RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14377
(848 letters)
>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional.
Length = 581
Score = 418 bits (1076), Expect = e-136
Identities = 143/226 (63%), Positives = 175/226 (77%), Gaps = 2/226 (0%)
Query: 505 EYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVT 564
+ + EL+PIVYTPTVG ACQKYG +FRRPRGL+IS+ DKG + +L+NWPE D++ IVVT
Sbjct: 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVT 178
Query: 565 DGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGL 624
DGERILGLGDLG GMGIPVGKL LYTA GI+P LP+ +DVGTN ++LL+DP YIGL
Sbjct: 179 DGERILGLGDLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGL 238
Query: 625 RQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQ 684
RQ R TG+ YD+ ++EFM+AV R+G VL+QFEDFAN +AFR L YR + FNDDIQ
Sbjct: 239 RQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYRTTHLCFNDDIQ 298
Query: 685 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLAS 730
GTA+VA+AGLLA+LR T L+D ILF GAGE A +A L+A
Sbjct: 299 GTAAVALAGLLAALRATGGDLADQRILFAGAGE--AGTGIAELIAL 342
Score = 138 bits (349), Expect = 5e-34
Identities = 60/121 (49%), Positives = 74/121 (61%), Gaps = 22/121 (18%)
Query: 406 SLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTS 465
SL A+ IKP T+ +G + + FT ++L+ MA+ N+RPIIFALSNPTS
Sbjct: 392 SLLEAVKAIKP------TVLIGL-----SGVGGTFTKEVLEAMASLNERPIIFALSNPTS 440
Query: 466 KAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQ---EYVVELMPIVYTPTVGLA 522
KAECTAE+AY T GR +FASGSPFDPV Y GKTF PGQ Y+ P +GL
Sbjct: 441 KAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIF--------PGIGLG 492
Query: 523 C 523
Sbjct: 493 A 493
Score = 125 bits (315), Expect = 8e-30
Identities = 51/107 (47%), Positives = 69/107 (64%), Gaps = 6/107 (5%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQK-EGTSEQDARDKIWMVDSKGL 59
LLA+LR T L+D ILF GAGEA GIA+L +AM + G SE++AR +IW+VDSKGL
Sbjct: 308 LLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGL 367
Query: 60 IVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIEELKGLS 106
+ K R + + K +A H P +L + VK +KP++LI GLS
Sbjct: 368 VTKSRKD-SLQPFKKPFAHDHEPGASLLEAVKAIKPTVLI----GLS 409
Score = 123 bits (311), Expect = 3e-29
Identities = 40/57 (70%), Positives = 46/57 (80%)
Query: 373 KTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
+ D++ IVVTDGERILGLGDLG GMGIPVGKL LYTA GI+P LP+ +DVGTN
Sbjct: 169 ERDVQVIVVTDGERILGLGDLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTN 225
Score = 119 bits (300), Expect = 6e-28
Identities = 49/108 (45%), Positives = 65/108 (60%), Gaps = 11/108 (10%)
Query: 220 CVND---------VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQK-EGTS 269
C ND +AGLLA+LR T L+D ILF GAGEA GIA+L +AM + G S
Sbjct: 292 CFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGIS 351
Query: 270 EQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVK 317
E++AR +IW+VDSKGL+ K R + + K +A H P +L + VK
Sbjct: 352 EEEARKRIWLVDSKGLVTKSRKD-SLQPFKKPFAHDHEPGASLLEAVK 398
Score = 94.6 bits (236), Expect = 5e-20
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 142 ASLGIADLCVMAMQK-EGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPV 200
A GIA+L +AM + G SE++AR +IW+VDSKGL+ K R + + K +A H P
Sbjct: 332 AGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKD-SLQPFKKPFAHDHEPG 390
Query: 201 KNLADVVKTVKPSILIGESCV 221
+L + VK +KP++LIG S V
Sbjct: 391 ASLLEAVKAIKPTVLIGLSGV 411
Score = 71.5 bits (176), Expect = 9e-13
Identities = 23/32 (71%), Positives = 28/32 (87%)
Query: 817 DRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
+RNERLFYR+L + + EL+PIVYTPTVG ACQ
Sbjct: 107 ERNERLFYRVLIDNIEELLPIVYTPTVGEACQ 138
Score = 63.0 bits (154), Expect = 4e-10
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 289 DRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLH 348
++P Y P N G+AF+ ER LG+ GLLP AV SQ+ Q+
Sbjct: 30 EQPVTPWVRVASGYDLLRDPRYN------KGLAFTETERDRLGLRGLLPPAVLSQELQVK 83
Query: 349 LCKLNVDRYEDPLNKYIYLQAL 370
N+ E PL KY L L
Sbjct: 84 RFMENLRALESPLAKYRALMDL 105
Score = 55.3 bits (134), Expect = 1e-07
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 784 GTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
GTA+VA+AG+LA+LR T L+D ILF GAGE
Sbjct: 299 GTAAVALAGLLAALRATGGDLADQRILFAGAGE 331
Score = 54.9 bits (133), Expect = 1e-07
Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLAS 796
GTA+VA+AGLLA+LR T L+D ILF G+GE A +A ++A
Sbjct: 299 GTAAVALAGLLAALRATGGDLADQRILFAGAGE--AGTGIAELIAL 342
>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional.
