 778888899999999999999999 99999999999987778899 99999643
No 48
>3tum_A Shikimate dehydrogenase family protein; rossmann-fold NAD(P)(+)-binding site, shikimate dehydrogenas substrate binding domain, oxidoreductase; HET: NAD; 2.15A {Pseudomonas putida}
Probab=89.78 E-value=0.56 Score=49.22 Aligned_cols=54 Identities=22% Similarity=0.181 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 219 SCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 219 A~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+.=+|..|++.+++-.+.+++..|++++|||-|+.+++-.|.+ .| .++|+++++
T Consensus 104 G~NTD~~Gf~~~L~~~g~~~~~~~~lilGaGGaarai~~aL~~----~g------~~~i~i~nR 157 (269)
T 3tum_A 104 GDNVDGAGFLGAAHKHGFEPAGKRALVIGCGGVGSAIAYALAE----AG------IASITLCDP 157 (269)
T ss_dssp EECCHHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHH----TT------CSEEEEECS
T ss_pred EEEcChHHHHHHHHHhCCCcccCeEEEEecHHHHHHHHHHHHH----hC------CCeEEEeCC
Confidence 4455678999999999999999999999999999999876654 47 568888765
No 49
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=89.62 E-value=0.5 Score=53.85 Aligned_cols=59 Identities=24% Similarity=0.362 Sum_probs=48.7
Q ss_pred CCCCeE-------------EEchhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcC
Q psy14377 209 TVKPSI-------------LIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARD 275 (848)
Q Consensus 209 ~~iPvF-------------qhGTA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~ 275 (848)
.++|+| +|||.-.. +.+++ |.++..|++.+++|.|+|..|.++|..+... |.
T Consensus 225 L~iPvinvnDs~tK~~fDn~yGt~~sl-~dgi~---r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa~----GA------- 289 (488)
T 3ond_A 225 LLFPAINVNDSVTKSKFDNLYGCRHSL-PDGLM---RATDVMIAGKVAVVAGYGDVGKGCAAALKQA----GA------- 289 (488)
T ss_dssp CCSCEEECTTSHHHHTTHHHHHHHHHH-HHHHH---HHHCCCCTTCEEEEECCSHHHHHHHHHHHHT----TC-------
T ss_pred CCCceecccchhhhhHhhhhccccHHH-HHHHH---HHcCCcccCCEEEEECCCHHHHHHHHHHHHC----CC-------
Confidence 358888 67998887 88887 6799999999999999999999998877654 72
Q ss_pred cEEEEcC
Q psy14377 276 KIWMVDS 282 (848)
Q Consensus 276 ~i~~vD~ 282 (848)
+++++|+
T Consensus 290 ~Viv~D~ 296 (488)
T 3ond_A 290 RVIVTEI 296 (488)
T ss_dssp EEEEECS
T ss_pred EEEEEcC
Confidence 6888766
No 50
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=89.00 E-value=0.3 Score=51.48 Aligned_cols=94 Identities=19% Similarity=0.261 Sum_probs=60.4
Q ss_pred cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchH
Q psy14377 675 RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTAS 754 (848)
Q Consensus 675 ~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~ 754 (848)
++.-+|-| -.|++.+++-.+.++++.+++|+|||.+ |-+++..|...+++++.+.+... .+.+...
T Consensus 93 ~l~G~NTD--------~~G~~~~L~~~~~~l~~k~vlvlGaGg~--g~aia~~L~~~G~~~v~v~~R~~---~~a~~la- 158 (277)
T 3don_A 93 KWIGYNTD--------GIGYVNGLKQIYEGIEDAYILILGAGGA--SKGIANELYKIVRPTLTVANRTM---SRFNNWS- 158 (277)
T ss_dssp EEEEECCH--------HHHHHHHHHHHSTTGGGCCEEEECCSHH--HHHHHHHHHTTCCSCCEEECSCG---GGGTTCC-
T ss_pred EEEEECCh--------HHHHHHHHHHhCCCcCCCEEEEECCcHH--HHHHHHHHHHCCCCEEEEEeCCH---HHHHHHH-
Confidence 46667877 3456677777788899999999999999 99999999999887776555110 0001000
Q ss_pred HHhhhccccchhhccccCCCceEEeecCCC
Q psy14377 755 VAIAGLLASLRITKTRLSDNTILFQGSGEG 784 (848)
Q Consensus 755 ~~~~~~~~~~r~~~~~~~~~~~~~~~s~~~ 784 (848)
...-....-.+++.+.++||.+....-|
T Consensus 159 --~~~~~~~~~~~~~~~~~aDiVInaTp~G 186 (277)
T 3don_A 159 --LNINKINLSHAESHLDEFDIIINTTPAG 186 (277)
T ss_dssp --SCCEEECHHHHHHTGGGCSEEEECCC--
T ss_pred --HhcccccHhhHHHHhcCCCEEEECccCC
Confidence 0000011123455678999999766555
No 51
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=88.70 E-value=0.63 Score=48.99 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhC-CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 223 DVAGLLASLRITK-TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 223 ~lAgll~Al~~tg-~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
|..|++.+++-.+ ..++..+++|+|||.+|.+++..|.. .| .++|+++|+
T Consensus 123 d~~G~~~~l~~~~~~~l~~~~vlVlGaGg~g~aia~~L~~----~G------~~~V~v~nR 173 (297)
T 2egg_A 123 DGLGYVQALEEEMNITLDGKRILVIGAGGGARGIYFSLLS----TA------AERIDMANR 173 (297)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHT----TT------CSEEEEECS
T ss_pred CHHHHHHHHHHhCCCCCCCCEEEEECcHHHHHHHHHHHHH----CC------CCEEEEEeC
Confidence 4678889998777 78999999999999998888887654 47 457888776
No 52
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=88.17 E-value=0.85 Score=47.16 Aligned_cols=50 Identities=30% Similarity=0.440 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 223 ~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+..|++.+++-.+..++..+++|+|+|.+|.++|..+... | . +++++|+.
T Consensus 112 d~~G~~~~l~~~~~~~~~~~v~iiGaG~~g~aia~~L~~~----g------~-~V~v~~r~ 161 (275)
T 2hk9_A 112 DWIGFLKSLKSLIPEVKEKSILVLGAGGASRAVIYALVKE----G------A-KVFLWNRT 161 (275)
T ss_dssp HHHHHHHHHHHHCTTGGGSEEEEECCSHHHHHHHHHHHHH----T------C-EEEEECSS
T ss_pred CHHHHHHHHHHhCCCcCCCEEEEECchHHHHHHHHHHHHc----C------C-EEEEEECC
Confidence 4568888988888889999999999999999999887764 6 3 68887763
No 53
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Probab=87.30 E-value=1 Score=50.43 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q psy14377 218 ESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR 290 (848)
Q Consensus 218 TA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r 290 (848)
|+.=+ .-++-.+++..|.+|++.|++|+|.|..|...|+++.+. | .+-+.+.|++|-++...
T Consensus 200 Tg~Gv-~~~~~~~~~~~g~~l~g~~vaVqG~GnVG~~aa~~l~e~----G------akVVavsD~~G~iyd~~ 261 (424)
T 3k92_A 200 TAQGV-TICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFMHDA----G------AKVIGISDANGGLYNPD 261 (424)
T ss_dssp HHHHH-HHHHHHHHHHTTCCGGGCEEEEECCSHHHHHHHHHHHHH----T------CEEEEEECSSCEEECTT
T ss_pred HHHHH-HHHHHHHHHHcCCCcccCEEEEECCCHHHHHHHHHHHHC----C------CEEEEEECCCCcEECCC
Confidence 44444 557788888899999999999999999999999998765 7 45567999999999643
No 54
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=87.01 E-value=1.1 Score=46.22 Aligned_cols=50 Identities=26% Similarity=0.237 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 222 NDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 222 ~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+|..|++.+|+-.+.+++..+++|+|||.+|.++|..+... | .+++++|+
T Consensus 101 tD~~G~~~~L~~~~~~l~~k~vlViGaGg~g~a~a~~L~~~----G-------~~V~v~~R 150 (271)
T 1nyt_A 101 TDGVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSL----D-------CAVTITNR 150 (271)
T ss_dssp CHHHHHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHT----T-------CEEEEECS
T ss_pred CCHHHHHHHHHhcCcCcCCCEEEEECCcHHHHHHHHHHHHc----C-------CEEEEEEC
Confidence 34678899998888899999999999998888888876653 6 25777665
No 55
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=86.08 E-value=0.87 Score=49.65 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=35.5
Q ss_pred ccccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 5 LRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 5 l~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
-++.++--+..+|+|+|||.||+++|..|.. .|. ++.++++..-
T Consensus 2 ~~~~~~~~~~~~v~IIGaG~aGl~aA~~L~~----~g~-------~v~v~E~~~~ 45 (489)
T 2jae_A 2 GDLIGKVKGSHSVVVLGGGPAGLCSAFELQK----AGY-------KVTVLEARTR 45 (489)
T ss_dssp -CCCCCCCSCCEEEEECCSHHHHHHHHHHHH----TTC-------EEEEECSSSS
T ss_pred cchhhcccCCCCEEEECCCHHHHHHHHHHHH----CCC-------CEEEEeccCC
Confidence 4667777778899999999999999998874 663 7888887654
No 56
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=86.04 E-value=0.93 Score=46.83 Aligned_cols=49 Identities=24% Similarity=0.313 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 223 ~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
|..|++.+|+-.+..++..+++|+|||.+|.+++..+... | .+++++|+
T Consensus 102 D~~G~~~~L~~~~~~~~~~~vlvlGaGg~g~a~a~~L~~~----G-------~~v~v~~R 150 (272)
T 1p77_A 102 DGIGLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQA----Q-------QNIVLANR 150 (272)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHT----T-------CEEEEEES
T ss_pred CHHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHC----C-------CEEEEEEC
Confidence 4668999998888889999999999999999988876653 6 36777765
No 57
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=85.94 E-value=1.2 Score=45.29 Aligned_cols=47 Identities=28% Similarity=0.418 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
..|++.+++-.+.++++ +++|+|+|.+|.++|..+... | . +++++|+
T Consensus 101 ~~g~~~~l~~~~~~l~~-~v~iiG~G~~g~~~a~~l~~~----g------~-~v~v~~r 147 (263)
T 2d5c_A 101 APGFLEALKAGGIPLKG-PALVLGAGGAGRAVAFALREA----G------L-EVWVWNR 147 (263)
T ss_dssp HHHHHHHHHHTTCCCCS-CEEEECCSHHHHHHHHHHHHT----T------C-CEEEECS
T ss_pred HHHHHHHHHHhCCCCCC-eEEEECCcHHHHHHHHHHHHC----C------C-EEEEEEC
Confidence 45888888888889999 999999999999999876643 6 2 5787775
No 58
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=85.81 E-value=1.2 Score=46.46 Aligned_cols=110 Identities=14% Similarity=0.155 Sum_probs=67.9
Q ss_pred hHHHHHHHcc-cCceeccC------CchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccc
Q psy14377 665 AFRFLDTYRN-RYCVFNDD------IQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTR 737 (848)
Q Consensus 665 af~lL~ryr~-~~~~FnDD------iQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~ 737 (848)
-..+.+..++ .+.++|=. .-.+-+|+=.++..++...+..+.+.+++|+|+|.. |..+|+.+...+. ++.
T Consensus 106 ~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~~~~~l~g~~v~IiG~G~i--G~~~a~~l~~~G~-~V~ 182 (293)
T 3d4o_A 106 NTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRV--GMSVARKFAALGA-KVK 182 (293)
T ss_dssp CHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHHCSSCSTTCEEEEECCSHH--HHHHHHHHHHTTC-EEE
T ss_pred CHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHhcCCCCCCCEEEEEeeCHH--HHHHHHHHHhCCC-EEE
Confidence 3444344444 37777743 234555555566666677788999999999999999 9999999988775 444
Q ss_pred cccCceecCCCCCCchHHHhhhcc-ccchhhccccCCCceEEeecCC
Q psy14377 738 LSDNTILFQGAGEGTASVAIAGLL-ASLRITKTRLSDNTILFQGSGE 783 (848)
Q Consensus 738 ~~d~g~i~~~r~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~s~~ 783 (848)
..|.- ++........|.. .+...+++.+.++|+.+-...-
T Consensus 183 ~~dr~------~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~ 223 (293)
T 3d4o_A 183 VGARE------SDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA 223 (293)
T ss_dssp EEESS------HHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS
T ss_pred EEECC------HHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh
Confidence 44411 1101111222321 1223466778899998876644
No 59
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=85.29 E-value=1.3 Score=47.33 Aligned_cols=71 Identities=13% Similarity=0.168 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhhCCcCCCceEEecCcch-hhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchh
Q psy14377 688 SVAVAGLLASLRITKTRLSDNTILFQGAGE-GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRI 766 (848)
Q Consensus 688 aV~LAgllaAlr~t~~~l~d~riv~~GAG~-A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~ 766 (848)
-+|-.|++..++-.+.+|++.++|++|+|. . |-.+|.+|....++ +.+|+. + .+.
T Consensus 141 PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iV--G~p~A~lL~~~gAt-Vtv~h~------~---------------t~~ 196 (285)
T 3p2o_A 141 PCTPLGVMKLLKAYEIDLEGKDAVIIGASNIV--GRPMATMLLNAGAT-VSVCHI------K---------------TKD 196 (285)
T ss_dssp CHHHHHHHHHHHHTTCCCTTCEEEEECCCTTT--HHHHHHHHHHTTCE-EEEECT------T---------------CSC
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCchH--HHHHHHHHHHCCCe-EEEEeC------C---------------chh
Confidence 357788899999999999999999999876 7 99999999988754 554541 0 145
Q ss_pred hccccCCCceEEeecC
Q psy14377 767 TKTRLSDNTILFQGSG 782 (848)
Q Consensus 767 ~~~~~~~~~~~~~~s~ 782 (848)
+++.+..|||.|...+
T Consensus 197 L~~~~~~ADIVI~Avg 212 (285)
T 3p2o_A 197 LSLYTRQADLIIVAAG 212 (285)
T ss_dssp HHHHHTTCSEEEECSS
T ss_pred HHHHhhcCCEEEECCC
Confidence 7788999999998765
No 60
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Probab=84.81 E-value=0.81 Score=47.51 Aligned_cols=48 Identities=25% Similarity=0.300 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 223 ~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
|..|++.+++-.+.++++.+++|.|||.+|.++|..+.. .| +++++|+
T Consensus 111 d~~G~~~~L~~~~~~l~~k~vlV~GaGgiG~aia~~L~~----~G--------~V~v~~r 158 (287)
T 1nvt_A 111 DGIGARMALEEEIGRVKDKNIVIYGAGGAARAVAFELAK----DN--------NIIIANR 158 (287)
T ss_dssp HHHHHHHHHHHHHCCCCSCEEEEECCSHHHHHHHHHHTS----SS--------EEEEECS
T ss_pred CHHHHHHHHHHhCCCcCCCEEEEECchHHHHHHHHHHHH----CC--------CEEEEEC
Confidence 578999999988889999999999999888777776553 34 5777665
No 61
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=84.35 E-value=1.5 Score=46.82 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhhCCcCCCceEEecCcch-hhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchhh
Q psy14377 689 VAVAGLLASLRITKTRLSDNTILFQGAGE-GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRIT 767 (848)
Q Consensus 689 V~LAgllaAlr~t~~~l~d~riv~~GAG~-A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~~ 767 (848)
+|-.|++..++-.+.+|++.++|++|+|. . |-.+|.+|....++ +.+|+ +. .+.+
T Consensus 143 cTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iV--G~p~A~lL~~~gAt-Vtv~h-----s~----------------t~~L 198 (285)
T 3l07_A 143 CTPKGIMTMLREYGIKTEGAYAVVVGASNVV--GKPVSQLLLNAKAT-VTTCH-----RF----------------TTDL 198 (285)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEEECCCTTT--HHHHHHHHHHTTCE-EEEEC-----TT----------------CSSH
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCchh--HHHHHHHHHHCCCe-EEEEe-----CC----------------chhH
Confidence 57778889999999999999999999876 8 99999999988753 45443 10 1457
Q ss_pred ccccCCCceEEeecC
Q psy14377 768 KTRLSDNTILFQGSG 782 (848)
Q Consensus 768 ~~~~~~~~~~~~~s~ 782 (848)
++.+.+|||.|...+
T Consensus 199 ~~~~~~ADIVI~Avg 213 (285)
T 3l07_A 199 KSHTTKADILIVAVG 213 (285)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred HHhcccCCEEEECCC
Confidence 788999999998765
No 62
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=83.97 E-value=0.89 Score=48.22 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=27.2
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
||||+|||.||+.||+-|.+ .|-+ -+|.++|++-
T Consensus 4 kVvIIG~G~AG~~aA~~L~~----~~~~-----~~Vtlie~~~ 37 (401)
T 3vrd_B 4 KVVVVGGGTGGATAAKYIKL----ADPS-----IEVTLIEPNE 37 (401)
T ss_dssp EEEEECCSHHHHHHHHHHHH----HCTT-----SEEEEECSCS
T ss_pred EEEEECCcHHHHHHHHHHHh----cCcC-----CeEEEEeCCC
Confidence 69999999999999998874 4533 2799998754
No 63
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=83.81 E-value=0.99 Score=41.53 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=25.8
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.|+|+|||.||+.+|..|.+. |+ ++.++|+.
T Consensus 4 dV~IIGaGpaGL~aA~~La~~----G~-------~V~v~Ek~ 34 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAA----GH-------QVHLFDKS 34 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHT----TC-------CEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHC----CC-------CEEEEECC
Confidence 599999999999999987764 85 48888873
No 64
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=83.46 E-value=0.9 Score=46.17 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=29.0
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++.+|||+|||.||+++|..|.. .|. +|.++|+..
T Consensus 2 ~~~~vvIIG~G~aGl~~A~~l~~----~g~-------~v~vie~~~ 36 (357)
T 4a9w_A 2 DSVDVVVIGGGQSGLSAGYFLRR----SGL-------SYVILDAEA 36 (357)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH----SSC-------CEEEECCSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHH----CCC-------CEEEEECCC
Confidence 45789999999999999998874 674 689998764
No 65
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=83.43 E-value=1.2 Score=46.18 Aligned_cols=52 Identities=23% Similarity=0.418 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 218 ESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 218 TA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.+.=+|..|++.+|+-. .+++ +++|+|||.+|.+++..|.. .| .++|+++|+
T Consensus 89 ~G~NTD~~G~~~~l~~~--~~~~-~vliiGaGg~a~ai~~~L~~----~G------~~~I~v~nR 140 (253)
T 3u62_A 89 KGYNTDWVGVVKSLEGV--EVKE-PVVVVGAGGAARAVIYALLQ----MG------VKDIWVVNR 140 (253)
T ss_dssp EEECCHHHHHHHHTTTC--CCCS-SEEEECCSHHHHHHHHHHHH----TT------CCCEEEEES
T ss_pred EEEcchHHHHHHHHHhc--CCCC-eEEEECcHHHHHHHHHHHHH----cC------CCEEEEEeC
Confidence 44455677899998754 5788 99999999999999887665 47 357888877
No 66
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=83.38 E-value=1.7 Score=46.84 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhhhCCcCCCceEEecCcc-hhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchh
Q psy14377 688 SVAVAGLLASLRITKTRLSDNTILFQGAG-EGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRI 766 (848)
Q Consensus 688 aV~LAgllaAlr~t~~~l~d~riv~~GAG-~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~ 766 (848)
-+|-.|++-.++-.+.+++..++|++|+| .. |.-+|.++..... .+.+|+. ..+.
T Consensus 146 PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iV--G~p~A~lL~~~gA-tVtv~hs---------------------~t~~ 201 (301)
T 1a4i_A 146 PCTPKGCLELIKETGVPIAGRHAVVVGRSKIV--GAPMHDLLLWNNA-TVTTCHS---------------------KTAH 201 (301)
T ss_dssp CHHHHHHHHHHHTTTCCCTTCEEEEECCCTTT--HHHHHHHHHHTTC-EEEEECT---------------------TCSS
T ss_pred CchHHHHHHHHHHcCCCCCCCEEEEECCCchH--HHHHHHHHHhCCC-eEEEEEC---------------------Cccc
Confidence 35677899999999999999999999999 57 9999999998774 3555541 0245
Q ss_pred hccccCCCceEEeecCC
Q psy14377 767 TKTRLSDNTILFQGSGE 783 (848)
Q Consensus 767 ~~~~~~~~~~~~~~s~~ 783 (848)
+++.+.+|||.|+..+.
T Consensus 202 L~~~~~~ADIVI~Avg~ 218 (301)
T 1a4i_A 202 LDEEVNKGDILVVATGQ 218 (301)
T ss_dssp HHHHHTTCSEEEECCCC
T ss_pred HHHHhccCCEEEECCCC
Confidence 77888999999987665
No 67
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=83.21 E-value=1.2 Score=46.47 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=27.2
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.||+|+|||.||+++|..|.. .|+ ++.++|+.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~----~G~-------~v~v~Er~ 33 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRK----HGI-------KVTIYERN 33 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHH----TTC-------EEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHh----CCC-------CEEEEecC
Confidence 699999999999999998874 786 57777763
No 68
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=82.80 E-value=1.2 Score=47.14 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=46.3
Q ss_pred cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 675 RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 675 ~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
++.-+|-|- .|++.+++-.+.++++.+++++|||.+ |-+++..|...+++++.+.+
T Consensus 98 ~l~G~NTD~--------~G~~~~L~~~~~~~~~k~vlvlGaGGa--araia~~L~~~G~~~v~v~n 153 (282)
T 3fbt_A 98 GISGFNTDY--------IGFGKMLSKFRVEIKNNICVVLGSGGA--ARAVLQYLKDNFAKDIYVVT 153 (282)
T ss_dssp CEEEECCHH--------HHHHHHHHHTTCCCTTSEEEEECSSTT--HHHHHHHHHHTTCSEEEEEE
T ss_pred EEEeeCCcH--------HHHHHHHHHcCCCccCCEEEEECCcHH--HHHHHHHHHHcCCCEEEEEe
Confidence 355566662 688888888888999999999999999 99999999998877766554
No 69
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=82.77 E-value=0.93 Score=46.83 Aligned_cols=84 Identities=23% Similarity=0.208 Sum_probs=55.8
Q ss_pred HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchH-HHhhhccccchhhccc
Q psy14377 692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTAS-VAIAGLLASLRITKTR 770 (848)
Q Consensus 692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~-~~~~~~~~~~r~~~~~ 770 (848)
.|++.+++-.+.++++.+++|+|+|.+ |-++|..|...+. ++.+++.- ++.... .+..|..... .+++.
T Consensus 114 ~G~~~~l~~~~~~~~~~~v~iiGaG~~--g~aia~~L~~~g~-~V~v~~r~------~~~~~~l~~~~g~~~~~-~~~~~ 183 (275)
T 2hk9_A 114 IGFLKSLKSLIPEVKEKSILVLGAGGA--SRAVIYALVKEGA-KVFLWNRT------KEKAIKLAQKFPLEVVN-SPEEV 183 (275)
T ss_dssp HHHHHHHHHHCTTGGGSEEEEECCSHH--HHHHHHHHHHHTC-EEEEECSS------HHHHHHHTTTSCEEECS-CGGGT
T ss_pred HHHHHHHHHhCCCcCCCEEEEECchHH--HHHHHHHHHHcCC-EEEEEECC------HHHHHHHHHHcCCeeeh-hHHhh
Confidence 377778877788899999999999999 9999999998876 55444411 000011 1111221111 45677
Q ss_pred cCCCceEEeecCCCc
Q psy14377 771 LSDNTILFQGSGEGT 785 (848)
Q Consensus 771 ~~~~~~~~~~s~~~~ 785 (848)
+.++|+.+-...-+.
T Consensus 184 ~~~aDiVi~atp~~~ 198 (275)
T 2hk9_A 184 IDKVQVIVNTTSVGL 198 (275)
T ss_dssp GGGCSEEEECSSTTS
T ss_pred hcCCCEEEEeCCCCC
Confidence 889999988776665
No 70
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=82.48 E-value=1.2 Score=46.18 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=29.6
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++.+|||+|||.||+++|..+.. .|. ++|.++|+..
T Consensus 3 ~~~~vvIIGaG~aGl~aA~~l~~----~g~------~~v~lie~~~ 38 (369)
T 3d1c_A 3 QHHKVAIIGAGAAGIGMAITLKD----FGI------TDVIILEKGT 38 (369)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH----TTC------CCEEEECSSS
T ss_pred ccCcEEEECcCHHHHHHHHHHHH----cCC------CcEEEEecCC
Confidence 45689999999999999998874 664 2799999874
No 71
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=81.85 E-value=1.4 Score=46.20 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=40.4
Q ss_pred HHHHHHH-HhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 691 VAGLLAS-LRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 691 LAgllaA-lr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
..|++.+ ++-.+.++++.+++|+|||.+ |-+++..|.+.+++++.+.+
T Consensus 103 ~~G~~~~lL~~~~~~l~~k~~lvlGaGg~--~~aia~~L~~~G~~~v~i~~ 151 (272)
T 3pwz_A 103 GIGLLRDIEENLGEPLRNRRVLLLGAGGA--VRGALLPFLQAGPSELVIAN 151 (272)
T ss_dssp HHHHHHHHHTTSCCCCTTSEEEEECCSHH--HHHHHHHHHHTCCSEEEEEC
T ss_pred HHHHHHHHHHHcCCCccCCEEEEECccHH--HHHHHHHHHHcCCCEEEEEe
Confidence 3578888 887788999999999999999 99999999998876665444
No 72
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Probab=81.72 E-value=2 Score=44.88 Aligned_cols=52 Identities=10% Similarity=0.196 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 220 CVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 220 ~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.-+|..|+..+++-.+.. ...+++|+|||.+|.+++..|.. .| .++|+++++
T Consensus 100 ~NTD~~G~~~~l~~~~~~-~~~~vlvlGaGgaarav~~~L~~----~G------~~~i~v~nR 151 (271)
T 1npy_A 100 YNTDYIAIVKLIEKYHLN-KNAKVIVHGSGGMAKAVVAAFKN----SG------FEKLKIYAR 151 (271)
T ss_dssp ECHHHHHHHHHHHHTTCC-TTSCEEEECSSTTHHHHHHHHHH----TT------CCCEEEECS
T ss_pred ecCCHHHHHHHHHHhCCC-CCCEEEEECCcHHHHHHHHHHHH----CC------CCEEEEEeC
Confidence 344667888888766654 56899999999999999887664 37 457888765
No 73
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=81.60 E-value=1.8 Score=46.45 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhhhCCcCCCceEEecCcch-hhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchh
Q psy14377 688 SVAVAGLLASLRITKTRLSDNTILFQGAGE-GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRI 766 (848)
Q Consensus 688 aV~LAgllaAlr~t~~~l~d~riv~~GAG~-A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~ 766 (848)
-+|-.|++..++-.+.+|+..++|++|+|. . |..+|.+|....++ +.+|+. ++. .
T Consensus 146 PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iV--G~p~A~lL~~~gAt-Vtv~~~------~T~---------------~ 201 (300)
T 4a26_A 146 PCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIV--GAPVAALLMKENAT-VTIVHS------GTS---------------T 201 (300)
T ss_dssp CHHHHHHHHHHHHHTCCCTTCEEEEECCCTTT--HHHHHHHHHHTTCE-EEEECT------TSC---------------H
T ss_pred CCCHHHHHHHHHHcCCCCCCCEEEEECCCchH--HHHHHHHHHHCCCe-EEEEeC------CCC---------------C
Confidence 357778889999999999999999999876 8 99999999988753 554542 111 3
Q ss_pred hc--cccCCCceEEeecCC
Q psy14377 767 TK--TRLSDNTILFQGSGE 783 (848)
Q Consensus 767 ~~--~~~~~~~~~~~~s~~ 783 (848)
++ +.+.+|||.|...+.
T Consensus 202 l~l~~~~~~ADIVI~Avg~ 220 (300)
T 4a26_A 202 EDMIDYLRTADIVIAAMGQ 220 (300)
T ss_dssp HHHHHHHHTCSEEEECSCC
T ss_pred chhhhhhccCCEEEECCCC
Confidence 44 788999999987664
No 74
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=81.53 E-value=1.3 Score=46.49 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCC-chHH-Hhhhc--cccchh
Q psy14377 691 VAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEG-TASV-AIAGL--LASLRI 766 (848)
Q Consensus 691 LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~-~~~~-~~~~~--~~~~r~ 766 (848)
..|++.+++-.+.++++.+++|+|||.+ |-+++..|...+++++.+.+ |... .... +..+- ......
T Consensus 110 ~~G~~~~L~~~~~~l~~k~vlvlGaGg~--g~aia~~L~~~G~~~v~v~~-------R~~~~a~~la~~~~~~~~~~~~~ 180 (281)
T 3o8q_A 110 GEGLVQDLLAQQVLLKGATILLIGAGGA--ARGVLKPLLDQQPASITVTN-------RTFAKAEQLAELVAAYGEVKAQA 180 (281)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEECCSHH--HHHHHHHHHTTCCSEEEEEE-------SSHHHHHHHHHHHGGGSCEEEEE
T ss_pred HHHHHHHHHHhCCCccCCEEEEECchHH--HHHHHHHHHhcCCCeEEEEE-------CCHHHHHHHHHHhhccCCeeEee
Confidence 3567778887788999999999999999 99999999998876665544 1111 1111 11110 011123
Q ss_pred hccccCCCceEEeecCCCc
Q psy14377 767 TKTRLSDNTILFQGSGEGT 785 (848)
Q Consensus 767 ~~~~~~~~~~~~~~s~~~~ 785 (848)
+++.-.++||.+....-|.
T Consensus 181 ~~~l~~~aDiIInaTp~gm 199 (281)
T 3o8q_A 181 FEQLKQSYDVIINSTSASL 199 (281)
T ss_dssp GGGCCSCEEEEEECSCCCC
T ss_pred HHHhcCCCCEEEEcCcCCC
Confidence 3443478999998776664
No 75
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=81.41 E-value=1.6 Score=43.80 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=28.4
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..+|||+|||.||+++|.-+.. .|. ++.++|+.
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~----~g~-------~v~lie~~ 47 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSAR----YML-------KTLVIGET 47 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESS
T ss_pred ccCEEEECccHHHHHHHHHHHH----CCC-------cEEEEecc
Confidence 4689999999999999998874 564 68999987
No 76
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=81.40 E-value=1.4 Score=46.85 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=34.7
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
++|++.||+|+|+|..|..+|..|+.+ | ..+|.++|.+=
T Consensus 32 ~kL~~~~VlVvGaGGlGs~va~~La~a----G------VG~i~lvD~D~ 70 (292)
T 3h8v_A 32 EKIRTFAVAIVGVGGVGSVTAEMLTRC----G------IGKLLLFDYDK 70 (292)
T ss_dssp CGGGGCEEEEECCSHHHHHHHHHHHHH----T------CSEEEEECCCB
T ss_pred HHHhCCeEEEECcCHHHHHHHHHHHHc----C------CCEEEEECCCc
Confidence 578999999999999999999998877 8 57999999863
No 77
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A
Probab=81.37 E-value=6.4 Score=43.88 Aligned_cols=113 Identities=17% Similarity=0.242 Sum_probs=82.2
Q ss_pred CcchhHHHHHHHHHHHHhhCCceeeeeecCCCcchHH---HHHHHcc---cC-c---eeccC----------CchHHHHH
Q psy14377 631 GQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFR---FLDTYRN---RY-C---VFNDD----------IQGTASVA 690 (848)
Q Consensus 631 g~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~---lL~ryr~---~~-~---~FnDD----------iQGTaaV~ 690 (848)
.+|-..|...|++++.+--||...|-=+|++.. ..+ +.+.|.+ .. + ++-.+ -.-||-=+
T Consensus 116 ~~e~~~~~r~f~~~l~~~~g~~~dv~a~D~gt~-~~~m~~~~~~y~~~~~~~~~~~~~~tGk~~~~GGs~~~~~aTg~Gv 194 (419)
T 1gtm_A 116 DREKERLARGYIRAIYDVISPYEDIPAPDVYTN-PQIMAWMMDEYETISRRKTPAFGIITGKPLSIGGSLGRIEATARGA 194 (419)
T ss_dssp HHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCC-HHHHHHHHHHHHHHHTTSSCGGGGCSSCCGGGTCCTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEeCCCCCCC-HHHHHHHHHHHHHhhCCCCCccceEecCcchhCCCCCCCcchhhHH
Confidence 345577888999999998889888999999873 322 2345533 21 2 33322 23466666
Q ss_pred HHHHHHHHhhhCCc-CCCceEEecCcchhhHHHHHHHHHHH-hccccccccc-CceecC
Q psy14377 691 VAGLLASLRITKTR-LSDNTILFQGAGEGTASVAVAGLLAS-LRITKTRLSD-NTILFQ 746 (848)
Q Consensus 691 LAgllaAlr~t~~~-l~d~riv~~GAG~A~~g~giA~ll~~-~~~~~~~~~d-~g~i~~ 746 (848)
.-++-.+++-.|.+ |++.++.|.|.|.- |..+|+++.. .+++-+..+| .|.+|.
T Consensus 195 ~~~~~~~~~~~G~~~l~gktvgI~G~G~V--G~~vA~~l~~~~G~kVv~~sD~~g~~~~ 251 (419)
T 1gtm_A 195 SYTIREAAKVLGWDTLKGKTIAIQGYGNA--GYYLAKIMSEDFGMKVVAVSDSKGGIYN 251 (419)
T ss_dssp HHHHHHHHHHTTCSCSTTCEEEEECCSHH--HHHHHHHHHHTTCCEEEEEECSSCEEEE
T ss_pred HHHHHHHHHHhCCcccCCCEEEEEcCCHH--HHHHHHHHHHhcCCEEEEEeCCCccccC
Confidence 66777888889999 99999999999999 9999999998 7766555666 665553
No 78
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=81.06 E-value=1.5 Score=47.08 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=45.4
Q ss_pred cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 675 RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 675 ~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
++.=+|=|- .|++.+++-.+.++++.+++++|||.+ |-+++..|...+++++.+.+
T Consensus 124 ~l~G~NTD~--------~Gf~~~L~~~~~~l~gk~~lVlGAGGa--araia~~L~~~G~~~v~v~n 179 (312)
T 3t4e_A 124 YLRGYNTDG--------TGHIRAIKESGFDMRGKTMVLLGAGGA--ATAIGAQAAIEGIKEIKLFN 179 (312)
T ss_dssp EEEEECHHH--------HHHHHHHHHTTCCCTTCEEEEECCSHH--HHHHHHHHHHTTCSEEEEEE
T ss_pred EEEEeCCcH--------HHHHHHHHhcCCCcCCCEEEEECcCHH--HHHHHHHHHHcCCCEEEEEE
Confidence 466677773 456777777788899999999999999 99999999998887766544
No 79
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=81.01 E-value=1.5 Score=46.95 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=46.5
Q ss_pred cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 675 RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 675 ~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
++.=+|-| -.|++.+++-.+.++++.+++++|||.+ |-++|..|...+++++.+.+
T Consensus 130 ~l~G~NTD--------~~Gf~~~L~~~~~~l~gk~~lVlGaGG~--g~aia~~L~~~Ga~~V~i~n 185 (315)
T 3tnl_A 130 VLTGHITD--------GTGYMRALKEAGHDIIGKKMTICGAGGA--ATAICIQAALDGVKEISIFN 185 (315)
T ss_dssp EEEEECCH--------HHHHHHHHHHTTCCCTTSEEEEECCSHH--HHHHHHHHHHTTCSEEEEEE
T ss_pred EEEEeCCC--------HHHHHHHHHHcCCCccCCEEEEECCChH--HHHHHHHHHHCCCCEEEEEE
Confidence 36668888 4567778887788999999999999999 99999999998877766544
No 80
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=80.85 E-value=1.6 Score=45.85 Aligned_cols=85 Identities=15% Similarity=0.143 Sum_probs=56.2
Q ss_pred HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchH--HHhhh-----cc---
Q psy14377 692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTAS--VAIAG-----LL--- 761 (848)
Q Consensus 692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~--~~~~~-----~~--- 761 (848)
.|++.+++-.+.++++.+++++|||.+ |-+++..|...+++++.+.+ |...-.. .+..+ ..
T Consensus 112 ~G~~~~l~~~~~~l~~k~vlVlGaGG~--g~aia~~L~~~G~~~v~i~~-------R~~~~a~~la~~~~~~~~~~~i~~ 182 (283)
T 3jyo_A 112 SGFGRGMEEGLPNAKLDSVVQVGAGGV--GNAVAYALVTHGVQKLQVAD-------LDTSRAQALADVINNAVGREAVVG 182 (283)
T ss_dssp HHHHHHHHHHCTTCCCSEEEEECCSHH--HHHHHHHHHHTTCSEEEEEC-------SSHHHHHHHHHHHHHHHTSCCEEE
T ss_pred HHHHHHHHHhCcCcCCCEEEEECCcHH--HHHHHHHHHHCCCCEEEEEE-------CCHHHHHHHHHHHHhhcCCceEEE
Confidence 567778887788899999999999999 99999999998876665444 2211111 11111 00
Q ss_pred ccchhhccccCCCceEEeecCCCc
Q psy14377 762 ASLRITKTRLSDNTILFQGSGEGT 785 (848)
Q Consensus 762 ~~~r~~~~~~~~~~~~~~~s~~~~ 785 (848)
.+.-.+++.+.++||.+..+.-|.
T Consensus 183 ~~~~~l~~~l~~~DiVInaTp~Gm 206 (283)
T 3jyo_A 183 VDARGIEDVIAAADGVVNATPMGM 206 (283)
T ss_dssp ECSTTHHHHHHHSSEEEECSSTTS
T ss_pred cCHHHHHHHHhcCCEEEECCCCCC
Confidence 011134456778999997766554
No 81
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=80.43 E-value=1.6 Score=43.41 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=27.2
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.+|||+|||.||+++|..|.. .|. ++.++|+.
