RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14377
(848 letters)
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase,
oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP:
c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A*
1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Length = 564
Score = 394 bits (1015), Expect = e-128
Identities = 141/227 (62%), Positives = 178/227 (78%), Gaps = 2/227 (0%)
Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
Q+ + LMPIVYTPTVGLAC +YG IFRRP+GLFISI D+GH+ ++ NWPE ++A+VV
Sbjct: 81 QDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVV 140
Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
TDGERILGLGDLG YGMGIPVGKL LYTA AGI+P +CLP+ +DVGT+ LL DP Y+G
Sbjct: 141 TDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMG 200
Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
L Q+R Q YDD I+EFM+A+ RYG++ LIQFEDF NH+AFRFL YR +YC FNDDI
Sbjct: 201 LYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDI 260
Query: 684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLAS 730
QGTA+VA+AGLLA+ ++ +S++ ILF GA G A++ +A L+
Sbjct: 261 QGTAAVALAGLLAAQKVISKPISEHKILFLGA--GEAALGIANLIVM 305
Score = 126 bits (319), Expect = 1e-30
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
LLA+ ++ +S++ ILF GAGEA+LGIA+L VM+M + G SEQ+A+ KIWM D GL+
Sbjct: 271 LLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLL 330
Query: 61 VKDRPEGGVTGHKVHYAKKHA--PVKNLADVVKTVKPSILIEELKGLS 106
VK R + ++ + D V +KPS +I G++
Sbjct: 331 VKGRK-AKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTII----GVA 373
Score = 123 bits (310), Expect = 2e-29
Identities = 41/55 (74%), Positives = 49/55 (89%)
Query: 375 DIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
++A+VVTDGERILGLGDLG YGMGIPVGKL LYTA AGI+P +CLP+ +DVGT+
Sbjct: 134 HVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTD 188
Score = 120 bits (302), Expect = 2e-28
Identities = 43/73 (58%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Query: 433 AAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDP 492
A ++FT D+++ MA+ N+RP+IFALSNPT++AECTAE+AY T+GR +FASGSPF P
Sbjct: 372 VAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGP 431
Query: 493 VTYK-GKTFTPGQ 504
V G+ FTPGQ
Sbjct: 432 VKLTDGRVFTPGQ 444
Score = 117 bits (294), Expect = 2e-27
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
+AGLLA+ ++ +S++ ILF GAGEA+LGIA+L VM+M + G SEQ+A+ KIWM D
Sbjct: 268 LAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKY 327
Query: 284 GLIVKDRPEGGVTGHKVHYAKKHA--PVKNLADVVK 317
GL+VK R + ++ + D V
Sbjct: 328 GLLVKGRK-AKIDSYQEPFTHSAPESIPDTFEDAVN 362
Score = 100 bits (250), Expect = 4e-22
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHA--P 199
A+LGIA+L VM+M + G SEQ+A+ KIWM D GL+VK R + ++ +
Sbjct: 295 AALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRK-AKIDSYQEPFTHSAPESI 353
Query: 200 VKNLADVVKTVKPSILIGES 219
D V +KPS +IG +
Sbjct: 354 PDTFEDAVNILKPSTIIGVA 373
Score = 79.0 bits (195), Expect = 2e-15
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 319 GMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQAL 370
GMAF+++ERQ LG+ GLLP +++QD Q N+ + PL KYIY+ +
Sbjct: 17 GMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGI 68
Score = 70.9 bits (174), Expect = 7e-13
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 790 VAGVLASLRITKTRLSDNTILFQGAGEDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
+L+ + L + ++RNE+LFYR+L + + LMPIVYTPTVGLAC
Sbjct: 45 ALRFHRNLKKMTSPLEKYIYI--MGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACS 101
Score = 47.8 bits (114), Expect = 1e-05
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 737 RLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLAS 796