Length = 563
Score = 391 bits (1006), Expect = e-126
Identities = 127/227 (55%), Positives = 168/227 (74%), Gaps = 3/227 (1%)
Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
+++ E+MPI+YTPTVG AC+++ I+RRPRGLFIS D+ I ++L+N P DI+ IVV
Sbjct: 93 SDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVV 152
Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
TDGERILG+GD G GMGIP+GKLSLYTA GI P + LP+ LDVGTN +QLL+DPLY+G
Sbjct: 153 TDGERILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLG 212
Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
R R G+ YD+F++EF+QAV R+ + L+QFEDFA +A R L+ YR+ C FNDDI
Sbjct: 213 WRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKNARRILERYRDEICTFNDDI 271
Query: 684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLAS 730
QGT +V +AGLLA+L+IT LSD I+F GA G+A +A + +
Sbjct: 272 QGTGAVTLAGLLAALKITGEPLSDQRIVFLGA--GSAGCGIADQIVA 316
Score = 123 bits (312), Expect = 2e-29
Identities = 41/59 (69%), Positives = 46/59 (77%)
Query: 371 AVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
A DI+ IVVTDGERILG+GD G GMGIP+GKLSLYTA GI P + LP+ LDVGTN
Sbjct: 142 APNRDIKLIVVTDGERILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTN 200
Score = 121 bits (306), Expect = 1e-28
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 11/108 (10%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
LLA+L+IT LSD I+F GAG A GIAD V AM +EG SE++AR + +MVD +GL+
Sbjct: 282 LLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLL 341
Query: 61 VKDRPEGGVTGHKVHYAKKHAPVKN---------LADVVKTVKPSILI 99
D P + + YA+K + + L +VV+ VKP++LI
Sbjct: 342 TDDMP--DLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLI 387
Score = 117 bits (295), Expect = 2e-27
Identities = 40/68 (58%), Positives = 48/68 (70%)
Query: 437 PQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYK 496
P FT +I+K+MAA +RPIIF LSNPTS+AE T E TDGR + A+GSPF PV Y
Sbjct: 393 PGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYN 452
Query: 497 GKTFTPGQ 504
GKT+ GQ
Sbjct: 453 GKTYPIGQ 460
Score = 112 bits (283), Expect = 1e-25
Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 20/117 (17%)
Query: 220 CVND---------VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSE 270
ND +AGLLA+L+IT LSD I+F GAG A GIAD V AM +EG SE
Sbjct: 266 TFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSE 325
Query: 271 QDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKN---------LADVVKT 318
++AR + +MVD +GL+ D P + + YA+K + + L +VV+
Sbjct: 326 EEARKRFFMVDRQGLLTDDMP--DLLDFQKPYARKREELADWDTEGDVISLLEVVRN 380
Score = 92.5 bits (231), Expect = 2e-19
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 11/87 (12%)
Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVK 201
A GIAD V AM +EG SE++AR + +MVD +GL+ D P + + YA+K +
Sbjct: 306 AGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMP--DLLDFQKPYARKREELA 363
Query: 202 N---------LADVVKTVKPSILIGES 219
+ L +VV+ VKP++LIG S
Sbjct: 364 DWDTEGDVISLLEVVRNVKPTVLIGVS 390
Score = 72.9 bits (180), Expect = 3e-13
Identities = 23/32 (71%), Positives = 29/32 (90%)
Query: 817 DRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
DRNE LFYRLLS+++ E+MPI+YTPTVG AC+
Sbjct: 82 DRNETLFYRLLSDHLEEMMPIIYTPTVGEACE 113
Score = 69.8 bits (172), Expect = 3e-12
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 319 GMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQAL 370
G AF+ EER+ G+ GLLP AV++ +EQ L K+IYL+ L
Sbjct: 29 GTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNL 80
Score = 54.0 bits (131), Expect = 2e-07
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 783 EGTASVAVAGVLASLRITKTRLSDNTILFQGAG 815
+GT +V +AG+LA+L+IT LSD I+F GAG
Sbjct: 272 QGTGAVTLAGLLAALKITGEPLSDQRIVFLGAG 304
Score = 50.1 bits (121), Expect = 4e-06
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVA 791
+GT +V +AGLLA+L+IT LSD I+F G+ G+A +A
Sbjct: 272 QGTGAVTLAGLLAALKITGEPLSDQRIVFLGA--GSAGCGIA 311
>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional.
Length = 559
Score = 320 bits (823), Expect = 1e-99
Identities = 117/226 (51%), Positives = 163/226 (72%), Gaps = 3/226 (1%)
Query: 506 YVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTD 565
Y+ EL+PI+YTPTVG ACQ Y +F+R RGL++S KG I E+L+NWP ++ IV+TD
Sbjct: 97 YLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITD 156
Query: 566 GERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLR 625
G RILGLGDLGA GMGI +GKLSLY A GI P + LP+ LDVGTN ++LL+DPLY+GLR
Sbjct: 157 GSRILGLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLR 216
Query: 626 QRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQG 685
++R Y + ++EFM+AV +R+ + ++QFEDF+N+ F L+ Y+N+Y FNDDIQG
Sbjct: 217 EKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQG 275
Query: 686 TASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
T +V AG L +L+++ + I+F GA G+A++ VA +A L
Sbjct: 276 TGAVIAAGFLNALKLSGVPPEEQRIVFFGA--GSAAIGVANNIADL 319
Score = 132 bits (335), Expect = 2e-32
Identities = 62/172 (36%), Positives = 79/172 (45%), Gaps = 61/172 (35%)
Query: 319 GMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQAL-------- 370
G AF+ EER+ LGI GLLP V++ ++Q+ +R E P+NKY +L+ +
Sbjct: 31 GTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLF 90
Query: 371 -----------------------------------------AVKTDIRAIV--------- 380
A K IR I+
Sbjct: 91 YALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVD 150
Query: 381 ---VTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
+TDG RILGLGDLGA GMGI +GKLSLY A GI P + LP+ LDVGTN
Sbjct: 151 VIVITDGSRILGLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTN 202
Score = 117 bits (295), Expect = 2e-27
Identities = 50/94 (53%), Positives = 59/94 (62%), Gaps = 11/94 (11%)
Query: 434 AAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPV 493
+ + VFT +++K MA+ +RPIIF LSNPTSKAECTAE AY T+GR + ASGSPF PV
Sbjct: 389 SGVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPV 448
Query: 494 TYKGKTFTPGQE---YVVELMPIVYTPTVGLACQ 524
T GKT P Q YV P VGL C
Sbjct: 449 TLNGKTIQPSQGNNLYVF--------PGVGLGCA 474
Score = 89.7 bits (223), Expect = 2e-18
Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
L +L+++ + I+F GAG A++G+A+ + G + ++A ++VDSKGL+
Sbjct: 284 FLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLV 343
Query: 61 VKDRPEGGVTGHKVHYAKKHAP-----VKNLADVVKTVKPSILIEELKGLS 106
R + + HKV +A+ +K L DVV+ VKP+ L+ GLS
Sbjct: 344 TTTRGD-KLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALL----GLS 389
Score = 82.8 bits (205), Expect = 3e-16
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query: 220 CVND---------VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSE 270
C ND AG L +L+++ + I+F GAG A++G+A+ + G +
Sbjct: 268 CFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTR 327
Query: 271 QDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAP-----VKNLADVVK 317
++A ++VDSKGL+ R + + HKV +A+ +K L DVV+
Sbjct: 328 EEALKSFYLVDSKGLVTTTRGD-KLAKHKVPFARTDISAEDSSLKTLEDVVR 378
Score = 72.7 bits (179), Expect = 3e-13
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAP-- 199
A++G+A+ + G + ++A ++VDSKGL+ R + + HKV +A+
Sbjct: 308 AAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGD-KLAKHKVPFARTDISAE 366
Query: 200 ---VKNLADVVKTVKPSILIGESCV 221
+K L DVV+ VKP+ L+G S V
Sbjct: 367 DSSLKTLEDVVRFVKPTALLGLSGV 391
Score = 57.7 bits (140), Expect = 2e-08
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 817 DRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
D NE LFY LL +Y+ EL+PI+YTPTVG ACQ
Sbjct: 84 DTNETLFYALLLKYLKELLPIIYTPTVGEACQ 115
Score = 42.7 bits (101), Expect = 7e-04
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASL 797
+GT +V AG L +L+++ + I+F G+ G+A++ VA +A L
Sbjct: 274 QGTGAVIAAGFLNALKLSGVPPEEQRIVFFGA--GSAAIGVANNIADL 319
Score = 38.8 bits (91), Expect = 0.013
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 783 EGTASVAVAGVLASLRITKTRLSDNTILFQGAG 815
+GT +V AG L +L+++ + I+F GAG
Sbjct: 274 QGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAG 306
>gnl|CDD|215894 pfam00390, malic, Malic enzyme, N-terminal domain.