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~----~g~-------~v~lie~~ 34 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGR----ARK-------NILLVDAG 34 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHH----TTC-------CEEEEECC
T ss_pred CCEEEECCCHHHHHHHHHHHh----CCC-------CEEEEeCC
Confidence 589999999999999998874 674 68999974
No 82
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*
Probab=80.39 E-value=3.7 Score=42.35 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=46.6
Q ss_pred EEEchhhHHHHHHHHHHHHHh-CCcCCCceEEEec-cchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 214 ILIGESCVNDVAGLLASLRIT-KTRLSDNTILFQG-AGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 214 FqhGTA~V~~lAgll~Al~~t-g~~l~d~riv~~G-AGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+....+.-+|..|++.+++-. +.+++..+++|.| +|.+|.+++..+.+. | . +++++|+
T Consensus 92 ~~~~~G~nTd~~g~~~~l~~~~~~~l~gk~vlVtGaaGGiG~aia~~L~~~----G------~-~V~i~~R 151 (287)
T 1lu9_A 92 MLDSNGSNTTAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGE----G------A-EVVLCGR 151 (287)
T ss_dssp EECSTTHHHHHHHHHHHHHHHTTSCCTTCEEEEETCSSHHHHHHHHHHHHT----T------C-EEEEEES
T ss_pred ecCCCcCCchHHHHHHHHHHhhccCCCCCEEEEECCCcHHHHHHHHHHHHC----c------C-EEEEEEC
Confidence 455667777889999999877 7889999999999 899999999877653 7 2 3888766
No 83
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=80.29 E-value=1.6 Score=47.23 Aligned_cols=120 Identities=20% Similarity=0.196 Sum_probs=72.0
Q ss_pred hCCcCCCceEEecCcch-hhHHHHHHHHHHHhccccccccc-CceecCCCCCCchHHHhhhcc-----ccchhhccccCC
Q psy14377 701 TKTRLSDNTILFQGAGE-GTASVAVAGLLASLRITKTRLSD-NTILFQGAGEGTASVAIAGLL-----ASLRITKTRLSD 773 (848)
Q Consensus 701 t~~~l~d~riv~~GAG~-A~~g~giA~ll~~~~~~~~~~~d-~g~i~~~r~~~~~~~~~~~~~-----~~~r~~~~~~~~ 773 (848)
.+.++...++|++|+|. . |--+|+++...+. .+.+|+ +..--..|.+.+... .+.. ++...+++.+.+
T Consensus 171 ~g~~l~gk~vvVIG~G~iV--G~~~A~~L~~~gA-tVtv~nR~~~~l~~ra~~la~~--~~~~t~~~~t~~~~L~e~l~~ 245 (320)
T 1edz_A 171 EGNRLYGKKCIVINRSEIV--GRPLAALLANDGA-TVYSVDVNNIQKFTRGESLKLN--KHHVEDLGEYSEDLLKKCSLD 245 (320)
T ss_dssp TTCTTTTCEEEEECCCTTT--HHHHHHHHHTTSC-EEEEECSSEEEEEESCCCSSCC--CCEEEEEEECCHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECCCcch--HHHHHHHHHHCCC-EEEEEeCchHHHHhHHHHHhhh--cccccccccccHhHHHHHhcc
Confidence 67799999999999994 6 8899999999885 477777 433222233333211 1112 233678899999
Q ss_pred CceEEeecCCCcchhhhhhhhheeeeecccccccceeecccccccchhhHHHHHHHhHhhhcceeecccccc
Q psy14377 774 NTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTILFQGAGEDRNERLFYRLLSEYVVELMPIVYTPTVGL 845 (848)
Q Consensus 774 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~p~~y~p~~~~ 845 (848)
|||.|+..+.- .+-|++.-+....++.--.. +|| +.+.+.+. .-.|||.||.
T Consensus 246 ADIVIsAtg~p-----------~~vI~~e~vk~GavVIDVgi-~rD-------~d~~v~~~-a~~itPvVGp 297 (320)
T 1edz_A 246 SDVVITGVPSE-----------NYKFPTEYIKEGAVCINFAC-TKN-------FSDDVKEK-ASLYVPMTGK 297 (320)
T ss_dssp CSEEEECCCCT-----------TCCBCTTTSCTTEEEEECSS-SCC-------BCGGGGTT-EEEEESCCHH
T ss_pred CCEEEECCCCC-----------cceeCHHHcCCCeEEEEcCC-Ccc-------cchhHHhh-CCeeCCCccH
Confidence 99999766541 12355555544333322222 331 01233443 5669998873
No 84
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=80.11 E-value=3 Score=45.23 Aligned_cols=45 Identities=11% Similarity=0.137 Sum_probs=34.5
Q ss_pred HHHHHHhhhCC----------cCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 693 GLLASLRITKT----------RLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 693 gllaAlr~t~~----------~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
+++.+.+..++ .+...+++|+|+|.+ |.++++.+...+++ +...|
T Consensus 148 av~~~~~~~~~~~~~~~~~~~~l~g~~V~ViGaG~i--G~~aa~~a~~~Ga~-V~~~d 202 (384)
T 1l7d_A 148 AVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVA--GLQAIATAKRLGAV-VMATD 202 (384)
T ss_dssp HHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHH--HHHHHHHHHHTTCE-EEEEC
T ss_pred HHHHHHHHhhhcccchhccCCCCCCCEEEEECCCHH--HHHHHHHHHHCCCE-EEEEe
Confidence 45555555443 678999999999999 99999999888863 55554
No 85
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=79.71 E-value=1.7 Score=43.89 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=28.1
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
..+|||+|||.||+++|.-+.. .|. +|.++|+..
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~----~g~-------~v~lie~~~ 40 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGM----RQA-------SVKIIESLP 40 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSS
T ss_pred cceEEEECCCHHHHHHHHHHHH----CCC-------CEEEEEcCC
Confidence 3589999999999999998774 564 689998863
No 86
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=79.61 E-value=1.8 Score=45.99 Aligned_cols=70 Identities=9% Similarity=0.101 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhhhCCcCCCceEEecCcch-hhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchh
Q psy14377 688 SVAVAGLLASLRITKTRLSDNTILFQGAGE-GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRI 766 (848)
Q Consensus 688 aV~LAgllaAlr~t~~~l~d~riv~~GAG~-A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~ 766 (848)
-+|-.|++..++-.+ |+..++|++|+|. . |..+|.+|.....+ +.+|+. + .+.
T Consensus 133 PcTp~gv~~lL~~~~--l~Gk~vvVvG~s~iV--G~plA~lL~~~gAt-Vtv~~~------~---------------t~~ 186 (276)
T 3ngx_A 133 PATPRAVIDIMDYYG--YHENTVTIVNRSPVV--GRPLSMMLLNRNYT-VSVCHS------K---------------TKD 186 (276)
T ss_dssp CHHHHHHHHHHHHHT--CCSCEEEEECCCTTT--HHHHHHHHHHTTCE-EEEECT------T---------------CSC
T ss_pred CCcHHHHHHHHHHhC--cCCCEEEEEcCChHH--HHHHHHHHHHCCCe-EEEEeC------C---------------ccc
Confidence 357788889999888 9999999999984 8 99999999988753 444431 0 156
Q ss_pred hccccCCCceEEeecCC
Q psy14377 767 TKTRLSDNTILFQGSGE 783 (848)
Q Consensus 767 ~~~~~~~~~~~~~~s~~ 783 (848)
+++.+..|||.|+..+.
T Consensus 187 L~~~~~~ADIVI~Avg~ 203 (276)
T 3ngx_A 187 IGSMTRSSKIVVVAVGR 203 (276)
T ss_dssp HHHHHHHSSEEEECSSC
T ss_pred HHHhhccCCEEEECCCC
Confidence 77888999999987654
No 87
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=79.39 E-value=1.1 Score=48.75 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=33.5
Q ss_pred cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+|++.||+|+|||..|..+|..|+.+ | .++|.++|.+=
T Consensus 31 kL~~~~VlIvGaGGlGs~va~~La~a----G------Vg~ItlvD~D~ 68 (340)
T 3rui_A 31 IIKNTKVLLLGAGTLGCYVSRALIAW----G------VRKITFVDNGT 68 (340)
T ss_dssp HHHTCEEEEECCSHHHHHHHHHHHHT----T------CCEEEEECCCB
T ss_pred HHhCCEEEEECCCHHHHHHHHHHHHc----C------CCEEEEecCCE
Confidence 57889999999999999999998876 8 57999999863
No 88
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=79.37 E-value=1.9 Score=45.49 Aligned_cols=39 Identities=18% Similarity=0.079 Sum_probs=29.4
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
.+++..+|+|+|||.||+++|..|.. .|+ ++.++|+.-.
T Consensus 7 ~~m~~~dVvIVGaG~aGl~~A~~L~~----~G~-------~v~viE~~~~ 45 (379)
T 3alj_A 7 TPGKTRRAEVAGGGFAGLTAAIALKQ----NGW-------DVRLHEKSSE 45 (379)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHH----TTC-------EEEEECSSSS
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHH----CCC-------CEEEEecCCC
Confidence 34567899999999999999998874 674 6888887543
No 89
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=79.27 E-value=1.8 Score=46.49 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=33.7
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRP 65 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~ 65 (848)
+..+|||+|||.||++||.-|.. .|.+ -+|.++|+.....-.|+
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~----~g~~-----~~V~lie~~~~~~y~~~ 51 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQ----NGFE-----GRVLVIGREPEIPYERP 51 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH----TTCC-----SCEEEEESSSSCCBCSG
T ss_pred CCCcEEEECChHHHHHHHHHHHc----cCcC-----CCEEEEecCCCCCcCcc
Confidence 45689999999999999998874 7764 36999998765443343
No 90
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}
Probab=78.83 E-value=3.2 Score=46.98 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR 290 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r 290 (848)
.-++-.+++..|.+|++.|++|+|.|..|...|+.|.+. | .+-+.+.|++|-|+...
T Consensus 223 ~~~~~~~~~~~g~~l~g~~VaVQG~GnVG~~aa~~L~e~----G------akvVavsD~~G~iyd~~ 279 (456)
T 3r3j_A 223 VYFAENVLKDLNDNLENKKCLVSGSGNVAQYLVEKLIEK----G------AIVLTMSDSNGYILEPN 279 (456)
T ss_dssp HHHHHHHHHTTTCCSTTCCEEEECCSHHHHHHHHHHHHH----T------CCBCCEECSSCEEECTT
T ss_pred HHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHC----C------CEEEEEECCCCcEECCC
Confidence 447778888889999999999999999999999988765 7 44556999999999643
No 91
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=78.80 E-value=1.7 Score=43.80 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=25.1
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.|||+|||.||++||.-+. +.|. ++.++|+.
T Consensus 6 DvvIIG~GpAGl~AA~~la----~~g~-------~v~liE~~ 36 (314)
T 4a5l_A 6 DVVIIGSGPAAHTAAIYLG----RSSL-------KPVMYEGF 36 (314)
T ss_dssp EEEEECCSHHHHHHHHHHH----HTTC-------CCEEECCS
T ss_pred cEEEECCCHHHHHHHHHHH----HCCC-------CEEEEecC
Confidence 5999999999999997665 3675 57888864
No 92
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=78.55 E-value=2.1 Score=45.81 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=32.7
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRP 65 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~ 65 (848)
-+|||+|||.||++||.-|.. .|.+ .+|.++|+.....-.|+
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~----~g~~-----~~V~lie~~~~~~y~~~ 43 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQ----AKYP-----GRIALINDEKHLPYQRP 43 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHH----TTCC-----SCEEEECCSSSSSBCSG
T ss_pred CCEEEEcChHHHHHHHHHHHh----hCcC-----CCEEEEeCCCCCCCCCc
Confidence 379999999999999998874 6764 27999999775444444
No 93
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=78.24 E-value=2.7 Score=44.92 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhhCCcCCCceEEecCcch-hhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchh
Q psy14377 688 SVAVAGLLASLRITKTRLSDNTILFQGAGE-GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRI 766 (848)
Q Consensus 688 aV~LAgllaAlr~t~~~l~d~riv~~GAG~-A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~ 766 (848)
-+|-.|++..++-.+.+++..++|++|+|. . |..+|.+|....+ .+.+|. . ++ +.
T Consensus 142 PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iV--G~plA~lL~~~gA-tVtv~h-----s-~T---------------~~ 197 (286)
T 4a5o_A 142 PCTPKGIMTLLASTGADLYGMDAVVVGASNIV--GRPMALELLLGGC-TVTVTH-----R-FT---------------RD 197 (286)
T ss_dssp CHHHHHHHHHHHHTTCCCTTCEEEEECTTSTT--HHHHHHHHHHTTC-EEEEEC-----T-TC---------------SC
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCchh--HHHHHHHHHHCCC-eEEEEe-----C-CC---------------cC
Confidence 357788899999999999999999999875 8 9999999998765 344443 1 11 35
Q ss_pred hccccCCCceEEeecC
Q psy14377 767 TKTRLSDNTILFQGSG 782 (848)
Q Consensus 767 ~~~~~~~~~~~~~~s~ 782 (848)
+++.++.|||.|...+
T Consensus 198 L~~~~~~ADIVI~Avg 213 (286)
T 4a5o_A 198 LADHVSRADLVVVAAG 213 (286)
T ss_dssp HHHHHHTCSEEEECCC
T ss_pred HHHHhccCCEEEECCC
Confidence 7788899999998765
No 94
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=78.16 E-value=2.1 Score=45.46 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=29.2
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++.++.+|+|+|||.||+++|..|.. .|+ ++.++|+..
T Consensus 19 ~~~~~~dV~IVGaG~aGl~~A~~La~----~G~-------~V~v~E~~~ 56 (407)
T 3rp8_A 19 YFQGHMKAIVIGAGIGGLSAAVALKQ----SGI-------DCDVYEAVK 56 (407)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHH----TTC-------EEEEEESSS
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHh----CCC-------CEEEEeCCC
Confidence 34567899999999999999998874 675 688888864
No 95
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=78.14 E-value=2.2 Score=45.32 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=30.4
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+++.+|+|+|||.||+++|..|. +.|+ ++.++|+..-
T Consensus 24 ~~~~dV~IVGaG~aGl~~A~~L~----~~G~-------~v~v~E~~~~ 60 (398)
T 2xdo_A 24 LSDKNVAIIGGGPVGLTMAKLLQ----QNGI-------DVSVYERDND 60 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHH----TTTC-------EEEEEECSSS
T ss_pred cCCCCEEEECCCHHHHHHHHHHH----HCCC-------CEEEEeCCCC
Confidence 45679999999999999999887 4675 6889998643
No 96
>3tum_A Shikimate dehydrogenase family protein; rossmann-fold NAD(P)(+)-binding site, shikimate dehydrogenas substrate binding domain, oxidoreductase; HET: NAD; 2.15A {Pseudomonas putida}
Probab=78.13 E-value=2.2 Score=44.78 Aligned_cols=93 Identities=23% Similarity=0.189 Sum_probs=60.2
Q ss_pred cCceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCch-
Q psy14377 675 RYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTA- 753 (848)
Q Consensus 675 ~~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~- 753 (848)
++.=+|=|- .|++.+++-.+.++++.|++++|||-| +-+++-.|.+.+++++.+.+ |+..-+
T Consensus 101 ~l~G~NTD~--------~Gf~~~L~~~g~~~~~~~~lilGaGGa--arai~~aL~~~g~~~i~i~n-------Rt~~ra~ 163 (269)
T 3tum_A 101 RLLGDNVDG--------AGFLGAAHKHGFEPAGKRALVIGCGGV--GSAIAYALAEAGIASITLCD-------PSTARMG 163 (269)
T ss_dssp CEEEECCHH--------HHHHHHHHHTTCCCTTCEEEEECCSHH--HHHHHHHHHHTTCSEEEEEC-------SCHHHHH
T ss_pred EEEEEEcCh--------HHHHHHHHHhCCCcccCeEEEEecHHH--HHHHHHHHHHhCCCeEEEeC-------CCHHHHH
Confidence 355566663 346678888888999999999999999 99999999999887766554 221111
Q ss_pred H-HHhhhc---cccchhhccccCCCceEEeecCCC
Q psy14377 754 S-VAIAGL---LASLRITKTRLSDNTILFQGSGEG 784 (848)
Q Consensus 754 ~-~~~~~~---~~~~r~~~~~~~~~~~~~~~s~~~ 784 (848)
. .+..+- ..........+.++|+.+-.+.-|
T Consensus 164 ~la~~~~~~~~~~~~~~~~~~~~~~dliiNaTp~G 198 (269)
T 3tum_A 164 AVCELLGNGFPGLTVSTQFSGLEDFDLVANASPVG 198 (269)
T ss_dssp HHHHHHHHHCTTCEEESCCSCSTTCSEEEECSSTT
T ss_pred HHHHHHhccCCcceehhhhhhhhcccccccCCccc
Confidence 1 111110 111222344567889988766544
No 97
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=78.07 E-value=2 Score=43.86 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=28.1
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
..+|||+|||.||+++|..+.. .|. ++.++|++.
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~----~g~-------~v~lie~~~ 38 (335)
T 2zbw_A 5 HTDVLIVGAGPTGLFAGFYVGM----RGL-------SFRFVDPLP 38 (335)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESSS
T ss_pred cCcEEEECCCHHHHHHHHHHHh----CCC-------CEEEEeCCC
Confidence 4689999999999999997763 564 689999864
No 98
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=78.00 E-value=1.6 Score=45.46 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=30.1
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+++..|||+|||.||+++|..|.+ .|. +|.++|+.-.
T Consensus 2 m~~~dVvIvG~G~aGl~~A~~La~----~G~-------~V~l~E~~~~ 38 (397)
T 3cgv_A 2 METYDVLVVGGGPGGSTAARYAAK----YGL-------KTLMIEKRPE 38 (397)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSSS
T ss_pred CccCCEEEECcCHHHHHHHHHHHH----CCC-------CEEEEeCCCC
Confidence 345789999999999999998874 675 6889898653
No 99
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=77.81 E-value=2.3 Score=45.45 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=29.7
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++.+|||+|||.||+++|..|.. .|++ |+.++|+..-
T Consensus 3 ~~~dVvIVGaG~aGl~~A~~L~~----~G~~------~v~v~E~~~~ 39 (410)
T 3c96_A 3 EPIDILIAGAGIGGLSCALALHQ----AGIG------KVTLLESSSE 39 (410)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH----TTCS------EEEEEESSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHh----CCCC------eEEEEECCCC
Confidence 35789999999999999998874 6752 5899998643
No 100
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=77.65 E-value=2.3 Score=45.09 Aligned_cols=35 Identities=11% Similarity=0.264 Sum_probs=27.6
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
..||||+|+|.||+..|..|.+. |- .-+|.++|++
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~----~~-----~~~Vtlie~~ 36 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLA----DP-----SIEVTLIEPN 36 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH----CT-----TSEEEEECSC
T ss_pred cCEEEEECCcHHHHHHHHHHHhc----Cc-----CCeEEEEeCC
Confidence 46899999999999999988754 42 1378888864
No 101
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=77.44 E-value=1.5 Score=45.01 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=32.2
Q ss_pred cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+|++.+|+|+|+|..|..+|+.|..+ | .++|.++|.+-
T Consensus 28 ~l~~~~VlVvG~Gg~G~~va~~La~~----G------v~~i~lvD~d~ 65 (249)
T 1jw9_B 28 ALKDSRVLIVGLGGLGCAASQYLASA----G------VGNLTLLDFDT 65 (249)
T ss_dssp HHHHCEEEEECCSHHHHHHHHHHHHH----T------CSEEEEECCCB
T ss_pred HHhCCeEEEEeeCHHHHHHHHHHHHc----C------CCeEEEEcCCC
Confidence 45668999999999999999988876 8 46899999863
No 102
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=77.27 E-value=2.2 Score=44.83 Aligned_cols=87 Identities=23% Similarity=0.298 Sum_probs=57.2
Q ss_pred HHHHHHHhhhC-CcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHH-Hhhhc----cccch
Q psy14377 692 AGLLASLRITK-TRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASV-AIAGL----LASLR 765 (848)
Q Consensus 692 AgllaAlr~t~-~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~-~~~~~----~~~~r 765 (848)
.|++.+++-.+ .+++..+++|+|||.+ |-++|..|...+++++.+.+... +.-... +..+. ..+.-
T Consensus 125 ~G~~~~l~~~~~~~l~~~~vlVlGaGg~--g~aia~~L~~~G~~~V~v~nR~~------~ka~~la~~~~~~~~~~~~~~ 196 (297)
T 2egg_A 125 LGYVQALEEEMNITLDGKRILVIGAGGG--ARGIYFSLLSTAAERIDMANRTV------EKAERLVREGDERRSAYFSLA 196 (297)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEECCSHH--HHHHHHHHHTTTCSEEEEECSSH------HHHHHHHHHSCSSSCCEECHH
T ss_pred HHHHHHHHHhCCCCCCCCEEEEECcHHH--HHHHHHHHHHCCCCEEEEEeCCH------HHHHHHHHHhhhccCceeeHH
Confidence 56777777666 6789999999999999 99999999998876666554110 000011 11110 11112
Q ss_pred hhccccCCCceEEeecCCCcc
Q psy14377 766 ITKTRLSDNTILFQGSGEGTA 786 (848)
Q Consensus 766 ~~~~~~~~~~~~~~~s~~~~~ 786 (848)
.+.+.+.++||.+....-|..
T Consensus 197 ~~~~~~~~aDivIn~t~~~~~ 217 (297)
T 2egg_A 197 EAETRLAEYDIIINTTSVGMH 217 (297)
T ss_dssp HHHHTGGGCSEEEECSCTTCS
T ss_pred HHHhhhccCCEEEECCCCCCC
Confidence 355677899999988877653
No 103
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=77.25 E-value=3 Score=46.08 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=28.5
Q ss_pred CCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 705 LSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 705 l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
+...|++|+|+|.. |..+|+.+...+. ++.++|
T Consensus 182 v~~~kV~ViG~G~i--G~~aa~~a~~lGa-~V~v~D 214 (381)
T 3p2y_A 182 VKPASALVLGVGVA--GLQALATAKRLGA-KTTGYD 214 (381)
T ss_dssp ECCCEEEEESCSHH--HHHHHHHHHHHTC-EEEEEC
T ss_pred cCCCEEEEECchHH--HHHHHHHHHHCCC-EEEEEe
Confidence 57899999999999 9999999999886 465555
No 104
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=77.02 E-value=1.9 Score=47.26 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=27.9
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
||||+|||.||++||.-+.+ +|-+ -+|+++|+..
T Consensus 2 KVvIIG~G~AGl~aA~~l~~----~g~~-----~~V~lie~~~ 35 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRR----LDKE-----SDIIIFEKDR 35 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHH----HCSS-----SCEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHh----CCCC-----CcEEEEeCCC
Confidence 79999999999999997763 6754 3799998754
No 105
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A
Probab=76.90 E-value=4 Score=43.45 Aligned_cols=57 Identities=26% Similarity=0.180 Sum_probs=41.5
Q ss_pred cCceeccCC---chHHHHHHHHHHHHHhhh---------------------CCcCCCceEEecCcchhhHHHHHHHHHHH
Q psy14377 675 RYCVFNDDI---QGTASVAVAGLLASLRIT---------------------KTRLSDNTILFQGAGEGTASVAVAGLLAS 730 (848)
Q Consensus 675 ~~~~FnDDi---QGTaaV~LAgllaAlr~t---------------------~~~l~d~riv~~GAG~A~~g~giA~ll~~ 730 (848)
.+++.|--- +.+|=-+++.+|+..|-. +..|.+.+|.|+|.|.- |..+|+.+..
T Consensus 99 gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG~G~i--G~~iA~~l~~ 176 (330)
T 2gcg_A 99 GIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRI--GQAIARRLKP 176 (330)
T ss_dssp TCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECCSHH--HHHHHHHHGG
T ss_pred CceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEECcCHH--HHHHHHHHHH
Confidence 366666432 233444788888877621 35688999999999999 9999999987
Q ss_pred hcc
Q psy14377 731 LRI 733 (848)
Q Consensus 731 ~~~ 733 (848)
.+.
T Consensus 177 ~G~ 179 (330)
T 2gcg_A 177 FGV 179 (330)
T ss_dssp GTC
T ss_pred CCC
Confidence 664
No 106
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=76.80 E-value=2.3 Score=45.16 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=28.4
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
.+|||+|||.||+++|..|.+ .|. +|.++++...
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~----~G~-------~V~vlE~~~~ 35 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTN----AGK-------KVLLLEGGER 35 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHH----TTC-------CEEEECSSSS
T ss_pred CCEEEECCcHHHHHHHHHHHH----cCC-------eEEEEecCCC
Confidence 479999999999999998884 674 7899998644
No 107
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=76.67 E-value=2.4 Score=44.04 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=28.8
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++.+|||+|||.||+++|..+.. .|. ++.++|+..
T Consensus 13 ~~~dvvIIG~G~aGl~aA~~l~~----~g~-------~v~lie~~~ 47 (360)
T 3ab1_A 13 DMRDLTIIGGGPTGIFAAFQCGM----NNI-------SCRIIESMP 47 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHh----CCC-------CEEEEecCC
Confidence 45789999999999999998763 564 689999864
No 108
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=76.63 E-value=1.9 Score=44.39 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=27.7
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
|.--|+|+|||.||+++|..|.+ .|+ ++.++|++
T Consensus 3 e~yDViIVGaGpaGl~~A~~La~----~G~-------~V~v~Er~ 36 (397)
T 3oz2_A 3 ETYDVLVVGGGPGGSTAARYAAK----YGL-------KTLMIEKR 36 (397)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHH----CCC-------cEEEEeCC
Confidence 34458999999999999998874 786 57888874
No 109
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=76.60 E-value=2 Score=47.60 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=29.6
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+.+.+|||+|||.||++||..|.+ .|. .+|.++....
T Consensus 6 ~~~~~VvIIGaG~aGL~AA~~L~~----~G~------~~V~VlEa~~ 42 (516)
T 1rsg_A 6 PAKKKVIIIGAGIAGLKAASTLHQ----NGI------QDCLVLEARD 42 (516)
T ss_dssp CEEEEEEEECCBHHHHHHHHHHHH----TTC------CSEEEECSSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHh----cCC------CCEEEEeCCC
Confidence 456789999999999999999884 671 3688888754
No 110
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=76.54 E-value=1.9 Score=47.22 Aligned_cols=39 Identities=15% Similarity=0.034 Sum_probs=27.6
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIV 61 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~ 61 (848)
..+|||+|||.||+++|.-|.. .+-. -+|.++|+...+.
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~----~~~g-----~~Vtvie~~~~~~ 41 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKR----LDPE-----AHVTMIDQASRIS 41 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHH----HCTT-----SEEEEECCC----
T ss_pred CCcEEEECCCHHHHHHHHHHHh----hCcC-----CCEEEEECCCccc
Confidence 4589999999999999998874 4211 3799999876543
No 111
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=76.47 E-value=2.8 Score=44.54 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=30.3
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
..+.+|+|+|||.||+++|..|.. .|+ ++.++|+..-
T Consensus 3 ~~~~~V~IVGaG~aGl~~A~~L~~----~G~-------~v~v~E~~~~ 39 (397)
T 2vou_A 3 PTTDRIAVVGGSISGLTAALMLRD----AGV-------DVDVYERSPQ 39 (397)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHH----TTC-------EEEEECSSSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHh----CCC-------CEEEEecCCC
Confidence 346789999999999999998884 675 6888887643
No 112
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=76.42 E-value=2.2 Score=46.32 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=27.3
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
||||+|||.||+.||+-|.. .|-+ -+|.++|.+-
T Consensus 4 ~VvIIGgG~aGl~aA~~L~~----~~~~-----~~VtlI~~~~ 37 (430)
T 3hyw_A 4 HVVVIGGGVGGIATAYNLRN----LMPD-----LKITLISDRP 37 (430)
T ss_dssp EEEEECSSHHHHHHHHHHHH----HCTT-----CEEEEECSSS
T ss_pred cEEEECCCHHHHHHHHHHhc----cCcC-----CeEEEEcCCC
Confidence 79999999999999998874 4422 3799998754
No 113
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=76.42 E-value=2.8 Score=45.53 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=30.1
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
...+|+|+|||.||+++|..|. +.|.. .+|.++|+..
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~----~~G~~-----~~V~v~E~~~ 41 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALL----AEKAF-----DQVTLFERRG 41 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHH----TTTCC-----SEEEEECSSS
T ss_pred CCCEEEEECccHHHHHHHHHHH----hcCCC-----CCeEEEecCC
Confidence 3468999999999999999887 46753 3799999863
No 114
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=76.02 E-value=2.2 Score=45.13 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=29.6
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++.+|||+|||.||+++|-.|. +.|+ ++.++|+.-.
T Consensus 4 ~~~dVvIIGgG~aGl~~A~~La----~~G~-------~V~v~E~~~~ 39 (421)
T 3nix_A 4 EKVDVLVIGAGPAGTVAASLVN----KSGF-------KVKIVEKQKF 39 (421)
T ss_dssp CEEEEEEECCSHHHHHHHHHHH----TTTC-------CEEEECSSCS
T ss_pred ccCcEEEECCCHHHHHHHHHHH----hCCC-------CEEEEeCCCC
Confidence 3578999999999999999887 4675 6889998743
No 115
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=75.98 E-value=2.6 Score=43.06 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=28.1
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+.+|||+|||.+|+++|..|.+ .|. +|.++|+.
T Consensus 4 ~~dvvIIG~G~~Gl~~A~~La~----~G~-------~V~vlE~~ 36 (369)
T 3dme_A 4 DIDCIVIGAGVVGLAIARALAA----GGH-------EVLVAEAA 36 (369)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSS
T ss_pred cCCEEEECCCHHHHHHHHHHHh----CCC-------eEEEEeCC
Confidence 5689999999999999998874 674 68898886
No 116
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=75.81 E-value=2 Score=43.42 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=27.7
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..+|||+|||.||+++|..|.. .|. ++.++|+.
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~----~g~-------~v~vie~~ 54 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLAR----AEI-------KPILYEGM 54 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TTC-------CCEEECCS
T ss_pred CCCEEEECcCHHHHHHHHHHHH----CCC-------CEEEEecC
Confidence 4689999999999999998874 674 57888874
No 117
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=75.32 E-value=2.4 Score=43.08 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=27.8
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+.+|||+|||.||+++|..+.+ .|. ++.++|+.
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~----~g~-------~v~lie~~ 48 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAAR----SGF-------SVAILDKA 48 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESS
T ss_pred CCcEEEECcCHHHHHHHHHHHh----CCC-------cEEEEeCC
Confidence 4689999999999999998874 674 68999974
No 118
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=75.32 E-value=1.5 Score=45.07 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=32.1
Q ss_pred cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+|++.||+|+|+|..|..+|+.|+.+ | .++|.++|.+
T Consensus 25 ~l~~~~VlvvG~GglG~~va~~La~~----G------vg~i~lvD~d 61 (251)
T 1zud_1 25 KLLDSQVLIIGLGGLGTPAALYLAGA----G------VGTLVLADDD 61 (251)
T ss_dssp HHHTCEEEEECCSTTHHHHHHHHHHT----T------CSEEEEECCC
T ss_pred HHhcCcEEEEccCHHHHHHHHHHHHc----C------CCeEEEEeCC
Confidence 56778999999999999999987765 8 5699999986
No 119
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=75.22 E-value=2.9 Score=44.26 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=28.1
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+|||+|||.||++||..|.+ .| .+|.++++...
T Consensus 2 dVvVIGaGiaGLsaA~~La~----~G-------~~V~vlE~~~~ 34 (425)
T 3ka7_A 2 KTVVIGAGLGGLLSAARLSK----AG-------HEVEVFERLPI 34 (425)
T ss_dssp EEEEECCBHHHHHHHHHHHH----TT-------CEEEEECSSSS
T ss_pred cEEEECCCHHHHHHHHHHHh----CC-------CceEEEeCCCC
Confidence 69999999999999998884 67 37999998654
No 120
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=74.98 E-value=2.9 Score=43.03 Aligned_cols=47 Identities=30% Similarity=0.271 Sum_probs=38.5
Q ss_pred HHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 691 VAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 691 LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
-.|++.+++-.+.++++.+++|+|||.+ |-++|..+...+ .++.+++
T Consensus 103 ~~G~~~~L~~~~~~l~~k~vlViGaGg~--g~a~a~~L~~~G-~~V~v~~ 149 (271)
T 1nyt_A 103 GVGLLSDLERLSFIRPGLRILLIGAGGA--SRGVLLPLLSLD-CAVTITN 149 (271)
T ss_dssp HHHHHHHHHHHTCCCTTCEEEEECCSHH--HHHHHHHHHHTT-CEEEEEC
T ss_pred HHHHHHHHHhcCcCcCCCEEEEECCcHH--HHHHHHHHHHcC-CEEEEEE
Confidence 5567777777788899999999999999 999999999988 4555443
No 121
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=74.83 E-value=2.8 Score=42.81 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=28.1
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..+|||+|||.||+++|..+.+ .|. ++.++|+.
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~----~g~-------~v~lie~~ 40 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGR----AQL-------STLILEKG 40 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESS
T ss_pred cCCEEEECCCHHHHHHHHHHHH----cCC-------cEEEEeCC
Confidence 4689999999999999998874 564 68999986
No 122
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*
Probab=74.77 E-value=9.5 Score=39.24 Aligned_cols=82 Identities=16% Similarity=0.099 Sum_probs=55.4
Q ss_pred eeeecCCCcchHHHHHHHccc-----CceeccCCchHHHHHHHHHHHHHhhh-CCcCCCceEEecC-cchhhHHHHHHHH
Q psy14377 655 IQFEDFANHSAFRFLDTYRNR-----YCVFNDDIQGTASVAVAGLLASLRIT-KTRLSDNTILFQG-AGEGTASVAVAGL 727 (848)
Q Consensus 655 IqfEDf~~~naf~lL~ryr~~-----~~~FnDDiQGTaaV~LAgllaAlr~t-~~~l~d~riv~~G-AG~A~~g~giA~l 727 (848)
++++-+.-..+.+++++-+.. -++...|..|.- ..-.|++.+++-. +.++++.+++|.| +|.+ |-+++..
T Consensus 62 ~~~~G~~~~~~~~~~~~~~~~~~gavnt~~~~~~~G~n-Td~~g~~~~l~~~~~~~l~gk~vlVtGaaGGi--G~aia~~ 138 (287)
T 1lu9_A 62 IFVGGGDMAAGERVFEAVKKRFFGPFRVSCMLDSNGSN-TTAAAGVALVVKAAGGSVKGKKAVVLAGTGPV--GMRSAAL 138 (287)
T ss_dssp EEEECSCHHHHHHHHHHHHHHCBTTBCCEEEECSTTHH-HHHHHHHHHHHHHTTSCCTTCEEEEETCSSHH--HHHHHHH
T ss_pred EEEccchHHHHHHHHHHHHHhcCCCeEEEEecCCCcCC-chHHHHHHHHHHhhccCCCCCEEEEECCCcHH--HHHHHHH
Confidence 334545555777788776642 122234455532 2446677777766 7778999999999 8999 9999999
Q ss_pred HHHhccccccccc
Q psy14377 728 LASLRITKTRLSD 740 (848)
Q Consensus 728 l~~~~~~~~~~~d 740 (848)
+.+.+.+ +.+.+
T Consensus 139 L~~~G~~-V~i~~ 150 (287)
T 1lu9_A 139 LAGEGAE-VVLCG 150 (287)
T ss_dssp HHHTTCE-EEEEE
T ss_pred HHHCcCE-EEEEE
Confidence 9998764 54443
No 123
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=74.69 E-value=2.9 Score=45.13 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=31.1
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIV 61 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~ 61 (848)
..+|||+|||.||+++|.-+.. .|.+ -+|.++|+...+.
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~----~g~~-----~~V~lie~~~~~~ 45 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQ----AGYQ-----GLITVVGDEAERP 45 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHH----HTCC-----SCEEEEESSCSCC
T ss_pred CCcEEEECChHHHHHHHHHHHc----cCCC-----CeEEEEECCCCCc
Confidence 4579999999999999998874 6753 2799999876543
No 124
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=74.40 E-value=3 Score=41.32 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=28.3
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
++.+|||+|||.||+.+|..+.. .|. ++.++|+.
T Consensus 2 ~~~dVvVVGgG~aGl~aA~~la~----~g~-------~v~lie~~ 35 (232)
T 2cul_A 2 AAYQVLIVGAGFSGAETAFWLAQ----KGV-------RVGLLTQS 35 (232)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESC
T ss_pred CCCCEEEECcCHHHHHHHHHHHH----CCC-------CEEEEecC
Confidence 45789999999999999998874 674 68888875
No 125
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=74.38 E-value=2.8 Score=44.56 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=35.1
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++|++.||+++|||..|-.+++.|.. .|+ .+|.++|.+=+
T Consensus 32 ~kL~~~~VlVvGaGGlGs~va~~La~----aGV------G~i~lvD~D~V 71 (292)
T 3h8v_A 32 EKIRTFAVAIVGVGGVGSVTAEMLTR----CGI------GKLLLFDYDKV 71 (292)
T ss_dssp CGGGGCEEEEECCSHHHHHHHHHHHH----HTC------SEEEEECCCBC
T ss_pred HHHhCCeEEEECcCHHHHHHHHHHHH----cCC------CEEEEECCCcc
Confidence 67999999999999999999998884 687 49999998654
No 126
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=74.35 E-value=2.2 Score=44.03 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=38.9
Q ss_pred HHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 691 VAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 691 LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
-.|++.+++-.+.+++..+++|+|||.+ |-++|..|...+ .++.+.+
T Consensus 103 ~~G~~~~L~~~~~~~~~~~vlvlGaGg~--g~a~a~~L~~~G-~~v~v~~ 149 (272)
T 1p77_A 103 GIGLVTDLQRLNWLRPNQHVLILGAGGA--TKGVLLPLLQAQ-QNIVLAN 149 (272)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEECCSHH--HHTTHHHHHHTT-CEEEEEE
T ss_pred HHHHHHHHHHhCCCcCCCEEEEECCcHH--HHHHHHHHHHCC-CEEEEEE
Confidence 4677778887778899999999999999 999999999987 5555544
No 127
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=74.21 E-value=3.2 Score=38.87 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=27.4
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.++||+|+|.+|+.+|..+.. .|. ++.++|+..
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~----~g~-------~v~lie~~~ 34 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLAR----AGL-------KVLVLDGGR 34 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHH----TTC-------CEEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHH----CCC-------cEEEEeCCC
Confidence 479999999999999998874 663 688888754
No 128
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=74.21 E-value=3.2 Score=45.75 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=28.8
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+|+|+|||.||+++|+.|... ...|.+. .+|.++|+..
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~-~~~G~~~----~~V~v~E~~~ 41 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSA-QEKGAEI----PELVCFEKQA 41 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-HHTTCCC----CEEEEECSSS
T ss_pred CcEEEECccHHHHHHHHHHHhh-hhcCCCC----CcEEEEEcCC
Confidence 3799999999999999988731 1167531 1499999863
No 129
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=73.68 E-value=2 Score=46.50 Aligned_cols=38 Identities=16% Similarity=0.388 Sum_probs=33.0
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
++|++.||+|+|+|..|..+|..|+.+ | ..+|.++|.+
T Consensus 114 ~~L~~~~VlvvG~GglGs~va~~La~a----G------vg~i~lvD~D 151 (353)
T 3h5n_A 114 DKLKNAKVVILGCGGIGNHVSVILATS----G------IGEIILIDND 151 (353)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHHH----T------CSEEEEEECC
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHhC----C------CCeEEEECCC
Confidence 356778999999999999999988876 8 5799999975
No 130
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=73.66 E-value=2.1 Score=43.29 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=27.1
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
...+|||+|||.||+++|..+. +.|. ++.++|+.