+ + F +GTA+VA+AGLLA+ ++ +S++ ILF G+ G A++ +A ++
Sbjct: 248 KYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGA--GEAALGIANLIVM 305
Score = 47.8 bits (114), Expect = 1e-05
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 770 RLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
+ + F +GTA+VA+AG+LA+ ++ +S++ ILF GAGE
Sbjct: 248 KYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGE 294
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent,
NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET:
NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB:
2aw5_A
Length = 555
Score = 393 bits (1011), Expect = e-127
Identities = 161/227 (70%), Positives = 190/227 (83%), Gaps = 2/227 (0%)
Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
+ MPIVYTPTVGLACQ YGL FRRPRGLFI+IHD+GHI+ +L++WPE+ I+AIVV
Sbjct: 79 TSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVV 138
Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
TDGERILGLGDLG YGMGIPVGKL+LYTA G+KPHQCLP+ LDVGT+ + LL DPLYIG
Sbjct: 139 TDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIG 198
Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDI 683
LR +R GQAYDD ++EFM+AV +RYG + LIQFEDFAN +AFR L YRN+YC FNDDI
Sbjct: 199 LRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYRNKYCTFNDDI 258
Query: 684 QGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLAS 730
QGTASVAVAGLLA+LRITK RLSD+T+LFQGA G A++ +A L+
Sbjct: 259 QGTASVAVAGLLAALRITKNRLSDHTVLFQGA--GEAALGIANLIVM 303
Score = 134 bits (338), Expect = 5e-33
Identities = 65/106 (61%), Positives = 84/106 (79%), Gaps = 6/106 (5%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
LLA+LRITK RLSD+T+LFQGAGEA+LGIA+L VMAMQKEG S+++A +IWMVDSKGLI
Sbjct: 269 LLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLI 328
Query: 61 VKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIEELKGLS 106
VK R +T K H+A +H +KNL D+VK +KP++LI G++
Sbjct: 329 VKGRA--SLTPEKEHFAHEHCEMKNLEDIVKDIKPTVLI----GVA 368
Score = 124 bits (313), Expect = 6e-30
Identities = 63/94 (67%), Positives = 77/94 (81%), Gaps = 2/94 (2%)
Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
VAGLLA+LRITK RLSD+T+LFQGAGEA+LGIA+L VMAMQKEG S+++A +IWMVDSK
Sbjct: 266 VAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSK 325
Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVK 317
GLIVK R +T K H+A +H +KNL D+VK
Sbjct: 326 GLIVKGRA--SLTPEKEHFAHEHCEMKNLEDIVK 357
Score = 124 bits (312), Expect = 1e-29
Identities = 61/100 (61%), Positives = 69/100 (69%), Gaps = 12/100 (12%)
Query: 406 SLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTS 465
+L + IKP T+ +G AAI FT IL+DMAAFNKRPIIFALSNPTS
Sbjct: 351 NLEDIVKDIKP------TVLIGV-----AAIGGAFTQQILQDMAAFNKRPIIFALSNPTS 399
Query: 466 KAECTAEQAYVNTDGRGVFASGSPFDPVTY-KGKTFTPGQ 504
KAECTAEQ Y T+GRG+FASGSPFDPVT G+T PGQ
Sbjct: 400 KAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQ 439
Score = 123 bits (310), Expect = 2e-29
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 375 DIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
I+AIVVTDGERILGLGDLG YGMGIPVGKL+LYTA G+KPHQCLP+ LDVGT+
Sbjct: 132 VIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTD 186
Score = 108 bits (271), Expect = 1e-24
Identities = 45/78 (57%), Positives = 60/78 (76%), Gaps = 2/78 (2%)
Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVK 201
A+LGIA+L VMAMQKEG S+++A +IWMVDSKGLIVK R +T K H+A +H +K
Sbjct: 293 AALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRA--SLTPEKEHFAHEHCEMK 350
Query: 202 NLADVVKTVKPSILIGES 219
NL D+VK +KP++LIG +
Sbjct: 351 NLEDIVKDIKPTVLIGVA 368
Score = 80.9 bits (200), Expect = 7e-16