Length = 182
Score = 297 bits (763), Expect = 5e-96
Identities = 100/170 (58%), Positives = 126/170 (74%)
Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
++ E +PIVYTPTVG ACQ I+RRPRGL+ SI + G I ++L+NWPE D+R IVV
Sbjct: 13 STHIEEDLPIVYTPTVGEACQAISEIYRRPRGLYTSIGNLGKIKDILKNWPEEDVRVIVV 72
Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
TDGERILGLGDLG GM I GKL+LYTA AGI P + LPI LDVGTN ++LL+DPLY+G
Sbjct: 73 TDGERILGLGDLGVAGMPIMEGKLALYTAFAGIDPSRVLPIVLDVGTNNEKLLNDPLYLG 132
Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYR 673
LR +R G+ YD+F++EF++AV A + IQFEDF +AF L+ YR
Sbjct: 133 LRHKRVRGEEYDEFVDEFVEAVKALFPPFGGIQFEDFGAPNAFEILERYR 182
Score = 115 bits (290), Expect = 2e-29
Identities = 41/59 (69%), Positives = 45/59 (76%)
Query: 371 AVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
+ D+R IVVTDGERILGLGDLG GM I GKL+LYTA AGI P + LPI LDVGTN
Sbjct: 62 WPEEDVRVIVVTDGERILGLGDLGVAGMPIMEGKLALYTAFAGIDPSRVLPIVLDVGTN 120
Score = 65.7 bits (161), Expect = 3e-12
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 817 DRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
+NE LFY+LLS ++ E +PIVYTPTVG ACQ
Sbjct: 2 GKNEVLFYKLLSTHIEEDLPIVYTPTVGEACQ 33
>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion].
Length = 432
Score = 170 bits (434), Expect = 4e-46
Identities = 72/225 (32%), Positives = 101/225 (44%), Gaps = 48/225 (21%)
Query: 508 VELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGE 567
E +P+ YTP V AC+ R+ S +G+ VVTDG
Sbjct: 44 QEDLPLAYTPGVAEACKAISEDPRKAY----SYTARGN-------------LVAVVTDGT 86
Query: 568 RILGLGDLGAY-GMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 626
+LGLG++G G + GK L+ A AGI LPI LDVGTN
Sbjct: 87 AVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTN--------------- 128
Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
+ I EF++A+ +G + ++ D A YR VF+DD QGT
Sbjct: 129 ---------NEIIEFVKALEPTFGG-INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGT 178
Query: 687 ASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
A V +A LL +L++T +L D I+ GA G A +A+A LL +
Sbjct: 179 AIVTLAALLNALKLTGKKLKDQKIVINGA--GAAGIAIADLLVAA 221
Score = 76.5 bits (189), Expect = 2e-14
Identities = 27/52 (51%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 379 IVVTDGERILGLGDLGAY-GMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
VVTDG +LGLG++G G + GK L+ A AGI LPI LDVGTN
Sbjct: 80 AVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTN 128
Score = 71.5 bits (176), Expect = 5e-13
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
+A LL +L++T +L D I+ GAG A + IADL V A KE I++VD K
Sbjct: 183 LAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEE--------NIFVVDRK 234
Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVK 317
GL+ R + + K A + + L +
Sbjct: 235 GLLYDGREDLTMNQKKYAKAIEDTGERTLDLALA 268
Score = 69.9 bits (172), Expect = 2e-12
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
LL +L++T +L D I+ GAG A + IADL V A KE I++VD KGL+
Sbjct: 186 LLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEE--------NIFVVDRKGLL 237
Query: 61 VKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIEELKGLS 106
R + + K A + + L + +LI G+S
Sbjct: 238 YDGREDLTMNQKKYAKAIEDTGERTLDLAL--AGADVLI----GVS 277
Score = 56.4 bits (137), Expect = 3e-08
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 439 VFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPV 493
FT +++K+MA K PIIFAL+NPT E T E A DG + A+G P
Sbjct: 281 AFTEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVATGRSDYPN 330
Score = 49.1 bits (118), Expect = 6e-06
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVK 201
A + IADL V A KE I++VD KGL+ R + + K A + +
Sbjct: 210 AGIAIADLLVAAGVKEE--------NIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGER 261
Query: 202 NLADVVKTVKPSILIGESCVN 222
L + +LIG S V
Sbjct: 262 TLDLAL--AGADVLIGVSGVG 280
Score = 44.9 bits (107), Expect = 1e-04
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASL 797
GTA V +A LL +L++T +L D I+ +G G A +A+A +L +
Sbjct: 177 GTAIVTLAALLNALKLTGKKLKDQKIVI--NGAGAAGIAIADLLVAA 221
Score = 43.3 bits (103), Expect = 5e-04
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 784 GTASVAVAGVLASLRITKTRLSDNTILFQGAG 815
GTA V +A +L +L++T +L D I+ GAG
Sbjct: 177 GTAIVTLAALLNALKLTGKKLKDQKIVINGAG 208
Score = 42.2 bits (100), Expect = 0.001
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 817 DRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
D + L Y + + E +P+ YTP V AC+
Sbjct: 29 DPGKILIYPTVPLHTQEDLPLAYTPGVAEACK 60
>gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic
enzyme (ME), subgroup 1. Malic enzyme (ME), a member of
the amino acid dehydrogenase (DH)-like domain family,
catalyzes the oxidative decarboxylation of L-malate to
pyruvate in the presence of cations (typically Mg++ or
Mn++) with the concomitant reduction of cofactor NAD+ or
NADP+. ME has been found in all organisms, and plays
important roles in diverse metabolic pathways such as
photosynthesis and lipogenesis. This enzyme generally
forms homotetramers. The conversion of malate to
pyruvate by ME typically involves oxidation of malate to
produce oxaloacetate, followed by decarboxylation of
oxaloacetate to produce pyruvate and CO2. This
subfamily consists of eukaryotic and bacterial ME.