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~----~~g~-------~v~lie~~ 37 (320)
T 1trb_A 4 KHSKLLILGSGPAGYTAAVYAA----RANL-------QPVLITGM 37 (320)
T ss_dssp EEEEEEEECCSHHHHHHHHHHH----TTTC-------CCEEECCS
T ss_pred CcCCEEEECcCHHHHHHHHHHH----HCCC-------cEEEEccC
Confidence 3468999999999999999887 3564 57888853
No 131
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=73.63 E-value=2.5 Score=46.08 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=27.9
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+.+|||+|||.||+++|..+.+ .|. ++.++|+.
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~----~G~-------~V~liE~~ 35 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQ----LGL-------STAIVEPK 35 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSS
T ss_pred cCCEEEECCCHHHHHHHHHHHh----CCC-------eEEEEeCC
Confidence 5689999999999999987774 674 68999975
No 132
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=73.41 E-value=4.1 Score=43.46 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhhCCcCCCceEEecCcch-hhHHHHHHHHHHHhc-ccccccccCceecCCCCCCchHHHhhhccccchh
Q psy14377 689 VAVAGLLASLRITKTRLSDNTILFQGAGE-GTASVAVAGLLASLR-ITKTRLSDNTILFQGAGEGTASVAIAGLLASLRI 766 (848)
Q Consensus 689 V~LAgllaAlr~t~~~l~d~riv~~GAG~-A~~g~giA~ll~~~~-~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~ 766 (848)
+|-.|++-.++-.+.+++..++|++|+|. - |--+|.+|...+ -..+.+|+ +. .+.
T Consensus 140 cTp~gi~~ll~~~~i~l~gk~vvVvG~s~iV--G~p~A~lL~~~g~~atVtv~h-------~~--------------t~~ 196 (281)
T 2c2x_A 140 CTPRGIVHLLRRYDISIAGAHVVVIGRGVTV--GRPLGLLLTRRSENATVTLCH-------TG--------------TRD 196 (281)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEEECCCTTT--HHHHHHHHTSTTTCCEEEEEC-------TT--------------CSC
T ss_pred ChHHHHHHHHHHcCCCCCCCEEEEECCCcHH--HHHHHHHHhcCCCCCEEEEEE-------Cc--------------hhH
Confidence 45667888888889999999999999995 6 888888887652 23344442 11 156
Q ss_pred hccccCCCceEEeecCC
Q psy14377 767 TKTRLSDNTILFQGSGE 783 (848)
Q Consensus 767 ~~~~~~~~~~~~~~s~~ 783 (848)
+++.+.+|||.|...++
T Consensus 197 L~~~~~~ADIVI~Avg~ 213 (281)
T 2c2x_A 197 LPALTRQADIVVAAVGV 213 (281)
T ss_dssp HHHHHTTCSEEEECSCC
T ss_pred HHHHHhhCCEEEECCCC
Confidence 77888999999987663
No 133
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=73.39 E-value=3.5 Score=44.13 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhhhCCcCCCceEEecCcch-hhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchh
Q psy14377 688 SVAVAGLLASLRITKTRLSDNTILFQGAGE-GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRI 766 (848)
Q Consensus 688 aV~LAgllaAlr~t~~~l~d~riv~~GAG~-A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~ 766 (848)
-+|-.|++-.++-.+.+++..++|++|+|. - |.-+|.++..... .+.+|+ . + .+.
T Consensus 140 PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iV--G~p~A~lL~~~gA-tVtv~h-----s-~---------------t~~ 195 (288)
T 1b0a_A 140 PCTPRGIVTLLERYNIDTFGLNAVVIGASNIV--GRPMSMELLLAGC-TTTVTH-----R-F---------------TKN 195 (288)
T ss_dssp CHHHHHHHHHHHHTTCCCTTCEEEEECCCTTT--HHHHHHHHHTTTC-EEEEEC-----S-S---------------CSC
T ss_pred CCcHHHHHHHHHHcCCCCCCCEEEEECCChHH--HHHHHHHHHHCCC-eEEEEe-----C-C---------------chh
Confidence 356677999999999999999999999995 7 9999999988763 344443 0 0 145
Q ss_pred hccccCCCceEEeecC
Q psy14377 767 TKTRLSDNTILFQGSG 782 (848)
Q Consensus 767 ~~~~~~~~~~~~~~s~ 782 (848)
+++.+.+|||.|+..+
T Consensus 196 L~~~~~~ADIVI~Avg 211 (288)
T 1b0a_A 196 LRHHVENADLLIVAVG 211 (288)
T ss_dssp HHHHHHHCSEEEECSC
T ss_pred HHHHhccCCEEEECCC
Confidence 7788889999998665
No 134
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=73.36 E-value=3.1 Score=41.89 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=25.5
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.+|||+|||.||+++|..+. +.|. ++.+++.+
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~----~~g~-------~v~li~~~ 33 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSA----RKGI-------RTGLMGER 33 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHH----TTTC-------CEEEECSS
T ss_pred CCEEEECcCHHHHHHHHHHH----HCCC-------cEEEEeCC
Confidence 57999999999999999877 3564 56777653
No 135
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=73.35 E-value=3 Score=44.24 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=28.0
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+.+|||+|||.||+++|.-+. +.|.+ -+|.++|+.
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~----~~g~~-----~~V~lie~~ 38 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWR----KLDGE-----TPLLMITAD 38 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHH----TTCSS-----SCEEEECSS
T ss_pred CCcEEEECChHHHHHHHHHHH----hhCCC-----CCEEEEECC
Confidence 467999999999999999877 47754 268888764
No 136
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=73.04 E-value=3.1 Score=45.89 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=27.9
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+.+.+|||+|||.||+++|.-+.+ .|. ++.++|++.
T Consensus 22 ~m~~~dVvVIGgG~aGl~aA~~la~----~G~-------~V~liEk~~ 58 (491)
T 3urh_A 22 SMMAYDLIVIGSGPGGYVCAIKAAQ----LGM-------KVAVVEKRS 58 (491)
T ss_dssp ----CCEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESSS
T ss_pred hcccCCEEEECCCHHHHHHHHHHHH----CCC-------eEEEEecCC
Confidence 3445789999999999999998874 674 689999753
No 137
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=73.03 E-value=3.3 Score=43.07 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=28.4
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+.+|||+|||.+|+++|..|.+ .|. +|.++|+..
T Consensus 17 ~~dvvIIGgG~~Gl~~A~~La~----~G~-------~V~llE~~~ 50 (382)
T 1ryi_A 17 HYEAVVIGGGIIGSAIAYYLAK----ENK-------NTALFESGT 50 (382)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHh----CCC-------cEEEEeCCC
Confidence 4689999999999999998874 674 689999753
No 138
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A
Probab=73.01 E-value=6.5 Score=44.28 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR 290 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r 290 (848)
.-++-.+++-.|.+|++.|++|+|.|..|...|++|.+. | .+=+-+.|++|-++...
T Consensus 219 ~~~~~~~~~~~g~~l~g~~vaVqGfGnVG~~~a~~L~e~----G------akvVavsD~~G~i~dp~ 275 (440)
T 3aog_A 219 FITAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFHDH----G------ARVVAVQDHTGTVYNEA 275 (440)
T ss_dssp HHHHHHHHHHHTCCSTTCEEEEECCSHHHHHHHHHHHHT----T------CEEEEEECSSCEEECTT
T ss_pred HHHHHHHHHhcCCCccCCEEEEeccCHHHHHHHHHHHHC----C------CEEEEEEcCCcEEECCC
Confidence 346777888899999999999999999999999987764 6 23344999999988754
No 139
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=73.01 E-value=2.1 Score=44.01 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=34.3
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+++++.||+++|+|..|-.+++.|.. .|+ .+|.++|..=+
T Consensus 24 ~~l~~~~VlvvG~GglG~~va~~La~----~Gv------g~i~lvD~d~v 63 (251)
T 1zud_1 24 QKLLDSQVLIIGLGGLGTPAALYLAG----AGV------GTLVLADDDDV 63 (251)
T ss_dssp HHHHTCEEEEECCSTTHHHHHHHHHH----TTC------SEEEEECCCBC
T ss_pred HHHhcCcEEEEccCHHHHHHHHHHHH----cCC------CeEEEEeCCCc
Confidence 46788999999999999999998884 787 48999998644
No 140
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=73.00 E-value=3.5 Score=41.95 Aligned_cols=81 Identities=21% Similarity=0.231 Sum_probs=54.1
Q ss_pred HHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchH-HHhhhccccchhhccc
Q psy14377 692 AGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTAS-VAIAGLLASLRITKTR 770 (848)
Q Consensus 692 AgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~-~~~~~~~~~~r~~~~~ 770 (848)
.|++.+++-.+.++++ +++|+|+|.+ |-.+|..+...+. ++.+++.- ++.... .+..|.. ...+++.
T Consensus 102 ~g~~~~l~~~~~~l~~-~v~iiG~G~~--g~~~a~~l~~~g~-~v~v~~r~------~~~~~~l~~~~~~~--~~~~~~~ 169 (263)
T 2d5c_A 102 PGFLEALKAGGIPLKG-PALVLGAGGA--GRAVAFALREAGL-EVWVWNRT------PQRALALAEEFGLR--AVPLEKA 169 (263)
T ss_dssp HHHHHHHHHTTCCCCS-CEEEECCSHH--HHHHHHHHHHTTC-CEEEECSS------HHHHHHHHHHHTCE--ECCGGGG
T ss_pred HHHHHHHHHhCCCCCC-eEEEECCcHH--HHHHHHHHHHCCC-EEEEEECC------HHHHHHHHHHhccc--hhhHhhc
Confidence 4778888877888999 9999999999 9999999988775 54444411 111111 1111221 1234555
Q ss_pred cCCCceEEeecCCCc
Q psy14377 771 LSDNTILFQGSGEGT 785 (848)
Q Consensus 771 ~~~~~~~~~~s~~~~ 785 (848)
.++||.+-....+.
T Consensus 170 -~~~Divi~~tp~~~ 183 (263)
T 2d5c_A 170 -REARLLVNATRVGL 183 (263)
T ss_dssp -GGCSEEEECSSTTT
T ss_pred -cCCCEEEEccCCCC
Confidence 78999998877764
No 141
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=72.98 E-value=2.8 Score=44.69 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=28.5
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
+|||+|||.||+++|.-|.+.. ..| .+|.++|+..-.
T Consensus 3 ~VvIIGgG~aGl~aA~~L~~~~-~~g-------~~V~vie~~~~~ 39 (409)
T 3h8l_A 3 KVLVLGGRFGALTAAYTLKRLV-GSK-------ADVKVINKSRFS 39 (409)
T ss_dssp EEEEECSSHHHHHHHHHHHHHH-GGG-------SEEEEEESSSEE
T ss_pred eEEEECCCHHHHHHHHHHHhhC-CCC-------CeEEEEeCCCCc
Confidence 7999999999999999877310 134 479999987654
No 142
>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E
Probab=72.95 E-value=5.7 Score=44.92 Aligned_cols=62 Identities=18% Similarity=0.116 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q psy14377 218 ESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR 290 (848)
Q Consensus 218 TA~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r 290 (848)
|++=+ +-++-.+++..+.+|++.|++|+|.|..|...|+.|.+. | .+=|.+-|++|-|+...
T Consensus 214 Tg~Gv-~~~~~~~~~~~~~~l~Gk~vaVQG~GnVG~~aa~~L~e~----G------akvVavsD~~G~i~d~~ 275 (450)
T 4fcc_A 214 TGYGL-VYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEF----G------ARVITASDSSGTVVDES 275 (450)
T ss_dssp HHHHH-HHHHHHHHHHTTCCSTTCEEEEECCSHHHHHHHHHHHHT----T------CEEEEEEETTEEEECTT
T ss_pred eeeeH-HHHHHHHHHHcCCCcCCCEEEEeCCChHHHHHHHHHHhc----C------CeEEEEecCCceEEeCC
Confidence 44444 557788889999999999999999999999999988764 8 46677889999998643
No 143
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=72.91 E-value=3.7 Score=44.20 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=29.0
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++.+|+|+|||.+|+++|..|.+ .| .+|.++|+..
T Consensus 2 ~~~~v~iiG~G~~Gl~~A~~l~~----~g-------~~v~v~E~~~ 36 (384)
T 2bi7_A 2 KSKKILIVGAGFSGAVIGRQLAE----KG-------HQVHIIDQRD 36 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT----TT-------CEEEEEESSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHH----CC-------CcEEEEEecC
Confidence 45799999999999999998873 46 4789998753
No 144
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=72.83 E-value=2.6 Score=42.23 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=25.7
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEE-EcC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWM-VDS 56 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m-~Ds 56 (848)
..+|||+|||.||+++|.-+.. .|. ++.+ +|+
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~----~g~-------~v~li~e~ 36 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATR----GGL-------KNVVMFEK 36 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH----HTC-------SCEEEECS
T ss_pred CceEEEECCCHHHHHHHHHHHH----CCC-------CeEEEEeC
Confidence 3589999999999999998874 565 3555 887
No 145
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=72.80 E-value=3.3 Score=41.76 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=27.2
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.+|||+|||.||+++|..+.. .|. +++.++|+.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~----~g~------~~v~lie~~ 34 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATR----GGV------KNAVLFEKG 34 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHH----TTC------SSEEEECSS
T ss_pred ceEEEECccHHHHHHHHHHHH----CCC------CcEEEEcCC
Confidence 479999999999999998874 564 268999985
No 146
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=72.71 E-value=3.5 Score=44.99 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=28.0
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+.+|||+|||.||+++|.-+.. .|. +|.++|+.
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~----~g~-------~V~lie~~ 36 (467)
T 1zk7_A 4 PVQVAVIGSGGAAMAAALKAVE----QGA-------QVTLIERG 36 (467)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH----TTC-------EEEEEESS
T ss_pred cCCEEEECCCHHHHHHHHHHHH----CCC-------EEEEEeCC
Confidence 5689999999999999987773 563 79999976
No 147
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=72.59 E-value=3.1 Score=43.89 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=28.9
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+.+|||+|||.||+++|..|.. .|+ ++.++|+..-
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~----~G~-------~V~viE~~~~ 40 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGR----QGH-------RVVVVEQARR 40 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSCC
T ss_pred cCCEEEECcCHHHHHHHHHHHh----CCC-------cEEEEeCCCC
Confidence 4689999999999999998874 675 5888887643
No 148
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=72.45 E-value=3.2 Score=42.13 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=26.4
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
|--|||+|||.||++||.-+. +.|. ++.++|+.
T Consensus 6 ~yDvvIIG~GpAGl~aA~~l~----~~g~-------~V~liE~~ 38 (312)
T 4gcm_A 6 DFDIAIIGAGPAGMTAAVYAS----RANL-------KTVMIERG 38 (312)
T ss_dssp SEEEEEECCSHHHHHHHHHHH----HTTC-------CEEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHH----HCCC-------CEEEEecC
Confidence 346899999999999998766 3674 68888863
No 149
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=72.37 E-value=3 Score=45.68 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=27.6
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++.+|||+|||+||++||..+.. .|. +|.++|+..
T Consensus 26 ~~~dViIIGgG~AGl~aA~~La~----~G~-------~V~llEk~~ 60 (417)
T 3v76_A 26 EKQDVVIIGAGAAGMMCAIEAGK----RGR-------RVLVIDHAR 60 (417)
T ss_dssp --CCEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHH----CCC-------cEEEEeCCC
Confidence 45689999999999999998774 674 688888754
No 150
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=72.35 E-value=3.4 Score=42.12 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=26.3
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
|+..-+||+|||.||++||--+. +.|. ++.++|+.
T Consensus 4 M~~yDVvIIGaGpAGlsAA~~la----r~g~-------~v~lie~~ 38 (304)
T 4fk1_A 4 MKYIDCAVIGAGPAGLNASLVLG----RARK-------QIALFDNN 38 (304)
T ss_dssp --CEEEEEECCSHHHHHHHHHHH----HTTC-------CEEEEECS
T ss_pred CCCcCEEEECCCHHHHHHHHHHH----HCCC-------CEEEEeCC
Confidence 55677999999999999996544 3674 68899864
No 151
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=72.30 E-value=3.3 Score=46.74 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=30.8
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
....+|||+|||.||+++|.-|.. .+-. -+|.++|+...+
T Consensus 34 ~~~~~VvIIGgG~AGl~aA~~L~~----~~~g-----~~V~vie~~~~~ 73 (588)
T 3ics_A 34 WGSRKIVVVGGVAGGASVAARLRR----LSEE-----DEIIMVERGEYI 73 (588)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHH----HCSS-----SEEEEECSSSCS
T ss_pred ccCCCEEEECCcHHHHHHHHHHHh----hCcC-----CCEEEEECCCCc
Confidence 445689999999999999998874 4211 379999987654
No 152
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=72.23 E-value=3.7 Score=43.20 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 219 SCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 219 A~V~~lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+.=+|..|++.+++-.+ +.+++|+|||.+|.+++..|... | .+|+++++
T Consensus 101 G~NTD~~Gf~~~L~~~~----~k~vlvlGaGGaaraia~~L~~~----G-------~~v~V~nR 149 (269)
T 3phh_A 101 GYNTDALGFYLSLKQKN----YQNALILGAGGSAKALACELKKQ----G-------LQVSVLNR 149 (269)
T ss_dssp EECCHHHHHHHHCC-------CCEEEEECCSHHHHHHHHHHHHT----T-------CEEEEECS
T ss_pred EecChHHHHHHHHHHcC----CCEEEEECCCHHHHHHHHHHHHC----C-------CEEEEEeC
Confidence 44556778888886543 78999999999999999877754 6 36887765
No 153
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=72.15 E-value=3.4 Score=45.61 Aligned_cols=36 Identities=14% Similarity=0.328 Sum_probs=29.6
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
+.+|||+|||.||++||..|.+ .|. +|.++++..-+
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~----~G~-------~V~vlE~~~~~ 39 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHD----SGL-------NVVVLEARDRV 39 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHH----TTC-------CEEEECSSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHH----CCC-------CEEEEeCCCCC
Confidence 4579999999999999999884 563 78999886544
No 154
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=72.10 E-value=3.3 Score=42.12 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=27.0
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.+|+|+|||.+|+++|..|.+ .|+ +|.++|+.
T Consensus 3 ~dV~IIGaG~~Gl~~A~~L~~----~G~-------~V~vlE~~ 34 (336)
T 1yvv_A 3 VPIAIIGTGIAGLSAAQALTA----AGH-------QVHLFDKS 34 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSS
T ss_pred ceEEEECCcHHHHHHHHHHHH----CCC-------cEEEEECC
Confidence 479999999999999998874 675 58888874
No 155
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=72.09 E-value=2.7 Score=45.84 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=35.0
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
.++++.||+++|||..|-.+|+.|.. .|+ .+|.++|..=+
T Consensus 30 ~kL~~~~VlIvGaGGlGs~va~~La~----aGV------g~ItlvD~D~V 69 (340)
T 3rui_A 30 DIIKNTKVLLLGAGTLGCYVSRALIA----WGV------RKITFVDNGTV 69 (340)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHH----TTC------CEEEEECCCBC
T ss_pred HHHhCCEEEEECCCHHHHHHHHHHHH----cCC------CEEEEecCCEe
Confidence 47889999999999999999999884 787 49999998654
No 156
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}
Probab=72.06 E-value=6.1 Score=44.20 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEE-EEcCCCcccCCC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIW-MVDSKGLIVKDR 290 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~-~vD~kGLi~~~r 290 (848)
.-++-.+++-.|.+|++.|++|+|.|..|...|+++.+. | -+++ +.|++|-++...
T Consensus 202 ~~~~~~~~~~~g~~l~gk~vaVqG~GnVG~~~a~~L~~~----G-------akVVavsD~~G~i~dp~ 258 (419)
T 3aoe_E 202 LLVLEALAKRRGLDLRGARVVVQGLGQVGAAVALHAERL----G-------MRVVAVATSMGGMYAPE 258 (419)
T ss_dssp HHHHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHT----T-------CEEEEEEETTEEEECTT
T ss_pred HHHHHHHHHhcCCCccCCEEEEECcCHHHHHHHHHHHHC----C-------CEEEEEEcCCCeEECCC
Confidence 446777888899999999999999999999999987653 6 3455 999999998643
No 157
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=71.98 E-value=3.4 Score=45.11 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=28.1
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+.+|||+|||.||+++|.-+.. .|. +|.++|+..
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~----~g~-------~V~lie~~~ 35 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQ----LGM-------KTACVEKRG 35 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESSS
T ss_pred CCCEEEECCCHHHHHHHHHHHH----CCC-------eEEEEeCCC
Confidence 4689999999999999987774 674 689999863
No 158
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=71.72 E-value=3.5 Score=45.30 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=28.0
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+.+|||+|||.||+++|.-+.. .|. +|.++|+.
T Consensus 4 ~~dVvIIGgG~aGl~aA~~l~~----~g~-------~V~liE~~ 36 (463)
T 2r9z_A 4 HFDLIAIGGGSGGLAVAEKAAA----FGK-------RVALIESK 36 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESS
T ss_pred cCcEEEECCCHHHHHHHHHHHh----CCC-------cEEEEcCC
Confidence 5789999999999999998873 664 78999975
No 159
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=71.64 E-value=4 Score=43.54 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=28.0
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+|||+|||.+|+++|..|.+ .| .+|.++|+...
T Consensus 2 dVvVIGaGiaGLsaA~~La~----~G-------~~V~vlE~~~~ 34 (421)
T 3nrn_A 2 RAVVVGAGLGGLLAGAFLAR----NG-------HEIIVLEKSAM 34 (421)
T ss_dssp EEEEESCSHHHHHHHHHHHH----TT-------CEEEEECSSSS
T ss_pred cEEEECCCHHHHHHHHHHHH----CC-------CeEEEEeCCCC
Confidence 79999999999999998874 67 37999998654
No 160
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=71.63 E-value=3.7 Score=43.20 Aligned_cols=36 Identities=14% Similarity=0.317 Sum_probs=29.7
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
+..|||+|||.+|+++|..|.+ .|. +|.++|+....
T Consensus 4 ~~DVvIIGaG~~Gl~~A~~La~----~G~-------~V~vlE~~~~~ 39 (397)
T 2oln_A 4 SYDVVVVGGGPVGLATAWQVAE----RGH-------RVLVLERHTFF 39 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESSCTT
T ss_pred cCCEEEECCCHHHHHHHHHHHH----CCC-------eEEEEeCCCCC
Confidence 4689999999999999998874 674 68999986543
No 161
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=71.58 E-value=2 Score=43.94 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=33.7
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+++++.||+++|+|..|..+++.|.. .|+ .+|.++|..-+
T Consensus 27 ~~l~~~~VlVvG~Gg~G~~va~~La~----~Gv------~~i~lvD~d~v 66 (249)
T 1jw9_B 27 EALKDSRVLIVGLGGLGCAASQYLAS----AGV------GNLTLLDFDTV 66 (249)
T ss_dssp HHHHHCEEEEECCSHHHHHHHHHHHH----HTC------SEEEEECCCBC
T ss_pred HHHhCCeEEEEeeCHHHHHHHHHHHH----cCC------CeEEEEcCCCc
Confidence 35778899999999999999998884 787 48999998653
No 162
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=71.55 E-value=3.1 Score=43.06 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=26.1
Q ss_pred eEEEeccchhHHHHHHHHHHHHHh---cCCCccccCCeEEEEcCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQK---EGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~---~G~~~e~~~~ni~m~Dsk 57 (848)
+|+|+|||.+|++||..|. + .|+ +|.++|+.
T Consensus 3 dV~IIGaG~aGl~~A~~L~----~~~~~G~-------~V~v~Ek~ 36 (342)
T 3qj4_A 3 QVLIVGAGMTGSLCAALLR----RQTSGPL-------YLAVWDKA 36 (342)
T ss_dssp EEEEECCSHHHHHHHHHHH----SCC-CCE-------EEEEECSS
T ss_pred cEEEECCcHHHHHHHHHHH----hhccCCc-------eEEEEECC
Confidence 7999999999999999887 4 453 78999875
No 163
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=71.41 E-value=3.2 Score=44.51 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=29.5
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
.+.+|||+|||.||++||..|.+ .|. +|.++++..-
T Consensus 4 ~~~~v~iiG~G~~Gl~aA~~l~~----~g~-------~v~v~E~~~~ 39 (453)
T 2yg5_A 4 LQRDVAIVGAGPSGLAAATALRK----AGL-------SVAVIEARDR 39 (453)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHH----CCC-------cEEEEECCCC
Confidence 35689999999999999998884 564 6899988644
No 164
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=71.40 E-value=2.5 Score=45.61 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=33.2
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
++|+..+|+|+|+|..|..||+.|+.+ | .++|.++|.+
T Consensus 32 ~~L~~~~VlivG~GGlG~~ia~~La~~----G------vg~itlvD~d 69 (346)
T 1y8q_A 32 KRLRASRVLLVGLKGLGAEIAKNLILA----G------VKGLTMLDHE 69 (346)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHHH----T------CSEEEEECCC
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc----C------CCEEEEEECC
Confidence 356788999999999999999998877 9 5799999975
No 165
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=71.35 E-value=3.7 Score=42.82 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=28.4
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+.+|||+|||.+|+++|..|.+ .|. +|.++|+..
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~----~G~-------~V~lle~~~ 38 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAK----RGE-------EVTVIEKRF 38 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHH----CCC-------eEEEEeCCC
Confidence 5689999999999999998874 574 689998853
No 166
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=71.14 E-value=3.1 Score=45.62 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=29.4
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+++.+|||+|||.||+++|.-+.. .|. +|.++|+.-
T Consensus 4 m~~~dvvIIG~G~aG~~aA~~l~~----~g~-------~V~lie~~~ 39 (464)
T 2eq6_A 4 MKTYDLIVIGTGPGGYHAAIRAAQ----LGL-------KVLAVEAGE 39 (464)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESSC
T ss_pred cccCCEEEECcCHHHHHHHHHHHH----CCC-------eEEEEeCCC
Confidence 345789999999999999998874 663 789999764
No 167
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=71.13 E-value=4.1 Score=46.26 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=29.9
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
..+.+|||+|||.||+++|.-|.+ .|+ +|.++|+..
T Consensus 7 ~~~~dVvIIGaG~aGl~aA~~L~~----~g~-------~v~iiE~~~ 42 (545)
T 3uox_A 7 SPALDAVVIGAGVTGIYQAFLINQ----AGM-------KVLGIEAGE 42 (545)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSS
T ss_pred CCCCCEEEECccHHHHHHHHHHHh----CCC-------CEEEEeCCC
Confidence 456899999999999999998874 664 689999864
No 168
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=71.05 E-value=3.4 Score=45.57 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=28.8
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.+.+|||+|||.||+++|.-+.+ .|. +|.++|+.
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~----~g~-------~V~liE~~ 43 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAAS----YGA-------KTLLVEAK 43 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH----TSC-------CEEEEESS
T ss_pred ccCCEEEEcCCHHHHHHHHHHHH----CCC-------cEEEEeCC
Confidence 46789999999999999998874 574 68999975
No 169
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=71.04 E-value=3.4 Score=46.07 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=28.7
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
||||+|||.||++||.-|.. .|-. -+|.++|+....
T Consensus 3 ~VvIIGgG~AGl~aA~~L~~----~~~~-----~~V~lie~~~~~ 38 (565)
T 3ntd_A 3 KILIIGGVAGGASAAARARR----LSET-----AEIIMFERGEYV 38 (565)
T ss_dssp EEEEECSSHHHHHHHHHHHH----HCSS-----SEEEEECSSSCS
T ss_pred cEEEECCCHHHHHHHHHHHh----hCcC-----CCEEEEECCCCc
Confidence 79999999999999998874 4322 389999987554
No 170
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=70.98 E-value=4.5 Score=44.01 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=30.7
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
..+|||+|||.||+++|.-+.. .|.+ .+|.++|+...+
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~----~g~~-----~~V~lie~~~~~ 41 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRA----SGWE-----GNIRLVGDATVI 41 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHH----TTCC-----SEEEEECSCCSC
T ss_pred CCcEEEEcCHHHHHHHHHHHHc----cCcC-----CCEEEEECCCCC
Confidence 3589999999999999998874 7754 279999986543
No 171
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=70.96 E-value=3.1 Score=42.40 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=27.7
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
...+|||+|||.||+++|..|.. .|. ++.++|+
T Consensus 7 ~~~~vvIIG~G~aGl~~A~~l~~----~g~-------~v~lie~ 39 (333)
T 1vdc_A 7 HNTRLCIVGSGPAAHTAAIYAAR----AEL-------KPLLFEG 39 (333)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH----TTC-------CCEEECC
T ss_pred CCCCEEEECcCHHHHHHHHHHHH----CCC-------eEEEEec
Confidence 45689999999999999998874 574 6788887
No 172
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=70.93 E-value=4.1 Score=44.41 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=28.0
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+|+|+|||.||+++|..|.+ .|. ++.++++..
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~----~g~-------~v~v~E~~~ 72 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTV----AGF-------KTLLLEARD 72 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHH----TTC-------CEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHH----CCC-------CEEEEeCCC
Confidence 699999999999999998884 574 688888763
No 173
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=70.60 E-value=4.2 Score=46.75 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=31.7
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
.+++.+|||+|||.||+++|-.|.. .|+ +|.++|+...
T Consensus 20 ~M~~~DVvIVGgG~AGl~aA~~Lar----~G~-------~V~LiEr~~~ 57 (591)
T 3i3l_A 20 HMTRSKVAIIGGGPAGSVAGLTLHK----LGH-------DVTIYERSAF 57 (591)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHH----TTC-------EEEEECSSCS
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHc----CCC-------CEEEEcCCCC
Confidence 3667899999999999999998874 674 7899998744
No 174
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=70.60 E-value=3.5 Score=44.95 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=28.9
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
.+|||+|||.||+++|.-|.. .+-. -+|.++|+..-+
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~----~~~g-----~~V~vie~~~~~ 39 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRK----KYPQ-----AEISLIDKQATV 39 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHH----HCSS-----SEEEEECSSSCC
T ss_pred CCEEEECCCHHHHHHHHHHHh----hCcC-----CcEEEEECCCCC
Confidence 489999999999999998874 4211 389999987643
No 175
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=70.60 E-value=2.9 Score=45.35 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=31.8
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++...|++|+|+|.+|.++++++. .+|. +|+++|+..
T Consensus 169 ~l~g~~V~ViGaG~iG~~aa~~a~----~~Ga-------~V~~~d~~~ 205 (384)
T 1l7d_A 169 TVPPARVLVFGVGVAGLQAIATAK----RLGA-------VVMATDVRA 205 (384)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHH----HTTC-------EEEEECSCS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH----HCCC-------EEEEEeCCH
Confidence 678899999999999999999887 4784 599999754
No 176
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=70.53 E-value=4.2 Score=43.18 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=28.9
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++.+|+|+|||.||++||..|.+ .|. .+|.++++..
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~----~g~------~~v~v~E~~~ 40 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQ----AGF------HDYTILERTD 40 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHH----TTC------CCEEEECSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHh----CCC------CcEEEEECCC
Confidence 45789999999999999998884 562 2688888754
No 177
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=70.32 E-value=9 Score=40.86 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=26.7
Q ss_pred CCcCCCceEEecCcchhhHHHHHHHHHHHhcc
Q psy14377 702 KTRLSDNTILFQGAGEGTASVAVAGLLASLRI 733 (848)
Q Consensus 702 ~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~ 733 (848)
+..|.+.++.|+|.|.- |..+|+.+...+.
T Consensus 145 ~~~l~g~~vgIIG~G~i--G~~iA~~l~~~G~ 174 (334)
T 2dbq_A 145 GYDVYGKTIGIIGLGRI--GQAIAKRAKGFNM 174 (334)
T ss_dssp CCCCTTCEEEEECCSHH--HHHHHHHHHHTTC
T ss_pred ccCCCCCEEEEEccCHH--HHHHHHHHHhCCC
Confidence 45789999999999999 9999999988764
No 178
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=70.28 E-value=4.1 Score=42.38 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=28.7
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+.+|||+|||.+|+++|.-|.+ .|. +|.++|+...
T Consensus 3 ~~dvvIIGaG~~Gl~~A~~La~----~G~-------~V~vie~~~~ 37 (389)
T 2gf3_A 3 HFDVIVVGAGSMGMAAGYQLAK----QGV-------KTLLVDAFDP 37 (389)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSCS
T ss_pred cCCEEEECCCHHHHHHHHHHHh----CCC-------eEEEEeCCCC
Confidence 4689999999999999998874 574 6899998543
No 179
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=70.28 E-value=2.5 Score=49.45 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=33.8
Q ss_pred cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+|++.||+|+|||..|..+|+.|+.+ | ..+|.++|.+=
T Consensus 323 kL~~arVLIVGaGGLGs~vA~~La~a----G------VG~ItLvD~D~ 360 (615)
T 4gsl_A 323 IIKNTKVLLLGAGTLGCYVSRALIAW----G------VRKITFVDNGT 360 (615)
T ss_dssp HHHTCEEEEECCSHHHHHHHHHHHHT----T------CCEEEEECCCB
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHc----C------CCEEEEEcCCC
Confidence 68889999999999999999998876 9 57999999864
No 180
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=70.11 E-value=3.9 Score=44.51 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=27.4
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+|||+|||.||+++|.-+.+ .|. +|.++|+..
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~----~g~-------~V~lie~~~ 34 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQ----LGM-------KVGVVEKEK 34 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESSS
T ss_pred CCEEEECCChhHHHHHHHHHH----CCC-------eEEEEeCCC
Confidence 579999999999999987774 564 689999763
No 181
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=70.02 E-value=2.3 Score=49.72 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=33.9
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+|++.||+|+|||..|..+|..|+.+ | .++|.++|.+
T Consensus 323 ~kL~~~kVLIVGaGGLGs~va~~La~a----G------VG~ItLvD~D 360 (598)
T 3vh1_A 323 DIIKNTKVLLLGAGTLGCYVSRALIAW----G------VRKITFVDNG 360 (598)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHTT----T------CCEEEEECCS
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc----C------CCEEEEECCC
Confidence 678999999999999999999987765 8 5799999975
No 182
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=69.94 E-value=3.6 Score=44.95 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=27.8
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+.+|||+|||.||+++|.-+. +.|. +|.++|+.
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~----~~g~-------~V~liE~~ 36 (450)
T 1ges_A 4 HYDYIAIGGGSGGIASINRAA----MYGQ-------KCALIEAK 36 (450)
T ss_dssp EEEEEEECCSHHHHHHHHHHH----TTTC-------CEEEEESS
T ss_pred cCCEEEECCCHHHHHHHHHHH----hCCC-------eEEEEcCC
Confidence 468999999999999999877 3563 78999975
No 183
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=69.89 E-value=3.5 Score=43.10 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=28.6
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+.+|||+|||.+|+++|..|.+ ..|. .+|.++|+..
T Consensus 21 ~~dVvIIG~G~~Gl~~A~~La~---~~G~------~~V~vlE~~~ 56 (405)
T 2gag_B 21 SYDAIIVGGGGHGLATAYFLAK---NHGI------TNVAVLEKGW 56 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH---HHCC------CCEEEECSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHH---hcCC------CcEEEEeCCC
Confidence 5789999999999999998873 1461 2689999865
No 184
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=69.89 E-value=3.6 Score=44.79 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=28.1
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+.+|||+|||.||+++|..+.. .|. +|.++|+..
T Consensus 6 ~~dvvIIGaG~aGl~aA~~l~~----~g~-------~V~liE~~~ 39 (470)
T 1dxl_A 6 ENDVVIIGGGPGGYVAAIKAAQ----LGF-------KTTCIEKRG 39 (470)
T ss_dssp CCCEEEECCSHHHHHHHHHHHH----HTC-------CEEEEECSS
T ss_pred cCCEEEECCCHHHHHHHHHHHH----CCC-------eEEEEeCCC
Confidence 4679999999999999998774 564 689999863
No 185
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=69.88 E-value=3.7 Score=42.26 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=27.7
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
...+|||+|||.||+++|..+.. .|. ++.++|+.
T Consensus 13 ~~~~vvIIG~G~aGl~aA~~l~~----~g~-------~v~lie~~ 46 (335)
T 2a87_A 13 PVRDVIVIGSGPAGYTAALYAAR----AQL-------APLVFEGT 46 (335)
T ss_dssp CCEEEEEECCHHHHHHHHHHHHH----TTC-------CCEEECCS
T ss_pred CcCCEEEECCCHHHHHHHHHHHh----CCC-------eEEEEecC
Confidence 45689999999999999998874 574 57888853
No 186
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=69.81 E-value=3.6 Score=43.29 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=27.6
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+|+|+|||.||+++|..|.. .|+ ++.++|+..
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~----~G~-------~v~v~E~~~ 35 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHK----AGI-------DNVILERQT 35 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHH----HTC-------CEEEECSSC
T ss_pred ccEEEECCCHHHHHHHHHHHH----CCC-------CEEEEeCCC
Confidence 579999999999999998874 675 578888754
No 187
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=69.79 E-value=3.1 Score=45.17 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=28.6
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++.+|+|+|||+||++||..+.+ .|. ++.++|+..
T Consensus 3 ~~~dViIIGgG~aGl~aA~~la~----~G~-------~V~vlEk~~ 37 (401)
T 2gqf_A 3 QYSENIIIGAGAAGLFCAAQLAK----LGK-------SVTVFDNGK 37 (401)
T ss_dssp EECSEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSS
T ss_pred CCCCEEEECCcHHHHHHHHHHHh----CCC-------CEEEEeCCC
Confidence 35689999999999999998774 674 688888754
No 188
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=69.63 E-value=4 Score=42.25 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=28.7
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+..|||+|||.+|+++|..|.+ .|. +|.++|+...