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 319 GMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQAL 370
GMAF++EERQ L IHGLLP QD Q++ N +R L++YI L +L
Sbjct: 15 GMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSL 66
Score = 70.5 bits (173), Expect = 1e-12
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 817 DRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
DRNE+LFY++L+ + MPIVYTPTVGLACQ
Sbjct: 68 DRNEKLFYKVLTSDIERFMPIVYTPTVGLACQ 99
Score = 48.1 bits (115), Expect = 8e-06
Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 737 RLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLAS 796
+ + F +GTASVA+AGLLA+LRITK RLSD+T+LFQG+ G A++ +A ++
Sbjct: 246 KYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGA--GEAALGIANLIVM 303
Score = 47.3 bits (113), Expect = 1e-05
Identities = 29/47 (61%), Positives = 36/47 (76%)
Query: 770 RLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
+ + F +GTASVAVAG+LA+LRITK RLSD+T+LFQGAGE
Sbjct: 246 KYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGE 292
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative
decarboxylase, rossmann fold, MAla dehydrogenase; HET:
NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB:
1llq_A*
Length = 605
Score = 383 bits (985), Expect = e-123
Identities = 138/229 (60%), Positives = 172/229 (75%), Gaps = 4/229 (1%)
Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKG--HISEVLRNWPETDIRAI 561
++V ELMPIVYTPTVGLACQ +G I+R+P+GL+I+I+D I ++L NW E D+RAI
Sbjct: 115 CDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAI 174
Query: 562 VVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLY 621
VVTDGERILGLGDLGAYG+GIPVGKL+LY AL G++P CLP+ LDVGTN LL+DP Y
Sbjct: 175 VVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFY 234
Query: 622 IGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFND 681
IGLR +R G+ YD ++ FM+A +YGQ LIQFEDFAN +AFR LD Y+++Y +FND
Sbjct: 235 IGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFND 294
Query: 682 DIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLAS 730
DIQGTASV VAGLL R+TK +S LF GA G AS +A ++
Sbjct: 295 DIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGA--GAASTGIAEMIVH 341
Score = 139 bits (352), Expect = 1e-34
Identities = 65/174 (37%), Positives = 82/174 (47%), Gaps = 63/174 (36%)
Query: 319 GMAFSIEERQALGIHGLLPA------------------------------AVKSQDEQLH 348
GM FS+ ERQ LG+HGLLP ++ ++E+L
Sbjct: 51 GMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDRNEKLF 110
Query: 349 ----------------------LCKLNVDRYEDPLNKYIYLQ-----------ALAVKTD 375
C+ Y P YI + + + D
Sbjct: 111 YRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEED 170
Query: 376 IRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
+RAIVVTDGERILGLGDLGAYG+GIPVGKL+LY AL G++P CLP+ LDVGTN
Sbjct: 171 VRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTN 224
Score = 128 bits (324), Expect = 4e-31
Identities = 41/99 (41%), Positives = 57/99 (57%), Gaps = 11/99 (11%)
Query: 406 SLYTALAGIKPHQCLPITLDVGTNWRRAAAIPQVFTADILKDMAAFNKRPIIFALSNPTS 465
S+ + +P +G + + F ++++ MA N+RPIIFALSNPTS
Sbjct: 389 SILEVIRAARP------GALIGA-----STVRGAFNEEVIRAMAEINERPIIFALSNPTS 437
Query: 466 KAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQ 504
KAECTAE+AY T+G ++ASGSPF G T+ PGQ
Sbjct: 438 KAECTAEEAYTFTNGAALYASGSPFPNFELNGHTYKPGQ 476
Score = 125 bits (315), Expect = 6e-30
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
LL R+TK +S LF GAG AS GIA++ V MQ EG S+++A ++I+++D GL+
Sbjct: 307 LLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLV 366
Query: 61 VKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIEELKGLS 106
K+R E + V +AK ++ +V++ +P LI G S