Amino acid DH-like NAD(P)-binding domains are members of
the Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 279
Score = 142 bits (361), Expect = 8e-38
Identities = 60/108 (55%), Positives = 74/108 (68%), Gaps = 8/108 (7%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
LLA+LRIT LSD ILF GAG A +GIADL V AM +EG SE++AR KIW+VDSKGL+
Sbjct: 12 LLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLL 71
Query: 61 VKDRPEGGVTGHKVHYAKKHA--PVKNLADVVKTVKPSILIEELKGLS 106
KDR +T K +A+K K+L +VVK VKP++LI GLS
Sbjct: 72 TKDR--KDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLI----GLS 113
Score = 134 bits (339), Expect = 6e-35
Identities = 52/99 (52%), Positives = 64/99 (64%), Gaps = 11/99 (11%)
Query: 406 SLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTS 465
SL + +KP L +G + + FT ++++ MA N+RPIIFALSNPTS
Sbjct: 96 SLLEVVKAVKPT-VL-----IGL-----SGVGGAFTEEVVRAMAKSNERPIIFALSNPTS 144
Query: 466 KAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQ 504
KAECTAE AY TDGR +FASGSPF PV Y GKT+ PGQ
Sbjct: 145 KAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQ 183
Score = 134 bits (339), Expect = 7e-35
Identities = 54/96 (56%), Positives = 67/96 (69%), Gaps = 4/96 (4%)
Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
+AGLLA+LRIT LSD ILF GAG A +GIADL V AM +EG SE++AR KIW+VDSK
Sbjct: 9 LAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSK 68
Query: 284 GLIVKDRPEGGVTGHKVHYAKKHA--PVKNLADVVK 317
GL+ KDR +T K +A+K K+L +VVK
Sbjct: 69 GLLTKDR--KDLTPFKKPFARKDEEKEGKSLLEVVK 102
Score = 109 bits (276), Expect = 2e-26
Identities = 44/82 (53%), Positives = 57/82 (69%), Gaps = 4/82 (4%)
Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHA--P 199
A +GIADL V AM +EG SE++AR KIW+VDSKGL+ KDR +T K +A+K
Sbjct: 36 AGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDR--KDLTPFKKPFARKDEEKE 93
Query: 200 VKNLADVVKTVKPSILIGESCV 221
K+L +VVK VKP++LIG S V
Sbjct: 94 GKSLLEVVKAVKPTVLIGLSGV 115
Score = 67.6 bits (166), Expect = 3e-12
Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
Query: 683 IQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLS 739
IQGTA+VA+AGLLA+LRIT LSD ILF GAG A + +A L+ S + + LS
Sbjct: 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGS--AGIGIADLIVSA-MVREGLS 54
Score = 62.6 bits (153), Expect = 1e-10
Identities = 30/56 (53%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 717 EGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLS 772
+GTA+VA+AGLLA+LRIT LSD ILF GAG A + IA L+ S + + LS
Sbjct: 2 QGTAAVALAGLLAALRITGKPLSDQRILFLGAGS--AGIGIADLIVSA-MVREGLS 54
Score = 57.6 bits (140), Expect = 6e-09
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 783 EGTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
+GTA+VA+AG+LA+LRIT LSD ILF GAG
Sbjct: 2 QGTAAVALAGLLAALRITGKPLSDQRILFLGAGS 35
Score = 56.4 bits (137), Expect = 1e-08
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVA 789
+GTA+VA+AGLLA+LRIT LSD ILF G+G +A
Sbjct: 2 QGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIA 41
>gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain.