T Consensus 2 ~~dvvIIG~Gi~Gl~~A~~La~----~G~-------~V~vle~~~~ 36 (372)
T 2uzz_A 2 KYDLIIIGSGSVGAAAGYYATR----AGL-------NVLMTDAHMP 36 (372)
T ss_dssp CEEEEESCTTHHHHHHHHHHHH----TTC-------CEEEECSSCS
T ss_pred CCCEEEECCCHHHHHHHHHHHH----CCC-------eEEEEecCCC
Confidence 3579999999999999998874 574 6899998654
No 189
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=69.52 E-value=4.6 Score=44.84 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=31.9
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR 64 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R 64 (848)
+..+|||+|||.||+++|+-|.. .+.. .+|.++|+...+.-.|
T Consensus 10 ~~~~vvIIGgG~AGl~aA~~L~~----~~~g-----~~V~lie~~~~~~y~r 52 (493)
T 1m6i_A 10 SHVPFLLIGGGTAAFAAARSIRA----RDPG-----ARVLIVSEDPELPYMR 52 (493)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHH----HSTT-----CEEEEEESSSSCCBCS
T ss_pred CcCCEEEECChHHHHHHHHHHHh----cCCC-----CeEEEEeCCCCCCCCC
Confidence 45789999999999999997764 3222 4899999876443334
No 190
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=69.40 E-value=4.2 Score=44.72 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=32.3
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++...|++|+|+|.+|.++++++. .+|. +|+++|+..-
T Consensus 169 ~l~g~~V~ViGaG~iG~~aa~~a~----~~Ga-------~V~v~D~~~~ 206 (401)
T 1x13_A 169 KVPPAKVMVIGAGVAGLAAIGAAN----SLGA-------IVRAFDTRPE 206 (401)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHH----HTTC-------EEEEECSCGG
T ss_pred CcCCCEEEEECCCHHHHHHHHHHH----HCCC-------EEEEEcCCHH
Confidence 467889999999999999999887 4784 6999998654
No 191
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=68.85 E-value=4.2 Score=41.61 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=28.1
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhc-CCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKE-GTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~-G~~~e~~~~ni~m~DskG 58 (848)
.+..|||+|||.||+++|..+. +. |+ ++.++|+..
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la----~~~G~-------~V~viEk~~ 73 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEIS----KNPNV-------QVAIIEQSV 73 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHH----TSTTS-------CEEEEESSS
T ss_pred cccCEEEECccHHHHHHHHHHH----HcCCC-------eEEEEECCC
Confidence 4568999999999999999887 34 64 688888753
No 192
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=68.68 E-value=2.8 Score=45.29 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=28.9
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
..+|||+|||.||+++|..|.. .|.+. ..-+|.++|+..-
T Consensus 30 ~~dVvIIGaG~aGl~aA~~L~~----~g~~~--~~~~v~liE~~~~ 69 (463)
T 3s5w_A 30 VHDLIGVGFGPSNIALAIALQE----RAQAQ--GALEVLFLDKQGD 69 (463)
T ss_dssp EESEEEECCSHHHHHHHHHHHH----HHHHH--CCCCEEEEESCSS
T ss_pred cCCEEEECCCHHHHHHHHHHHh----ccccc--CcccEEEEecCCC
Confidence 3579999999999999998874 45110 0027899988654
No 193
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=68.59 E-value=4.1 Score=42.04 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=28.6
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
..+|+|+|||.||+..|..+.+. |. +++.++|+..
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~----g~------~~v~lie~~~ 38 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDF----GI------TDVIILEKGT 38 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT----TC------CCEEEECSSS
T ss_pred cCcEEEECcCHHHHHHHHHHHHc----CC------CcEEEEecCC
Confidence 46899999999999999987653 62 2799999875
No 194
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=68.54 E-value=4.8 Score=45.19 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=29.7
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
-++.+|||+|||.||+++|..|.+ .|+ ++.++|+..
T Consensus 14 ~~~~dVvIIGaG~aGl~aA~~L~~----~G~-------~v~iiE~~~ 49 (542)
T 1w4x_A 14 PEEVDVLVVGAGFSGLYALYRLRE----LGR-------SVHVIETAG 49 (542)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSS
T ss_pred CCCCCEEEECccHHHHHHHHHHHh----CCC-------CEEEEeCCC
Confidence 346799999999999999998884 575 688888764
No 195
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=68.44 E-value=4.5 Score=43.88 Aligned_cols=34 Identities=32% Similarity=0.430 Sum_probs=27.7
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
++.|||+|||-||++||..|.+ ..|. +|.++++.
T Consensus 10 ~~DVvIIGaGisGLsaA~~L~k---~~G~-------~V~VlE~~ 43 (513)
T 4gde_A 10 SVDVLVIGAGPTGLGAAKRLNQ---IDGP-------SWMIVDSN 43 (513)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH---HCCS-------CEEEEESS
T ss_pred CCCEEEECCcHHHHHHHHHHHh---hCCC-------CEEEEECC
Confidence 5789999999999999998874 2463 68888875
No 196
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=68.33 E-value=3.7 Score=44.65 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=26.1
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
||||+|||-+|++||-.|.+ .|. ++.++.+..
T Consensus 3 ~VvVIGaG~~GL~aA~~La~----~G~-------~V~VlEa~~ 34 (501)
T 4dgk_A 3 PTTVIGAGFGGLALAIRLQA----AGI-------PVLLLEQRD 34 (501)
T ss_dssp CEEEECCHHHHHHHHHHHHH----TTC-------CEEEECCC-
T ss_pred CEEEECCcHHHHHHHHHHHH----CCC-------cEEEEccCC
Confidence 69999999999999998874 674 678877753
No 197
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=68.32 E-value=9.5 Score=39.58 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=33.9
Q ss_pred HHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 230 SLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 230 Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
++...+..|++.+++|+|+|..|..+|+.+... |. +++.+|+
T Consensus 145 ~l~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~----G~-------~V~~~dr 186 (293)
T 3d4o_A 145 AIQHTDFTIHGANVAVLGLGRVGMSVARKFAAL----GA-------KVKVGAR 186 (293)
T ss_dssp HHHHCSSCSTTCEEEEECCSHHHHHHHHHHHHT----TC-------EEEEEES
T ss_pred HHHhcCCCCCCCEEEEEeeCHHHHHHHHHHHhC----CC-------EEEEEEC
Confidence 445568899999999999999999999987654 62 5777765
No 198
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=68.30 E-value=3.6 Score=44.73 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=27.5
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+.+|||+|||.||+++|.-+.+ .|. +|.++|+.
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~----~g~-------~V~lie~~ 35 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQ----LGQ-------KVTIVEKG 35 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESS
T ss_pred cCCEEEECCCHHHHHHHHHHHh----CCC-------eEEEEECC
Confidence 3579999999999999987774 674 78999985
No 199
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=68.07 E-value=4.4 Score=45.29 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=29.1
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+.+|||+|||.||+++|.-+.+ .|. +|.++|+..
T Consensus 42 ~~~dVvIIGgG~aGl~aA~~l~~----~G~-------~V~liE~~~ 76 (523)
T 1mo9_A 42 REYDAIFIGGGAAGRFGSAYLRA----MGG-------RQLIVDRWP 76 (523)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHH----CCC-------CEEEEeCCC
Confidence 45789999999999999998874 564 689999864
No 200
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Probab=67.98 E-value=3.1 Score=43.09 Aligned_cols=86 Identities=19% Similarity=0.133 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCC-chH-HHhhh--------
Q psy14377 690 AVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEG-TAS-VAIAG-------- 759 (848)
Q Consensus 690 ~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~-~~~-~~~~~-------- 759 (848)
...|++.+++-.+.++++.+++|.|||.+ |-++|..|...+ ++.+++ |... -.. .+..+
T Consensus 111 d~~G~~~~L~~~~~~l~~k~vlV~GaGgi--G~aia~~L~~~G--~V~v~~-------r~~~~~~~l~~~~~~~~~~~~~ 179 (287)
T 1nvt_A 111 DGIGARMALEEEIGRVKDKNIVIYGAGGA--ARAVAFELAKDN--NIIIAN-------RTVEKAEALAKEIAEKLNKKFG 179 (287)
T ss_dssp HHHHHHHHHHHHHCCCCSCEEEEECCSHH--HHHHHHHHTSSS--EEEEEC-------SSHHHHHHHHHHHHHHHTCCHH
T ss_pred CHHHHHHHHHHhCCCcCCCEEEEECchHH--HHHHHHHHHHCC--CEEEEE-------CCHHHHHHHHHHHhhhcccccc
Confidence 56888899988788899999999999988 999999998876 554443 2111 011 11100
Q ss_pred ccccchhhccccCCCceEEeecCCCcc
Q psy14377 760 LLASLRITKTRLSDNTILFQGSGEGTA 786 (848)
Q Consensus 760 ~~~~~r~~~~~~~~~~~~~~~s~~~~~ 786 (848)
...+...+.+.+.++||.+...+-|..
T Consensus 180 ~~~d~~~~~~~~~~~DilVn~ag~~~~ 206 (287)
T 1nvt_A 180 EEVKFSGLDVDLDGVDIIINATPIGMY 206 (287)
T ss_dssp HHEEEECTTCCCTTCCEEEECSCTTCT
T ss_pred eeEEEeeHHHhhCCCCEEEECCCCCCC
Confidence 011111225677899999988776653
No 201
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=67.95 E-value=5.9 Score=41.23 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=28.6
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+..|||+|||.+|+++|-.|.+ .|. +|.++|+..
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~----~G~-------~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILAR----KGY-------SVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHH----TTC-------EEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHh----CCC-------EEEEEeccC
Confidence 5689999999999999998863 574 799999865
No 202
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=67.81 E-value=4 Score=42.27 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=27.8
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.+..|+|+|||.||++||.-+.+ ...|+ ++.++|+.
T Consensus 64 ~~~DV~IIGaGPAGlsAA~~la~--~r~G~-------~V~viEk~ 99 (326)
T 3fpz_A 64 AVSDVIIVGAGSSGLSAAYVIAK--NRPDL-------KVCIIESS 99 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHH--HCTTS-------CEEEECSS
T ss_pred cCCCEEEECCCHHHHHHHHHHHH--hCCCC-------eEEEEECC
Confidence 35579999999999999997753 13575 68888874
No 203
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=67.81 E-value=5 Score=42.94 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=29.9
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
+..|||+|||.||+++|-.|.+ .|. ++|.++|+....
T Consensus 6 ~~dVvIIGgG~aGlsaA~~La~----~G~------~~V~vlE~~~~~ 42 (438)
T 3dje_A 6 SSSLLIVGAGTWGTSTALHLAR----RGY------TNVTVLDPYPVP 42 (438)
T ss_dssp TSCEEEECCSHHHHHHHHHHHH----TTC------CCEEEEESSCSS
T ss_pred CCCEEEECCCHHHHHHHHHHHH----cCC------CcEEEEeCCCCC
Confidence 5689999999999999998874 674 279999986543
No 204
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=67.78 E-value=4.2 Score=44.47 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=28.4
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+.+|||+|||.||+++|.-+.+ .|. +|.++|+..
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~----~g~-------~V~liE~~~ 39 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQ----LGF-------KTVCIEKNE 39 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHh----CCC-------eEEEEeCCC
Confidence 4689999999999999998874 574 689999864
No 205
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A
Probab=67.59 E-value=9.4 Score=43.13 Aligned_cols=57 Identities=19% Similarity=0.259 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR 290 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r 290 (848)
.-++-.+++-.|.+|++.|++|+|.|..|...|++|.+. | .+=+-+.|++|.++...
T Consensus 214 ~~~~~~~~~~~G~~l~g~~v~VqG~GnVG~~~a~~L~~~----G------akvVavsD~~G~i~dp~ 270 (449)
T 1bgv_A 214 VYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAEL----G------AKAVTLSGPDGYIYDPE 270 (449)
T ss_dssp HHHHHHHHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHH----T------CEEEEEEETTEEEECTT
T ss_pred HHHHHHHHHHccCCcCCCEEEEECCCHHHHHHHHHHHHC----C------CEEEEEEeCCceEECCC
Confidence 336677788889999999999999999999999887765 7 34455799999998743
No 206
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=67.52 E-value=5.1 Score=43.19 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=28.5
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+|||+|||.||+++|..|.+ .|.+ .+|.++++..
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~----~G~~-----~~V~vlEa~~ 37 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSR----APCP-----PKVVLVESSE 37 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHT----SSSC-----CEEEEECSSS
T ss_pred ceEEEECCcHHHHHHHHHHHh----CCCC-----CcEEEEeCCC
Confidence 479999999999999998873 5642 2899999854
No 207
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=67.51 E-value=4 Score=42.18 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=49.1
Q ss_pred HHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchhhccccC
Q psy14377 693 GLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLS 772 (848)
Q Consensus 693 gllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~~~~~~~ 772 (848)
|++.+++-. .+++ +++|+|||.+ |-+++..|...+++++.+.+.-. .+-+.. .+..+. .....+++.+.
T Consensus 97 G~~~~l~~~--~~~~-~vliiGaGg~--a~ai~~~L~~~G~~~I~v~nR~~---~ka~~l--a~~~~~-~~~~~~~~~~~ 165 (253)
T 3u62_A 97 GVVKSLEGV--EVKE-PVVVVGAGGA--ARAVIYALLQMGVKDIWVVNRTI---ERAKAL--DFPVKI-FSLDQLDEVVK 165 (253)
T ss_dssp HHHHHTTTC--CCCS-SEEEECCSHH--HHHHHHHHHHTTCCCEEEEESCH---HHHHTC--CSSCEE-EEGGGHHHHHH
T ss_pred HHHHHHHhc--CCCC-eEEEECcHHH--HHHHHHHHHHcCCCEEEEEeCCH---HHHHHH--HHHccc-CCHHHHHhhhc
Confidence 677777654 5788 9999999999 99999999998876666555210 000000 000010 11123455678
Q ss_pred CCceEEeecC
Q psy14377 773 DNTILFQGSG 782 (848)
Q Consensus 773 ~~~~~~~~s~ 782 (848)
++||.+....
T Consensus 166 ~aDiVInatp 175 (253)
T 3u62_A 166 KAKSLFNTTS 175 (253)
T ss_dssp TCSEEEECSS
T ss_pred CCCEEEECCC
Confidence 8999996543
No 208
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=67.50 E-value=5.4 Score=43.60 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=28.8
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
...+|+|+|||.||+++|..|.+ .|. ++.++++.
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~----~G~-------~V~VlE~~ 76 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTR----AGH-------DVTILEAN 76 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHH----TSC-------EEEEECSC
T ss_pred CCceEEEECCCHHHHHHHHHHHH----CCC-------cEEEEecc
Confidence 46799999999999999999884 574 78888875
No 209
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=67.48 E-value=4.7 Score=45.83 Aligned_cols=39 Identities=5% Similarity=0.220 Sum_probs=30.6
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
..++++|++|+|+|+.|+-+|..|... | +++.++.+..-
T Consensus 187 ~~~~~krV~VIG~G~sgve~a~~l~~~----~-------~~Vtv~~r~~~ 225 (549)
T 4ap3_A 187 VDFTGKRVGVIGTGSSGIQSIPIIAEQ----A-------EQLFVFQRSAN 225 (549)
T ss_dssp CCCBTCEEEEECCSHHHHHHHHHHHHH----B-------SEEEEEESSCC
T ss_pred cccCCCEEEEECCCchHHHHHHHHHhh----C-------CEEEEEECCCC
Confidence 345678999999999999998877654 3 57888888764
No 210
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=67.43 E-value=4.5 Score=44.89 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=27.7
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+|||+|||.||+++|.-+.+ .|. +|.++|+.-
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~----~g~-------~V~liE~~~ 35 (500)
T 1onf_A 3 YDLIVIGGGSGGMAAARRAAR----HNA-------KVALVEKSR 35 (500)
T ss_dssp BSEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESSS
T ss_pred cCEEEECCCHHHHHHHHHHHH----CCC-------cEEEEeCCC
Confidence 579999999999999998874 564 689999863
No 211
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=67.40 E-value=3 Score=46.75 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=29.2
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhc---CCChhhhcCcEEEEcCCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKE---GTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~---G~s~~eA~~~i~~vD~kG 284 (848)
.+++|+|+|..|+-+|-.+.+...+. ..+......+|.+++...
T Consensus 218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~ 264 (502)
T 4g6h_A 218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALP 264 (502)
T ss_dssp TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSS
T ss_pred cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccc
Confidence 47999999999999998887653221 111122245788887754
No 212
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=67.36 E-value=4.8 Score=43.43 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=28.2
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
.+|||+|||.||+++|..|.. +|-. -+|.++|+.-.
T Consensus 3 ~~vvIIGgG~aGl~aA~~L~~----~~~g-----~~Vtlie~~~~ 38 (430)
T 3h28_A 3 KHVVVIGGGVGGIATAYNLRN----LMPD-----LKITLISDRPY 38 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHH----HCTT-----CEEEEECSSSE
T ss_pred CCEEEECccHHHHHHHHHHHc----CCCC-----CeEEEECCCCC
Confidence 379999999999999998874 3321 38999998644
No 213
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=67.31 E-value=4.9 Score=44.89 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=31.0
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++-++.+|+|+|||.||+++|..|.. .|+ ++.++|+.--
T Consensus 7 ~~~~~~dVlIVGaGpaGl~~A~~La~----~G~-------~v~vlE~~~~ 45 (500)
T 2qa1_A 7 HHRSDAAVIVVGAGPAGMMLAGELRL----AGV-------EVVVLERLVE 45 (500)
T ss_dssp -CCSBCSEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESCCC
T ss_pred CccCCCCEEEECcCHHHHHHHHHHHH----CCC-------CEEEEeCCCC
Confidence 34567889999999999999998874 786 5788887543
No 214
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=67.28 E-value=4.7 Score=42.64 Aligned_cols=33 Identities=30% Similarity=0.207 Sum_probs=27.4
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhc--CCCccccCCeEEEEcCCCc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKE--GTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~--G~~~e~~~~ni~m~DskGv 59 (848)
+|+|+|||.||+++|-.|.. . |+ ++.++|+..-
T Consensus 2 dV~IVGaG~aGl~~A~~L~~----~~~G~-------~V~v~E~~~~ 36 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQ----ARPLW-------AIDIVEKNDE 36 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHH----HCTTS-------EEEEECSSCT
T ss_pred eEEEECCCHHHHHHHHHHHh----cCCCC-------CEEEEECCCC
Confidence 69999999999999998874 5 74 6889888544
No 215
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}
Probab=67.11 E-value=6.4 Score=44.78 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR 290 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r 290 (848)
.-++-.+++..|.+|++.|++|+|.|..|...|+.+.+. | .+-+-+.|++|-|+...
T Consensus 236 ~~~~~~~l~~~G~~l~g~~vaVqG~GnVG~~~a~~L~~~----G------akvVavsD~~G~i~dp~ 292 (470)
T 2bma_A 236 VYFVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHL----N------VKVLTLSDSNGYVYEPN 292 (470)
T ss_dssp HHHHHHHHHTTTCCGGGCEEEEECSSHHHHHHHHHHHHT----T------CEECEEEETTEEEECSS
T ss_pred HHHHHHHHHhccCCcCCCEEEEECCcHHHHHHHHHHHHC----C------CEEEEEEeCCceEECCC
Confidence 446777888889999999999999999999999988764 7 33444999999998743
No 216
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=67.03 E-value=4.8 Score=44.11 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=28.2
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+.+|||+|||.||+++|.-+.+ .|. ++.++|++.
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~----~G~-------~V~liEk~~ 37 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAK----AKY-------NVLMADPKG 37 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECTTS
T ss_pred cceEEEECCCHHHHHHHHHHHh----CCC-------eEEEEECCC
Confidence 4689999999999999998874 674 689999654
No 217
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=66.67 E-value=4.2 Score=45.19 Aligned_cols=35 Identities=11% Similarity=0.343 Sum_probs=29.3
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+.+|||+|||.||+++|..|. +.|+ +|.++|+.-
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La----~~G~-------~V~liE~~~ 40 (512)
T 3e1t_A 6 EVFDLIVIGGGPGGSTLASFVA----MRGH-------RVLLLEREA 40 (512)
T ss_dssp EEEEEEEECCSHHHHHHHHHHH----TTTC-------CEEEECSSC
T ss_pred ccCCEEEECcCHHHHHHHHHHH----hCCC-------CEEEEccCC
Confidence 4578999999999999999887 4675 688988865
No 218
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=66.57 E-value=3.8 Score=44.07 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=29.7
Q ss_pred CCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 9 KTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 9 gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+..+++.+|||+|||.+|+++|..|.. .|- .+|.++|+.
T Consensus 18 ~~~m~~~dVvIIGgGiaGls~A~~La~----~G~------~~V~vlE~~ 56 (448)
T 3axb_A 18 GSHMPRFDYVVVGAGVVGLAAAYYLKV----WSG------GSVLVVDAG 56 (448)
T ss_dssp ---CCEEEEEEECCSHHHHHHHHHHHH----HHC------SCEEEEESS
T ss_pred cccCCcCCEEEECcCHHHHHHHHHHHh----CCC------CcEEEEccC
Confidence 344667899999999999999998874 451 379999983
No 219
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=66.39 E-value=5.1 Score=44.68 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=30.2
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++.+|+|+|||.+|+++|..|.. .|+ ++.++|+..-
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~----~G~-------~v~vlE~~~~ 46 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRL----GGV-------DVMVLEQLPQ 46 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESCSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHH----CCC-------CEEEEECCCC
Confidence 67899999999999999998874 786 5788887543
No 220
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=66.33 E-value=4.7 Score=44.06 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=28.4
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+.+|||+|||.||+++|..+.+ .|. +|.++|+..
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~----~G~-------~V~liE~~~ 38 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQ----LGF-------NTACVEKRG 38 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESSS
T ss_pred cCCEEEECCCHHHHHHHHHHHH----CCC-------eEEEEecCC
Confidence 4689999999999999998874 674 689999843
No 221
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=66.15 E-value=3.4 Score=44.59 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=34.1
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+++++.||+++|+|..|..+++.|+. .|+ .+|.++|..=+
T Consensus 32 ~~L~~~~VlivG~GGlG~~ia~~La~----~Gv------g~itlvD~d~V 71 (346)
T 1y8q_A 32 KRLRASRVLLVGLKGLGAEIAKNLIL----AGV------KGLTMLDHEQV 71 (346)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHH----HTC------SEEEEECCCBC
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHH----cCC------CEEEEEECCCc
Confidence 46788999999999999999998884 687 49999997543
No 222
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=66.00 E-value=4.3 Score=44.87 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=27.8
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhc---CCCccccCCeEEEEcCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKE---GTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~---G~~~e~~~~ni~m~DskG 58 (848)
.+|||+|||.||+++|.-+.+ . |. +|.++|+..
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~----~~~~G~-------~V~liE~~~ 38 (499)
T 1xdi_A 3 TRIVILGGGPAGYEAALVAAT----SHPETT-------QVTVIDCDG 38 (499)
T ss_dssp EEEEEECCSHHHHHHHHHHHH----HCTTTE-------EEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHh----CCCCcC-------EEEEEeCCC
Confidence 579999999999999998874 4 63 799999864
No 223
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=65.58 E-value=5.2 Score=43.50 Aligned_cols=32 Identities=6% Similarity=0.111 Sum_probs=27.3
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhc--CCCccccCCeEEEEcCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKE--GTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~--G~~~e~~~~ni~m~DskG 58 (848)
+|||+|||.||+++|.-+.+ . | .+|.++|+..
T Consensus 2 dvvIIGgG~aGl~aA~~l~~----~~~g-------~~V~lie~~~ 35 (452)
T 2cdu_A 2 KVIVVGCTHAGTFAVKQTIA----DHPD-------ADVTAYEMND 35 (452)
T ss_dssp EEEEECCSHHHHHHHHHHHH----HCTT-------CEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHh----hCcC-------CcEEEEECCC
Confidence 69999999999999998874 4 4 4899999865
No 224
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=65.53 E-value=3.5 Score=48.11 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=35.1
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++|++.||+++|||..|..+|+.|. ..|+ .+|.++|..=|
T Consensus 323 ~kL~~~kVLIVGaGGLGs~va~~La----~aGV------G~ItLvD~D~V 362 (598)
T 3vh1_A 323 DIIKNTKVLLLGAGTLGCYVSRALI----AWGV------RKITFVDNGTV 362 (598)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHH----TTTC------CEEEEECCSBC
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHH----HcCC------CEEEEECCCcc
Confidence 7899999999999999999999888 4787 49999997644
No 225
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=65.41 E-value=5.5 Score=42.91 Aligned_cols=34 Identities=15% Similarity=0.317 Sum_probs=28.4
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhc-CCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKE-GTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~-G~~~e~~~~ni~m~DskG 58 (848)
+.+|+|+|||.||+++|..|.+ . | .++.++++..
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~----~~g-------~~v~v~E~~~ 41 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVAT----QLD-------KRVLVLERRP 41 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHH----HSC-------CCEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHH----hCC-------CCEEEEeCCC
Confidence 6789999999999999998885 4 6 3788888763
No 226
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=65.12 E-value=6.6 Score=42.48 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=30.1
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
...+|+|+|||.+|++||..|.+ .|-+ .+|.++++...
T Consensus 3 ~~~~v~IiGaG~~Gl~~A~~L~~----~g~~-----~~v~v~E~~~~ 40 (475)
T 3lov_A 3 SSKRLVIVGGGITGLAAAYYAER----AFPD-----LNITLLEAGER 40 (475)
T ss_dssp CSCEEEEECCBHHHHHHHHHHHH----HCTT-----SEEEEECSSSS
T ss_pred CcccEEEECCCHHHHHHHHHHHH----hCCC-----CCEEEEECCCC
Confidence 35689999999999999998884 5621 48999998643
No 227
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=65.03 E-value=5.2 Score=44.40 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=28.7
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
...+|+|+|+|.||+++|.-|.. .|. ++.++|+..
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~----~G~-------~V~v~e~~~ 155 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRA----KGY-------EVHVYDRYD 155 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHH----HTC-------CEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHH----CCC-------eEEEEeccC
Confidence 35689999999999999998874 574 689998753
No 228
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=65.01 E-value=3.6 Score=44.47 Aligned_cols=40 Identities=15% Similarity=0.391 Sum_probs=34.4
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+++++.||+++|+|..|-.+++.|.. .|+ .+|.++|..=+
T Consensus 114 ~~L~~~~VlvvG~GglGs~va~~La~----aGv------g~i~lvD~D~V 153 (353)
T 3h5n_A 114 DKLKNAKVVILGCGGIGNHVSVILAT----SGI------GEIILIDNDQI 153 (353)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHH----HTC------SEEEEEECCBC
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHh----CCC------CeEEEECCCcC
Confidence 57889999999999999999998884 687 48999998544
No 229
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=64.94 E-value=8.1 Score=35.81 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=29.0
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
++...-+|+|+|+|.-|..+++.+.. .|. +|+++|+.
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~----~g~-------~V~vid~~ 51 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASS----SGH-------SVVVVDKN 51 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHH----TTC-------EEEEEESC
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHh----CCC-------eEEEEECC
Confidence 45566799999999999999998874 663 78888874
No 230
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=64.92 E-value=5.6 Score=44.22 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=30.1
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
.+.+|+|+|||.||+++|..|. +.|+ ++.++|+.--+
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La----~~G~-------~v~viEr~~~~ 40 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLA----RQGV-------RVLVVERRPGL 40 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHH----TTTC-------CEEEECSSSSC
T ss_pred ccCcEEEECcCHHHHHHHHHHH----HCCC-------CEEEEeCCCCC
Confidence 4578999999999999999887 4685 57888876543
No 231
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=64.70 E-value=5.4 Score=43.27 Aligned_cols=35 Identities=6% Similarity=0.104 Sum_probs=27.7
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+|||+|||.||+++|.-+.. .+-. .+|.++|+...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~----~~~g-----~~V~lie~~~~ 36 (447)
T 1nhp_A 2 KVIVLGSSHGGYEAVEELLN----LHPD-----AEIQWYEKGDF 36 (447)
T ss_dssp EEEEECSSHHHHHHHHHHHH----HCTT-----SEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHH----hCcC-----CeEEEEECCCc
Confidence 69999999999999998874 4211 48999998654
No 232
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=64.62 E-value=14 Score=39.20 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhh----------------hCCcCCCceEEecCcchhhHHHHHHHHHHHhcc
Q psy14377 686 TASVAVAGLLASLRI----------------TKTRLSDNTILFQGAGEGTASVAVAGLLASLRI 733 (848)
Q Consensus 686 TaaV~LAgllaAlr~----------------t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~ 733 (848)
+|=-+++.+|+..|- .+..+.+.++.|+|.|.- |-.+|+.+...+.
T Consensus 105 vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~~vgIIG~G~I--G~~~A~~l~~~G~ 166 (313)
T 2ekl_A 105 AVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRI--GTKVGIIANAMGM 166 (313)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCTTCEEEEESCSHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCEEEEEeeCHH--HHHHHHHHHHCCC
Confidence 344578888877764 357899999999999999 9999999988764
No 233
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Probab=64.61 E-value=6.3 Score=45.18 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=44.0
Q ss_pred ccccCC--CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhh
Q psy14377 5 LRITKT--RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHK 73 (848)
Q Consensus 5 l~i~gK--~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k 73 (848)
++..|. .++..|++|+|.|..|..+|++|.. +|.+ =|-+.||+|.|+.. ++ ++..+
T Consensus 233 ~~~~G~~~~l~g~tVaVQG~GNVG~~aa~~L~e----~Gak------VVavsDs~G~iyd~--~G-id~~~ 290 (501)
T 3mw9_A 233 MSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHR----FGAK------CITVGESDGSIWNP--DG-IDPKE 290 (501)
T ss_dssp HHHTTCCSSSTTCEEEEECCSHHHHHHHHHHHH----TTCE------EEEEECSSCEEECT--TC-CCHHH
T ss_pred HHHcCCCCCcCCCEEEEECCCHHHHHHHHHHHH----CCCE------EEEEEcCCceEECC--CC-CCHHH
Confidence 445675 4899999999999999999999984 7863 56689999999953 32 66544
No 234
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Probab=64.47 E-value=13 Score=41.59 Aligned_cols=58 Identities=19% Similarity=0.123 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR 290 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r 290 (848)
.-++-.+++-.|.+++..|++|+|.|..|...|++|.+ +.| .+=+-+.|++|.++...
T Consensus 193 ~~~~~~~~~~~g~~l~g~~vaVqG~GnVG~~~a~~L~e---~~G------akvVavsD~~G~i~dp~ 250 (415)
T 2tmg_A 193 KVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQ---ELG------SKVVAVSDSRGGIYNPE 250 (415)
T ss_dssp HHHHHHHHHHTTCCTTTCEEEEECCSHHHHHHHHHHHH---TTC------CEEEEEECSSCEEECTT
T ss_pred HHHHHHHHHHcCCCcCCCEEEEECCcHHHHHHHHHHHH---hcC------CEEEEEEeCCCeEECCC
Confidence 33667788889999999999999999999999988765 136 33444899999988654
No 235
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=64.43 E-value=5.9 Score=42.80 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=27.8
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+.+|+|+|||.+|++||..|.+ .|. +|.++++..
T Consensus 16 ~~~v~iiG~G~~Gl~aa~~l~~----~g~-------~v~v~E~~~ 49 (478)
T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRS----RGT-------DAVLLESSA 49 (478)
T ss_dssp -CCEEEECCBHHHHHHHHHHHT----TTC-------CEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHH----CCC-------CEEEEEcCC
Confidence 4579999999999999998873 564 688988864
No 236
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=64.41 E-value=4.2 Score=44.51 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=26.9
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
+.+|||+|||.||+++|.-+.. .|. +|.++|+
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~----~g~-------~V~lie~ 36 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQ----LGI-------PTVLVEG 36 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH----HTC-------CEEEECS
T ss_pred cCCEEEECCCHHHHHHHHHHHH----CCC-------EEEEEcc
Confidence 4689999999999999987764 563 7899987
No 237
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=64.25 E-value=4.9 Score=43.54 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=28.2
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
-+|||+|||.||+++|.-|.... ..| -+|.++|+.-.
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~-~~g-------~~Vtlie~~~~ 41 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEAL-GSG-------HEVTLISANDY 41 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHH-GGG-------SEEEEECSSSE
T ss_pred CcEEEECCcHHHHHHHHHHhccC-CCc-------CEEEEEeCCCC
Confidence 47999999999999999887421 133 37999988653
No 238
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=64.23 E-value=5.7 Score=43.30 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=27.4
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
..|||+|||.||+++|-.+.. .|. +|.++|+..
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~----~G~-------~V~llEk~~ 59 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAE----EGA-------NVLLLDKGN 59 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHH----CCC-------CEEEEECCC
Confidence 579999999999999997773 574 689988754
No 239
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=64.04 E-value=5.6 Score=42.55 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=28.3
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
++|||+|||.||+..|..|.+. |.+ .+|.++|+..
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~----g~~-----~~V~lie~~~ 36 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQA----KYP-----GRIALINDEK 36 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT----TCC-----SCEEEECCSS
T ss_pred CCEEEEcChHHHHHHHHHHHhh----CcC-----CCEEEEeCCC
Confidence 5799999999999999987654 632 3799988865
No 240
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=63.99 E-value=5 Score=45.47 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=29.1
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+.+|||+|||.||+++|..|.. +.|. +|.++|+..
T Consensus 7 ~~~dVvIIGaG~aGl~aA~~L~~---~~G~-------~v~viE~~~ 42 (540)
T 3gwf_A 7 HTVDAVVIGAGFGGIYAVHKLHH---ELGL-------TTVGFDKAD 42 (540)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH---TTCC-------CEEEEESSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHH---cCCC-------CEEEEECCC
Confidence 45789999999999999997762 3664 689999864
No 241
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=63.90 E-value=7.3 Score=43.42 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=30.2
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
...+|+|+|||.||+++|..+.. .|+ ++.++|+..-+
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~----~G~-------~V~liEk~~~~ 127 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELAL----LGA-------RVVLVEKRIKF 127 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH----TTC-------EEEEEESCSSC
T ss_pred CCCCEEEECccHHHHHHHHHHHH----CCC-------eEEEEEecccc
Confidence 46789999999999999998874 674 78999876543
No 242
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=63.59 E-value=6.1 Score=43.46 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=28.0
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+.+|||+|||.||+++|..+.+ .|. +|.++|+..
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~----~G~-------~V~liE~~~ 39 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAAD----EGL-------KVAIVERYK 39 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESSS
T ss_pred cCCEEEECCCHHHHHHHHHHHh----CCC-------eEEEEeCCC
Confidence 4689999999999999987763 674 689999743
No 243
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=63.54 E-value=5.7 Score=43.93 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=28.4
Q ss_pred CCceEEEeccchhHHHHHHHHHH-HHHh--cCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVM-AMQK--EGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~-am~~--~G~~~e~~~~ni~m~DskG 58 (848)
...+|||+|||.||+.+|.-+.. .... .| -+|.|+|+..
T Consensus 2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g-------~~V~lie~~~ 43 (456)
T 1lqt_A 2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLD-------MAVDMLEMLP 43 (456)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCC-------EEEEEEESSS
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhCccccCCC-------CeEEEEecCC
Confidence 34689999999999999998873 2100 04 3799999863
No 244
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=63.19 E-value=6 Score=44.51 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=28.9
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
..+|||+|||.||.++|..|.... ..|+ +|.++|+...
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~~-~~G~-------~V~liE~~~~ 62 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKAL-QGTA-------DITLLQAPDI 62 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHT-TTSS-------EEEEEECCCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhhc-CCCC-------cEEEEeCCCC
Confidence 468999999999999999887410 0453 7999998543
No 245
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=63.18 E-value=3.1 Score=46.55 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=36.5
Q ss_pred ccccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 5 LRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 5 l~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++-..+.+++.||+++|||..|..+++.|.. .|+ .+|.++|..=+
T Consensus 31 ~e~~~~~L~~~~VlvvG~GGlGs~va~~La~----aGv------g~i~ivD~D~V 75 (434)
T 1tt5_B 31 TESLQFLLDTCKVLVIGAGGLGCELLKNLAL----SGF------RQIHVIDMDTI 75 (434)
T ss_dssp SSHHHHHHHTCCEEEECSSTHHHHHHHHHHH----TTC------CCEEEEECCBC
T ss_pred HHHHHHHhcCCEEEEECcCHHHHHHHHHHHH----cCC------CEEEEEcCCEe
Confidence 3444456789999999999999999999884 787 48999997543
No 246
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1
Probab=63.07 E-value=9.9 Score=42.59 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDR 290 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi~~~r 290 (848)
.-++-.+++-.|.+|++.|++|+|.|..|...|+++.+ .| .+=+-+.|++|.++...
T Consensus 194 ~~~~~~~~~~~g~~l~gk~vaVqG~GnVG~~aa~~L~e----~G------akVVavsD~~G~i~dp~ 250 (421)
T 1v9l_A 194 AVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEK----MG------AKVIAVSDINGVAYRKE 250 (421)
T ss_dssp HHHHHHHHHHHHSCCTTCEEEEECCSHHHHHHHHHHHT----TT------CEEEEEECSSCEEECTT
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHH----CC------CEEEEEECCCcEEECCC
Confidence 33667778888999999999999999999999987764 36 33344999999998743
No 247
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=63.03 E-value=4.4 Score=44.09 Aligned_cols=35 Identities=34% Similarity=0.380 Sum_probs=28.4
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+.+|||+|||.||+++|..|. +.|+ ++.++|+...
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La----~~G~-------~V~vlE~~~~ 40 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLS----RRGL-------KILLVDSKPW 40 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHS----SSSC-------CEEEECSSCG
T ss_pred cCCEEEECcCHHHHHHHHHHH----HCCC-------CEEEEECCCC
Confidence 468999999999999999886 4675 6888887543
No 248
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=63.00 E-value=6 Score=42.33 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=28.2
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhc--CCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKE--GTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~--G~~~e~~~~ni~m~DskG 58 (848)
...|||+|||.+|+++|..|.+ . |. +|.++|+..
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~----~~pG~-------~V~vlE~~~ 71 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQ----LAPGR-------SLLLVEEGG 71 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----HCTTS-------CEEEECSSC
T ss_pred cCCEEEECCcHHHHHHHHHHHh----cCCCC-------eEEEEeCCC
Confidence 3689999999999999998874 5 64 689999854
No 249
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=62.79 E-value=6 Score=44.64 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=30.8
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
+-++..|||+|||.||+++|-.+. +.|. +|+++|+...+
T Consensus 123 ~~~~~DVvVVGaG~aGl~aA~~la----~~G~-------~V~vlEk~~~~ 161 (571)
T 1y0p_A 123 PHDTVDVVVVGSGGAGFSAAISAT----DSGA-------KVILIEKEPVI 161 (571)
T ss_dssp CSEECSEEEECCSHHHHHHHHHHH----HTTC-------CEEEECSSSSS
T ss_pred CCCCCCEEEECCCHHHHHHHHHHH----HCCC-------cEEEEeCCCCC
Confidence 344678999999999999998776 3674 68888876543
No 250
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=62.61 E-value=6 Score=43.67 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=29.1
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+.+|||+|||.||+++|.-+.+ .|.+ ..+|.++|+..