Sbjct: 367 TKNRKE--MNPRHVQFAKDMPETTSILEVIRAARPGALI----GAS 406
Score = 116 bits (293), Expect = 3e-27
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
VAGLL R+TK +S LF GAG AS GIA++ V MQ EG S+++A ++I+++D
Sbjct: 304 VAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDID 363
Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVK 317
GL+ K+R E + V +AK ++ +V++
Sbjct: 364 GLVTKNRKE--MNPRHVQFAKDMPETTSILEVIR 395
Score = 100 bits (252), Expect = 3e-22
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVK 201
AS GIA++ V MQ EG S+++A ++I+++D GL+ K+R E + V +AK
Sbjct: 331 ASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKE--MNPRHVQFAKDMPETT 388
Query: 202 NLADVVKTVKPSILIGES 219
++ +V++ +P LIG S
Sbjct: 389 SILEVIRAARPGALIGAS 406
Score = 65.5 bits (160), Expect = 4e-11
Identities = 25/32 (78%), Positives = 30/32 (93%)
Query: 817 DRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
DRNE+LFYR++ ++V ELMPIVYTPTVGLACQ
Sbjct: 104 DRNEKLFYRVVCDHVKELMPIVYTPTVGLACQ 135
Score = 46.7 bits (111), Expect = 3e-05
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 737 RLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLAS 796
+ D +F +GTASV +AGLL R+TK +S LF G+ G AS +A ++
Sbjct: 284 KYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGA--GAASTGIAEMIVH 341
Score = 45.9 bits (109), Expect = 5e-05
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 770 RLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
+ D +F +GTASV VAG+L R+TK +S LF GAG
Sbjct: 284 KYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGA 330
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba
histolytica}
Length = 487
Score = 73.5 bits (181), Expect = 1e-13
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 41/179 (22%)
Query: 562 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 619
VV+D R+LG GD+ G G+ V GK L L GI +PI +D + ++ +DP
Sbjct: 95 VVSDSTRVLGDGDVTPPG-GLGVMEGKALLMKYLGGI---DAVPICID--SKNKEGKNDP 148
Query: 620 LYIGLRQRRTTGQAYDDFIEEFMQAVVAR----YGQHVLIQFEDFANHSAFRFLDTYRNR 675
D IE V R +G I ED + + ++ LD R
Sbjct: 149 ---------------DAVIE-----FVQRIQHTFGA---INLEDISQPNCYKILDVLRES 185
Query: 676 YC---VFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
C V++DD QGTASV +AGLL +L++ K + + ++F GA G+++ L+ +
Sbjct: 186 -CDIPVWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGA--GSSNTTCLRLIVTA 241
Score = 51.1 bits (123), Expect = 9e-07
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 225 AGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284
AGLL +L++ K + + ++F GAG ++ L V A G KI M DSKG
Sbjct: 204 AGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTA----GAD----PKKIVMFDSKG 255
Query: 285 LIVKDRPEG---GVTGHKVHYAKKHAPVK--NLADVVK 317
+ R + K + P K ++A+
Sbjct: 256 SLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACV 293
Score = 46.9 bits (112), Expect = 2e-05
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
LL +L++ K + + ++F GAG ++ L V A G KI M DSKG +
Sbjct: 206 LLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTA----GAD----PKKIVMFDSKGSL 257
Query: 61 VKDRPEG---GVTGHKVHYAKKHAPVK--NLADVVK 91
R + K + P K ++A+
Sbjct: 258 HNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACV 293
Score = 41.9 bits (99), Expect = 8e-04
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 380 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGI 414
VV+D R+LG GD+ G G+ V GK L L GI
Sbjct: 95 VVSDSTRVLGDGDVTPPG-GLGVMEGKALLMKYLGGI 130
Score = 36.9 bits (86), Expect = 0.024
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 437 PQVFTADILKDMAAFNKRPIIFALSNPT 464
P V A+ +K M ++PI+F +NP
Sbjct: 306 PGVVKAEWIKSMG---EKPIVFCCANPV 330
Score = 35.7 bits (83), Expect = 0.061
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASL 797