Length = 255
Score = 126 bits (320), Expect = 1e-32
Identities = 51/109 (46%), Positives = 68/109 (62%), Gaps = 9/109 (8%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
LL +L+IT LSD I+F GAG A +GIA+L V AM +EG SE++AR IWMVD KGL+
Sbjct: 12 LLNALKITGKPLSDQKIVFFGAGAAGIGIAELLVAAMVREGLSEEEARKNIWMVDRKGLL 71
Query: 61 VKDRPEGGVTGHKVHYAKKHAPVK---NLADVVKTVKPSILIEELKGLS 106
+ R + + K +A+K VK LA+ VK KP +LI G+S
Sbjct: 72 TEGRED--LNPFKKPFARKTNEVKGWGTLAEAVKGAKPDVLI----GVS 114
Score = 121 bits (306), Expect = 7e-31
Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 11/102 (10%)
Query: 403 GKLSLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSN 462
G +L A+ G KP + +G + +P VFT +I++ MA +RPIIFALSN
Sbjct: 94 GWGTLAEAVKGAKP------DVLIG-----VSGVPGVFTEEIVRAMAEHTERPIIFALSN 142
Query: 463 PTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQ 504
PT KAE T E+AY T GR +FA+GSPF PV G++ P Q
Sbjct: 143 PTPKAEITPEEAYKWTAGRALFATGSPFPPVELNGRSDYPNQ 184
Score = 119 bits (300), Expect = 5e-30
Identities = 47/97 (48%), Positives = 63/97 (64%), Gaps = 5/97 (5%)
Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
+AGLL +L+IT LSD I+F GAG A +GIA+L V AM +EG SE++AR IWMVD K
Sbjct: 9 LAGLLNALKITGKPLSDQKIVFFGAGAAGIGIAELLVAAMVREGLSEEEARKNIWMVDRK 68
Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVK---NLADVVK 317
GL+ + R + + K +A+K VK LA+ VK
Sbjct: 69 GLLTEGRED--LNPFKKPFARKTNEVKGWGTLAEAVK 103
Score = 98.4 bits (246), Expect = 7e-23
Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVK 201
A +GIA+L V AM +EG SE++AR IWMVD KGL+ + R + + K +A+K VK
Sbjct: 36 AGIGIAELLVAAMVREGLSEEEARKNIWMVDRKGLLTEGRED--LNPFKKPFARKTNEVK 93
Query: 202 ---NLADVVKTVKPSILIGESCVNDV 224
LA+ VK KP +LIG S V V
Sbjct: 94 GWGTLAEAVKGAKPDVLIGVSGVPGV 119
Score = 64.9 bits (159), Expect = 2e-11
Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 683 IQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLAS 730
IQGTA+V +AGLL +L+IT LSD I+F GA G A + +A LL +
Sbjct: 1 IQGTAAVVLAGLLNALKITGKPLSDQKIVFFGA--GAAGIGIAELLVA 46
Score = 60.7 bits (148), Expect = 5e-10
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 717 EGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLAS 763
+GTA+V +AGLL +L+IT LSD I+F GA G A + IA LL +
Sbjct: 2 QGTAAVVLAGLLNALKITGKPLSDQKIVFFGA--GAAGIGIAELLVA 46
Score = 52.9 bits (128), Expect = 2e-07
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLAS 796
+GTA+V +AGLL +L+IT LSD I+F G+ G A + +A +L +
Sbjct: 2 QGTAAVVLAGLLNALKITGKPLSDQKIVFFGA--GAAGIGIAELLVA 46
Score = 52.6 bits (127), Expect = 2e-07
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 783 EGTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
+GTA+V +AG+L +L+IT LSD I+F GAG
Sbjct: 2 QGTAAVVLAGLLNALKITGKPLSDQKIVFFGAGA 35
>gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme.
Malic enzyme (ME), a member of the amino acid
dehydrogenase (DH)-like domain family, catalyzes the
oxidative decarboxylation of L-malate to pyruvate in the
presence of cations (typically Mg++ or Mn++) with the
concomitant reduction of cofactor NAD+ or NADP+. ME has
been found in all organisms and plays important roles in
diverse metabolic pathways such as photosynthesis and
lipogenesis. This enzyme generally forms homotetramers.
The conversion of malate to pyruvate by ME typically
involves oxidation of malate to produce oxaloacetate,
followed by decarboxylation of oxaloacetate to produce
pyruvate and CO2. Amino acid DH-like NAD(P)-binding
domains are members of the Rossmann fold superfamily and
include glutamate, leucine, and phenylalanine DHs,
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha-beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 254
Score = 112 bits (281), Expect = 1e-27
Identities = 41/72 (56%), Positives = 53/72 (73%)
Query: 433 AAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDP 492
+ + FT ++++ A N+RP+IFALSNPTSKAECTAE+AY T+GR +FASGSPF P
Sbjct: 113 VSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHP 172
Query: 493 VTYKGKTFTPGQ 504
V G T+ PGQ
Sbjct: 173 VELNGGTYKPGQ 184
Score = 103 bits (259), Expect = 1e-24
Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 5/102 (4%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
LLA+L++TK ++S++ +LF GAG A+LGIA+L V KEG S+++A +IW VD KGL+
Sbjct: 12 LLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLL 71
Query: 61 VKDRPEGGVTGHKVH---YAKKHAPVKNLADVVKTVKPSILI 99
VK+R E ++ H +A +L D V+ KP LI
Sbjct: 72 VKNRKE--TCPNEYHLARFANPERESGDLEDAVEAAKPDFLI 111
Score = 100 bits (251), Expect = 1e-23
Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 5/97 (5%)
Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
VAGLLA+L++TK ++S++ +LF GAG A+LGIA+L V KEG S+++A +IW VD K
Sbjct: 9 VAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRK 68
Query: 284 GLIVKDRPEGGVTGHKVH---YAKKHAPVKNLADVVK 317
GL+VK+R E ++ H +A +L D V+
Sbjct: 69 GLLVKNRKE--TCPNEYHLARFANPERESGDLEDAVE 103
Score = 73.8 bits (181), Expect = 2e-14
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVH---YAKKHA 198
A+LGIA+L V KEG S+++A +IW VD KGL+VK+R E ++ H +A
Sbjct: 36 AALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKE--TCPNEYHLARFANPER 93
Query: 199 PVKNLADVVKTVKPSILIGESCV 221
+L D V+ KP LIG S V
Sbjct: 94 ESGDLEDAVEAAKPDFLIGVSRV 116
Score = 60.7 bits (147), Expect = 5e-10
Identities = 26/46 (56%), Positives = 38/46 (82%), Gaps = 2/46 (4%)
Query: 683 IQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLL 728
IQGTASVAVAGLLA+L++TK ++S++ +LF GAG A++ +A L+
Sbjct: 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGA--AALGIANLI 44
Score = 58.0 bits (140), Expect = 4e-09
Identities = 25/45 (55%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 717 EGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLL 761
+GTASVAVAGLLA+L++TK ++S++ +LF GAG A++ IA L+
Sbjct: 2 QGTASVAVAGLLAALKVTKKKISEHKVLFNGAGA--AALGIANLI 44
Score = 53.0 bits (127), Expect = 2e-07
Identities = 20/40 (50%), Positives = 32/40 (80%)
Query: 750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVA 789
+GTASVA+AGLLA+L++TK ++S++ +LF G+G +A
Sbjct: 2 QGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIA 41
Score = 53.0 bits (127), Expect = 2e-07
Identities = 20/34 (58%), Positives = 30/34 (88%)
Query: 783 EGTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
+GTASVAVAG+LA+L++TK ++S++ +LF GAG
Sbjct: 2 QGTASVAVAGLLAALKVTKKKISEHKVLFNGAGA 35
>gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain. Malic
enzymes (malate oxidoreductases) catalyse the oxidative
decarboxylation of malate to form pyruvate.