T Consensus 35 ~~dvvIIGaG~aGl~aA~~l~~----~g~~----~~~V~lie~~~ 71 (490)
T 2bc0_A 35 GSKIVVVGANHAGTACIKTMLT----NYGD----ANEIVVFDQNS 71 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH----HHGG----GSEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHh----cCCC----CCeEEEEECCC
Confidence 4689999999999999998874 4411 14899999865
No 251
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=62.56 E-value=7.2 Score=42.89 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=27.5
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
+..|||+|||.||+++|.-+.+ .|. ++.++|+
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~----~G~-------~V~liEk 57 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGA----LGK-------RVAIAEE 57 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEEES
T ss_pred CCCEEEECcCHHHHHHHHHHHh----CcC-------EEEEEeC
Confidence 5689999999999999998874 674 6899997
No 252
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=62.29 E-value=5.3 Score=40.50 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=27.6
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
..+|+|+|||.||+..|..+.+ .|. ++.++|+..
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~----~g~-------~v~vie~~~ 36 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRR----SGL-------SYVILDAEA 36 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----SSC-------CEEEECCSS
T ss_pred cCCEEEECcCHHHHHHHHHHHH----CCC-------CEEEEECCC
Confidence 4689999999999999998765 363 588998763
No 253
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=62.17 E-value=7.3 Score=41.45 Aligned_cols=35 Identities=11% Similarity=0.258 Sum_probs=28.2
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccc
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIV 61 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~ 61 (848)
-++||+|||.||+++|.-+. +.| +|.++|+.-...
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~----~~g--------~V~lie~~~~~~ 43 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLS----QTY--------EVTVIDKEPVPY 43 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHT----TTS--------EEEEECSSSSCC
T ss_pred CcEEEECCcHHHHHHHHHHh----hcC--------CEEEEECCCCCc
Confidence 57999999999999999776 244 699999876543
No 254
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=62.08 E-value=6.5 Score=38.88 Aligned_cols=32 Identities=25% Similarity=0.213 Sum_probs=26.7
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+|+|+|||.||+..|..+.+. | .++.++|+.
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~----g-------~~v~lie~~ 34 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRA----R-------KNILLVDAG 34 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT----T-------CCEEEEECC
T ss_pred CCEEEECCCHHHHHHHHHHHhC----C-------CCEEEEeCC
Confidence 5899999999999999987654 6 368898874
No 255
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Probab=61.99 E-value=7.5 Score=40.55 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=38.6
Q ss_pred CceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 676 YCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 676 ~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
..-+|-|.. |+..+++-.+.. .+.+++++|||.+ +-+++..|...+++++.+.+
T Consensus 97 l~g~NTD~~--------G~~~~l~~~~~~-~~~~vlvlGaGga--arav~~~L~~~G~~~i~v~n 150 (271)
T 1npy_A 97 LRAYNTDYI--------AIVKLIEKYHLN-KNAKVIVHGSGGM--AKAVVAAFKNSGFEKLKIYA 150 (271)
T ss_dssp EEEECHHHH--------HHHHHHHHTTCC-TTSCEEEECSSTT--HHHHHHHHHHTTCCCEEEEC
T ss_pred EEeecCCHH--------HHHHHHHHhCCC-CCCEEEEECCcHH--HHHHHHHHHHCCCCEEEEEe
Confidence 445666664 444455444443 5679999999999 99999999998877766554
No 256
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=61.88 E-value=5.6 Score=43.57 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=28.1
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.+.+|+|+|||.||+++|.-+.. .|. ++.++|+.
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~----~G~-------~V~liE~~ 52 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAE----LGA-------RAAVVESH 52 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHH----TTC-------CEEEEESS
T ss_pred CCCCEEEECCCHHHHHHHHHHHh----CCC-------eEEEEecC
Confidence 45789999999999999998874 674 68899854
No 257
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=61.77 E-value=8.6 Score=35.66 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=28.2
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+++...+|+|+|+|..|..+|..+... | .+++++|++
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~~----g-------~~V~vid~~ 51 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASSS----G-------HSVVVVDKN 51 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHT----T-------CEEEEEESC
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhC----C-------CeEEEEECC
Confidence 445668999999999999999987653 6 368888874
No 258
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=61.68 E-value=8 Score=42.13 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=28.9
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
..+|+|+|||.+|++||..|.+ .|. ++.++++..-
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~----~g~-------~v~v~E~~~~ 47 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKI----HGL-------NVTVFEAEGK 47 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT----TSC-------EEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHH----CCC-------cEEEEEeCCC
Confidence 4689999999999999998873 563 7899888644
No 259
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Probab=61.58 E-value=11 Score=42.21 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC-----CcccCCC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK-----GLIVKDR 290 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k-----GLi~~~r 290 (848)
.-++-.+++-.|.+|++.|++|+|.|..|...|++|.+. | .+=+-+.|++ |-++...
T Consensus 196 ~~~~~~~~~~~g~~l~g~~vaVqG~GnVG~~~a~~L~~~----G------akvVavsD~~~~~~~G~i~d~~ 257 (421)
T 2yfq_A 196 AVVVRESAKRFGIKMEDAKIAVQGFGNVGTFTVKNIERQ----G------GKVCAIAEWDRNEGNYALYNEN 257 (421)
T ss_dssp HHHHHHHHHHTTCCGGGSCEEEECCSHHHHHHHHHHHHT----T------CCEEECCBCCSSSCSBCCBCSS
T ss_pred HHHHHHHHHhcCCCccCCEEEEECcCHHHHHHHHHHHHC----C------CEEEEEEecCCCccceEEECCC
Confidence 336777888899999999999999999999999988754 7 3334489999 9988643
No 260
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=61.56 E-value=6.3 Score=43.02 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=28.2
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+..++|+|||.||+++|.-+.. .|. ++.++|+.-
T Consensus 3 ~~DVvVIGgG~aGl~aA~~la~----~G~-------~V~liEk~~ 36 (476)
T 3lad_A 3 KFDVIVIGAGPGGYVAAIKSAQ----LGL-------KTALIEKYK 36 (476)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH----HTC-------CEEEEECCB
T ss_pred cCCEEEECcCHHHHHHHHHHHh----CCC-------EEEEEeCCC
Confidence 4679999999999999998874 574 689999753
No 261
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=61.55 E-value=6.9 Score=43.63 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=28.8
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHh--------cCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQK--------EGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~--------~G~~~e~~~~ni~m~DskG 58 (848)
..+|||+|||.||+++|-.|...... .|+ +|.++++.-
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~-------~V~liE~~~ 52 (526)
T 2pyx_A 7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKL-------NITLIESPD 52 (526)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSC-------EEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCC-------eEEEEeCCC
Confidence 46899999999999999988742100 454 789999854
No 262
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=61.39 E-value=5.3 Score=42.58 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=28.7
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+|||+|||.+|++||..|.+ .|.+. ....+|.++++..
T Consensus 6 ~dVvIIGaGiaGLsaA~~L~~----~G~~~-~~~~~V~vlEa~~ 44 (470)
T 3i6d_A 6 KHVVIIGGGITGLAAAFYMEK----EIKEK-NLPLELTLVEASP 44 (470)
T ss_dssp EEEEEECCSHHHHHHHHHHHH----HHTTT-TCSEEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHH----hcccc-CCCCCEEEEECCC
Confidence 579999999999999998885 45100 0013799999863
No 263
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=61.27 E-value=6.6 Score=34.76 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=25.9
Q ss_pred CCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 238 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 238 l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
++..+|+|+|+|..|..+++.+... | .+++++|++
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~----g-------~~v~~~d~~ 38 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRM----G-------HEVLAVDIN 38 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHT----T-------CCCEEEESC
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHC----C-------CEEEEEeCC
Confidence 4567899999999999999887653 6 257777763
No 264
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=61.27 E-value=5.9 Score=44.41 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHccc-Ccee--ccCCchHHHHHHHHHHHHHhhhCC--------cCCC
Q psy14377 639 EEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNR-YCVF--NDDIQGTASVAVAGLLASLRITKT--------RLSD 707 (848)
Q Consensus 639 defv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~-~~~F--nDDiQGTaaV~LAgllaAlr~t~~--------~l~d 707 (848)
..+++.+...+ |+ |.|+-+....-.++-++|.-+ +|++ |+...+.+.....-|+..++-... .-..
T Consensus 136 ~~~l~~~a~~~-~~--v~~~~vd~~~~~~~~~~~~i~svPt~~i~g~~~~~G~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 212 (521)
T 1hyu_A 136 VQALNLMAVLN-PR--IKHTAIDGGTFQNEITERNVMGVPAVFVNGKEFGQGRMTLTEIVAKVDTGAEKRAAEALNKRDA 212 (521)
T ss_dssp HHHHHHHHHHC-TT--EEEEEEETTTCHHHHHHTTCCSSSEEEETTEEEEESCCCHHHHHHHHCCSSCCHHHHHHHTSCC
T ss_pred HHHHHHHHhHc-Cc--eEEEEEechhhHHHHHHhCCCccCEEEECCEEEecCCCCHHHHHHHHhhcccccccccccccCc
Confidence 44455555567 44 555544444556788888664 6654 666667776666677766543211 1235
Q ss_pred ceEEecCcchhhHHHHHHHHHHHhccc
Q psy14377 708 NTILFQGAGEGTASVAVAGLLASLRIT 734 (848)
Q Consensus 708 ~riv~~GAG~A~~g~giA~ll~~~~~~ 734 (848)
.+++|+|+|.| |+..|..+...+.+
T Consensus 213 ~dVvIIGgG~A--Gl~aA~~la~~G~~ 237 (521)
T 1hyu_A 213 YDVLIVGSGPA--GAAAAVYSARKGIR 237 (521)
T ss_dssp EEEEEECCSHH--HHHHHHHHHHTTCC
T ss_pred ccEEEECCcHH--HHHHHHHHHhCCCe
Confidence 57999999999 99999999987654
No 265
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=61.15 E-value=5.6 Score=46.63 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=34.9
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
.++++.||+++|||..|-.+|+.|.. .|+ .+|.++|..=|
T Consensus 322 ekL~~arVLIVGaGGLGs~vA~~La~----aGV------G~ItLvD~D~V 361 (615)
T 4gsl_A 322 DIIKNTKVLLLGAGTLGCYVSRALIA----WGV------RKITFVDNGTV 361 (615)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHH----TTC------CEEEEECCCBC
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHH----cCC------CEEEEEcCCCC
Confidence 37899999999999999999999884 787 49999998654
No 266
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=61.12 E-value=6.7 Score=44.16 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=29.4
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
.+.+|||+|||.||+++|..|.. .|+ ++.++|+..-
T Consensus 25 ~~~dVlIVGaGpaGl~~A~~La~----~G~-------~V~vlEr~~~ 60 (549)
T 2r0c_A 25 IETDVLILGGGPVGMALALDLAH----RQV-------GHLVVEQTDG 60 (549)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHH----CCC-------CEEEEeCCCC
Confidence 35689999999999999998874 786 5888887643
No 267
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=61.04 E-value=5.7 Score=43.74 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=26.8
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.+|||+|||.||.++|-.|.... ..|+ +|.++|+.-
T Consensus 3 ~dVvIVGgG~aGl~~A~~La~~~-~~G~-------~V~lvE~~~ 38 (511)
T 2weu_A 3 RSVVIVGGGTAGWMTASYLKAAF-DDRI-------DVTLVESGN 38 (511)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHH-GGGS-------EEEEEEC--
T ss_pred ceEEEECCCHHHHHHHHHHHhhc-CCCC-------EEEEEecCC
Confidence 37999999999999999887311 0454 789999864
No 268
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=60.88 E-value=6.9 Score=43.47 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=26.6
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVD 55 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~D 55 (848)
+.+|||+|||.||+++|..+.+ ..|. ++.++|
T Consensus 7 ~~dvvVIGgG~aGl~aA~~la~---~~G~-------~V~liE 38 (495)
T 2wpf_A 7 AFDLVVIGAGSGGLEAGWNAAT---LYGK-------RVAVVD 38 (495)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH---HHCC-------CEEEEE
T ss_pred ccCEEEECCChhHHHHHHHHHH---hcCC-------eEEEEe
Confidence 5689999999999999998863 1564 789999
No 269
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=60.79 E-value=6.4 Score=40.85 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=25.8
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
-||+|+|||.||+..|-.|... |+ ++.++|+.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~----G~-------~v~v~Er~ 33 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKH----GI-------KVTIYERN 33 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT----TC-------EEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC----CC-------CEEEEecC
Confidence 3899999999999999877654 85 47778764
No 270
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=60.34 E-value=8.7 Score=41.86 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=28.5
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
..+|||+|||.+|+++|..|.+ .|. ++.++++..
T Consensus 33 ~~~v~IiGaG~~Gl~aA~~l~~----~g~-------~v~vlE~~~ 66 (498)
T 2iid_A 33 PKHVVIVGAGMAGLSAAYVLAG----AGH-------QVTVLEASE 66 (498)
T ss_dssp CCEEEEECCBHHHHHHHHHHHH----HTC-------EEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHh----CCC-------eEEEEECCC
Confidence 5689999999999999998884 573 788988864
No 271
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=60.29 E-value=7.3 Score=42.25 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=27.2
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
-+|+|+|||.||+++|-.|.. .|+ ++.++|+.
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~----~G~-------~V~viE~~ 54 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQ----HDV-------DVTVYTDR 54 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHH----TTC-------EEEEEESC
T ss_pred CCEEEECCcHHHHHHHHHHHH----CCC-------eEEEEcCC
Confidence 479999999999999998874 675 68888874
No 272
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=60.23 E-value=8.2 Score=33.04 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=26.2
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
..+|+|+|+|..|..+++.+... | ..+++++|+
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~----g------~~~v~~~~r 37 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTS----S------NYSVTVADH 37 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHC----S------SEEEEEEES
T ss_pred cCeEEEECCCHHHHHHHHHHHhC----C------CceEEEEeC
Confidence 46899999999999999987653 6 246888776
No 273
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=60.18 E-value=7.3 Score=42.87 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=28.8
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
.+|||+|||.||+++|.-+.. .+-. .+|.++|+....
T Consensus 37 ~dvvIIG~G~aGl~aA~~l~~----~~~g-----~~V~lie~~~~~ 73 (480)
T 3cgb_A 37 MNYVIIGGDAAGMSAAMQIVR----NDEN-----ANVVTLEKGEIY 73 (480)
T ss_dssp CEEEEECCSHHHHHHHHHHHH----HCTT-----CEEEEECSSSCC
T ss_pred ceEEEECCCHHHHHHHHHHHh----hCcC-----CcEEEEECCCCC
Confidence 489999999999999998874 3211 489999986543
No 274
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=59.91 E-value=5.2 Score=44.78 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=32.2
Q ss_pred cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.|++.||+++|+|..|..+|+.|+.+ | ..+|.++|.+
T Consensus 37 ~L~~~~VlvvG~GGlGs~va~~La~a----G------vg~i~ivD~D 73 (434)
T 1tt5_B 37 LLDTCKVLVIGAGGLGCELLKNLALS----G------FRQIHVIDMD 73 (434)
T ss_dssp HHHTCCEEEECSSTHHHHHHHHHHHT----T------CCCEEEEECC
T ss_pred HhcCCEEEEECcCHHHHHHHHHHHHc----C------CCEEEEEcCC
Confidence 45678999999999999999988876 8 5799999975
No 275
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=59.87 E-value=8.2 Score=43.05 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=28.4
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
..+|||+|||.||+++|-.|.... ..|+ +|.++|+.-
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~-~~G~-------~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRAL-QQQA-------NITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHC-CSSC-------EEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhc-CCCC-------EEEEECCCC
Confidence 468999999999999999887310 0453 799999854
No 276
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=59.84 E-value=8 Score=42.89 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=28.7
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++..|||+|||.+|+++|.-+.. .|+ ++.++|+..
T Consensus 2 ~~~DVvIIGgGi~G~~~A~~La~----~G~-------~V~llE~~~ 36 (501)
T 2qcu_A 2 ETKDLIVIGGGINGAGIAADAAG----RGL-------SVLMLEAQD 36 (501)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHh----CCC-------CEEEEECCC
Confidence 45689999999999999998774 675 689999864
No 277
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=59.80 E-value=8.4 Score=42.14 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=29.8
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++.+|||+|||-+|+++|-.|.. .| .++.++|+...
T Consensus 10 ~~~dvvVIGaG~~GL~aA~~La~----~G-------~~V~vlE~~~~ 45 (453)
T 2bcg_G 10 TDYDVIVLGTGITECILSGLLSV----DG-------KKVLHIDKQDH 45 (453)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHH----TT-------CCEEEECSSSS
T ss_pred ccCCEEEECcCHHHHHHHHHHHH----CC-------CeEEEEeCCCC
Confidence 34689999999999999998874 67 47899998654
No 278
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=59.74 E-value=6.9 Score=39.84 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=27.2
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
..+|+|+|||.||+..|..+.. .| .++.++|++.
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~----~g-------~~v~lie~~~ 38 (335)
T 2zbw_A 5 HTDVLIVGAGPTGLFAGFYVGM----RG-------LSFRFVDPLP 38 (335)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TT-------CCEEEEESSS
T ss_pred cCcEEEECCCHHHHHHHHHHHh----CC-------CCEEEEeCCC
Confidence 4689999999999999988764 35 3688998753
No 279
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=59.67 E-value=6.4 Score=44.46 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=30.1
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
++..|||+|||.||+++|-.+.. .|+ +|+++|+...+
T Consensus 120 ~~~DVvVVG~G~aGl~aA~~la~----~G~-------~V~vlEk~~~~ 156 (566)
T 1qo8_A 120 ETTQVLVVGAGSAGFNASLAAKK----AGA-------NVILVDKAPFS 156 (566)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH----HTC-------CEEEECSSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHH----CCC-------cEEEEeCCCCC
Confidence 45679999999999999987763 674 68999987654
No 280
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=59.57 E-value=7.8 Score=42.30 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=27.2
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
+..|+|+|||.||+++|..+. +.|. ++.++|+
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la----~~G~-------~V~liEk 36 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAA----ALGK-------KVAIAEE 36 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHH----TTTC-------CEEEEES
T ss_pred CCcEEEECcCHHHHHHHHHHH----hCCC-------EEEEEeC
Confidence 468999999999999999877 4674 6899997
No 281
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=59.48 E-value=18 Score=39.61 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=36.1
Q ss_pred HHHHHHHHH-hCC-cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 225 AGLLASLRI-TKT-RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 225 Agll~Al~~-tg~-~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
-++..+++- .|. +|++.+++|+|+|..|..+|+.+.+. |. ++++.|+
T Consensus 156 ~~~~~~~~~~~G~~~L~GktV~V~G~G~VG~~~A~~L~~~----Ga-------kVvv~D~ 204 (364)
T 1leh_A 156 RGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTE----GA-------KLVVTDV 204 (364)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEECCSHHHHHHHHHHHHT----TC-------EEEEECS
T ss_pred HHHHHHHHhhccccCCCcCEEEEECchHHHHHHHHHHHHC----CC-------EEEEEcC
Confidence 355555555 475 89999999999999999999987754 72 4777774
No 282
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=59.39 E-value=7.8 Score=38.72 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=27.6
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
..+|+|+|||.||+..|..+.+. |. ++.++|+.
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~----g~-------~v~lie~~ 47 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARY----ML-------KTLVIGET 47 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT----TC-------CEEEEESS
T ss_pred ccCEEEECccHHHHHHHHHHHHC----CC-------cEEEEecc
Confidence 46899999999999999987653 63 58999987
No 283
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=59.36 E-value=7.4 Score=42.08 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=52.6
Q ss_pred cCCCCCCceEEEeccch-hHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccC----CC
Q psy14377 8 TKTRLSDNTILFQGAGE-ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKH----AP 82 (848)
Q Consensus 8 ~gK~i~d~kiV~~GAGa-A~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~----~~ 82 (848)
.|.+++.-++|++|+|. .|..+|+++. ..|. ++++||+...-...|.+. +-. + ....+ ..
T Consensus 171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L~----~~gA-------tVtv~nR~~~~l~~ra~~-la~-~--~~~~t~~~~t~ 235 (320)
T 1edz_A 171 EGNRLYGKKCIVINRSEIVGRPLAALLA----NDGA-------TVYSVDVNNIQKFTRGES-LKL-N--KHHVEDLGEYS 235 (320)
T ss_dssp TTCTTTTCEEEEECCCTTTHHHHHHHHH----TTSC-------EEEEECSSEEEEEESCCC-SSC-C--CCEEEEEEECC
T ss_pred cCCCCCCCEEEEECCCcchHHHHHHHHH----HCCC-------EEEEEeCchHHHHhHHHH-Hhh-h--ccccccccccc
Confidence 57789999999999996 5999999988 3563 799999987766666552 321 0 00010 00
Q ss_pred CCCHHHHhcccCCCchhh
Q psy14377 83 VKNLADVVKTVKPSILIE 100 (848)
Q Consensus 83 ~~tL~ea~~~s~~~v~~g 100 (848)
..+|+++++. +|+++.
T Consensus 236 ~~~L~e~l~~--ADIVIs 251 (320)
T 1edz_A 236 EDLLKKCSLD--SDVVIT 251 (320)
T ss_dssp HHHHHHHHHH--CSEEEE
T ss_pred HhHHHHHhcc--CCEEEE
Confidence 1468999986 788776
No 284
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=59.30 E-value=9.1 Score=41.51 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=26.7
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
++|||+|+|.||+..|..|.+. +- .-+|.++|++
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~----~~-----~~~VtlI~~~ 36 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNL----MP-----DLKITLISDR 36 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH----CT-----TCEEEEECSS
T ss_pred CcEEEECCCHHHHHHHHHHhcc----Cc-----CCeEEEEcCC
Confidence 4799999999999999988654 31 2378888864
No 285
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=59.02 E-value=11 Score=33.12 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=26.1
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
+.||+++|+|.-|..+++.|.. .| .+++++|+
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~----~g-------~~v~~~d~ 35 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSE----KG-------HDIVLIDI 35 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH----TT-------CEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHh----CC-------CeEEEEEC
Confidence 4689999999999999998874 56 36888886
No 286
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=58.89 E-value=8.1 Score=39.66 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=25.4
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
-|+|+|||.||+..|..|.+. |+ ++.++|++
T Consensus 6 DViIVGaGpaGl~~A~~La~~----G~-------~V~v~Er~ 36 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKY----GL-------KTLMIEKR 36 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHT----TC-------CEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHC----CC-------cEEEEeCC
Confidence 489999999999999887654 85 47888874
No 287
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=58.77 E-value=8.3 Score=38.80 Aligned_cols=33 Identities=21% Similarity=0.139 Sum_probs=26.7
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
..+|+|+|||.||+..|..+.+ .| .++.++|+.
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~----~g-------~~v~lie~~ 39 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGM----RQ-------ASVKIIESL 39 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TT-------CCEEEECSS
T ss_pred cceEEEECCCHHHHHHHHHHHH----CC-------CCEEEEEcC
Confidence 3689999999999999988765 36 368888875
No 288
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=58.69 E-value=8.7 Score=33.98 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=26.6
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
++.-+|+++|+|..|..+++.+.. .|. +++++|+.
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~----~g~-------~v~~~d~~ 38 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHR----MGH-------EVLAVDIN 38 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHH----TTC-------CCEEEESC
T ss_pred CcCCcEEEECCCHHHHHHHHHHHH----CCC-------EEEEEeCC
Confidence 445579999999999999998874 663 57788763
No 289
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=58.68 E-value=9.9 Score=44.13 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=29.0
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
..-+|||+|||.||+++|.-+.. .|. +|.++|+..
T Consensus 390 ~~~~VvIIGgG~AGl~aA~~La~----~G~-------~V~liE~~~ 424 (690)
T 3k30_A 390 SDARVLVVGAGPSGLEAARALGV----RGY-------DVVLAEAGR 424 (690)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHH----HTC-------EEEEECSSS
T ss_pred ccceEEEECCCHHHHHHHHHHHH----CCC-------eEEEEecCC
Confidence 44689999999999999998874 564 699999854
No 290
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=58.65 E-value=3.5 Score=38.16 Aligned_cols=84 Identities=12% Similarity=0.048 Sum_probs=51.2
Q ss_pred CCceEEecCcchhhHHHHHHHHHHHhccccccccc-Cc-----eecCCCCCCchHHHhhhccccchhhccc-cCCCceEE
Q psy14377 706 SDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD-NT-----ILFQGAGEGTASVAIAGLLASLRITKTR-LSDNTILF 778 (848)
Q Consensus 706 ~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d-~g-----~i~~~r~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~ 778 (848)
.+.+++|+|+|.- |..+++.|...+. ++.+.+ +. -+.+..+.|... ..|=.++...++.+ ++++|..+
T Consensus 2 ~~~~vlI~G~G~v--G~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~~~~~~--i~gd~~~~~~l~~a~i~~ad~vi 76 (153)
T 1id1_A 2 RKDHFIVCGHSIL--AINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNADV--IPGDSNDSSVLKKAGIDRCRAIL 76 (153)
T ss_dssp CCSCEEEECCSHH--HHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCEE--EESCTTSHHHHHHHTTTTCSEEE
T ss_pred CCCcEEEECCCHH--HHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhcCCCeE--EEcCCCCHHHHHHcChhhCCEEE
Confidence 4568999999999 9999999988764 333333 21 111111112111 11224555667665 89999999
Q ss_pred eecCCCcchhhhhhhh
Q psy14377 779 QGSGEGTASVAVAGVL 794 (848)
Q Consensus 779 ~~s~~~~~~~~~~~~~ 794 (848)
-..........++-..
T Consensus 77 ~~~~~d~~n~~~~~~a 92 (153)
T 1id1_A 77 ALSDNDADNAFVVLSA 92 (153)
T ss_dssp ECSSCHHHHHHHHHHH
T ss_pred EecCChHHHHHHHHHH
Confidence 8887776665554433
No 291
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=58.58 E-value=9.7 Score=41.86 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=28.3
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.+.+++|+|||.||+++|..+.+ .|. ++.++|+.
T Consensus 28 ~~~dv~IIGaG~aGl~aA~~l~~----~g~-------~v~v~E~~ 61 (397)
T 3hdq_A 28 KGFDYLIVGAGFAGSVLAERLAS----SGQ-------RVLIVDRR 61 (397)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSS
T ss_pred CCCCEEEECccHHHHHHHHHHHH----CCC-------ceEEEecc
Confidence 46789999999999999998874 563 68898875
No 292
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Probab=58.20 E-value=19 Score=39.26 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCC-cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 224 VAGLLASLRITKT-RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 224 lAgll~Al~~tg~-~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.-++-.+++-.|. .|++.+++|+|.|..|..+|+.+... |. ++++.|+
T Consensus 158 ~~~~~~~~~~~G~~~L~GktV~I~G~GnVG~~~A~~l~~~----Ga-------kVvvsD~ 206 (355)
T 1c1d_A 158 FEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEA----GA-------QLLVADT 206 (355)
T ss_dssp HHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHT----TC-------EEEEECS
T ss_pred HHHHHHHHHhcCCCCCCCCEEEEECcCHHHHHHHHHHHHC----CC-------EEEEEeC
Confidence 4467778888898 89999999999999999999987653 73 5778775
No 293
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=58.16 E-value=12 Score=38.91 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=34.4
Q ss_pred cccCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 6 RITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 6 ~i~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+..+..+..-++.|+|+|..|.++++.+. ..|. +|+.+|+.
T Consensus 149 ~~~~~~l~g~~v~IiG~G~iG~~~a~~l~----~~G~-------~V~~~d~~ 189 (300)
T 2rir_A 149 QHTDYTIHGSQVAVLGLGRTGMTIARTFA----ALGA-------NVKVGARS 189 (300)
T ss_dssp HTCSSCSTTSEEEEECCSHHHHHHHHHHH----HTTC-------EEEEEESS
T ss_pred HhcCCCCCCCEEEEEcccHHHHHHHHHHH----HCCC-------EEEEEECC
Confidence 44678899999999999999999999887 3774 68888874
No 294
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=58.11 E-value=7.9 Score=41.46 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=29.2
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+..+|||+|||.||+..|..|.+. |.+ .+|.++|+..
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~----g~~-----~~V~lie~~~ 44 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQN----GFE-----GRVLVIGREP 44 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHT----TCC-----SCEEEEESSS
T ss_pred CCCcEEEECChHHHHHHHHHHHcc----CcC-----CCEEEEecCC
Confidence 357899999999999999987654 642 3688888754
No 295
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=58.01 E-value=9 Score=39.05 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=28.1
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+..|+|+|||.+|+.+|-.|.+. |. ++.++|+..
T Consensus 4 ~~dvvIIG~G~~Gl~~A~~La~~----G~-------~V~vlE~~~ 37 (369)
T 3dme_A 4 DIDCIVIGAGVVGLAIARALAAG----GH-------EVLVAEAAE 37 (369)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT----TC-------CEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHhC----CC-------eEEEEeCCC
Confidence 46899999999999999987653 73 689999873
No 296
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=57.91 E-value=8.4 Score=41.87 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=30.8
Q ss_pred HhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 233 ITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 233 ~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+.++.-+..+|+|+|||.||+..|..|.+. | .++.++++..
T Consensus 4 ~~~~~~~~~~v~IIGaG~aGl~aA~~L~~~----g-------~~v~v~E~~~ 44 (489)
T 2jae_A 4 LIGKVKGSHSVVVLGGGPAGLCSAFELQKA----G-------YKVTVLEART 44 (489)
T ss_dssp CCCCCCSCCEEEEECCSHHHHHHHHHHHHT----T-------CEEEEECSSS
T ss_pred hhhcccCCCCEEEECCCHHHHHHHHHHHHC----C-------CCEEEEeccC
Confidence 444445668999999999999999987653 6 3577777653
No 297
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=57.90 E-value=12 Score=39.51 Aligned_cols=46 Identities=26% Similarity=0.259 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhh------------------hCCcCCCceEEecCcchhhHHHHHHHHHHHhcc
Q psy14377 686 TASVAVAGLLASLRI------------------TKTRLSDNTILFQGAGEGTASVAVAGLLASLRI 733 (848)
Q Consensus 686 TaaV~LAgllaAlr~------------------t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~ 733 (848)
+|=-+++.+|+..|- .+..|.+.++.|+|.|.- |-.+|+.+...+.
T Consensus 103 vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~I--G~~~A~~l~~~G~ 166 (307)
T 1wwk_A 103 VAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRI--GYQVAKIANALGM 166 (307)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECCSHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcccCCceEEEEccCHH--HHHHHHHHHHCCC
Confidence 344467777777662 346799999999999999 9999999988764
No 298
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=57.89 E-value=23 Score=37.99 Aligned_cols=67 Identities=19% Similarity=0.309 Sum_probs=46.8
Q ss_pred cCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccCCCCCCHH
Q psy14377 8 TKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLA 87 (848)
Q Consensus 8 ~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~~~~~tL~ 87 (848)
.+..+.+.+|.|+|.|..|-++|+.+. ..|. +|+.+|+.. ++. . .+.... ...+|+
T Consensus 134 ~~~~l~g~tvGIIGlG~IG~~vA~~l~----~~G~-------~V~~~dr~~-----~~~---~----~~~~~~-~~~~l~ 189 (324)
T 3hg7_A 134 PYQGLKGRTLLILGTGSIGQHIAHTGK----HFGM-------KVLGVSRSG-----RER---A----GFDQVY-QLPALN 189 (324)
T ss_dssp CCCCSTTCEEEEECCSHHHHHHHHHHH----HTTC-------EEEEECSSC-----CCC---T----TCSEEE-CGGGHH
T ss_pred CCcccccceEEEEEECHHHHHHHHHHH----hCCC-------EEEEEcCCh-----HHh---h----hhhccc-ccCCHH
Confidence 467888999999999999999999987 4785 788888754 111 1 111111 235799
Q ss_pred HHhcccCCCchhh
Q psy14377 88 DVVKTVKPSILIE 100 (848)
Q Consensus 88 ea~~~s~~~v~~g 100 (848)
|+++. +|+++=
T Consensus 190 ell~~--aDvV~l 200 (324)
T 3hg7_A 190 KMLAQ--ADVIVS 200 (324)
T ss_dssp HHHHT--CSEEEE
T ss_pred HHHhh--CCEEEE
Confidence 99986 566653
No 299
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=57.81 E-value=9 Score=40.26 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=27.9
Q ss_pred cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+.+..+|+|+|||.||+..|..|.+. |. ++.++|+.-
T Consensus 8 ~m~~~dVvIVGaG~aGl~~A~~L~~~----G~-------~v~viE~~~ 44 (379)
T 3alj_A 8 PGKTRRAEVAGGGFAGLTAAIALKQN----GW-------DVRLHEKSS 44 (379)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHT----TC-------EEEEECSSS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHC----CC-------CEEEEecCC
Confidence 34567999999999999999987654 73 688888753
No 300
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=57.79 E-value=9.5 Score=44.73 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=29.0
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
.-+|||+|||.||+++|..+.. .|. +|.++|+...
T Consensus 389 ~~~VvIIGgGpAGl~aA~~L~~----~G~-------~Vtlie~~~~ 423 (729)
T 1o94_A 389 KDSVLIVGAGPSGSEAARVLME----SGY-------TVHLTDTAEK 423 (729)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH----TTC-------EEEEECSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHH----CCC-------eEEEEeCCCC
Confidence 4689999999999999998874 673 6999998643
No 301
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=57.77 E-value=8.8 Score=40.91 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=26.8
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.+++|+|||.||+++|..+.+ .| .++.++++.
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~----~g-------~~v~v~E~~ 33 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKK----LN-------KKVLVIEKR 33 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGG----GT-------CCEEEECSS
T ss_pred CCEEEECcCHHHHHHHHHHHh----CC-------CcEEEEecC
Confidence 579999999999999998873 46 368898876
No 302
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=57.68 E-value=9.8 Score=42.08 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=29.4
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
..+|||+|+|.||+.+|..+.. .|-. .+|.|+|+...
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~----~g~~-----~~V~vie~~~~ 42 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLK----HHSR-----AHVDIYEKQLV 42 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH----HCSS-----CEEEEECSSSS
T ss_pred CceEEEECcCHHHHHHHHHHHh----cCCC-----CCEEEEeCCCc
Confidence 3589999999999999998874 5622 48999998643
No 303
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=57.51 E-value=8.9 Score=43.39 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=27.5
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
.+.+|||+|||.||+++|.-+.. .|. ++.++|+
T Consensus 106 ~~~dvvVIG~GpAGl~aA~~l~~----~g~-------~v~liE~ 138 (598)
T 2x8g_A 106 YDYDLIVIGGGSGGLAAGKEAAK----YGA-------KTAVLDY 138 (598)
T ss_dssp SSEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECC
T ss_pred ccccEEEECCCccHHHHHHHHHh----CCC-------eEEEEec
Confidence 45789999999999999998874 674 6888886
No 304
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=57.19 E-value=8.8 Score=40.84 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=28.3
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
.+|||+|||.||+..|..|.+.. ..| .+|.++|+.--
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~-~~g-------~~V~vie~~~~ 38 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLV-GSK-------ADVKVINKSRF 38 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHH-GGG-------SEEEEEESSSE
T ss_pred CeEEEECCCHHHHHHHHHHHhhC-CCC-------CeEEEEeCCCC
Confidence 47999999999999999887621 123 47899988653
No 305
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=56.84 E-value=9.1 Score=40.90 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=29.8
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 286 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi 286 (848)
+..|||+|||.+|+.+|-.|.+. |. +++.++|+.-..
T Consensus 6 ~~dVvIIGgG~aGlsaA~~La~~----G~------~~V~vlE~~~~~ 42 (438)
T 3dje_A 6 SSSLLIVGAGTWGTSTALHLARR----GY------TNVTVLDPYPVP 42 (438)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHT----TC------CCEEEEESSCSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHc----CC------CcEEEEeCCCCC
Confidence 46799999999999999887654 73 379999987653
No 306
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=56.82 E-value=6.1 Score=46.50 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=33.2
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+|++.||+|+|+|..|..+|+.|+.+ | ..+|.++|.+
T Consensus 13 ~kL~~s~VlVVGaGGLGsevak~La~a----G------VG~ItlvD~D 50 (640)
T 1y8q_B 13 EAVAGGRVLVVGAGGIGCELLKNLVLT----G------FSHIDLIDLD 50 (640)
T ss_dssp HHHHHCEEEEECCSHHHHHHHHHHHHH----T------CCEEEEEECC
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHc----C------CCeEEEecCC
Confidence 346779999999999999999998876 9 5699999976
No 307
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=56.72 E-value=11 Score=40.65 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=29.0
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
..+|||+|||.||+..|..+.+. |. ..+|.++|+..
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~----g~-----~~~V~lie~~~ 42 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQA----GY-----QGLITVVGDEA 42 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHH----TC-----CSCEEEEESSC
T ss_pred CCcEEEECChHHHHHHHHHHHcc----CC-----CCeEEEEECCC
Confidence 46899999999999999988765 63 23699998854
No 308
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=56.60 E-value=11 Score=43.62 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=28.7
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
..+|||+|||.||+++|.-+. +.|. +|.++|+...
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~----~~g~-------~V~lie~~~~ 407 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAA----ARGH-------QVTLFDAHSE 407 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----TTTC-------EEEEEESSSS
T ss_pred CCeEEEECCCHHHHHHHHHHH----hCCC-------eEEEEeCCCC
Confidence 468999999999999999887 3563 7999998643
No 309
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=56.36 E-value=8.6 Score=42.62 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=27.0
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..+||+|||.||+++|.-+. +.|. ++.++|+.
T Consensus 9 ~DvvVIGgG~aGl~aA~~la----~~G~-------~V~liE~~ 40 (492)
T 3ic9_A 9 VDVAIIGTGTAGMGAYRAAK----KHTD-------KVVLIEGG 40 (492)
T ss_dssp EEEEEECCSHHHHHHHHHHH----TTCS-------CEEEEESS
T ss_pred CCEEEECCCHHHHHHHHHHH----hCCC-------cEEEEeCC
Confidence 68999999999999999777 4674 68899874
No 310
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=56.03 E-value=7.5 Score=39.23 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=27.0
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
..+|+|+|||.||+..|..+.+. |. ++.++|+.
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~~----g~-------~v~vie~~ 54 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLARA----EI-------KPILYEGM 54 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT----TC-------CCEEECCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHC----CC-------CEEEEecC
Confidence 47899999999999999987754 63 58888874
No 311
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=56.03 E-value=11 Score=38.70 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=29.5
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
++++-+++++|+|..|...+++|+. .|. +|.++|.