GTASV +AGLL +L++ K + + ++F G G+++ ++ +
Sbjct: 197 GTASVTLAGLLNALKLVKKDIHECRMVF--IGAGSSNTTCLRLIVTA 241
Score = 33.8 bits (78), Expect = 0.26
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 784 GTASVAVAGVLASLRITKTRLSDNTILFQGAG 815
GTASV +AG+L +L++ K + + ++F GAG
Sbjct: 197 GTASVTLAGLLNALKLVKKDIHECRMVFIGAG 228
Score = 33.8 bits (78), Expect = 0.27
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 165 RDKIWMVDSKGLIVKDRPEG---GVTGHKVHYAKKHAPVK--NLADVVK 208
KI M DSKG + R + K + P K ++A+
Sbjct: 245 PKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACV 293
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.6 bits (162), Expect = 3e-11
Identities = 59/295 (20%), Positives = 89/295 (30%), Gaps = 95/295 (32%)
Query: 246 QGAGEASLGIADLCVMAMQKEGTSEQDARDKIW------MVDSKGL----IVKDRPE--- 292
QG+ G M M TS+ A+D +W D+ G IV + P
Sbjct: 1624 QGS--QEQG------MGMDLYKTSKA-AQD-VWNRADNHFKDTYGFSILDIVINNPVNLT 1673
Query: 293 ---GGVTGHKVH--YAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQL 347
GG G ++ Y+ M F L + +E
Sbjct: 1674 IHFGGEKGKRIRENYSA---------------MIFETIVDGKLKTEKIFKEI----NEHS 1714
Query: 348 HLCKLNVDRYEDPLNKYIYLQ-ALAVKTDIRAIVVTDGERIL---GLGDLGAYGMGIPVG 403
+ + L+ + Q AL + + A L GL A G
Sbjct: 1715 TSYTFRSE--KGLLSATQFTQPALTL-MEK-AAF-----EDLKSKGLIPADATFAG---- 1761
Query: 404 KLSL--YTAL---AGIKPHQCLPI--TLDVGTNWR---RAAAIPQVFTADILKDMAAFNK 453
SL Y AL A + + I ++V +R A+P+ M A N
Sbjct: 1762 -HSLGEYAALASLADV-----MSIESLVEV-VFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 454 RPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTYKGKTFTPGQEYVV 508
+ + S E A Q V G+ +G + V Y Q+YV
Sbjct: 1815 GRVAASFS-----QE--ALQYVVERVGK---RTGWLVEIVNYN----VENQQYVA 1855
Score = 58.1 bits (140), Expect = 1e-08
Identities = 76/459 (16%), Positives = 132/459 (28%), Gaps = 173/459 (37%)
Query: 134 QGIS----------YSIHASLGIADLCVMA---MQKEGTSEQDARDKIWMVDSKGLIVK- 179
QG + Y + L + DL + + + + DA +K++ ++GL +
Sbjct: 163 QGNTDDYFEELRDLYQTYHVL-VGDLIKFSAETLSELIRTTLDA-EKVF---TQGLNILE 217
Query: 180 --DRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSI-LIGESCVNDVAGLLASLRITKT 236
+ P Y P+ S LIG V +A + + ++
Sbjct: 218 WLENPS---NTPDKDYLL-SIPI------------SCPLIG---VIQLAHYVVTAKLLGF 258
Query: 237 RLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKI-----WMVDSKGLIVKDRP 291
+ +GA S G+ +A S + K ++
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI------------ 306
Query: 292 EGGVTGHKVHYAKKHAPVKNLADVVKTG------MAFSIEERQALGIHGLLPAAVKSQDE 345
GV ++ Y P L D ++ M L I L V
Sbjct: 307 --GVRCYEA-YPNTSLPPSILEDSLENNEGVPSPM---------LSISNLTQEQV----- 349
Query: 346 QLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLG---DLGAYGMGIPV 402
Q ++ K N P K + + +L V + +VV+ G L YG+ + +
Sbjct: 350 QDYVNKTNS---HLPAGKQVEI-SL-VNGA-KNLVVS--------GPPQSL--YGLNLTL 393
Query: 403 GKLSLYTALAGI----------KP---HQCLPITL----------------DVGTN---W 430
K A +G+ K ++ LP+ D+ N +
Sbjct: 394 RKAK---APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 431 RRAA-AIPQVF-TAD-------------ILKDM---------AAFNKRP---IIFALSNP 463
IP V+ T D + D + + F
Sbjct: 451 NAKDIQIP-VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA 509
Query: 464 TSKAECTAEQAYVNTDGRGV---FAS---GSPFDPVTYK 496
+ T N DG GV A +P D +K
Sbjct: 510 SGLGVLTHR----NKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 50.0 bits (119), Expect = 3e-06
Identities = 59/334 (17%), Positives = 98/334 (29%), Gaps = 119/334 (35%)
Query: 599 HQCLPITLDVGTNT----QQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAV--VARYGQH 652
H L L V T + QL + + + T G A DD E V ++ +
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQ--FNKILPEPTEGFAADD---EPTTPAELVGKFLGY 67