Length = 231
Score = 103 bits (259), Expect = 1e-24
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
+AGLL +L+IT +L D I+ GAG A +GIA L V A K R IW+VDSK
Sbjct: 9 LAGLLNALKITGKKLEDQRIVVNGAGAAGIGIAKLLVAAGVK--------RKNIWLVDSK 60
Query: 284 GLIVKDRPEGGVTGHKVHYAKK--HAPVKNLADVVK 317
GL+ K R + + +K +A+K L + VK
Sbjct: 61 GLLTKGRED-NLNPYKKPFARKTNERETGTLEEAVK 95
Score = 103 bits (259), Expect = 1e-24
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 17/108 (15%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
LL +L+IT +L D I+ GAG A +GIA L V A K R IW+VDSKGL+
Sbjct: 12 LLNALKITGKKLEDQRIVVNGAGAAGIGIAKLLVAAGVK--------RKNIWLVDSKGLL 63
Query: 61 VKDRPEGGVTGHKVHYAKK--HAPVKNLADVVKTVKPSILIEELKGLS 106
K R + + +K +A+K L + VK +LI G+S
Sbjct: 64 TKGRED-NLNPYKKPFARKTNERETGTLEEAVK--GADVLI----GVS 104
Score = 79.4 bits (197), Expect = 1e-16
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 433 AAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDP 492
+ FT +++K MA +RPIIFALSNPT + E TA AY T + A+G P
Sbjct: 103 VSGPGGAFTEEMVKSMA---ERPIIFALSNPTPEIEPTAADAYRWTA--AIVATGRSDYP 157
Score = 72.4 bits (179), Expect = 3e-14
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKK--HAP 199
A +GIA L V A K R IW+VDSKGL+ K R + + +K +A+K
Sbjct: 36 AGIGIAKLLVAAGVK--------RKNIWLVDSKGLLTKGRED-NLNPYKKPFARKTNERE 86
Query: 200 VKNLADVVKTVKPSILIGESCVNDV 224
L + VK +LIG S
Sbjct: 87 TGTLEEAVK--GADVLIGVSGPGGA 109
Score = 64.7 bits (159), Expect = 2e-11
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 683 IQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRL 738
QGTA V +AGLL +L+IT +L D I+ GAG A + +A LL + + + +
Sbjct: 1 QQGTAIVVLAGLLNALKITGKKLEDQRIVVNGAGA--AGIGIAKLLVAAGVKRKNI 54
Score = 61.7 bits (151), Expect = 2e-10
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 718 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRL 771
GTA V +AGLL +L+IT +L D I+ GAG A + IA LL + + + +
Sbjct: 3 GTAIVVLAGLLNALKITGKKLEDQRIVVNGAGA--AGIGIAKLLVAAGVKRKNI 54
Score = 53.2 bits (129), Expect = 1e-07
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 784 GTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
GTA V +AG+L +L+IT +L D I+ GAG
Sbjct: 3 GTAIVVLAGLLNALKITGKKLEDQRIVVNGAGA 35
Score = 52.0 bits (126), Expect = 3e-07
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRL 804
GTA V +AGLL +L+IT +L D I+ G+G A + +A +L + + + +
Sbjct: 3 GTAIVVLAGLLNALKITGKKLEDQRIVVNGAGA--AGIGIAKLLVAAGVKRKNI 54
>gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic
enzyme (ME), subgroup 2. Malic enzyme (ME), a member of
the amino acid dehydrogenase (DH)-like domain family,
catalyzes the oxidative decarboxylation of L-malate to
pyruvate in the presence of cations (typically Mg++ or
Mn++) with the concomitant reduction of cofactor NAD+ or
NADP+. ME has been found in all organisms, and plays
important roles in diverse metabolic pathways such as
photosynthesis and lipogenesis. This enzyme generally
forms homotetramers. The conversion of malate to
pyruvate by ME typically involves oxidation of malate to
produce oxaloacetate, followed by decarboxylation of
oxaloacetate to produce pyruvate and CO2. This
subfamily consists primarily of archaeal and bacterial
ME. Amino acid DH-like NAD(P)-binding domains are
members of the Rossmann fold superfamily and include
glutamate, leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 226
Score = 56.5 bits (137), Expect = 9e-09
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 225 AGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284
AGLL +L++ ++ + I+ GAG A + IA L + A K + I +VDSKG
Sbjct: 10 AGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAK--------PENIVVVDSKG 61
Query: 285 LIVKDRPEGGVTGHKVHYAKKHAPVKN---LADVVK 317
+I + R + K AK+ P K L + +K
Sbjct: 62 VIYEGREDDLNP-DKNEIAKETNPEKTGGTLKEALK 96
Score = 51.9 bits (125), Expect = 3e-07
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
LL +L++ ++ + I+ GAG A + IA L + A K + I +VDSKG+I
Sbjct: 12 LLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAK--------PENIVVVDSKGVI 63
Query: 61 VKDRPEGGVTGHKVHYAKKHAPVKN---LADVVK 91
+ R + K AK+ P K L + +K
Sbjct: 64 YEGREDDLNP-DKNEIAKETNPEKTGGTLKEALK 96
Score = 45.7 bits (109), Expect = 4e-05
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 718 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITK 768
GTA V +AGLL +L++ ++ + I+ GA G A +AIA LL +
Sbjct: 3 GTAIVTLAGLLNALKLVGKKIEEVKIVINGA--GAAGIAIARLLLAAGAKP 51
Score = 45.3 bits (108), Expect = 4e-05
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITK 735
GTA V +AGLL +L++ ++ + I+ GA G A +A+A LL +
Sbjct: 2 HGTAIVTLAGLLNALKLVGKKIEEVKIVINGA--GAAGIAIARLLLAAGAKP 51
Score = 39.9 bits (94), Expect = 0.003
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTIL 810
GTA V +AGLL +L++ ++ + I+ +G G A +A+A +L + +N ++
Sbjct: 3 GTAIVTLAGLLNALKLVGKKIEEVKIVI--NGAGAAGIAIARLLLAAGAKP----ENIVV 56
Query: 811 FQGAG---EDRNERLFYRL 826
G E R + L
Sbjct: 57 VDSKGVIYEGREDDLNPDK 75
Score = 35.3 bits (82), Expect = 0.079
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 433 AAAIPQVFTADILKDMAAFNKRPIIFALSNPT 464
+ P V +++K M K PI+FAL+NP
Sbjct: 103 GVSRPGVVKKEMIKKM---AKDPIVFALANPV 131
Score = 33.0 bits (76), Expect = 0.41
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 165 RDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKN---LADVVKTVKPSILIGES 219
+ I +VDSKG+I + R + K AK+ P K L + +K + IG S
Sbjct: 51 PENIVVVDSKGVIYEGREDDLNP-DKNEIAKETNPEKTGGTLKEALKGA--DVFIGVS 105
>gnl|CDD|235976 PRK07232, PRK07232, bifunctional malic enzyme
oxidoreductase/phosphotransacetylase; Reviewed.