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~----~GA-------~VtVvap 62 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQ----EGA-------AITVVAP 62 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGG----GCC-------CEEEECS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHH----CCC-------EEEEECC
Confidence 5677899999999999999999983 674 6888876
No 312
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=56.00 E-value=10 Score=37.83 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=26.0
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEE-EcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWM-VDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~-vD~k 283 (848)
..+++|+|||.||+..|..+.+. |. ++.+ +|+.
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~~----g~-------~v~li~e~~ 37 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATRG----GL-------KNVVMFEKG 37 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHH----TC-------SCEEEECSS
T ss_pred CceEEEECCCHHHHHHHHHHHHC----CC-------CeEEEEeCC
Confidence 36899999999999999987764 63 4566 8873
No 313
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=55.97 E-value=66 Score=35.10 Aligned_cols=99 Identities=18% Similarity=0.144 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHhhCCceeeeeecCCCcchHHHHHHHcccC-ceeccC------C---chHHHHHHHHHHHHHhh-hCC
Q psy14377 635 DDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRY-CVFNDD------I---QGTASVAVAGLLASLRI-TKT 703 (848)
Q Consensus 635 ~~fvdefv~av~~~fGp~~~IqfEDf~~~naf~lL~ryr~~~-~~FnDD------i---QGTaaV~LAgllaAlr~-t~~ 703 (848)
++++..|.+++.+..|+ .|-=+|++..- +.+...-+++ ++---- + .-||-=+.-++..+++- .|.
T Consensus 93 ~~~~r~~~~~~~~l~g~--~i~A~D~Gt~~--~~m~~l~~~~~~~tGK~~~~ggs~~~~~aTg~GV~~~~~~~~~~~~G~ 168 (364)
T 1leh_A 93 EDMFRALGRFIQGLNGR--YITAEDVGTTV--DDMDLIHQETDYVTGISPAFGSSGNPSPVTAYGVYRGMKAAAKEAFGS 168 (364)
T ss_dssp HHHHHHHHHHHHTTTTS--EEBCBCTTCCH--HHHHHHHTTCSCBCSCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhcCc--eEEcccCCCCH--HHHHHHHHhcchhcccccccCCCCCcccchhhHHHHHHHHHHHhhccc
Confidence 55667778888887775 56788887532 3455555544 221111 1 23444444455555555 375
Q ss_pred -cCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 704 -RLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 704 -~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
+|++.+++|.|+|.- |..+|+.+...+.+ +.++|
T Consensus 169 ~~L~GktV~V~G~G~V--G~~~A~~L~~~Gak-Vvv~D 203 (364)
T 1leh_A 169 DSLEGLAVSVQGLGNV--AKALCKKLNTEGAK-LVVTD 203 (364)
T ss_dssp CCCTTCEEEEECCSHH--HHHHHHHHHHTTCE-EEEEC
T ss_pred cCCCcCEEEEECchHH--HHHHHHHHHHCCCE-EEEEc
Confidence 899999999999999 99999999999874 55666
No 314
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=55.84 E-value=11 Score=41.03 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=29.7
Q ss_pred cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
++++.+++|+|+|..|..++..+... | .++|+.+|+
T Consensus 164 ~l~g~~VlIiGaG~iG~~~a~~l~~~----G------~~~V~v~~r 199 (404)
T 1gpj_A 164 SLHDKTVLVVGAGEMGKTVAKSLVDR----G------VRAVLVANR 199 (404)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHH----C------CSEEEEECS
T ss_pred cccCCEEEEEChHHHHHHHHHHHHHC----C------CCEEEEEeC
Confidence 57889999999999999999987754 7 357888765
No 315
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=55.75 E-value=9.7 Score=42.17 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=26.5
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVD 55 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~D 55 (848)
+.+|||+|||.||+++|.-+.+ ..|. ++.++|
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~---~~G~-------~V~liE 34 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAAS---LHKK-------RVAVID 34 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHH---HHCC-------CEEEEE
T ss_pred cccEEEECCCHHHHHHHHHHHH---HcCC-------EEEEEe
Confidence 4689999999999999998763 0564 689999
No 316
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=55.52 E-value=11 Score=38.01 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=26.8
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+++|+|+|.||+..|..+.+. |. +++.++|++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~----g~------~~v~lie~~ 34 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRG----GV------KNAVLFEKG 34 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT----TC------SSEEEECSS
T ss_pred ceEEEECccHHHHHHHHHHHHC----CC------CcEEEEcCC
Confidence 4799999999999999987653 63 278999985
No 317
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=55.51 E-value=11 Score=39.32 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=29.3
Q ss_pred CceEEEeccchHHHHHHHHHHH-HHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVM-AMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~-~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+..|+|+|||.+|+.+|-.|.+ . | ..++.++|+..
T Consensus 21 ~~dVvIIG~G~~Gl~~A~~La~~~----G------~~~V~vlE~~~ 56 (405)
T 2gag_B 21 SYDAIIVGGGGHGLATAYFLAKNH----G------ITNVAVLEKGW 56 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHH----C------CCCEEEECSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHhc----C------CCcEEEEeCCC
Confidence 4689999999999999998876 4 6 24799999876
No 318
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=55.48 E-value=10 Score=40.38 Aligned_cols=35 Identities=31% Similarity=0.348 Sum_probs=28.1
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+.+|+|+|||.||+..|..|... |+ +++.++|+..
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~----G~------~~v~v~E~~~ 38 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQA----GI------GKVTLLESSS 38 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT----TC------SEEEEEESSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhC----CC------CeEEEEECCC
Confidence 46899999999999999987654 73 3488998864
No 319
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=55.40 E-value=11 Score=35.17 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=26.5
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+++|+|+|.+|+..|..+.+. | .++.++|+.
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~----g-------~~v~lie~~ 33 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARA----G-------LKVLVLDGG 33 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT----T-------CCEEEEECS
T ss_pred CeEEEECCCHHHHHHHHHHHHC----C-------CcEEEEeCC
Confidence 4799999999999999987654 6 468888875
No 320
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=55.15 E-value=7.9 Score=44.55 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=28.8
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHh-cCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQK-EGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~-~G~~~e~~~~ni~m~DskG 58 (848)
++.+|||+|||.||+++|-.|. + .|+ ++.++|+..
T Consensus 31 ~~~dVlIVGaGpaGL~~A~~La----~~~G~-------~V~viEr~~ 66 (639)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLA----AFPDI-------RTCIVEQKE 66 (639)
T ss_dssp SEEEEEEECCSHHHHHHHHHHT----TCTTS-------CEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHH----HhCCC-------CEEEEeCCC
Confidence 4578999999999999999876 5 675 588888764
No 321
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=55.14 E-value=9.5 Score=39.59 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=28.7
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
+..|+|+|||.+|+.+|..|.+. | .++.++|+..+
T Consensus 17 ~~dvvIIGgG~~Gl~~A~~La~~----G-------~~V~llE~~~~ 51 (382)
T 1ryi_A 17 HYEAVVIGGGIIGSAIAYYLAKE----N-------KNTALFESGTM 51 (382)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT----T-------CCEEEECSSST
T ss_pred CCCEEEECcCHHHHHHHHHHHhC----C-------CcEEEEeCCCC
Confidence 36899999999999999987754 7 36999998643
No 322
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=55.05 E-value=8.2 Score=39.29 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=27.4
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
..+++|+|||.||+..|..+.+. | .++.++|+.
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~----g-------~~v~lie~~ 40 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRA----Q-------LSTLILEKG 40 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT----T-------CCEEEEESS
T ss_pred cCCEEEECCCHHHHHHHHHHHHc----C-------CcEEEEeCC
Confidence 46899999999999999887653 6 368899986
No 323
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=55.00 E-value=10 Score=39.46 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=28.3
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+..|+|+|||.+|+.+|..|.+. |. ++.++|+..
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~~----G~-------~V~lle~~~ 38 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAKR----GE-------EVTVIEKRF 38 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHT----TC-------CEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHC----CC-------eEEEEeCCC
Confidence 46799999999999999987754 73 599999874
No 324
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Probab=54.98 E-value=14 Score=41.70 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=21.6
Q ss_pred cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
++++.+++|.|||.+|.++|..+.. .| . +++++++
T Consensus 361 ~l~~k~vlV~GaGGig~aia~~L~~----~G------~-~V~i~~R 395 (523)
T 2o7s_A 361 PLASKTVVVIGAGGAGKALAYGAKE----KG------A-KVVIANR 395 (523)
T ss_dssp -----CEEEECCSHHHHHHHHHHHH----HC------C--CEEEES
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHH----CC------C-EEEEEEC
Confidence 5778899999999777777776654 47 2 5777665
No 325
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=54.46 E-value=8.9 Score=41.86 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=26.4
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
||||+|+|.||+..|..+.+. |. .-+|.++|+.
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~----g~-----~~~V~lie~~ 34 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRL----DK-----ESDIIIFEKD 34 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHH----CS-----SSCEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhC----CC-----CCcEEEEeCC
Confidence 799999999999999887654 62 2368888875
No 326
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=54.45 E-value=11 Score=40.49 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=29.5
Q ss_pred CCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 235 KTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 235 g~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+...++..|+|+|||.+|+.+|..|.+. | ..++.++|+
T Consensus 18 ~~~m~~~dVvIIGgGiaGls~A~~La~~----G------~~~V~vlE~ 55 (448)
T 3axb_A 18 GSHMPRFDYVVVGAGVVGLAAAYYLKVW----S------GGSVLVVDA 55 (448)
T ss_dssp ---CCEEEEEEECCSHHHHHHHHHHHHH----H------CSCEEEEES
T ss_pred cccCCcCCEEEECcCHHHHHHHHHHHhC----C------CCcEEEEcc
Confidence 3345667899999999999999988765 5 247999998
No 327
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=54.38 E-value=11 Score=42.12 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=26.6
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
+..+|||+|||.||+++|..+.. .|. ++.++|.
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~----~G~-------~v~lie~ 243 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSAR----KGI-------RTGLMGE 243 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECS
T ss_pred CcccEEEECCcHHHHHHHHHHHh----CCC-------eEEEEEC
Confidence 35689999999999999998773 675 5677775
No 328
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=54.27 E-value=13 Score=32.85 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=25.0
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+.+|+|+|+|..|..+|+.+... | .+++++|+
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~----g-------~~v~~~d~ 35 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEK----G-------HDIVLIDI 35 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT----T-------CEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHhC----C-------CeEEEEEC
Confidence 35899999999999999887653 5 35888876
No 329
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=54.17 E-value=18 Score=39.78 Aligned_cols=52 Identities=23% Similarity=0.260 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 686 TASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 686 TaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
+|=-+++.+++..|-.+..|.+.++.|+|.|.- |-.+|+.+...+. ++..+|
T Consensus 95 vAE~~l~~lL~l~r~~~~~l~g~tvGIIGlG~I--G~~vA~~l~~~G~-~V~~~d 146 (380)
T 2o4c_A 95 VVDYVLGCLLAMAEVRGADLAERTYGVVGAGQV--GGRLVEVLRGLGW-KVLVCD 146 (380)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEEECCSHH--HHHHHHHHHHTTC-EEEEEC
T ss_pred HHHHHHHHHHHHHhhhhcccCCCEEEEEeCCHH--HHHHHHHHHHCCC-EEEEEc
Confidence 444589999999998899999999999999999 9999999988765 444444
No 330
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=54.14 E-value=10 Score=38.55 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=27.1
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+.+++|+|+|.||+..|..+.+. | .++.++|+.
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~~----g-------~~v~lie~~ 48 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAARS----G-------FSVAILDKA 48 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT----T-------CCEEEEESS
T ss_pred CCcEEEECcCHHHHHHHHHHHhC----C-------CcEEEEeCC
Confidence 46899999999999999987653 6 358899874
No 331
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=54.06 E-value=15 Score=38.20 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=33.3
Q ss_pred HHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 231 LRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 231 l~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
++..+..|++.+++|+|+|..|..+|..+... |. +++.+|+
T Consensus 148 ~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~----G~-------~V~~~d~ 188 (300)
T 2rir_A 148 IQHTDYTIHGSQVAVLGLGRTGMTIARTFAAL----GA-------NVKVGAR 188 (300)
T ss_dssp HHTCSSCSTTSEEEEECCSHHHHHHHHHHHHT----TC-------EEEEEES
T ss_pred HHhcCCCCCCCEEEEEcccHHHHHHHHHHHHC----CC-------EEEEEEC
Confidence 44568899999999999999999999987653 62 5777775
No 332
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=54.05 E-value=12 Score=33.74 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=26.1
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+..+|+|+|+|..|..+|+.+... | .+++++|+
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~----g-------~~V~~id~ 37 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAA----G-------KKVLAVDK 37 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHT----T-------CCEEEEES
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC----C-------CeEEEEEC
Confidence 346899999999999999987754 6 35888876
No 333
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=54.03 E-value=11 Score=39.00 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=27.0
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+.+|+|+|||.||+..|..+.. .| .++.++|+.
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~----~g-------~~v~lie~~ 46 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGM----NN-------ISCRIIESM 46 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH----TT-------CCEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHh----CC-------CCEEEEecC
Confidence 5789999999999999987654 36 368888875
No 334
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=53.98 E-value=13 Score=42.96 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=28.4
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
..|||+|||.||+++|..|. +.|. +|.++|+..-
T Consensus 273 ~DVvIIGgGiaGlsaA~~La----~~G~-------~V~vlEk~~~ 306 (676)
T 3ps9_A 273 REAAIIGGGIASALLSLALL----RRGW-------QVTLYCADEA 306 (676)
T ss_dssp CEEEEECCSHHHHHHHHHHH----TTTC-------EEEEEESSSS
T ss_pred CCEEEECCCHHHHHHHHHHH----HCCC-------eEEEEeCCCc
Confidence 68999999999999999877 3674 7999998543
No 335
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=53.97 E-value=8.9 Score=39.51 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=27.4
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+.-+|||+|||.+|+++|.-|. .|. +|.++|+..
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La-----~G~-------~V~vlE~~~ 41 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLS-----AHG-------RVVVLEREA 41 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHT-----TTS-------CEEEECSSS
T ss_pred CcCCEEEECCcHHHHHHHHHHh-----CCC-------CEEEEECCC
Confidence 3567999999999999998765 264 689998864
No 336
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=53.78 E-value=9.4 Score=39.48 Aligned_cols=38 Identities=18% Similarity=-0.012 Sum_probs=27.0
Q ss_pred eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 16 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 16 kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
.|||+|||.+|+++|-.|.+ .|.+. -...+|.++|+.-
T Consensus 2 dVvIIGgGi~Gls~A~~La~----~G~~~-~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHE----RYHSV-LQPLDIKVYADRF 39 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHH----HHTTT-SSSCEEEEEESSC
T ss_pred cEEEECCCHHHHHHHHHHHH----hcccc-CCCceEEEEECCC
Confidence 68999999999999987774 45110 0013799999764
No 337
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=53.76 E-value=9.1 Score=44.52 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=28.9
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHH-hcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQ-KEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~-~~G~~~e~~~~ni~m~DskG 58 (848)
++..|+|+|||.||+++|-.|..... ..|+ ++.++|+..
T Consensus 7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi-------~v~viE~~~ 46 (665)
T 1pn0_A 7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDL-------KVRIIDKRS 46 (665)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHSTTC-------CEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHhccccccCCC-------CEEEEeCCC
Confidence 35789999999999999998762000 0686 588889764
No 338
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=53.74 E-value=12 Score=40.61 Aligned_cols=36 Identities=14% Similarity=0.300 Sum_probs=28.3
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+.+|+|+|||.||+++|..|.+ .|. .++.++++..-
T Consensus 4 ~~~~~iiG~G~~g~~~a~~l~~----~g~------~~v~~~e~~~~ 39 (472)
T 1b37_A 4 GPRVIVVGAGMSGISAAKRLSE----AGI------TDLLILEATDH 39 (472)
T ss_dssp -CCEEEECCBHHHHHHHHHHHH----TTC------CCEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHh----cCC------CceEEEeCCCC
Confidence 4689999999999999998874 564 26888887643
No 339
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=53.73 E-value=8.2 Score=40.53 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=51.0
Q ss_pred CceeccCCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCch-H
Q psy14377 676 YCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTA-S 754 (848)
Q Consensus 676 ~~~FnDDiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~-~ 754 (848)
+.=+|-|- .|++.+++-.+ +.+++|+|||.+ |-+++..|...+ .++.+.+ |+..-+ .
T Consensus 99 l~G~NTD~--------~Gf~~~L~~~~----~k~vlvlGaGGa--araia~~L~~~G-~~v~V~n-------Rt~~ka~~ 156 (269)
T 3phh_A 99 LVGYNTDA--------LGFYLSLKQKN----YQNALILGAGGS--AKALACELKKQG-LQVSVLN-------RSSRGLDF 156 (269)
T ss_dssp EEEECCHH--------HHHHHHCC-------CCEEEEECCSHH--HHHHHHHHHHTT-CEEEEEC-------SSCTTHHH
T ss_pred EEEecChH--------HHHHHHHHHcC----CCEEEEECCCHH--HHHHHHHHHHCC-CEEEEEe-------CCHHHHHH
Confidence 45566662 34566665433 789999999999 999999999988 6655443 222222 2
Q ss_pred HHhhhccccchhhccccCCCceEEeecCCCc
Q psy14377 755 VAIAGLLASLRITKTRLSDNTILFQGSGEGT 785 (848)
Q Consensus 755 ~~~~~~~~~~r~~~~~~~~~~~~~~~s~~~~ 785 (848)
....|.. ....++ +.++||.+....-|.
T Consensus 157 la~~~~~--~~~~~~-l~~~DiVInaTp~Gm 184 (269)
T 3phh_A 157 FQRLGCD--CFMEPP-KSAFDLIINATSASL 184 (269)
T ss_dssp HHHHTCE--EESSCC-SSCCSEEEECCTTCC
T ss_pred HHHCCCe--EecHHH-hccCCEEEEcccCCC
Confidence 2233321 112233 348999997665554
No 340
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=53.21 E-value=11 Score=38.99 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=28.6
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 286 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi 286 (848)
..|+|+|||.+|+.+|-.|.+. | .++.++|+....
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~----G-------~~V~vie~~~~~ 38 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQ----G-------VKTLLVDAFDPP 38 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT----T-------CCEEEECSSCSS
T ss_pred CCEEEECCCHHHHHHHHHHHhC----C-------CeEEEEeCCCCC
Confidence 5799999999999999987754 7 369999987543
No 341
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=53.05 E-value=3.8 Score=37.63 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=24.4
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
..+++|+|+|..|..++..+.. .| .+ ++++|+
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~----~g------~~-v~v~~r 52 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSY----PQ------YK-VTVAGR 52 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCT----TT------CE-EEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHh----CC------CE-EEEEcC
Confidence 7899999999999988876543 35 33 777665
No 342
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}
Probab=53.03 E-value=16 Score=39.09 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=26.2
Q ss_pred CcCCCceEEecCcchhhHHHHHHHHHHHhcc
Q psy14377 703 TRLSDNTILFQGAGEGTASVAVAGLLASLRI 733 (848)
Q Consensus 703 ~~l~d~riv~~GAG~A~~g~giA~ll~~~~~ 733 (848)
..|.+.++.|+|.|.- |..+|+.+...+.
T Consensus 142 ~~l~g~~vgIIG~G~i--G~~vA~~l~~~G~ 170 (333)
T 2d0i_A 142 ESLYGKKVGILGMGAI--GKAIARRLIPFGV 170 (333)
T ss_dssp CCSTTCEEEEECCSHH--HHHHHHHHGGGTC
T ss_pred CCCCcCEEEEEccCHH--HHHHHHHHHHCCC
Confidence 6899999999999999 9999999987664
No 343
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=53.00 E-value=12 Score=40.30 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=27.6
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
.+|||+|||.||+..|..|.+. |. ..+|.++|+..
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~----g~-----~~~V~li~~~~ 37 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAE----GF-----EGRISLIGDEP 37 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT----TC-----CSEEEEEECSS
T ss_pred CCEEEEcccHHHHHHHHHHHcc----Cc-----CCeEEEEECCC
Confidence 4899999999999999987654 63 24688888753
No 344
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=52.91 E-value=13 Score=43.21 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=28.2
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+..|||+|||.||+++|-.|. +.|. +|.++|+..
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La----~~G~-------~V~vlEk~~ 297 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQ----RRGA-------VVTLYCADA 297 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHH----TTTC-------CEEEEESSS
T ss_pred CCCEEEECCcHHHHHHHHHHH----HCCC-------cEEEEeCCC
Confidence 468999999999999999777 4674 689999854
No 345
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=52.69 E-value=13 Score=39.54 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=27.1
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
.+|+|+|||.+|+..|..|.++ | .++.++|+..
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~~----G-------~~V~vlE~~~ 34 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTNA----G-------KKVLLLEGGE 34 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHHT----T-------CCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHHc----C-------CeEEEEecCC
Confidence 3699999999999999987764 7 3688888754
No 346
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=52.66 E-value=13 Score=41.43 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=28.3
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.+..++|+|||.||+++|..+.+ .|. ++.++|++
T Consensus 31 ~~~DVvVIGgGpaGl~aA~~la~----~G~-------~V~liEk~ 64 (519)
T 3qfa_A 31 YDYDLIIIGGGSGGLAAAKEAAQ----YGK-------KVMVLDFV 64 (519)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHh----CCC-------eEEEEecc
Confidence 45789999999999999998774 674 68898874
No 347
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=52.49 E-value=13 Score=40.88 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=29.5
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
++.-||.|+|.|-+|+++|++|.. .|. ++..+|.+
T Consensus 7 ~~~k~v~viG~G~sG~s~A~~l~~----~G~-------~V~~~D~~ 41 (451)
T 3lk7_A 7 FENKKVLVLGLARSGEAAARLLAK----LGA-------IVTVNDGK 41 (451)
T ss_dssp TTTCEEEEECCTTTHHHHHHHHHH----TTC-------EEEEEESS
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHh----CCC-------EEEEEeCC
Confidence 445689999999999999999984 784 78888874
No 348
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=52.38 E-value=11 Score=41.87 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=28.6
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+..|||+|+|.||+++|-.+.. .|. +++++++...
T Consensus 41 ~~DVvVVGaG~AGl~AA~~aa~----~G~-------~V~vlEk~~~ 75 (510)
T 4at0_A 41 EADVVVAGYGIAGVAASIEAAR----AGA-------DVLVLERTSG 75 (510)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHH----CCC-------cEEEEeCCCC
Confidence 4679999999999999987773 674 6889887654
No 349
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=52.14 E-value=12 Score=40.82 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=27.4
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+.+++|+|||.||+..|..+.+. | .++.++|+.
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~----g-------~~V~lie~~ 36 (467)
T 1zk7_A 4 PVQVAVIGSGGAAMAAALKAVEQ----G-------AQVTLIERG 36 (467)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT----T-------CEEEEEESS
T ss_pred cCCEEEECCCHHHHHHHHHHHHC----C-------CEEEEEeCC
Confidence 46899999999999999876653 6 379999975
No 350
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=52.10 E-value=12 Score=42.82 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=27.9
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+..|||+|||.+|+++|-.|.. .|+ ++.++|+.-.
T Consensus 49 ~~DVvIVGaG~aGL~~A~~La~----~G~-------~V~VlEr~~~ 83 (570)
T 3fmw_A 49 TTDVVVVGGGPVGLMLAGELRA----GGV-------GALVLEKLVE 83 (570)
T ss_dssp --CEEEECCSHHHHHHHHHHHH----TTC-------CEEEEBSCSS
T ss_pred CCCEEEECcCHHHHHHHHHHHH----CCC-------CEEEEcCCCC
Confidence 4689999999999999998874 686 5888897644
No 351
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=52.08 E-value=6.8 Score=46.09 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=34.3
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++|.+.||+++|||+.|..+++.|.. .|+ .+|.++|..=+
T Consensus 13 ~kL~~s~VlVVGaGGLGsevak~La~----aGV------G~ItlvD~D~V 52 (640)
T 1y8q_B 13 EAVAGGRVLVVGAGGIGCELLKNLVL----TGF------SHIDLIDLDTI 52 (640)
T ss_dssp HHHHHCEEEEECCSHHHHHHHHHHHH----HTC------CEEEEEECCBC
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHH----cCC------CeEEEecCCEE
Confidence 46788999999999999999998884 787 49999998643
No 352
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=51.97 E-value=13 Score=37.71 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=26.7
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
..|+|+|||.+|+.+|..|.+. |+ ++.++|+.
T Consensus 3 ~dV~IIGaG~~Gl~~A~~L~~~----G~-------~V~vlE~~ 34 (336)
T 1yvv_A 3 VPIAIIGTGIAGLSAAQALTAA----GH-------QVHLFDKS 34 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT----TC-------CEEEECSS
T ss_pred ceEEEECCcHHHHHHHHHHHHC----CC-------cEEEEECC
Confidence 4799999999999999987754 74 58888875
No 353
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=51.94 E-value=14 Score=41.02 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=28.1
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+..+|+|+|+|.||+..|..|... |. ++.++|+.
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~----G~-------~V~v~e~~ 154 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAK----GY-------EVHVYDRY 154 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHH----TC-------CEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC----CC-------eEEEEecc
Confidence 457899999999999999998765 73 58888874
No 354
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=51.92 E-value=17 Score=31.06 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=27.4
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
..||+++|||..|.++++.+.. .|. .+++++|+.
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~----~g~------~~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKT----SSN------YSVTVADHD 38 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH----CSS------EEEEEEESC
T ss_pred cCeEEEECCCHHHHHHHHHHHh----CCC------ceEEEEeCC
Confidence 4589999999999999998884 562 368888873
No 355
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=51.80 E-value=13 Score=40.88 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=28.3
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+|+|+|||.||+..|..+.+.. ..|.+ ..++.++|+.
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~-~~G~~----~~~V~v~E~~ 40 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQ-EKGAE----IPELVCFEKQ 40 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHH-HTTCC----CCEEEEECSS
T ss_pred CcEEEECccHHHHHHHHHHHhhh-hcCCC----CCcEEEEEcC
Confidence 58999999999999999887621 14642 1239999986
No 356
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=51.66 E-value=10 Score=43.29 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=28.6
Q ss_pred ceEEEeccchhHHHHHHHHHHHHHhc--CCCccccCCeEEEEcCCCc
Q psy14377 15 NTILFQGAGEASLGIADLCVMAMQKE--GTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 15 ~kiV~~GAGaA~ia~a~L~~~am~~~--G~~~e~~~~ni~m~DskGv 59 (848)
..|||+|||.||+++|-.|.+..... |+ ++.++|+..-
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~-------~V~vlEk~~~ 75 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDL-------RVCLVEKAAH 75 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCC-------CEEEECSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCC-------cEEEEeCCCC
Confidence 57999999999999999887522122 64 6888887643
No 357
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=51.33 E-value=12 Score=41.17 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=27.5
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+..+||+|||.||+++|.-+.+ .|. ++.++|++
T Consensus 6 ~~DvvVIG~G~aGl~aA~~la~----~G~-------~V~liEk~ 38 (488)
T 3dgz_A 6 SFDLLVIGGGSGGLACAKEAAQ----LGK-------KVAVADYV 38 (488)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECCC
T ss_pred cCCEEEECCCHHHHHHHHHHHh----CCC-------eEEEEEec
Confidence 4689999999999999997773 674 68999863
No 358
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=51.19 E-value=12 Score=38.76 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=28.7
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 286 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi 286 (848)
..|+|+|||.+|+.+|-.|.+. |. ++.++|+....
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~~----G~-------~V~vle~~~~~ 37 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATRA----GL-------NVLMTDAHMPP 37 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHHT----TC-------CEEEECSSCSS
T ss_pred CCEEEECCCHHHHHHHHHHHHC----CC-------eEEEEecCCCC
Confidence 5799999999999999987754 73 69999987554
No 359
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=50.97 E-value=13 Score=42.54 Aligned_cols=40 Identities=18% Similarity=0.431 Sum_probs=25.8
Q ss_pred cccCCCCCCc----eEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 6 RITKTRLSDN----TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 6 ~i~gK~i~d~----kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
++++.+.+|+ -+||+|+|+||+.+|.-.. ++|. ++.|+++
T Consensus 30 ~~~~~~~~~~~ydYDviVIG~GpaG~~aA~~aa----~~G~-------kValIE~ 73 (542)
T 4b1b_A 30 ELTKNKVEEHTYDYDYVVIGGGPGGMASAKEAA----AHGA-------RVLLFDY 73 (542)
T ss_dssp ---------CCSSEEEEEECCSHHHHHHHHHHH----TTTC-------CEEEECC
T ss_pred hhccccCcCCCCCCCEEEECCCHHHHHHHHHHH----HCCC-------eEEEEec
Confidence 4566677776 4899999999999998766 4784 7888885
No 360
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=50.86 E-value=13 Score=39.32 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=28.3
Q ss_pred CCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 238 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 238 l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
-+..+|+|+|||.||+..|-.|.+. |. ++.++|+.-
T Consensus 21 ~~~~dV~IVGaG~aGl~~A~~La~~----G~-------~V~v~E~~~ 56 (407)
T 3rp8_A 21 QGHMKAIVIGAGIGGLSAAVALKQS----GI-------DCDVYEAVK 56 (407)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHT----TC-------EEEEEESSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC----CC-------CEEEEeCCC
Confidence 4457899999999999999987654 73 588888864
No 361
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=50.75 E-value=12 Score=39.29 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=27.7
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+.+|+|+|||.||+..|..|.+. |. ++.++|+.-
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~----G~-------~V~viE~~~ 39 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQ----GH-------RVVVVEQAR 39 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT----TC-------CEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhC----CC-------cEEEEeCCC
Confidence 46899999999999999987654 74 588888763
No 362
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=50.74 E-value=15 Score=38.16 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=28.2
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+..|+|+|||.+|+.+|-.|.+ .| .++.++|+..
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~----~G-------~~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILAR----KG-------YSVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHH----TT-------CEEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHh----CC-------CEEEEEeccC
Confidence 4689999999999999998754 36 3699999865
No 363
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=50.67 E-value=13 Score=40.70 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=27.5
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
.+..+||+|||.||+++|.-+.. .|. ++.++|+
T Consensus 8 ~~~DvvVIGgG~aGl~aA~~la~----~G~-------~V~liEk 40 (483)
T 3dgh_A 8 YDYDLIVIGGGSAGLACAKEAVL----NGA-------RVACLDF 40 (483)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECC
T ss_pred CCCCEEEECcCHHHHHHHHHHHH----CCC-------EEEEEEe
Confidence 46789999999999999997773 674 6889884
No 364
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=50.67 E-value=22 Score=38.24 Aligned_cols=35 Identities=14% Similarity=0.363 Sum_probs=28.5
Q ss_pred cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.++..+++|+|+|..|..+|+.+... | . +++.+|+
T Consensus 163 ~l~~~~V~ViGaG~iG~~~a~~l~~~----G------a-~V~~~d~ 197 (369)
T 2eez_A 163 GVAPASVVILGGGTVGTNAAKIALGM----G------A-QVTILDV 197 (369)
T ss_dssp BBCCCEEEEECCSHHHHHHHHHHHHT----T------C-EEEEEES
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhC----C------C-EEEEEEC
Confidence 47789999999999999999987654 7 2 5887775
No 365
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=50.42 E-value=13 Score=39.49 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=28.9
Q ss_pred CCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 238 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 238 l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
.++.+|+|+|||.||+..|..|.+ .|. ++.++|+..
T Consensus 24 ~~~~dV~IVGaG~aGl~~A~~L~~----~G~-------~v~v~E~~~ 59 (398)
T 2xdo_A 24 LSDKNVAIIGGGPVGLTMAKLLQQ----NGI-------DVSVYERDN 59 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHT----TTC-------EEEEEECSS
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH----CCC-------CEEEEeCCC
Confidence 356799999999999999997664 373 688898863
No 366
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=50.37 E-value=12 Score=40.60 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=29.0
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
...+|+|+|||.||+..|..|.+ .|.. .++.++|+..
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~----~G~~-----~~V~v~E~~~ 41 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLA----EKAF-----DQVTLFERRG 41 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHT----TTCC-----SEEEEECSSS
T ss_pred CCCEEEEECccHHHHHHHHHHHh----cCCC-----CCeEEEecCC
Confidence 35789999999999999998764 3631 3789999863
No 367
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=50.22 E-value=14 Score=38.43 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=28.4
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
+..|+|+|||.||+..|-.|.+. |. ++.++|+.-.
T Consensus 4 ~~dVvIvG~G~aGl~~A~~La~~----G~-------~V~l~E~~~~ 38 (397)
T 3cgv_A 4 TYDVLVVGGGPGGSTAARYAAKY----GL-------KTLMIEKRPE 38 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT----TC-------CEEEECSSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHC----CC-------CEEEEeCCCC
Confidence 45799999999999999887653 73 6889998753
No 368
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=50.14 E-value=12 Score=43.05 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=26.9
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+.+|||+|||.||++||..|.. .|+ ++.++|+.
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~----~G~-------kV~VlEr~ 139 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQ----MGF-------NPIIVERG 139 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHH----TTC-------CCEEECSS
T ss_pred CCCEEEECcCHHHHHHHHHHHH----CCC-------eEEEEEcc
Confidence 3679999999999999998874 775 57787764
No 369
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=50.06 E-value=13 Score=45.46 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=28.3
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
.-+|||+|||.||+++|.-|.. .|. ++|.++|++
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~----~G~------~~Vtv~E~~ 220 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLAR----LGY------SDITIFEKQ 220 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHH----TTC------CCEEEEESS
T ss_pred CCEEEEECccHHHHHHHHHHHh----cCC------CcEEEEeCC
Confidence 4589999999999999998874 674 269999985
No 370
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=49.79 E-value=13 Score=35.22 Aligned_cols=77 Identities=8% Similarity=0.003 Sum_probs=46.2
Q ss_pred cCCCceEEecCcchhhHHHHHHHHHHHh-ccccccccc-CceecCCCCCCchHHHhhhc------cccchhhccc--cCC
Q psy14377 704 RLSDNTILFQGAGEGTASVAVAGLLASL-RITKTRLSD-NTILFQGAGEGTASVAIAGL------LASLRITKTR--LSD 773 (848)
Q Consensus 704 ~l~d~riv~~GAG~A~~g~giA~ll~~~-~~~~~~~~d-~g~i~~~r~~~~~~~~~~~~------~~~~r~~~~~--~~~ 773 (848)
++.+.+|+|+|+|.- |..+|+.|... +. ++.+.| +. +........|. .++.-.++.+ +++
T Consensus 36 ~~~~~~v~IiG~G~~--G~~~a~~L~~~~g~-~V~vid~~~-------~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ 105 (183)
T 3c85_A 36 NPGHAQVLILGMGRI--GTGAYDELRARYGK-ISLGIEIRE-------EAAQQHRSEGRNVISGDATDPDFWERILDTGH 105 (183)
T ss_dssp CCTTCSEEEECCSHH--HHHHHHHHHHHHCS-CEEEEESCH-------HHHHHHHHTTCCEEECCTTCHHHHHTBCSCCC
T ss_pred CCCCCcEEEECCCHH--HHHHHHHHHhccCC-eEEEEECCH-------HHHHHHHHCCCCEEEcCCCCHHHHHhccCCCC
Confidence 356778999999999 99999999887 64 343333 21 00111111121 1333345555 788
Q ss_pred CceEEeecCCCcchhhh
Q psy14377 774 NTILFQGSGEGTASVAV 790 (848)
Q Consensus 774 ~~~~~~~s~~~~~~~~~ 790 (848)
+|+.|-.+........+
T Consensus 106 ad~vi~~~~~~~~~~~~ 122 (183)
T 3c85_A 106 VKLVLLAMPHHQGNQTA 122 (183)
T ss_dssp CCEEEECCSSHHHHHHH
T ss_pred CCEEEEeCCChHHHHHH
Confidence 99999877655444433
No 371
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=49.76 E-value=15 Score=38.92 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=28.3
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
...+|+|+|||.||+..|..|... |. ++.++|+.-
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~~----G~-------~v~v~E~~~ 38 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRDA----GV-------DVDVYERSP 38 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHT----TC-------EEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC----CC-------CEEEEecCC
Confidence 357899999999999999987654 73 588888753
No 372
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=49.63 E-value=15 Score=43.92 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=29.9
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
..+.+|||+|||.||+++|..|.. .|. ++.++++...
T Consensus 334 ~~~~~v~viG~G~~Gl~aA~~l~~----~g~-------~v~v~E~~~~ 370 (776)
T 4gut_A 334 YHNKSVIIIGAGPAGLAAARQLHN----FGI-------KVTVLEAKDR 370 (776)
T ss_dssp GTSCEEEEECCSHHHHHHHHHHHH----HTC-------EEEEECSSSS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH----CCC-------cEEEEecccc
Confidence 446799999999999999998874 573 7889887544
No 373
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=49.47 E-value=13 Score=39.14 Aligned_cols=35 Identities=14% Similarity=0.312 Sum_probs=28.8
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 286 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi 286 (848)
..|+|+|||.+|+.+|-.+.+. |. ++.++|+....
T Consensus 5 ~DVvIIGaG~~Gl~~A~~La~~----G~-------~V~vlE~~~~~ 39 (397)
T 2oln_A 5 YDVVVVGGGPVGLATAWQVAER----GH-------RVLVLERHTFF 39 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT----TC-------CEEEEESSCTT
T ss_pred CCEEEECCCHHHHHHHHHHHHC----CC-------eEEEEeCCCCC
Confidence 5799999999999999987654 73 59999987654
No 374
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=49.42 E-value=18 Score=38.34 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=29.7
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
|+...||+++|||..|.+++-++.. .|+- ..|+++|..
T Consensus 3 ~m~~~KI~IIGaG~vG~~la~~l~~----~~~~-----~ei~L~Di~ 40 (317)
T 3d0o_A 3 KFKGNKVVLIGNGAVGSSYAFSLVN----QSIV-----DELVIIDLD 40 (317)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHH----HCSC-----SEEEEECSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHh----CCCC-----CEEEEEeCC
Confidence 4567899999999999999998764 3542 589999974
No 375
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=49.27 E-value=12 Score=39.57 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=27.6
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+..|+|+|||.||+..|-.|.+ .|. ++.++|+.-
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~----~G~-------~V~v~E~~~ 38 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNK----SGF-------KVKIVEKQK 38 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT----TTC-------CEEEECSSC
T ss_pred cCcEEEECCCHHHHHHHHHHHh----CCC-------CEEEEeCCC
Confidence 3689999999999999987654 473 588999874
No 376
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=49.24 E-value=16 Score=38.23 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=27.7
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
.+|+|+|||.||+..|-.|... |. ++.++|+.-.