Query: 653 VLIQFEDFANHSAFR-----FLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLSD 707
V E + F L + N Y + +DI ++A A LL T + +
Sbjct: 68 VSSLVEP-SKVGQFDQVLNLCLTEFENCY-LEGNDIH---ALA-AKLLQENDTTLVKTKE 121
Query: 708 --------------------NTILFQGAGEGTASV------------------------- 722
N+ LF+ GEG A +
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 723 --------AVAGLLASLRITKTRLSDNTILFQG-------AGEGT-------ASVAIA-- 758
A L+ L +T L + QG S+ I+
Sbjct: 182 VLVGDLIKFSAETLSEL--IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 759 --GL--LASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTILFQGA 814
G+ LA +T L + +G A+ G++ ++ I +D+
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKG-ATGHSQGLVTAVAIA---ETDS------- 288
Query: 815 GEDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
E F+ + + + L I G+ C
Sbjct: 289 WES-----FFVSVRKAITVLFFI------GVRCY 311
Score = 49.7 bits (118), Expect = 4e-06
Identities = 96/667 (14%), Positives = 180/667 (26%), Gaps = 238/667 (35%)
Query: 229 ASLRITKTRLSDNTILFQGAGEASLGI-ADLCVMAMQKEGTSEQDARDKIWMVDSKGLIV 287
S R L G+ E L + +A Q Q+ +KI ++G
Sbjct: 4 YSTRPL--------TLSHGSLEHVLLVPTASFFIASQL-----QEQFNKILPEPTEGFAA 50
Query: 288 KDRPEGGV------TGHKVHYAKKHAPVKNLADVVKTGM-AFSIEERQALG---IHGLLP 337
D P G+ + V V+ + F E L IH L
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPS-KVGQFDQVLNLCLTEF---ENCYLEGNDIHALA- 105
Query: 338 AAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYG 397
A + +++ + + + Y+ A + +R A
Sbjct: 106 AKLLQENDTTLVKTKELIKN--------YITARIM-----------AKRPFDKKSNSALF 146
Query: 398 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTN---W---RRAAAIPQVFTADILKDMAAF 451
+ G L G Q G + R V D++K A
Sbjct: 147 RAVGEGNAQLVAIFGG----Q--------GNTDDYFEELRDLYQTYHVLVGDLIKFSAE- 193
Query: 452 NKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDPVTY-KGKTFTPGQEYVVEL 510
L + + AE+ + +G + + + + + TP ++Y++
Sbjct: 194 -------TL-SELIRTTLDAEKVF----TQG-------LNILEWLENPSNTPDKDYLLS- 233
Query: 511 MPIVYTPTVGL--------ACQKYGL----IFRRPRGLFISIHDKGHISEVLRNWPETDI 558
+PI P +G+ + G + +G + H +G ++
Sbjct: 234 IPISC-PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA--TGHSQGLVT----------- 279
Query: 559 RAIVV---TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQL 615
A+ + E S + ++ + + +
Sbjct: 280 -AVAIAETDSWE--------------------SFFVSVR-----KAI-----------TV 302
Query: 616 LDDPLYIGLRQRRTTGQ------AYDDFIEE------FMQAVVARYGQHVLIQFEDFANH 663
L +IG+R +D +E M ++ Q + + + N
Sbjct: 303 L---FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM-LSISNLTQEQVQDYVNKTNS 358
Query: 664 SAFRFLDTYRNRY-CVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASV 722
L + + N G ++ V+G SL L +G + +
Sbjct: 359 H----LPAGKQVEISLVN----GAKNLVVSGPPQSLYGLNLTLRK---AKAPSGLDQSRI 407
Query: 723 -----AVAGLLASLRIT---------------KTRLSDNTILFQGA-----------G-- 749
+ L + L N + F G
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 750 --EGTASVA--IAGLLASLRI---TKTRLSDNTIL-FQGSG-------------EGT-AS 787
+ S++ I + L + T T+ IL F G G +GT
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF-GPGGASGLGVLTHRNKDGTGVR 526
Query: 788 VAVAGVL 794
V VAG L
Sbjct: 527 VIVAGTL 533
Score = 47.4 bits (112), Expect = 2e-05
Identities = 37/240 (15%), Positives = 66/240 (27%), Gaps = 95/240 (39%)
Query: 579 GMGIPVGKLSLYTALAGIKP--HQCLPITLDV-GTNTQQL-LDDPLYIGLRQRRTTGQAY 634
GMG + LY + ++ D G + + +++P+ + + G+
Sbjct: 1630 GMG-----MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR- 1683
Query: 635 DDFIEEFMQAVVARYGQHVLIQFEDFANHSA-----FRFLDTYRNRYCVFNDDIQGTASV 689
I E Y + FE + F+ ++ + Y F +
Sbjct: 1684 ---IRE-------NYSA---MIFETIVDGKLKTEKIFKEINEHSTSYT-FRSE------- 1722