Length = 752
Score = 52.8 bits (128), Expect = 6e-07
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 225 AGLLASLRITKTRLSDNTILFQGAGEASLGIADLCV-MAMQKEGTSEQDARDKIWMVDSK 283
A LL +L + ++ D I+ GAG A++ +L V + +KE I + DSK
Sbjct: 170 AALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKE---------NIIVCDSK 220
Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVK 317
G+I K R E G+ K YA + LA+ ++
Sbjct: 221 GVIYKGRTE-GMDEWKAAYAVD-TDARTLAEAIE 252
Score = 48.6 bits (117), Expect = 1e-05
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCV-MAMQKEGTSEQDARDKIWMVDSKGL 59
LL +L + ++ D I+ GAG A++ +L V + +KE I + DSKG+
Sbjct: 172 LLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKE---------NIIVCDSKGV 222
Query: 60 IVKDRPEGGVTGHKVHYAKKHAPVKNLADVVK 91
I K R E G+ K YA + LA+ ++
Sbjct: 223 IYKGRTE-GMDEWKAAYAVD-TDARTLAEAIE 252
Score = 43.2 bits (103), Expect = 6e-04
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 678 VFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
VF+DD GTA ++ A LL +L + ++ D I+ GA G A++A LL +L
Sbjct: 156 VFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGA--GAAAIACLNLLVAL 207
Score = 37.8 bits (89), Expect = 0.030
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 439 VFTADILKDMAAFNKRPIIFALSNPT 464
V T +++K MA PIIFAL+NP
Sbjct: 265 VLTPEMVKSMA---DNPIIFALANPD 287
Score = 36.2 bits (85), Expect = 0.076
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 165 RDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVK 208
++ I + DSKG+I K R E G+ K YA + LA+ ++
Sbjct: 211 KENIIVCDSKGVIYKGRTE-GMDEWKAAYAVD-TDARTLAEAIE 252
Score = 34.3 bits (80), Expect = 0.34
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 718 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASL 764
GTA ++ A LL +L + ++ D I+ GA G A++A LL +L
Sbjct: 163 GTAIISAAALLNALELVGKKIEDVKIVVSGA--GAAAIACLNLLVAL 207
Score = 31.6 bits (73), Expect = 2.0
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTIL 810
GTA ++ A LL +L + ++ D I+ SG G A++A +L +L K +N I+
Sbjct: 163 GTAIISAAALLNALELVGKKIEDVKIVV--SGAGAAAIACLNLLVALGAKK----ENIIV 216
Query: 811 FQGAG---EDRNERL 822
G + R E +
Sbjct: 217 CDSKGVIYKGRTEGM 231
>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino
acid dehydrogenase-like proteins. Amino acid
dehydrogenase(DH)-like NAD(P)-binding domains are
members of the Rossmann fold superfamily and are found
in glutamate, leucine, and phenylalanine DHs (DHs),
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha-beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 86
Score = 46.2 bits (110), Expect = 2e-06
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 718 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTIL 777
TA+ AVA L A+ ++T L T++ GAGE IA LLA K L D IL
Sbjct: 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGE--VGKGIAKLLADEGGKKVVLCDRDIL 58
Query: 778 FQGSGEGT 785
+ G
Sbjct: 59 VTATPAGV 66
Score = 45.4 bits (108), Expect = 3e-06
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 685 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTIL 744
TA+ AVA L A+ ++T L T++ GAGE +A LLA K L D IL
Sbjct: 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGE--VGKGIAKLLADEGGKKVVLCDRDIL 58
Query: 745 FQGAGEGT 752
G
Sbjct: 59 VTATPAGV 66
Score = 38.5 bits (90), Expect = 0.001
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTIL 810
TA+ A+A L A+ ++T L T++ G+GE +A +LA K L D IL
Sbjct: 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGE--VGKGIAKLLADEGGKKVVLCDRDIL 58
Query: 811 FQGAGE 816
Sbjct: 59 VTATPA 64
Score = 37.0 bits (86), Expect = 0.003
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKE 266
VA L A+ ++T L T++ GAGE GIA L K+
Sbjct: 7 VALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKK 49
Score = 33.5 bits (77), Expect = 0.059
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKE 40
L A+ ++T L T++ GAGE GIA L K+
Sbjct: 10 LKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKK 49
>gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed.
Length = 763
Score = 50.7 bits (122), Expect = 3e-06
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 225 AGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284
A LL L++ + D ++ GAG A+L DL V K R+ IW+ D KG
Sbjct: 178 AALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVK--------RENIWVTDIKG 229
Query: 285 LIVKDRPEGGVTGHKVHYAKKHAPVKNLADVV 316
++ + R E + K YA+K + LA+V+
Sbjct: 230 VVYEGRTE-LMDPWKARYAQK-TDARTLAEVI 259
Score = 47.6 bits (114), Expect = 3e-05
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
LL L++ + D ++ GAG A+L DL V K R+ IW+ D KG++
Sbjct: 180 LLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVK--------RENIWVTDIKGVV 231
Query: 61 VKDRPEGGVTGHKVHYAKKHAPVKNLADVV 90
+ R E + K YA+K + LA+V+
Sbjct: 232 YEGRTE-LMDPWKARYAQK-TDARTLAEVI 259
Score = 46.8 bits (112), Expect = 4e-05
Identities = 53/178 (29%), Positives = 71/178 (39%), Gaps = 45/178 (25%)
Query: 562 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 619
VV++G +LGLG++G PV GK L+ AGI I LD DP
Sbjct: 75 VVSNGTAVLGLGNIGPLA-SKPVMEGKAVLFKKFAGI---DVFDIELDE--------SDP 122
Query: 620 LYIGLRQRRTTGQAYDDFIEEFMQAVVAR----YGQHVLIQFEDFANHSAFRFLDTYRNR 675
D +E +VA +G I ED F R R
Sbjct: 123 ---------------DKLVE-----IVAALEPTFGG---INLEDIKAPECFYIERELRER 159
Query: 676 Y--CVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
VF+DD GTA + A LL L++ + D ++ GA G A++A LL SL
Sbjct: 160 MKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGA--GAAALACLDLLVSL 215
Score = 37.9 bits (89), Expect = 0.022
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 437 PQVFTADILKDMAAFNKRPIIFALSNPT 464
V +++K MA RP+IFAL+NPT
Sbjct: 271 AGVLKPEMVKKMAP---RPLIFALANPT 295
Score = 36.8 bits (86), Expect = 0.056
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 165 RDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVV 207
R+ IW+ D KG++ + R E + K YA+K + LA+V+
Sbjct: 219 RENIWVTDIKGVVYEGRTE-LMDPWKARYAQK-TDARTLAEVI 259
Score = 32.2 bits (74), Expect = 1.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 718 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASL 764
GTA + A LL L++ + D ++ GA G A++A LL SL
Sbjct: 171 GTAIIVAAALLNGLKLVGKDIEDVKLVASGA--GAAALACLDLLVSL 215
Score = 31.4 bits (72), Expect = 2.7
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 380 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGI 414
VV++G +LGLG++G PV GK L+ AGI
Sbjct: 75 VVSNGTAVLGLGNIGPLA-SKPVMEGKAVLFKKFAGI 110
Score = 30.6 bits (70), Expect = 4.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASL 797
GTA + A LL L++ + D ++ SG G A++A +L SL
Sbjct: 171 GTAIIVAAALLNGLKLVGKDIEDVKLVA--SGAGAAALACLDLLVSL 215
>gnl|CDD|183798 PRK12861, PRK12861, malic enzyme; Reviewed.