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~----G~-------~v~v~E~~~~ 36 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKA----GI-------DNVILERQTP 36 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH----TC-------CEEEECSSCH
T ss_pred ccEEEECCCHHHHHHHHHHHHC----CC-------CEEEEeCCCC
Confidence 5799999999999999987765 74 5888887643
No 377
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=49.24 E-value=13 Score=40.69 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=27.7
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
+.+|+|+|||.||+..|..+.+. |. ++.++|+..-
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~----G~-------~V~llEk~~~ 61 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKR----GR-------RVLVIDHARA 61 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHT----TC-------CEEEECSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHC----CC-------cEEEEeCCCC
Confidence 46899999999999999877654 73 6889988653
No 378
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=49.09 E-value=15 Score=38.71 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=26.4
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+|+|+|||.+|+.+|..|.+. | .++.++|+..
T Consensus 2 dVvVIGaGiaGLsaA~~La~~----G-------~~V~vlE~~~ 33 (425)
T 3ka7_A 2 KTVVIGAGLGGLLSAARLSKA----G-------HEVEVFERLP 33 (425)
T ss_dssp EEEEECCBHHHHHHHHHHHHT----T-------CEEEEECSSS
T ss_pred cEEEECCCHHHHHHHHHHHhC----C-------CceEEEeCCC
Confidence 689999999999999987764 6 4688888763
No 379
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=49.03 E-value=16 Score=39.78 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=27.5
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+.+++|+|||.||+..|..+.+. | .++.++|+.
T Consensus 6 ~~dvvIIGaG~aGl~aA~~l~~~----g-------~~V~liE~~ 38 (470)
T 1dxl_A 6 ENDVVIIGGGPGGYVAAIKAAQL----G-------FKTTCIEKR 38 (470)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHH----T-------CCEEEEECS
T ss_pred cCCEEEECCCHHHHHHHHHHHHC----C-------CeEEEEeCC
Confidence 46799999999999999887764 6 368899875
No 380
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=48.99 E-value=13 Score=37.54 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=25.7
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
|.-++|+|+|.||+..|..+.+ .| .++.++|+.
T Consensus 6 ~yDvvIIG~GpAGl~aA~~l~~----~g-------~~V~liE~~ 38 (312)
T 4gcm_A 6 DFDIAIIGAGPAGMTAAVYASR----AN-------LKTVMIERG 38 (312)
T ss_dssp SEEEEEECCSHHHHHHHHHHHH----TT-------CCEEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHH----CC-------CCEEEEecC
Confidence 4568999999999999987654 36 358888864
No 381
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=48.91 E-value=14 Score=40.61 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=27.5
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+.+++|+|||.||+..|..+.+. | .++.++|+.
T Consensus 4 ~~dVvIIGgG~aGl~aA~~l~~~----g-------~~V~liE~~ 36 (463)
T 2r9z_A 4 HFDLIAIGGGSGGLAVAEKAAAF----G-------KRVALIESK 36 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT----T-------CCEEEEESS
T ss_pred cCcEEEECCCHHHHHHHHHHHhC----C-------CcEEEEcCC
Confidence 46899999999999999987653 6 368999975
No 382
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=48.80 E-value=15 Score=39.87 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=28.5
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
..++||+|||.||+..|..+.+. |. ..+|.++|+..
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~----g~-----~~~V~lie~~~ 39 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRAS----GW-----EGNIRLVGDAT 39 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT----TC-----CSEEEEECSCC
T ss_pred CCcEEEEcCHHHHHHHHHHHHcc----Cc-----CCCEEEEECCC
Confidence 46899999999999999987653 63 23799988753
No 383
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=48.64 E-value=20 Score=38.50 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=29.0
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
+..-|++++|||.+|.+++.++.. +|. +|+++|+
T Consensus 165 l~~~~VlViGaGgvG~~aa~~a~~----~Ga-------~V~v~dr 198 (361)
T 1pjc_A 165 VKPGKVVILGGGVVGTEAAKMAVG----LGA-------QVQIFDI 198 (361)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHH----TTC-------EEEEEES
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh----CCC-------EEEEEeC
Confidence 666799999999999999998884 774 6888887
No 384
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=48.62 E-value=17 Score=33.40 Aligned_cols=34 Identities=6% Similarity=0.099 Sum_probs=26.9
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
...+++|+|+|..|..++++|... | .++.++|++
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~----g-------~~V~vid~~ 35 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQR----G-------QNVTVISNL 35 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHT----T-------CCEEEEECC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC----C-------CCEEEEECC
Confidence 356899999999999999987653 5 468888763
No 385
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=48.54 E-value=21 Score=39.34 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
++.+++..|-.|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|+
T Consensus 103 l~~lL~l~r~~g~~l~gktvGIIGlG~IG~~vA~~l~a~----G~-------~V~~~d~ 150 (381)
T 3oet_A 103 FSALLMLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEAL----GI-------RTLLCDP 150 (381)
T ss_dssp HHHHHHHHHHTTCCGGGCEEEEECCSHHHHHHHHHHHHT----TC-------EEEEECH
T ss_pred HHHHHHHHHhcCCccCCCEEEEEeECHHHHHHHHHHHHC----CC-------EEEEECC
Confidence 778888888889999999999999999999999988754 74 5777775
No 386
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Probab=48.52 E-value=29 Score=37.63 Aligned_cols=47 Identities=23% Similarity=0.193 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhh--------------------hCCcCCCceEEecCcchhhHHHHHHHHHHHhccc
Q psy14377 686 TASVAVAGLLASLRI--------------------TKTRLSDNTILFQGAGEGTASVAVAGLLASLRIT 734 (848)
Q Consensus 686 TaaV~LAgllaAlr~--------------------t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~ 734 (848)
+|=-+++.+|+..|- .+..|.+.++.|+|.|.- |-.+|+.+...+.+
T Consensus 123 vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~I--G~~vA~~l~~~G~~ 189 (364)
T 2j6i_A 123 VAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRI--GYRVLERLVPFNPK 189 (364)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHH--HHHHHHHHGGGCCS
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcCHH--HHHHHHHHHhCCCc
Confidence 444467777777662 366899999999999999 99999999877643
No 387
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=48.42 E-value=21 Score=39.22 Aligned_cols=48 Identities=23% Similarity=0.291 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
++.+++..|-.+..|++.+|.|+|.|..|..+|+.+... |+ +++.+|+
T Consensus 100 l~~lL~l~r~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~----G~-------~V~~~d~ 147 (380)
T 2o4c_A 100 LGCLLAMAEVRGADLAERTYGVVGAGQVGGRLVEVLRGL----GW-------KVLVCDP 147 (380)
T ss_dssp HHHHHHHHHHHTCCGGGCEEEEECCSHHHHHHHHHHHHT----TC-------EEEEECH
T ss_pred HHHHHHHHhhhhcccCCCEEEEEeCCHHHHHHHHHHHHC----CC-------EEEEEcC
Confidence 778888888889999999999999999999999987754 74 5777775
No 388
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=48.32 E-value=9.1 Score=43.84 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=34.2
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
++|++.||+++|+|..|..+++.|+ ..|+ .+|.++|.+=+
T Consensus 28 ~~L~~~~VlvvG~GGlGseiak~La----~aGV------g~itlvD~D~V 67 (531)
T 1tt5_A 28 EALESAHVCLINATATGTEILKNLV----LPGI------GSFTIIDGNQV 67 (531)
T ss_dssp HHHHHCEEEEECCSHHHHHHHHHHH----TTTC------SEEEEECCCBB
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHH----HcCC------CeEEEEeCCEe
Confidence 4678899999999999999999888 3787 49999997543
No 389
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=48.22 E-value=13 Score=40.16 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=29.0
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhc-CcEEEEcCCCc
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDAR-DKIWMVDSKGL 285 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~-~~i~~vD~kGL 285 (848)
...|+|+|||.||+..|..+.+. |.. .. -++.++|+..-
T Consensus 30 ~~dVvIIGaG~aGl~aA~~L~~~----g~~---~~~~~v~liE~~~~ 69 (463)
T 3s5w_A 30 VHDLIGVGFGPSNIALAIALQER----AQA---QGALEVLFLDKQGD 69 (463)
T ss_dssp EESEEEECCSHHHHHHHHHHHHH----HHH---HCCCCEEEEESCSS
T ss_pred cCCEEEECCCHHHHHHHHHHHhc----ccc---cCcccEEEEecCCC
Confidence 35799999999999999988765 410 00 47889988653
No 390
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=47.91 E-value=7 Score=44.76 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=32.9
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
++|+..||+++|+|..|.-+|+.|+.+ | .++|.++|.+=
T Consensus 28 ~~L~~~~VlvvG~GGlGseiak~La~a----G------Vg~itlvD~D~ 66 (531)
T 1tt5_A 28 EALESAHVCLINATATGTEILKNLVLP----G------IGSFTIIDGNQ 66 (531)
T ss_dssp HHHHHCEEEEECCSHHHHHHHHHHHTT----T------CSEEEEECCCB
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHc----C------CCeEEEEeCCE
Confidence 356778999999999999999987765 9 57999999753
No 391
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=47.73 E-value=13 Score=39.95 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=27.6
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhc--CCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKE--GTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~--G~~~e~~~~ni~m~DskGv 59 (848)
+.+|+|+|+|.||+++|..+.. . | .++.++|+...
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~----~~~g-------~~V~v~e~~~~ 101 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAK----NRPD-------LKVCIIESSVA 101 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHH----HCTT-------SCEEEECSSSS
T ss_pred cCCEEEECccHHHHHHHHHHHh----cCCC-------CeEEEEecCcc
Confidence 3479999999999999987774 4 5 36888887543
No 392
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=47.70 E-value=32 Score=37.01 Aligned_cols=67 Identities=19% Similarity=0.037 Sum_probs=41.5
Q ss_pred CCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchhhccccCCCceEEee
Q psy14377 702 KTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQG 780 (848)
Q Consensus 702 ~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 780 (848)
+..|.+.++.|+|.|.- |-.+|+.+...+. ++...| +..........|.. .-.+++.+.++|+.+-.
T Consensus 160 ~~~l~g~tvgIIGlG~I--G~~vA~~l~~~G~-~V~~~d-------~~~~~~~~~~~g~~--~~~l~ell~~aDvV~l~ 226 (335)
T 2g76_A 160 GTELNGKTLGILGLGRI--GREVATRMQSFGM-KTIGYD-------PIISPEVSASFGVQ--QLPLEEIWPLCDFITVH 226 (335)
T ss_dssp BCCCTTCEEEEECCSHH--HHHHHHHHHTTTC-EEEEEC-------SSSCHHHHHHTTCE--ECCHHHHGGGCSEEEEC
T ss_pred CcCCCcCEEEEEeECHH--HHHHHHHHHHCCC-EEEEEC-------CCcchhhhhhcCce--eCCHHHHHhcCCEEEEe
Confidence 56799999999999999 9999999987653 333222 11111111222332 12456667777776644
No 393
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=47.55 E-value=13 Score=37.69 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=26.9
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+..+++|+|||.||+..|..+.+. |. ++.++|+
T Consensus 7 ~~~~vvIIG~G~aGl~~A~~l~~~----g~-------~v~lie~ 39 (333)
T 1vdc_A 7 HNTRLCIVGSGPAAHTAAIYAARA----EL-------KPLLFEG 39 (333)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHT----TC-------CCEEECC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC----CC-------eEEEEec
Confidence 346899999999999999987654 63 5888887
No 394
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=47.50 E-value=15 Score=41.98 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=28.9
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
+..|||+|||.||+++|--+. +.|+ +|+++++....
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la----~~G~-------~V~vlEK~~~~ 42 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQIS----QSGQ-------TCALLSKVFPT 42 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHH----HTTC-------CEEEEESSCGG
T ss_pred cCCEEEECcCHHHHHHHHHHH----HCCC-------cEEEEecCCCC
Confidence 567999999999999998776 3574 68999986543
No 395
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=47.48 E-value=15 Score=39.54 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=27.1
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
++|||+|||.||+..|..+.+. ..| .+|.++|+.
T Consensus 3 ~~vvIIGgG~aGl~aA~~L~~~--~~g-------~~Vtlie~~ 36 (430)
T 3h28_A 3 KHVVVIGGGVGGIATAYNLRNL--MPD-------LKITLISDR 36 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH--CTT-------CEEEEECSS
T ss_pred CCEEEECccHHHHHHHHHHHcC--CCC-------CeEEEECCC
Confidence 5899999999999999987762 122 478898875
No 396
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Probab=47.40 E-value=84 Score=34.28 Aligned_cols=103 Identities=17% Similarity=0.106 Sum_probs=71.3
Q ss_pred cchhHHHHHHHHHHHHhhCCceeeeeecCCCcchH---HHHHHHccc--Cc-ee---ccCCchHHHHHHHHHHHHHhhhC
Q psy14377 632 QAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAF---RFLDTYRNR--YC-VF---NDDIQGTASVAVAGLLASLRITK 702 (848)
Q Consensus 632 ~~y~~fvdefv~av~~~fGp~~~IqfEDf~~~naf---~lL~ryr~~--~~-~F---nDDiQGTaaV~LAgllaAlr~t~ 702 (848)
.+-++++..|.+++.+..|+ .|-=+|++.. .. -+.++|+-. -| .+ .|--.-||-=+.-++-.+++..|
T Consensus 93 ~~~e~~~r~~~~~~~~l~g~--~ipa~D~gt~-~~~m~~~~~~~~~~tGk~~~~GGs~~~~~aTg~Gv~~~~~~~~~~~G 169 (355)
T 1c1d_A 93 STWARILRIHAENIDKLSGN--YWTGPDVNTN-SADMDTLNDTTEFVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRG 169 (355)
T ss_dssp HHHHHHHHHHHHHHHHTTTS--EEEEECTTCC-HHHHHHHHHHCSCBCCCCGGGTSCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHhcCC--cccCCCCCCC-HHHHHHHHHhcCeeeccchhhCCCCCchhHHHHHHHHHHHHHHHhcC
Confidence 34467777888888887775 5788999763 33 245555521 11 11 11112355555667777888889
Q ss_pred C-cCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 703 T-RLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 703 ~-~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
. +|++.+++|.|.|.- |..+|+.+...+. ++.++|
T Consensus 170 ~~~L~GktV~I~G~GnV--G~~~A~~l~~~Ga-kVvvsD 205 (355)
T 1c1d_A 170 LGSLDGLTVLVQGLGAV--GGSLASLAAEAGA-QLLVAD 205 (355)
T ss_dssp CCCSTTCEEEEECCSHH--HHHHHHHHHHTTC-EEEEEC
T ss_pred CCCCCCCEEEEECcCHH--HHHHHHHHHHCCC-EEEEEe
Confidence 7 899999999999999 9999999998886 444666
No 397
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=47.26 E-value=8.8 Score=43.01 Aligned_cols=32 Identities=9% Similarity=0.229 Sum_probs=25.0
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.||||+|+|.||+..|+.|.. .+ -+|.++|++
T Consensus 43 prVVIIGgG~AGl~~A~~L~~----~~-------~~VtLId~~ 74 (502)
T 4g6h_A 43 PNVLILGSGWGAISFLKHIDT----KK-------YNVSIISPR 74 (502)
T ss_dssp CEEEEECSSHHHHHHHHHSCT----TT-------CEEEEEESS
T ss_pred CCEEEECCcHHHHHHHHHhhh----CC-------CcEEEECCC
Confidence 589999999999999876532 22 379999875
No 398
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=47.18 E-value=18 Score=37.32 Aligned_cols=70 Identities=13% Similarity=0.203 Sum_probs=44.6
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCccccCCCCCCCChhhhhhcccCCCCCCHHHHhcc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKT 92 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi~~~R~d~~l~~~k~~~a~~~~~~~tL~ea~~~ 92 (848)
+..||.|+|+|.-|.++++-+.. .|.++ ++|+++|+.- .+ +...++.|-... ..++.|+++.
T Consensus 2 ~~~~I~iIG~G~mG~aia~~l~~----~g~~~----~~V~v~dr~~----~~----~~~l~~~~gi~~--~~~~~~~~~~ 63 (280)
T 3tri_A 2 NTSNITFIGGGNMARNIVVGLIA----NGYDP----NRICVTNRSL----DK----LDFFKEKCGVHT--TQDNRQGALN 63 (280)
T ss_dssp CCSCEEEESCSHHHHHHHHHHHH----TTCCG----GGEEEECSSS----HH----HHHHHHTTCCEE--ESCHHHHHSS
T ss_pred CCCEEEEEcccHHHHHHHHHHHH----CCCCC----CeEEEEeCCH----HH----HHHHHHHcCCEE--eCChHHHHhc
Confidence 35689999999999999998874 78654 5899988621 11 222222222111 2467888885
Q ss_pred cCCCchhhhh
Q psy14377 93 VKPSILIEEL 102 (848)
Q Consensus 93 s~~~v~~g~v 102 (848)
+|+++-.+
T Consensus 64 --aDvVilav 71 (280)
T 3tri_A 64 --ADVVVLAV 71 (280)
T ss_dssp --CSEEEECS
T ss_pred --CCeEEEEe
Confidence 56655433
No 399
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=47.16 E-value=16 Score=41.40 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=28.8
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
++..|||+|||.+|+++|.-+. +.|+ ++.++++.
T Consensus 17 ~~~DVvVIGgGi~Gl~~A~~La----~~G~-------~V~LlEk~ 50 (561)
T 3da1_A 17 KQLDLLVIGGGITGAGIALDAQ----VRGI-------QTGLVEMN 50 (561)
T ss_dssp SCEEEEEECCSHHHHHHHHHHH----TTTC-------CEEEEESS
T ss_pred CCCCEEEECCCHHHHHHHHHHH----hCCC-------cEEEEECC
Confidence 5678999999999999999776 3675 68999986
No 400
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=47.12 E-value=35 Score=36.99 Aligned_cols=68 Identities=15% Similarity=0.043 Sum_probs=44.3
Q ss_pred CCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCC-CchHHHhhhccccchhhccccCCCceEEee
Q psy14377 702 KTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGE-GTASVAIAGLLASLRITKTRLSDNTILFQG 780 (848)
Q Consensus 702 ~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 780 (848)
+..|.+.++.|+|.|.- |-.+|+.+..++.+ +...| |.. ........|... -..+++.+.++|+.+-.
T Consensus 159 ~~~l~gktvGIIG~G~I--G~~vA~~l~~~G~~-V~~~d-------r~~~~~~~~~~~g~~~-~~~l~ell~~aDvV~l~ 227 (351)
T 3jtm_A 159 AYDLEGKTIGTVGAGRI--GKLLLQRLKPFGCN-LLYHD-------RLQMAPELEKETGAKF-VEDLNEMLPKCDVIVIN 227 (351)
T ss_dssp CCCSTTCEEEEECCSHH--HHHHHHHHGGGCCE-EEEEC-------SSCCCHHHHHHHCCEE-CSCHHHHGGGCSEEEEC
T ss_pred cccccCCEEeEEEeCHH--HHHHHHHHHHCCCE-EEEeC-------CCccCHHHHHhCCCeE-cCCHHHHHhcCCEEEEC
Confidence 56799999999999999 99999999877643 22222 222 122223334321 13577788888887643
No 401
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=47.06 E-value=15 Score=40.31 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=26.8
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+.+++|+|||.||+..|..+.+. | .++.++|++
T Consensus 24 ~~~dVvVIGgG~aGl~aA~~la~~----G-------~~V~liEk~ 57 (491)
T 3urh_A 24 MAYDLIVIGSGPGGYVCAIKAAQL----G-------MKVAVVEKR 57 (491)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHT----T-------CCEEEEESS
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC----C-------CeEEEEecC
Confidence 346899999999999999887653 6 368899975
No 402
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=47.05 E-value=15 Score=44.67 Aligned_cols=34 Identities=26% Similarity=0.493 Sum_probs=28.4
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
+.+|||+|||.||+++|.-+.. .|. +|+++|+..
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~----~G~-------~V~lie~~~ 161 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASR----SGA-------RVMLLDERA 161 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHh----CCC-------cEEEEeCCC
Confidence 4579999999999999998874 674 799999864
No 403
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=47.02 E-value=20 Score=32.26 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=26.6
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
.-+|+++|+|.-|.++++.|.. .|. +++++|+
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~----~g~-------~V~~id~ 37 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTA----AGK-------KVLAVDK 37 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH----TTC-------CEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHH----CCC-------eEEEEEC
Confidence 3589999999999999998884 674 6788886
No 404
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=46.94 E-value=16 Score=39.91 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=27.0
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+.+++|+|||.||+..|..+.+. | .++.++|+.
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~----g-------~~V~lie~~ 34 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQL----G-------MKTACVEKR 34 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT----T-------CCEEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHHC----C-------CeEEEEeCC
Confidence 46799999999999999876653 6 368999885
No 405
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=46.85 E-value=18 Score=39.26 Aligned_cols=36 Identities=14% Similarity=0.325 Sum_probs=29.6
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
+.++||+|||.+|+++|..|.. .| .++.++|+...+
T Consensus 6 ~~~v~iiG~G~~gl~~a~~l~~----~g-------~~v~~~e~~~~~ 41 (433)
T 1d5t_A 6 EYDVIVLGTGLTECILSGIMSV----NG-------KKVLHMDRNPYY 41 (433)
T ss_dssp BCSEEEECCSHHHHHHHHHHHH----TT-------CCEEEECSSSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHH----CC-------CcEEEEecCCCc
Confidence 4679999999999999998874 56 478999987543
No 406
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=46.81 E-value=17 Score=38.62 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=26.4
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+|+|+|||.+|+..|-.|.+. | .++.++|+..
T Consensus 2 dVvVIGaGiaGLsaA~~La~~----G-------~~V~vlE~~~ 33 (421)
T 3nrn_A 2 RAVVVGAGLGGLLAGAFLARN----G-------HEIIVLEKSA 33 (421)
T ss_dssp EEEEESCSHHHHHHHHHHHHT----T-------CEEEEECSSS
T ss_pred cEEEECCCHHHHHHHHHHHHC----C-------CeEEEEeCCC
Confidence 699999999999999987654 6 3688888764
No 407
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=46.67 E-value=16 Score=42.96 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=28.2
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
++..|||+|||.||+++|-.+. +.|+ ++.++|+.
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLA----r~G~-------kVlLIEk~ 60 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAA----RMGQ-------QTLLLTHN 60 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHH----HTTC-------CEEEEESC
T ss_pred CcCCEEEECChHHHHHHHHHHH----hCCC-------CEEEEeec
Confidence 4578999999999999998776 4785 68888875
No 408
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A
Probab=46.55 E-value=36 Score=37.93 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCc-CCCceEEEeccchHHHHHHHHHHH
Q psy14377 224 VAGLLASLRITKTR-LSDNTILFQGAGEASLGIADLCVM 261 (848)
Q Consensus 224 lAgll~Al~~tg~~-l~d~riv~~GAGaAg~gia~ll~~ 261 (848)
.-++..+++-.|.. |++.|+.|+|.|..|..+|+++..
T Consensus 195 ~~~~~~~~~~~G~~~l~gktvgI~G~G~VG~~vA~~l~~ 233 (419)
T 1gtm_A 195 SYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSE 233 (419)
T ss_dssp HHHHHHHHHHTTCSCSTTCEEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcccCCCEEEEEcCCHHHHHHHHHHHH
Confidence 34677788889999 999999999999999999998765
No 409
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=46.48 E-value=19 Score=33.94 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=27.7
Q ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhc-CCCccccCCeEEEEcC
Q psy14377 12 LSDNTILFQGAGEASLGIADLCVMAMQKE-GTSEQDARDKIWMVDS 56 (848)
Q Consensus 12 i~d~kiV~~GAGaA~ia~a~L~~~am~~~-G~~~e~~~~ni~m~Ds 56 (848)
+.+.+|+|+|+|.-|..+++.|.. . |. +++++|+
T Consensus 37 ~~~~~v~IiG~G~~G~~~a~~L~~----~~g~-------~V~vid~ 71 (183)
T 3c85_A 37 PGHAQVLILGMGRIGTGAYDELRA----RYGK-------ISLGIEI 71 (183)
T ss_dssp CTTCSEEEECCSHHHHHHHHHHHH----HHCS-------CEEEEES
T ss_pred CCCCcEEEECCCHHHHHHHHHHHh----ccCC-------eEEEEEC
Confidence 456689999999999999998874 5 64 5788876
No 410
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=46.46 E-value=20 Score=41.46 Aligned_cols=35 Identities=14% Similarity=0.313 Sum_probs=28.8
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
...+|+|+|||.||++||..|.. .|. ++.++++..
T Consensus 106 ~~~~v~viG~G~~gl~~a~~l~~----~g~-------~v~~~e~~~ 140 (662)
T 2z3y_A 106 KTGKVIIIGSGVSGLAAARQLQS----FGM-------DVTLLEARD 140 (662)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHH----TTC-------EEEEECSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHH----CCC-------eEEEEecCC
Confidence 35689999999999999998874 674 688888763
No 411
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=46.46 E-value=17 Score=35.83 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=27.0
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+..++|+|+|.+|+..|..+.+. | .++.++|+.
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~----g-------~~v~lie~~ 35 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQK----G-------VRVGLLTQS 35 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT----T-------CCEEEEESC
T ss_pred CCCEEEECcCHHHHHHHHHHHHC----C-------CCEEEEecC
Confidence 46799999999999999987653 6 368888875
No 412
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=46.33 E-value=14 Score=38.91 Aligned_cols=35 Identities=31% Similarity=0.442 Sum_probs=29.7
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
++++-+|+++|+|..|...+++|+ +.|. +|.++|.
T Consensus 10 ~l~~k~VLVVGgG~va~rka~~Ll----~~Ga-------~VtViap 44 (274)
T 1kyq_A 10 QLKDKRILLIGGGEVGLTRLYKLM----PTGC-------KLTLVSP 44 (274)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHG----GGTC-------EEEEEEE
T ss_pred EcCCCEEEEECCcHHHHHHHHHHH----hCCC-------EEEEEcC
Confidence 467788999999999999999998 4674 7888886
No 413
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=46.32 E-value=14 Score=40.59 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=28.1
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+.+++|+|||.||+..|..+.+. | .++.++|+.
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~----g-------~~V~liE~~ 43 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASY----G-------AKTLLVEAK 43 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHT----S-------CCEEEEESS
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHC----C-------CcEEEEeCC
Confidence 357899999999999999987753 6 368999985
No 414
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=46.31 E-value=22 Score=37.24 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=27.1
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.||.|+|||+.|.++|..+... |+. +++++|.+
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~----g~~------~V~l~D~~ 37 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKD----NLA------DVVLFDIA 37 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH----TCC------EEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCc------eEEEEeCC
Confidence 5899999999999999988765 731 49998873
No 415
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=46.28 E-value=13 Score=40.66 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=28.0
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+.+++|+|||.||+..|..+.+. | .++.++|+.-
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~----g-------~~V~lie~~~ 39 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQL----G-------LKVLAVEAGE 39 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT----T-------CCEEEEESSC
T ss_pred cCCEEEECcCHHHHHHHHHHHHC----C-------CeEEEEeCCC
Confidence 57899999999999999987653 5 3689999853
No 416
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=46.10 E-value=15 Score=40.94 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=28.4
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
.+.+++|+|||.||+..|..+.+. | .++.++|+..
T Consensus 42 ~~~dVvIIGgG~aGl~aA~~l~~~----G-------~~V~liE~~~ 76 (523)
T 1mo9_A 42 REYDAIFIGGGAAGRFGSAYLRAM----G-------GRQLIVDRWP 76 (523)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHT----T-------CCEEEEESSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHC----C-------CCEEEEeCCC
Confidence 347899999999999999987754 6 3688998853
No 417
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=46.10 E-value=17 Score=41.28 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=28.8
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
.+.+|||+|||.||+..|..|.+ .|. ++.++|+..
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~----~g~-------~v~iiE~~~ 42 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQ----AGM-------KVLGIEAGE 42 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSS
T ss_pred CCCCEEEECccHHHHHHHHHHHh----CCC-------CEEEEeCCC
Confidence 45789999999999999998865 363 589999864
No 418
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=46.00 E-value=14 Score=36.99 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=24.8
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.-++|+|+|.||+..|..+.+ .|. ++.++|+.
T Consensus 5 yDvvIIG~GpAGl~AA~~la~----~g~-------~v~liE~~ 36 (314)
T 4a5l_A 5 HDVVIIGSGPAAHTAAIYLGR----SSL-------KPVMYEGF 36 (314)
T ss_dssp EEEEEECCSHHHHHHHHHHHH----TTC-------CCEEECCS
T ss_pred CcEEEECCCHHHHHHHHHHHH----CCC-------CEEEEecC
Confidence 469999999999999976554 363 57788864
No 419
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=45.86 E-value=17 Score=43.04 Aligned_cols=37 Identities=30% Similarity=0.348 Sum_probs=30.2
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCcc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGvi 60 (848)
+.+|||+|||.+|+++|.-|.+ .|. .+|.++|+....
T Consensus 4 ~~dVvIIGgGi~Gls~A~~La~----~G~------~~V~vlE~~~~~ 40 (830)
T 1pj5_A 4 TPRIVIIGAGIVGTNLADELVT----RGW------NNITVLDQGPLN 40 (830)
T ss_dssp CCCEEEECCSHHHHHHHHHHHH----TTC------CCEEEECSSCTT
T ss_pred CCCEEEECcCHHHHHHHHHHHh----CCC------CcEEEEeCCCCC
Confidence 5689999999999999998874 674 279999987653
No 420
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=45.80 E-value=19 Score=39.30 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=27.5
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCcc
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 286 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGLi 286 (848)
..+|||+|||.||+..|..|.+. +- ..+|.++|+..-+
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~----~~-----g~~Vtvie~~~~~ 40 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRL----DP-----EAHVTMIDQASRI 40 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHH----CT-----TSEEEEECCC---
T ss_pred CCcEEEECCCHHHHHHHHHHHhh----Cc-----CCCEEEEECCCcc
Confidence 46899999999999999987754 20 2479999886443
No 421
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=45.79 E-value=15 Score=37.77 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=27.0
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
...+++|+|||.||+..|..+.+. |. ++.++|+.
T Consensus 13 ~~~~vvIIG~G~aGl~aA~~l~~~----g~-------~v~lie~~ 46 (335)
T 2a87_A 13 PVRDVIVIGSGPAGYTAALYAARA----QL-------APLVFEGT 46 (335)
T ss_dssp CCEEEEEECCHHHHHHHHHHHHHT----TC-------CCEEECCS
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC----CC-------eEEEEecC
Confidence 457899999999999999987653 63 57788853
No 422
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=45.63 E-value=19 Score=40.98 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=28.8
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
++..|||+|||.+|+++|.-+.. .|+ +|.++|+..
T Consensus 31 ~~~DVvVIGgGi~G~~~A~~La~----rG~-------~V~LlE~~~ 65 (571)
T 2rgh_A 31 EELDLLIIGGGITGAGVAVQAAA----SGI-------KTGLIEMQD 65 (571)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHH----CCC-------cEEEEeCCC
Confidence 35689999999999999998774 675 689999754
No 423
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=45.51 E-value=20 Score=39.66 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=28.9
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
...+++|+|||.+|+++|..|.+ .|. .+|.++|+..
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~----~g~------~~v~v~E~~~ 43 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTE----LGY------KNWHLYECND 43 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHH----TTC------CSEEEEESSS
T ss_pred cCCCEEEECcCHHHHHHHHHHHH----cCC------CCEEEEeCCC
Confidence 35689999999999999998874 562 3788998763
No 424
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=45.25 E-value=15 Score=40.30 Aligned_cols=36 Identities=17% Similarity=0.341 Sum_probs=28.9
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
..-||+|+|.|-+|+++|+++. +.|. ++..+|++-.
T Consensus 4 ~~~~v~viG~G~~G~~~a~~l~----~~G~-------~v~~~D~~~~ 39 (439)
T 2x5o_A 4 QGKNVVIIGLGLTGLSCVDFFL----ARGV-------TPRVMDTRMT 39 (439)
T ss_dssp TTCCEEEECCHHHHHHHHHHHH----TTTC-------CCEEEESSSS
T ss_pred CCCEEEEEeecHHHHHHHHHHH----hCCC-------EEEEEECCCC
Confidence 4457999999999999998887 4785 6788898543
No 425
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=45.25 E-value=14 Score=45.52 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=33.9
Q ss_pred CcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 236 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 236 ~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
++|+..+|+++|+|..|.-+|+.|+.+ | .++|.++|.+
T Consensus 23 ~rL~~s~VlIvG~GGlGseiak~La~a----G------Vg~itlvD~D 60 (1015)
T 3cmm_A 23 LKMQTSNVLILGLKGLGVEIAKNVVLA----G------VKSMTVFDPE 60 (1015)
T ss_dssp HHHTTCEEEEECCSHHHHHHHHHHHHH----C------CSEEEEECCS
T ss_pred HHHhcCEEEEECCChHHHHHHHHHHHc----C------CCeEEEecCC
Confidence 457889999999999999999998877 9 6799999975
No 426
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=45.19 E-value=20 Score=32.71 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=26.0
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+|+|+|+|..|..+|+.|... | .+++++|++
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~----g-------~~v~vid~~ 39 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS----D-------IPLVVIETS 39 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT----T-------CCEEEEESC
T ss_pred CCEEEECcCHHHHHHHHHHHHC----C-------CCEEEEECC
Confidence 5799999999999999987754 6 368888873
No 427
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=45.12 E-value=16 Score=41.51 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=28.7
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
.+.+|||+|||.||+..|..|.+ .|. ++.++|+..
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~----~G~-------~v~iiE~~~ 54 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRS----QGL-------TVRAFEAAS 54 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH----TTC-------CEEEECSSS
T ss_pred CCCCEEEECchHHHHHHHHHHHh----CCC-------CEEEEeCCC
Confidence 35689999999999999998765 363 699999864
No 428
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=45.06 E-value=24 Score=38.27 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=28.5
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
..+|||+|||.||+..|..|.+. +- ..+|.++|+..
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~----~~-----~~~V~vie~~~ 38 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRL----KP-----EWDVKVFEATE 38 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH----CT-----TSEEEEECSSS
T ss_pred cCcEEEECCcHHHHHHHHHHHHh----Cc-----CCCEEEEECCC
Confidence 46899999999999999987654 31 24789998864
No 429
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=45.05 E-value=24 Score=36.40 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=28.1
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
...||+|+|||+.|.+++..+.. .|.- .+|+++|+.
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~----~g~~-----~~V~l~d~~ 41 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQ----RGIA-----REIVLEDIA 41 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH----TTCC-----SEEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHh----CCCC-----CEEEEEeCC
Confidence 34699999999999999998874 5642 378998874
No 430
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=45.04 E-value=16 Score=36.71 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=24.2
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.+++|+|||.||+..|..+.+ .|. ++.++|+
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~----~g~-------~v~li~~ 32 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSAR----KGI-------RTGLMGE 32 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHT----TTC-------CEEEECS
T ss_pred CCEEEECcCHHHHHHHHHHHH----CCC-------cEEEEeC
Confidence 579999999999999987664 363 5667664
No 431
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=45.03 E-value=17 Score=39.55 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=26.4
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+++|+|||.||+..|..+.+. | .++.++|+.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~----g-------~~V~lie~~ 33 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQL----G-------MKVGVVEKE 33 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT----T-------CCEEEEESS
T ss_pred CCEEEECCChhHHHHHHHHHHC----C-------CeEEEEeCC
Confidence 4799999999999999877653 6 368899875
No 432
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=44.87 E-value=19 Score=39.61 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=28.9
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
..++||+|||.||+..|..+.+. |. ...++.++|+..
T Consensus 35 ~~dvvIIGaG~aGl~aA~~l~~~----g~----~~~~V~lie~~~ 71 (490)
T 2bc0_A 35 GSKIVVVGANHAGTACIKTMLTN----YG----DANEIVVFDQNS 71 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH----HG----GGSEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhc----CC----CCCeEEEEECCC
Confidence 47899999999999999988764 30 125799998754
No 433
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=44.81 E-value=14 Score=37.21 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=25.9
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
..+|+|+|||.||+..|..+.+. |. ++.++|+.
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~----g~-------~v~lie~~ 37 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARA----NL-------QPVLITGM 37 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTT----TC-------CCEEECCS
T ss_pred cCCEEEECcCHHHHHHHHHHHHC----CC-------cEEEEccC
Confidence 46899999999999999987643 63 47778853
No 434
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3
Probab=44.76 E-value=20 Score=40.73 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=39.1
Q ss_pred CCchHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 682 DIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 682 DiQGTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
.+.|+......|+ .+.++..+.+.+++|+|.|.- |-++|+.+...++ ++...|
T Consensus 235 ~~~~~~~~l~~gw---~r~~~~~l~GktVgIIG~G~I--G~~vA~~l~~~G~-~Viv~d 287 (479)
T 1v8b_A 235 NVYGCRHSLPDGL---MRATDFLISGKIVVICGYGDV--GKGCASSMKGLGA-RVYITE 287 (479)
T ss_dssp HHHHHHHHHHHHH---HHHHCCCCTTSEEEEECCSHH--HHHHHHHHHHHTC-EEEEEC
T ss_pred chHhHHHHHhhhh---hhccccccCCCEEEEEeeCHH--HHHHHHHHHhCcC-EEEEEe
Confidence 3444444455552 256788999999999999999 9999999988775 444444
No 435
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=44.70 E-value=21 Score=41.44 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=27.7
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
..+|||+|||.||+..|..+.+. | .++.++|+.
T Consensus 391 ~~~VvIIGgG~AGl~aA~~La~~----G-------~~V~liE~~ 423 (690)
T 3k30_A 391 DARVLVVGAGPSGLEAARALGVR----G-------YDVVLAEAG 423 (690)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH----T-------CEEEEECSS
T ss_pred cceEEEECCCHHHHHHHHHHHHC----C-------CeEEEEecC
Confidence 46899999999999999988765 6 358888875
No 436
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=44.47 E-value=13 Score=40.00 Aligned_cols=34 Identities=32% Similarity=0.478 Sum_probs=26.6
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+.-||||+|||.||+..|..|. .. ..+|.++|+.