Query: 690 AVAGLLASLRITKTRLSDNT---ILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQ 746
GLL + T+ T + A L S
Sbjct: 1723 --KGLL-----SATQ---FTQPALT-------LMEKAAFEDLKS---------------- 1749
Query: 747 GAGEGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVL---ASLRITKTR 803
G A AG SL GE A ++A V+ + + + R
Sbjct: 1750 -KGLIPADATFAGH--SL-----------------GEYAALASLADVMSIESLVEVVFYR 1789
Score = 37.3 bits (86), Expect = 0.022
Identities = 49/280 (17%), Positives = 80/280 (28%), Gaps = 111/280 (39%)
Query: 524 QKYGL----IFRR-PRGLFISIHDKGHISEVLR-NWPETDIRAIVVTDG----ERILGLG 573
YG I P L +IH G + +R N+ IV DG E+I
Sbjct: 1655 DTYGFSILDIVINNPVNL--TIHFGGEKGKRIRENYSAMIFETIV--DGKLKTEKIFKEI 1710
Query: 574 D--LGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP-LYIGLRQRRTT 630
+ +Y G LS T TQ P L
Sbjct: 1711 NEHSTSYTFRSEKGLLSA-TQ------------------FTQ-----PALT-------LM 1739
Query: 631 GQA-YDDFIEEFMQAVVARYGQHVLIQFED-FANHSAFRFLDTYRNRYCVFNDDIQG--T 686
+A ++D + LI + FA HS L G
Sbjct: 1740 EKAAFEDLKSKG------------LIPADATFAGHS----L---------------GEYA 1768
Query: 687 ASVAVAGLL---ASLRITKTRLSDNTILFQGAGE----GTASVAVAGLLASLRITKTRLS 739
A ++A ++ + + + R + Q A G ++ + + R+ + S
Sbjct: 1769 ALASLADVMSIESLVEVVFYR----GMTMQVAVPRDELGRSNYGMIAINPG-RVAAS-FS 1822
Query: 740 DNTILF--QGAGEGTAS-------------VAIAGLLASL 764
+ + + G+ T AG L +L
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL 1862
Score = 32.7 bits (74), Expect = 0.73
Identities = 36/197 (18%), Positives = 58/197 (29%), Gaps = 68/197 (34%)
Query: 56 SKGLIVKDRPEGGVTGH-------KVHYAKKHAPVKNLADVVKTVKPSILIEELKGLSQR 108
SKGLI D GH A V ++ +V+ V
Sbjct: 1749 SKGLIPAD---ATFAGHSLGEYAALASLAD----VMSIESLVEVVF-------------- 1787
Query: 109 DFLSSWLNRGPCLNCWGKRDFEQDKQGIS-YSIHA---SLGIADLCVMAMQKEGTSEQDA 164
RG + + +D+ G S Y + A A A+Q E+
Sbjct: 1788 -------YRGMTM----QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY--VVERVG 1834
Query: 165 RDKIWMVDSKGLIVKDRPEGG---VTGHKVHYAKKHAPVKNLADVVKTVK-PSILIGESC 220
+ W+V+ IV E G + + +V+ +K I
Sbjct: 1835 KRTGWLVE----IVNYNVENQQYVAAGDL-------RALDTVTNVLNFIKLQKI------ 1877
Query: 221 VNDVAGLLASLRITKTR 237
D+ L SL + +
Sbjct: 1878 --DIIELQKSLSLEEVE 1892
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase
(decarboxylating)); hypothetical protein, structural
genomics, PSI; 2.50A {Streptococcus pyogenes}
Length = 398
Score = 63.3 bits (155), Expect = 1e-10
Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 43/177 (24%)
Query: 562 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 619
V++DG +LGLGD+G +PV GK +L+ A AG+ +PI LD T+ D
Sbjct: 70 VISDGTAVLGLGDIGPEA-AMPVMEGKAALFKAFAGV---DAIPIVLD----TK----DT 117
Query: 620 LYIGLRQRRTTGQAYDDFIEEFMQAVVA---RYGQHVLIQFEDFANHSAFRFLDTYRNRY 676
EE + V A +G I ED + F
Sbjct: 118 -------------------EEIISIVKALAPTFGG---INLEDISAPRCFEIEQRLIKEC 155
Query: 677 C--VFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
VF+DD GTA V +A + SL++ K L + +I+ G G+A +++ L +
Sbjct: 156 HIPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGG--GSAGLSITRKLLAA 210
Score = 52.9 bits (128), Expect = 3e-07
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 225 AGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284
A + SL++ K L + +I+ G G A L I + G A + +VD G
Sbjct: 173 AAIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRK----LLAAG-----ATK-VTVVDKFG 222
Query: 285 LIVKDRPEGGVTGHKVHYAK---KHAPVKNLADVVK 317
+I + + H + AK + L D ++
Sbjct: 223 IINEQEAA-QLAPHHLDIAKVTNREFKSGTLEDALE 257
Score = 48.3 bits (116), Expect = 6e-06
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
+ SL++ K L + +I+ G G A L I + G A + +VD G+I
Sbjct: 175 IFNSLKLLKKSLDEVSIVVNGGGSAGLSITRK----LLAAG-----ATK-VTVVDKFGII 224
Query: 61 VKDRPEGGVTGHKVHYAK---KHAPVKNLADVVK 91