Length = 764
Score = 43.7 bits (103), Expect = 4e-04
Identities = 63/243 (25%), Positives = 92/243 (37%), Gaps = 62/243 (25%)
Query: 501 TPGQEYVVELMPIV--------YTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRN 552
TPG+ VV P+V YTP V AC++ I P F +G++ V
Sbjct: 19 TPGKISVVASKPLVTQRDLALAYTPGVASACEE---IAADPLNAF-RFTSRGNLVGV--- 71
Query: 553 WPETDIRAIVVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGT 610
+T+G +LGLG++GA PV GK L+ AGI D+
Sbjct: 72 ----------ITNGTAVLGLGNIGALA-SKPVMEGKAVLFKKFAGID-------VFDIEI 113
Query: 611 NTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLD 670
N DP D + + + + +G I ED F
Sbjct: 114 NET----DP----------------DKLVDIIAGLEPTFGG---INLEDIKAPECFTVER 150
Query: 671 TYRNRY--CVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLL 728
R R VF+DD GTA A + L++ + + ++ GA G A++A LL
Sbjct: 151 KLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGA--GAAALACLDLL 208
Query: 729 ASL 731
L
Sbjct: 209 VDL 211
Score = 31.4 bits (71), Expect = 2.7
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 16/77 (20%)
Query: 439 VFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGK 498
V A++LK MAA RP+I AL+NPT E E A+ D D V G+
Sbjct: 269 VLKAEMLKAMAA---RPLILALANPTP--EIFPELAHATRD-----------DVVIATGR 312
Query: 499 TFTPGQEYVVELMPIVY 515
+ P Q V P ++
Sbjct: 313 SDYPNQVNNVLCFPYIF 329
Score = 29.5 bits (66), Expect = 9.5
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 380 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGI 414
V+T+G +LGLG++GA PV GK L+ AGI
Sbjct: 71 VITNGTAVLGLGNIGALA-SKPVMEGKAVLFKKFAGI 106
>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism
associated alcohol dehydrogenase. This clade of
zinc-binding alcohol dehydrogenases (members of
pfam00107) are repeatedly associated with genes proposed
to be involved with the catabolism of phosphonate
compounds.
Length = 280
Score = 34.0 bits (78), Expect = 0.30
Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 681 DDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGE-GTASVAVAGLLASLRITKTRLS 739
D + A A A ++A+L L +L GAG G + A A + R+ S
Sbjct: 96 DAVAAPAGCATATVMAALEAA-GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPS 154
Query: 740 DNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASLRI 799
+ G ++A +LA + + + SG A+ AV L SL +
Sbjct: 155 PDR-RELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSG---ATAAVRACLESLDV 210
>gnl|CDD|236643 PRK10044, PRK10044, ferrichrome outer membrane transporter;
Provisional.
Length = 727
Score = 30.5 bits (69), Expect = 5.2
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 482 GVFASGSPFDPVTYKGKTFTPGQEYVVELMPIVYTPTV 519
G G+ F P KGK + G +YV + PIV T V
Sbjct: 518 GTGKDGNIFAPS--KGKQYEAGVKYVPKDRPIVVTGAV 553
>gnl|CDD|233909 TIGR02520, pilus_B_mal_scr, type IVB pilus formation outer membrane
protein, R64 PilN family. Several related protein
families encode outer membrane pore proteins for type II
secretion, type III secretion, and type IV pilus
formation. This protein family appears to encode a
secretin for pilus formation, although it is quite
different from PilQ. Members include the PilN
lipoprotein of the plasmid R64 thin pilus, a type IV
pilus. Scoring between the trusted and noise cutoffs are
examples of bundle-forming pilus B (bfpB) [Cell
envelope, Surface structures, Protein fate, Protein and
peptide secretion and trafficking].
Length = 497
Score = 29.5 bits (66), Expect = 8.8
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 748 AGEGTASVAIAGLLASLRITKTRLSDNTILFQG-SGEGTASVAVA 791
A GT++ A AG A + + + T L + S +G SV +
Sbjct: 297 ANAGTSTAATAGSSAGINVVDGPFAGTTALIRALSTQGKVSVVTS 341
>gnl|CDD|182646 PRK10683, PRK10683, putrescine transporter subunit: membrane
component of ABC superfamily; Provisional.
Length = 317
Score = 29.3 bits (66), Expect = 9.1
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 602 LPITLDVGTNTQQLLDDPLYI 622
L ITL++G N QL DDPLY
Sbjct: 77 LSITLNLG-NFLQLTDDPLYF 96
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.398
Gapped
Lambda K H
0.267 0.0886 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 43,447,755
Number of extensions: 4422363
Number of successful extensions: 3804
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3745
Number of HSP's successfully gapped: 127
Length of query: 848
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 743
Effective length of database: 6,280,432
Effective search space: 4666360976
Effective search space used: 4666360976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (27.8 bits)