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~----~~-------~~~itlie~~ 41 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAAL----GK-------CDDITMINSE 41 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHT----TT-------CSCEEEECSS
T ss_pred CCCCEEEEcCcHHHHHHHHHHh----CC-------CCEEEEEECC
Confidence 3468999999999999999871 12 3478888875
No 437
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=44.39 E-value=17 Score=38.48 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=26.7
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+.+++|+|||.||+..|..+.+ .|. .-+|.++|++
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~----~g~-----~~~V~lie~~ 38 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRK----LDG-----ETPLLMITAD 38 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHT----TCS-----SSCEEEECSS
T ss_pred CCcEEEECChHHHHHHHHHHHh----hCC-----CCCEEEEECC
Confidence 3679999999999999987754 363 2367888764
No 438
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=44.32 E-value=21 Score=38.17 Aligned_cols=30 Identities=30% Similarity=0.330 Sum_probs=26.2
Q ss_pred CCcCCCceEEecCcchhhHHHHHHHHHHHhcc
Q psy14377 702 KTRLSDNTILFQGAGEGTASVAVAGLLASLRI 733 (848)
Q Consensus 702 ~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~ 733 (848)
+..|.+.++.|+|.|.- |-.+|+.+...+.
T Consensus 140 ~~~l~g~tvGIIG~G~I--G~~vA~~l~~~G~ 169 (330)
T 4e5n_A 140 GTGLDNATVGFLGMGAI--GLAMADRLQGWGA 169 (330)
T ss_dssp CCCSTTCEEEEECCSHH--HHHHHHHTTTSCC
T ss_pred CCccCCCEEEEEeeCHH--HHHHHHHHHHCCC
Confidence 55789999999999999 9999999876654
No 439
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=44.17 E-value=9.1 Score=42.49 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=27.3
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
..+|||+|||.||+++|.-+.. . .+|+++|+...
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~----~--------~~V~vie~~~~ 141 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQ----Y--------LTVALIEERGW 141 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTT----T--------CCEEEECTTSS
T ss_pred cCCEEEECccHHHHHHHHHHHh----c--------CCEEEEeCCCC
Confidence 3579999999999999997763 2 37999998653
No 440
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=44.08 E-value=22 Score=39.47 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=28.3
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
.+|||+|||.||+..|..|.+. |- ..+|.++|+..-
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~----~~-----~~~V~lie~~~~ 37 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRL----SE-----TAEIIMFERGEY 37 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH----CS-----SSEEEEECSSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhh----Cc-----CCCEEEEECCCC
Confidence 4799999999999999987754 31 247899988743
No 441
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=43.83 E-value=14 Score=40.25 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=27.2
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+.+++|+|||.||+..|..+.+ .| .++.++|+.
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~----~g-------~~V~liE~~ 36 (450)
T 1ges_A 4 HYDYIAIGGGSGGIASINRAAM----YG-------QKCALIEAK 36 (450)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT----TT-------CCEEEEESS
T ss_pred cCCEEEECCCHHHHHHHHHHHh----CC-------CeEEEEcCC
Confidence 4689999999999999998764 35 469999975
No 442
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=43.82 E-value=17 Score=42.63 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=27.9
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
++..|||+|||.||+++|--+. +.|+ ++.++++.
T Consensus 26 ~~yDVIVIGgG~AGl~AAlalA----r~G~-------kVlLIEk~ 59 (637)
T 2zxi_A 26 DEFDVVVIGGGHAGIEAALAAA----RMGA-------KTAMFVLN 59 (637)
T ss_dssp GCCSEEEECCSHHHHHHHHHHH----HTTC-------CEEEEESC
T ss_pred CcCCEEEECCCHHHHHHHHHHH----HCCC-------CEEEEEec
Confidence 3578999999999999998776 4785 68888875
No 443
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=43.80 E-value=21 Score=35.87 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=27.5
Q ss_pred hCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 234 TKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 234 tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
...++...||.|+|+|.-|.++|..+... | .+++++|++
T Consensus 13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~----G-------~~V~~~~r~ 51 (245)
T 3dtt_A 13 ENLYFQGMKIAVLGTGTVGRTMAGALADL----G-------HEVTIGTRD 51 (245)
T ss_dssp ------CCEEEEECCSHHHHHHHHHHHHT----T-------CEEEEEESC
T ss_pred cccccCCCeEEEECCCHHHHHHHHHHHHC----C-------CEEEEEeCC
Confidence 45678889999999999999999987764 6 367777763
No 444
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=43.69 E-value=23 Score=37.79 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=26.9
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.||.|+|||+.|.++|.++... |.- +++++|.+
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~----g~~------~V~L~D~~ 42 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALR----ELA------DVVLYDVV 42 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH----TCC------EEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCC------eEEEEECC
Confidence 5899999999999999988764 631 38998874
No 445
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=43.48 E-value=20 Score=39.70 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=29.1
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+..+|||+|||.||+..|..|.+. +. ..+|.++|+..
T Consensus 10 ~~~~vvIIGgG~AGl~aA~~L~~~----~~-----g~~V~lie~~~ 46 (493)
T 1m6i_A 10 SHVPFLLIGGGTAAFAAARSIRAR----DP-----GARVLIVSEDP 46 (493)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHH----ST-----TCEEEEEESSS
T ss_pred CcCCEEEECChHHHHHHHHHHHhc----CC-----CCeEEEEeCCC
Confidence 346899999999999999987654 21 35799999864
No 446
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=43.43 E-value=17 Score=40.22 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=26.9
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+++|+|||.||+..|..+.+. | .++.++|+.
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~----g-------~~V~liE~~ 34 (500)
T 1onf_A 3 YDLIVIGGGSGGMAAARRAARH----N-------AKVALVEKS 34 (500)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT----T-------CCEEEEESS
T ss_pred cCEEEECCCHHHHHHHHHHHHC----C-------CcEEEEeCC
Confidence 5799999999999999987653 5 368999985
No 447
>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}
Probab=43.40 E-value=32 Score=37.61 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=42.5
Q ss_pred CCcCCCceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchhhccccCCCceEEee
Q psy14377 702 KTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQG 780 (848)
Q Consensus 702 ~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 780 (848)
+..|.+.++.|+|.|.- |-.+|+.+..++. ++...| +..........|.. .-.+++.+.++|+.+-.
T Consensus 171 ~~~l~gktvGIIGlG~I--G~~vA~~l~~fG~-~V~~~d-------~~~~~~~~~~~g~~--~~~l~ell~~aDvV~l~ 237 (365)
T 4hy3_A 171 ARLIAGSEIGIVGFGDL--GKALRRVLSGFRA-RIRVFD-------PWLPRSMLEENGVE--PASLEDVLTKSDFIFVV 237 (365)
T ss_dssp CCCSSSSEEEEECCSHH--HHHHHHHHTTSCC-EEEEEC-------SSSCHHHHHHTTCE--ECCHHHHHHSCSEEEEC
T ss_pred ccccCCCEEEEecCCcc--cHHHHHhhhhCCC-EEEEEC-------CCCCHHHHhhcCee--eCCHHHHHhcCCEEEEc
Confidence 45688999999999999 9999999876653 332222 22211122233432 22567777788877643
No 448
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=43.36 E-value=21 Score=38.26 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=27.9
Q ss_pred CCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 238 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 238 l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
++..+++|+|||.+|.+++..+... | . +++.+|+
T Consensus 165 l~~~~VlViGaGgvG~~aa~~a~~~----G------a-~V~v~dr 198 (361)
T 1pjc_A 165 VKPGKVVILGGGVVGTEAAKMAVGL----G------A-QVQIFDI 198 (361)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHT----T------C-EEEEEES
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC----C------C-EEEEEeC
Confidence 6678999999999999999887654 7 3 6888776
No 449
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=43.35 E-value=21 Score=38.85 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=27.5
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+..++|+|||.||+..|..+.+. | .++.++|+.
T Consensus 3 ~~DVvVIGgG~aGl~aA~~la~~----G-------~~V~liEk~ 35 (476)
T 3lad_A 3 KFDVIVIGAGPGGYVAAIKSAQL----G-------LKTALIEKY 35 (476)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHH----T-------CCEEEEECC
T ss_pred cCCEEEECcCHHHHHHHHHHHhC----C-------CEEEEEeCC
Confidence 45799999999999999987764 6 368899875
No 450
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=43.32 E-value=25 Score=38.38 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=30.1
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
.+..-+++++|||..|.++++.+.. .|. ++|+++|+
T Consensus 164 ~l~g~~VlIiGaG~iG~~~a~~l~~----~G~------~~V~v~~r 199 (404)
T 1gpj_A 164 SLHDKTVLVVGAGEMGKTVAKSLVD----RGV------RAVLVANR 199 (404)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHH----HCC------SEEEEECS
T ss_pred cccCCEEEEEChHHHHHHHHHHHHH----CCC------CEEEEEeC
Confidence 3677899999999999999998874 686 47888876
No 451
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=43.21 E-value=17 Score=39.41 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=27.4
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+|||+|||.||+..|..|.+.+ ..| -+|.++|+.
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~-~~g-------~~Vtlie~~ 39 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEAL-GSG-------HEVTLISAN 39 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHH-GGG-------SEEEEECSS
T ss_pred CcEEEECCcHHHHHHHHHHhccC-CCc-------CEEEEEeCC
Confidence 68999999999999999887632 123 478888875
No 452
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=43.19 E-value=16 Score=39.66 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=26.6
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+++|+|||.||+..|..+.+. | .++.++|+.
T Consensus 4 ~dvvIIGgG~aGl~aA~~l~~~----g-------~~V~lie~~ 35 (455)
T 1ebd_A 4 TETLVVGAGPGGYVAAIRAAQL----G-------QKVTIVEKG 35 (455)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT----T-------CCEEEEESS
T ss_pred CCEEEECCCHHHHHHHHHHHhC----C-------CeEEEEECC
Confidence 5799999999999999877653 6 368999985
No 453
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=43.11 E-value=17 Score=39.65 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=27.0
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+.+++|+|||.||+..|..+.+. |. ++.++|+.
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~----G~-------~V~liE~~ 35 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQL----GL-------STAIVEPK 35 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT----TC-------CEEEECSS
T ss_pred cCCEEEECCCHHHHHHHHHHHhC----CC-------eEEEEeCC
Confidence 45799999999999999876653 63 68899885
No 454
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=42.99 E-value=19 Score=39.19 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=27.5
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCCc
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 59 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskGv 59 (848)
+..|||+|||.||+++|-.+... ..|+ ++.++|+...
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~--~~G~-------~V~LiEk~~~ 115 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTL--RPDL-------RITIVEAGVA 115 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHH--CTTS-------CEEEEESSSS
T ss_pred cCCEEEECccHHHHHHHHHHHhc--CCCC-------EEEEEeCCCc
Confidence 45799999999999999877641 0264 6888887543
No 455
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=42.90 E-value=19 Score=36.83 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=29.1
Q ss_pred cCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 237 ~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
+|++.++||+|+|..|...+++|..+ | -++.+++.
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~----G-------A~VtVvap 62 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQE----G-------AAITVVAP 62 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGG----C-------CCEEEECS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC----C-------CEEEEECC
Confidence 57889999999999999999988765 6 35777775
No 456
>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Probab=42.88 E-value=61 Score=33.94 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.++.+++..+. +....+|.|+|+|..|..++..+... .| .++++++|+
T Consensus 121 a~~~la~~~la--~~~~~~igiIG~G~~g~~~a~~l~~~---~g------~~~V~v~dr 168 (312)
T 2i99_A 121 AVSAIATKFLK--PPSSEVLCILGAGVQAYSHYEIFTEQ---FS------FKEVRIWNR 168 (312)
T ss_dssp HHHHHHHHHHS--CTTCCEEEEECCSHHHHHHHHHHHHH---CC------CSEEEEECS
T ss_pred HHHHHHHHHhC--CCCCcEEEEECCcHHHHHHHHHHHHh---CC------CcEEEEEcC
Confidence 45566664443 44668999999999999999877643 24 356777665
No 457
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=42.83 E-value=22 Score=37.76 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=26.4
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.||.|+|||+.|.++|..+... |+- +++++|.+
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~----g~~------~V~L~Di~ 47 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQK----DLG------DVYMFDII 47 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT----TCC------EEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCC------eEEEEECC
Confidence 5899999999999999877653 631 39998874
No 458
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=42.81 E-value=19 Score=39.38 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=27.0
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+.+++|+|||.||+..|..+.+. | .++.++|+.
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~----g-------~~V~lie~~ 37 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQL----G-------IPTVLVEGQ 37 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHH----T-------CCEEEECSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHC----C-------CEEEEEccC
Confidence 35799999999999999877654 6 369999873
No 459
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=42.79 E-value=19 Score=36.53 Aligned_cols=34 Identities=21% Similarity=0.149 Sum_probs=24.9
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+..-++|+|||.||+..|-.+.+ .| .++.++|+.
T Consensus 5 ~~yDVvIIGaGpAGlsAA~~lar----~g-------~~v~lie~~ 38 (304)
T 4fk1_A 5 KYIDCAVIGAGPAGLNASLVLGR----AR-------KQIALFDNN 38 (304)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHH----TT-------CCEEEEECS
T ss_pred CCcCEEEECCCHHHHHHHHHHHH----CC-------CCEEEEeCC
Confidence 34568999999999998865443 46 368888864
No 460
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=42.69 E-value=38 Score=36.16 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccch-HHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGE-ASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGa-Ag~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
-.|++..++-.+.+|+..++|++|+|. .|..+|.++... |. .++++++
T Consensus 144 p~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~----gA-------tVtv~h~ 192 (285)
T 3p2o_A 144 PLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNA----GA-------TVSVCHI 192 (285)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHT----TC-------EEEEECT
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHC----CC-------eEEEEeC
Confidence 667889999999999999999999976 899999987754 52 4777765
No 461
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*
Probab=42.61 E-value=48 Score=35.72 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.++.+++..+. +....++.|+|+|..|..++..+... .+ .++++++|+
T Consensus 115 a~s~laa~~la--~~~~~~v~iIGaG~~a~~~a~al~~~---~~------~~~V~V~~r 162 (350)
T 1x7d_A 115 ATSLMAAQALA--RPNARKMALIGNGAQSEFQALAFHKH---LG------IEEIVAYDT 162 (350)
T ss_dssp HHHHHHHHHHS--CTTCCEEEEECCSTTHHHHHHHHHHH---SC------CCEEEEECS
T ss_pred HHHHHHHHHhc--cccCCeEEEECCcHHHHHHHHHHHHh---CC------CcEEEEEcC
Confidence 45666666653 34568999999999999988766542 23 457887765
No 462
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=42.59 E-value=28 Score=38.39 Aligned_cols=53 Identities=26% Similarity=0.268 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHhhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 685 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 685 GTaaV~LAgllaAlr~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
.+|=-+++.+++..|-.+..|.+.++.|+|.|.- |-.+|+.+...+. ++..+|
T Consensus 97 ~VAE~~l~~lL~l~r~~g~~l~gktvGIIGlG~I--G~~vA~~l~a~G~-~V~~~d 149 (381)
T 3oet_A 97 AVVEYVFSALLMLAERDGFSLRDRTIGIVGVGNV--GSRLQTRLEALGI-RTLLCD 149 (381)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGCEEEEECCSHH--HHHHHHHHHHTTC-EEEEEC
T ss_pred hhHHHHHHHHHHHHHhcCCccCCCEEEEEeECHH--HHHHHHHHHHCCC-EEEEEC
Confidence 3455688999999999999999999999999999 9999999988775 444444
No 463
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=42.52 E-value=27 Score=39.36 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=29.7
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
...+|||+|||.||+..|..|.+. +- ..+|.++|+..-
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~----~~-----g~~V~vie~~~~ 72 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRL----SE-----EDEIIMVERGEY 72 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHH----CS-----SSEEEEECSSSC
T ss_pred cCCCEEEECCcHHHHHHHHHHHhh----Cc-----CCCEEEEECCCC
Confidence 347899999999999999987754 21 247899998754
No 464
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=42.51 E-value=17 Score=39.69 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=27.6
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+.+++|+|||.||+..|..+.+. | .++.++|+..
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~~----g-------~~V~liE~~~ 39 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQL----G-------FKTVCIEKNE 39 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT----T-------CCEEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHhC----C-------CeEEEEeCCC
Confidence 35799999999999999987654 6 3688998753
No 465
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=42.40 E-value=35 Score=36.65 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccc-hHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAG-EASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAG-aAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
-.|++-.++-.+.+++..++||+|+| ..|.-+|.++... | ..++++++
T Consensus 149 p~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~----g-------AtVtv~hs 197 (301)
T 1a4i_A 149 PKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWN----N-------ATVTTCHS 197 (301)
T ss_dssp HHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHT----T-------CEEEEECT
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhC----C-------CeEEEEEC
Confidence 56789999999999999999999999 5799999987753 5 35888764
No 466
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=42.33 E-value=21 Score=40.96 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=30.1
Q ss_pred CCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 238 LSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 238 l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
.++.+|+|+|||.||+..|-.|... |. ++.++|+.-.
T Consensus 21 M~~~DVvIVGgG~AGl~aA~~Lar~----G~-------~V~LiEr~~~ 57 (591)
T 3i3l_A 21 MTRSKVAIIGGGPAGSVAGLTLHKL----GH-------DVTIYERSAF 57 (591)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT----TC-------EEEEECSSCS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHcC----CC-------CEEEEcCCCC
Confidence 5568999999999999999877653 73 6899998743
No 467
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=42.20 E-value=18 Score=37.33 Aligned_cols=67 Identities=13% Similarity=-0.010 Sum_probs=41.3
Q ss_pred CceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchHHHhhhccccchhhccccCCCceEEeecC
Q psy14377 707 DNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSG 782 (848)
Q Consensus 707 d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s~ 782 (848)
..||.|+|+|.- |.++|..|...+. ++.+.| -.++........|.......++++++++|+.|-.-.
T Consensus 7 ~~~I~iIG~G~m--G~~~a~~l~~~G~-~V~~~d------r~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp 73 (303)
T 3g0o_A 7 DFHVGIVGLGSM--GMGAARSCLRAGL-STWGAD------LNPQACANLLAEGACGAAASAREFAGVVDALVILVV 73 (303)
T ss_dssp CCEEEEECCSHH--HHHHHHHHHHTTC-EEEEEC------SCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCS
T ss_pred CCeEEEECCCHH--HHHHHHHHHHCCC-eEEEEE------CCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECC
Confidence 358999999999 9999999999874 333333 111112223333443223456677788887775543
No 468
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=42.17 E-value=25 Score=37.50 Aligned_cols=48 Identities=21% Similarity=0.149 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHHHhh----------------hCCcCCCceEEecCcchhhHHHHHHHHHHHhcc
Q psy14377 684 QGTASVAVAGLLASLRI----------------TKTRLSDNTILFQGAGEGTASVAVAGLLASLRI 733 (848)
Q Consensus 684 QGTaaV~LAgllaAlr~----------------t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~ 733 (848)
+.+|=-+++.+|+..|- .+..|.+.++.|+|.|.- |-.+|+.+...+.
T Consensus 100 ~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIiG~G~I--G~~vA~~l~~~G~ 163 (315)
T 3pp8_A 100 LQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVL--GAKVAESLQAWGF 163 (315)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCCEEEECCSHH--HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHhcccCCCCCCCcCCCEEEEEeeCHH--HHHHHHHHHHCCC
Confidence 34555678888887763 256789999999999999 9999999987765
No 469
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=42.11 E-value=36 Score=36.50 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhh----------------hCCcCCCceEEecCcchhhHHHHHHHHHHHhcc
Q psy14377 687 ASVAVAGLLASLRI----------------TKTRLSDNTILFQGAGEGTASVAVAGLLASLRI 733 (848)
Q Consensus 687 aaV~LAgllaAlr~----------------t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~ 733 (848)
|=-+++.+|+..|- .+..|.+.++.|+|.|.- |-.+|+.+...+.
T Consensus 104 AE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIIGlG~I--G~~vA~~l~~~G~ 164 (324)
T 3hg7_A 104 SEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKGRTLLILGTGSI--GQHIAHTGKHFGM 164 (324)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCEEEEECCSHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhChHHHHHHHhhCCCcCCCCcccccceEEEEEECHH--HHHHHHHHHhCCC
Confidence 33466666666552 356899999999999999 9999999988765
No 470
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=42.06 E-value=25 Score=36.34 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=27.1
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
..||.|+|||+.|..+|..+... |. ..+++++|++
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~----g~-----~~~V~l~d~~ 41 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQR----GI-----AREIVLEDIA 41 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT----TC-----CSEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC----CC-----CCEEEEEeCC
Confidence 36899999999999999877653 53 1378888874
No 471
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=42.03 E-value=22 Score=39.20 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=27.5
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
..+|+|+|||.||+..|..|.+. | .++.++++..
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~----G-------~~V~vlE~~~ 37 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDS----G-------LNVVVLEARD 37 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHT----T-------CCEEEECSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHC----C-------CCEEEEeCCC
Confidence 35799999999999999987764 6 3688888764
No 472
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=42.01 E-value=22 Score=39.08 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=27.2
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
+..++|+|||.||+..|..+.+. | .++.++|++
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~~----G-------~~V~liEk~ 58 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGAL----G-------KRVAIAEEY 58 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHT----T-------CCEEEEESS
T ss_pred CCCEEEECcCHHHHHHHHHHHhC----c-------CEEEEEeCC
Confidence 46899999999999999887654 6 368899873
No 473
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=41.90 E-value=24 Score=39.20 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=26.5
Q ss_pred CceEEEeccchHHHHHHHHHHH-HHHhcCCChhhhcCcEEEEc
Q psy14377 240 DNTILFQGAGEASLGIADLCVM-AMQKEGTSEQDARDKIWMVD 281 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~-~m~~~G~s~~eA~~~i~~vD 281 (848)
+.+++|+|||.||+..|..+.+ . | .++.++|
T Consensus 7 ~~dvvVIGgG~aGl~aA~~la~~~----G-------~~V~liE 38 (495)
T 2wpf_A 7 AFDLVVIGAGSGGLEAGWNAATLY----G-------KRVAVVD 38 (495)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHH----C-------CCEEEEE
T ss_pred ccCEEEECCChhHHHHHHHHHHhc----C-------CeEEEEe
Confidence 4689999999999999998876 4 6 3688998
No 474
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=41.70 E-value=19 Score=39.14 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=18.8
Q ss_pred ceEEEeccchHHHHHHHHHHHH
Q psy14377 241 NTILFQGAGEASLGIADLCVMA 262 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~ 262 (848)
.+|||+|||-+|+..|-.|.++
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~ 23 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAA 23 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHT
T ss_pred CCEEEECCcHHHHHHHHHHHHC
Confidence 4799999999999999876654
No 475
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=41.68 E-value=40 Score=35.97 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccch-HHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGE-ASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGa-Ag~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
-.|++..++-.+.+|+..++|++|+|. .|..+|.++... |. .++++++
T Consensus 145 p~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~----gA-------tVtv~hs 193 (285)
T 3l07_A 145 PKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNA----KA-------TVTTCHR 193 (285)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHT----TC-------EEEEECT
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHC----CC-------eEEEEeC
Confidence 567888999999999999999999976 899999987753 52 4777754
No 476
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=41.66 E-value=20 Score=38.19 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=26.6
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.||.|+|||..|.++|.++... |+- +++++|.+
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~----g~~------~v~L~Di~ 37 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQK----NLG------DVVLFDIV 37 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT----TCC------EEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCC------eEEEEeCC
Confidence 5899999999999999887754 641 29999874
No 477
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=41.46 E-value=24 Score=39.21 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=29.6
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
++++.+|+++|+|..|.+.+++|.. .|. +|.++|.
T Consensus 9 ~l~~~~vlVvGgG~va~~k~~~L~~----~ga-------~V~vi~~ 43 (457)
T 1pjq_A 9 QLRDRDCLIVGGGDVAERKARLLLE----AGA-------RLTVNAL 43 (457)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHH----TTB-------EEEEEES
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHh----CcC-------EEEEEcC
Confidence 4566789999999999999999984 673 7889886
No 478
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=41.42 E-value=22 Score=39.33 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=28.4
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCCc
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGL 285 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kGL 285 (848)
+..|+|+|||.+|+++|..+... |+ ++.++|+..+
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~~----G~-------~V~llE~~~~ 37 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAGR----GL-------SVLMLEAQDL 37 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT----TC-------CEEEECSSST
T ss_pred cCCEEEECcCHHHHHHHHHHHhC----CC-------CEEEEECCCC
Confidence 45799999999999999987654 74 5899998653
No 479
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=41.42 E-value=21 Score=40.02 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=28.7
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
..+|||+|||.||+..|-.|.+.. ..| -+|.++|+.-
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~~-~~G-------~~V~liE~~~ 61 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKAL-QGT-------ADITLLQAPD 61 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHT-TTS-------SEEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhhc-CCC-------CcEEEEeCCC
Confidence 468999999999999999887631 025 3799999854
No 480
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=41.19 E-value=40 Score=36.18 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCcCCCceEEEeccch-HHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 224 VAGLLASLRITKTRLSDNTILFQGAGE-ASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 224 lAgll~Al~~tg~~l~d~riv~~GAGa-Ag~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
-.|++..++-.+.+|+..++||+|+|. .|..+|.++... |. .++++++
T Consensus 149 p~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~----gA-------tVtv~~~ 197 (300)
T 4a26_A 149 AKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKE----NA-------TVTIVHS 197 (300)
T ss_dssp HHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHT----TC-------EEEEECT
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHC----CC-------eEEEEeC
Confidence 567888999999999999999999876 899999987754 52 4777765
No 481
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B
Probab=41.18 E-value=39 Score=36.23 Aligned_cols=30 Identities=13% Similarity=0.071 Sum_probs=26.6
Q ss_pred CCcCCCceEEecCcchhhHHHHHHHHHH-Hhcc
Q psy14377 702 KTRLSDNTILFQGAGEGTASVAVAGLLA-SLRI 733 (848)
Q Consensus 702 ~~~l~d~riv~~GAG~A~~g~giA~ll~-~~~~ 733 (848)
+..|.+.++.|+|.|.- |-.+|+.+. ..+.
T Consensus 158 ~~~l~g~~vgIIG~G~I--G~~vA~~l~~~~G~ 188 (348)
T 2w2k_A 158 AHNPRGHVLGAVGLGAI--QKEIARKAVHGLGM 188 (348)
T ss_dssp CCCSTTCEEEEECCSHH--HHHHHHHHHHTTCC
T ss_pred CcCCCCCEEEEEEECHH--HHHHHHHHHHhcCC
Confidence 56799999999999999 999999998 6653
No 482
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=41.15 E-value=29 Score=37.28 Aligned_cols=35 Identities=14% Similarity=0.362 Sum_probs=30.0
Q ss_pred CCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcC
Q psy14377 11 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 56 (848)
Q Consensus 11 ~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Ds 56 (848)
.+...+++|+|+|..|.++++++.. +|. +|+++|+
T Consensus 163 ~l~~~~V~ViGaG~iG~~~a~~l~~----~Ga-------~V~~~d~ 197 (369)
T 2eez_A 163 GVAPASVVILGGGTVGTNAAKIALG----MGA-------QVTILDV 197 (369)
T ss_dssp BBCCCEEEEECCSHHHHHHHHHHHH----TTC-------EEEEEES
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHh----CCC-------EEEEEEC
Confidence 4778899999999999999998884 784 6888886
No 483
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Probab=41.10 E-value=31 Score=36.49 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=25.5
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
.++++|.|||..|..++.++... | . +++.+|+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~----G------a-~Vi~~~~ 212 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY----G------L-EVWMANR 212 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH----T------C-EEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHhC----C------C-EEEEEeC
Confidence 89999999998888888776644 7 3 6888765
No 484
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=41.05 E-value=23 Score=41.62 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=28.4
Q ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 10 TRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 10 K~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+.-.+..|||+|||.||+++|-.+. +.|+ ++.++++.
T Consensus 17 ~~~~~yDVIVIGgG~AGl~AAlaLA----r~G~-------kVlLIEk~ 53 (641)
T 3cp8_A 17 RGSHMYDVIVVGAGHAGCEAALAVA----RGGL-------HCLLITSD 53 (641)
T ss_dssp ---CCEEEEEECCSHHHHHHHHHHH----HTTC-------CEEEEESC
T ss_pred cccCcCCEEEECccHHHHHHHHHHH----HCCC-------cEEEEEec
Confidence 3445678999999999999998776 4674 68888875
No 485
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=40.85 E-value=44 Score=36.20 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhh---------------------hCCcCCCceEEecCcchhhHHHHHHHHHHHhcc
Q psy14377 686 TASVAVAGLLASLRI---------------------TKTRLSDNTILFQGAGEGTASVAVAGLLASLRI 733 (848)
Q Consensus 686 TaaV~LAgllaAlr~---------------------t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~ 733 (848)
+|=-+++-+|+..|- .+..|.+.++.|+|.|.- |-.+|+.+...+.
T Consensus 131 vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~I--G~~vA~~l~~~G~ 197 (345)
T 4g2n_A 131 CAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRI--GRAIATRARGFGL 197 (345)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHH--HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeChh--HHHHHHHHHHCCC
Confidence 445577777776653 256799999999999999 9999999987664
No 486
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}
Probab=40.82 E-value=23 Score=40.31 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=30.3
Q ss_pred CceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 14 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 14 d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
+.|||++|||..|-+++++|.+ ..++.. .+|++.|+.
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~---~~dv~~----~~I~vaD~~ 49 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFE---KFDIKP----SQVTIIAAE 49 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH---HBCCCG----GGEEEEESS
T ss_pred CCCEEEECcCHHHHHHHHHHHh---CCCCce----eEEEEeccc
Confidence 5789999999999999999986 566653 478888863
No 487
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=40.75 E-value=22 Score=39.91 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=28.7
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
.+.+++|+|||.+|+..|..|.+. |+ ++.++|+..
T Consensus 15 ~~~dVvIIGaG~aGl~aA~~L~~~----G~-------~v~iiE~~~ 49 (542)
T 1w4x_A 15 EEVDVLVVGAGFSGLYALYRLREL----GR-------SVHVIETAG 49 (542)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHT----TC-------CEEEECSSS
T ss_pred CCCCEEEECccHHHHHHHHHHHhC----CC-------CEEEEeCCC
Confidence 456899999999999999987754 73 688898764
No 488
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=40.70 E-value=7.5 Score=35.58 Aligned_cols=69 Identities=10% Similarity=0.142 Sum_probs=40.8
Q ss_pred CceEEecCcchhhHHHHHHHHHHHhcccccccccCceecCCCCCCchH-HHhhhcc-ccchhhccccCCCceEEeecCCC
Q psy14377 707 DNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTAS-VAIAGLL-ASLRITKTRLSDNTILFQGSGEG 784 (848)
Q Consensus 707 d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d~g~i~~~r~~~~~~-~~~~~~~-~~~r~~~~~~~~~~~~~~~s~~~ 784 (848)
+.+++|+|+|.. |..+++.+...+.+ +.+.+. .++.... .+..|.. ...-.+++.+.++|+.|-..+.+
T Consensus 21 ~~~v~iiG~G~i--G~~~a~~l~~~g~~-v~v~~r------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~ 91 (144)
T 3oj0_A 21 GNKILLVGNGML--ASEIAPYFSYPQYK-VTVAGR------NIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK 91 (144)
T ss_dssp CCEEEEECCSHH--HHHHGGGCCTTTCE-EEEEES------CHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS
T ss_pred CCEEEEECCCHH--HHHHHHHHHhCCCE-EEEEcC------CHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC
Confidence 779999999999 99888877665543 443331 1111111 1122321 12234456678899999876655
No 489
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=40.63 E-value=24 Score=36.37 Aligned_cols=38 Identities=18% Similarity=-0.021 Sum_probs=27.4
Q ss_pred eEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 242 TILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 242 riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
.|+|+|||.+|+.+|-.|.+. |.+. --..++.++|+.-
T Consensus 2 dVvIIGgGi~Gls~A~~La~~----G~~~-~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHER----YHSV-LQPLDIKVYADRF 39 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHH----HTTT-SSSCEEEEEESSC
T ss_pred cEEEECCCHHHHHHHHHHHHh----cccc-CCCceEEEEECCC
Confidence 589999999999999887764 4110 0014799999864
No 490
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=40.53 E-value=29 Score=34.78 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=28.4
Q ss_pred cCCCCCCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCC
Q psy14377 8 TKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 57 (848)
Q Consensus 8 ~gK~i~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~Dsk 57 (848)
...++...||.|+|+|.-|.++|+.|.. .|. +|+++|+.
T Consensus 13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~----~G~-------~V~~~~r~ 51 (245)
T 3dtt_A 13 ENLYFQGMKIAVLGTGTVGRTMAGALAD----LGH-------EVTIGTRD 51 (245)
T ss_dssp ------CCEEEEECCSHHHHHHHHHHHH----TTC-------EEEEEESC
T ss_pred cccccCCCeEEEECCCHHHHHHHHHHHH----CCC-------EEEEEeCC
Confidence 4567888999999999999999998884 563 68888874
No 491
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=40.48 E-value=16 Score=37.71 Aligned_cols=35 Identities=20% Similarity=0.075 Sum_probs=26.2
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+|+|+|||.+|+.+|..|.+.. ..| -++.++|+.
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~-~~G-------~~V~v~Ek~ 36 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQT-SGP-------LYLAVWDKA 36 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC--CC-------EEEEEECSS
T ss_pred CcEEEECCcHHHHHHHHHHHhhc-cCC-------ceEEEEECC
Confidence 37999999999999999876400 035 368888875
No 492
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=40.44 E-value=21 Score=38.95 Aligned_cols=34 Identities=29% Similarity=0.274 Sum_probs=27.3
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+..++|+|||.||+..|..+.+. | .++.++|++.
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~----G-------~~V~liEk~~ 37 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKA----K-------YNVLMADPKG 37 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT----T-------CCEEEECTTS
T ss_pred cceEEEECCCHHHHHHHHHHHhC----C-------CeEEEEECCC
Confidence 35799999999999999887653 6 3688999653
No 493
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=40.40 E-value=30 Score=36.63 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=28.2
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.||.|+|||..|.++|..++.. |+ ...++|+|.+
T Consensus 15 ~kV~ViGaG~vG~~~a~~l~~~----g~-----~~ev~L~Di~ 48 (303)
T 2i6t_A 15 NKITVVGGGELGIACTLAISAK----GI-----ADRLVLLDLS 48 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH----TC-----CSEEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CC-----CCEEEEEcCC
Confidence 6899999999999999988654 53 3689999974
No 494
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=40.36 E-value=24 Score=37.42 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=27.3
Q ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 239 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 239 ~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
++.+|+|+|||.+|+..|..|.+. | ..++.++++.
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~----g------~~~v~v~E~~ 39 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQA----G------FHDYTILERT 39 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHT----T------CCCEEEECSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC----C------CCcEEEEECC
Confidence 457899999999999999987654 5 1457777764
No 495
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=40.35 E-value=18 Score=39.11 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=27.6
Q ss_pred CceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 240 DNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 240 d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
+..++|+|||.||+..|..+.+. | .++.++|+.-
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~----G-------~~V~vlEk~~ 37 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKL----G-------KSVTVFDNGK 37 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHT----T-------CCEEEECSSS
T ss_pred CCCEEEECCcHHHHHHHHHHHhC----C-------CCEEEEeCCC
Confidence 45799999999999999887653 7 3688999864
No 496
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=40.21 E-value=27 Score=37.04 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCcCCCceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcC
Q psy14377 226 GLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282 (848)
Q Consensus 226 gll~Al~~tg~~l~d~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~ 282 (848)
..+.+++..+.....++++|.|||..|..++.++... | . +++.+|+
T Consensus 174 ta~~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~----G------a-~Vi~~~~ 219 (366)
T 1yqd_A 174 TVYSPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAF----G------S-KVTVIST 219 (366)
T ss_dssp HHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHT----T------C-EEEEEES
T ss_pred HHHHHHHhcCcCCCCCEEEEECCCHHHHHHHHHHHHC----C------C-EEEEEeC
Confidence 3455666555444789999999999888888765543 6 2 5777654
No 497
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=40.21 E-value=21 Score=37.89 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=28.2
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~k 283 (848)
.+|+|+|||-+|+..|..|.++ |.. +....++.++|+.
T Consensus 6 ~dVvIIGaGiaGLsaA~~L~~~----G~~-~~~~~~V~vlEa~ 43 (470)
T 3i6d_A 6 KHVVIIGGGITGLAAAFYMEKE----IKE-KNLPLELTLVEAS 43 (470)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH----HTT-TTCSEEEEEECSS
T ss_pred CcEEEECCCHHHHHHHHHHHHh----ccc-cCCCCCEEEEECC
Confidence 6899999999999999998875 510 0012478888875
No 498
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=40.18 E-value=28 Score=42.15 Aligned_cols=35 Identities=14% Similarity=0.313 Sum_probs=28.8
Q ss_pred CCceEEEeccchhHHHHHHHHHHHHHhcCCCccccCCeEEEEcCCC
Q psy14377 13 SDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 58 (848)
Q Consensus 13 ~d~kiV~~GAGaA~ia~a~L~~~am~~~G~~~e~~~~ni~m~DskG 58 (848)
...+|+|+|||.||++||..|.. .|. ++.+++...
T Consensus 277 ~~~~v~viG~G~aGl~~A~~l~~----~g~-------~v~v~E~~~ 311 (852)
T 2xag_A 277 KTGKVIIIGSGVSGLAAARQLQS----FGM-------DVTLLEARD 311 (852)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH----TTC-------EEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHH----CCC-------cEEEEEecC
Confidence 35689999999999999998874 674 688888753
No 499
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*
Probab=40.07 E-value=17 Score=41.50 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=32.8
Q ss_pred hhhCCcCCCceEEecCcchhhHHHHHHHHHHHhccccccccc
Q psy14377 699 RITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSD 740 (848)
Q Consensus 699 r~t~~~l~d~riv~~GAG~A~~g~giA~ll~~~~~~~~~~~d 740 (848)
+.++..+.+.+++|+|.|.- |-++|+.+...++ ++...|
T Consensus 269 ~~~g~~L~GktVgIIG~G~I--G~~vA~~l~~~G~-~V~v~d 307 (494)
T 3d64_A 269 RATDVMIAGKIAVVAGYGDV--GKGCAQSLRGLGA-TVWVTE 307 (494)
T ss_dssp HHHCCCCTTCEEEEECCSHH--HHHHHHHHHTTTC-EEEEEC
T ss_pred hccccccCCCEEEEEccCHH--HHHHHHHHHHCCC-EEEEEe
Confidence 56788999999999999999 9999999987764 444444
No 500
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=40.02 E-value=22 Score=38.63 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=27.1
Q ss_pred ceEEEeccchHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcCCC
Q psy14377 241 NTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284 (848)
Q Consensus 241 ~riv~~GAGaAg~gia~ll~~~m~~~G~s~~eA~~~i~~vD~kG 284 (848)
..|+|+|||.||+..|-.+.+ .| .++.++|+..
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~----~G-------~~V~llEk~~ 59 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAE----EG-------ANVLLLDKGN 59 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHH----TT-------CCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHH----CC-------CCEEEEECCC
Confidence 579999999999999987765 36 3689999864
Done!