+ + H + AK + L D ++
Sbjct: 225 NEQEAA-QLAPHHLDIAKVTNREFKSGTLEDALE 257
Score = 41.7 bits (99), Expect = 7e-04
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 718 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNT-I 776
GTA V +A + SL++ K L + +I+ G G +A ++I L + TK + D I
Sbjct: 166 GTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGG--SAGLSITRKLLAAGATKVTVVDKFGI 223
Query: 777 LFQGSGEG 784
+ +
Sbjct: 224 INEQEAAQ 231
Score = 41.0 bits (97), Expect = 0.001
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 6/48 (12%)
Query: 380 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLD 425
V++DG +LGLGD+G +PV GK +L+ A AG+ +PI LD
Sbjct: 70 VISDGTAVLGLGDIGPEA-AMPVMEGKAALFKAFAGV---DAIPIVLD 113
Score = 37.9 bits (89), Expect = 0.013
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNT-I 809
GTA V +A + SL++ K L + +I+ +G G+A +++ L + TK + D I
Sbjct: 166 GTAIVVLAAIFNSLKLLKKSLDEVSIVV--NGGGSAGLSITRKLLAAGATKVTVVDKFGI 223
Query: 810 LFQGAGEDRNE 820
+ +
Sbjct: 224 INEQEAAQLAP 234
Score = 37.1 bits (87), Expect = 0.023
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 437 PQVFTADILKDMAAFNKRPIIFALSNPT 464
P V A+ + MA RP+IFA++NP
Sbjct: 268 PGVLKAEWISKMA---ARPVIFAMANPI 292
Score = 35.2 bits (82), Expect = 0.076
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 168 IWMVDSKGLIVKDRPEGGVTGHKVHYAK---KHAPVKNLADVVK 208
+ +VD G+I + + H + AK + L D ++
Sbjct: 215 VTVVDKFGIINEQEAA-QLAPHHLDIAKVTNREFKSGTLEDALE 257
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD,
structural genomics, NPPSFA; HET: NAD MES; 1.60A
{Pyrococcus horikoshii} PDB: 1ww8_A*
Length = 439
Score = 63.4 bits (155), Expect = 1e-10
Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 45/178 (25%)
Query: 562 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 619
VV+DG RILGLG++G G+PV GK L+ G+ PI + +P
Sbjct: 68 VVSDGSRILGLGNIGPLA-GLPVMEGKALLFKRFGGV---DAFPIMIKE--------QEP 115
Query: 620 LYIGLRQRRTTGQAYDDFIEEFMQAVVAR----YGQHVLIQFEDFANHSAFRFLDTYRNR 675
+ FI+ +V +G I ED A+ F L+ R
Sbjct: 116 ---------------NKFID-----IVKAIAPTFGG---INLEDIASPKCFYILERLREE 152
Query: 676 YC--VFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
VF+DD QGTA+V +AGLL +L++ ++S+ T+ GA G A A +L
Sbjct: 153 LDIPVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGA--GAAGFATLRILTEA 208
Score = 45.3 bits (108), Expect = 7e-05
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 15/100 (15%)
Query: 225 AGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVD--- 281
AGLL +L++ ++S+ T+ GAG A + A K + + +V+
Sbjct: 171 AGLLNALKVVGKKISEITLALFGAGAAGFATLRILTEAGVK--------PENVRVVELVN 222
Query: 282 SKGLIVKDRP-EGGVTGHKVHYAK---KHAPVKNLADVVK 317
K I+ + ++ K + +K
Sbjct: 223 GKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALK 262
Score = 40.6 bits (96), Expect = 0.002
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 718 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASL 764
GTA+V +AGLL +L++ ++S+ T+ GA G A A +L
Sbjct: 164 GTAAVVLAGLLNALKVVGKKISEITLALFGA--GAAGFATLRILTEA 208
Score = 40.6 bits (96), Expect = 0.002
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 15/98 (15%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVD---SK 57
LL +L++ ++S+ T+ GAG A + A K + + +V+ K
Sbjct: 173 LLNALKVVGKKISEITLALFGAGAAGFATLRILTEAGVK--------PENVRVVELVNGK 224
Query: 58 GLIVKDRP-EGGVTGHKVHYAK---KHAPVKNLADVVK 91
I+ + ++ K + +K
Sbjct: 225 PRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALK 262
Score = 39.9 bits (94), Expect = 0.003
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 380 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLD 425
VV+DG RILGLG++G G+PV GK L+ G+ PI +
Sbjct: 68 VVSDGSRILGLGNIGPLA-GLPVMEGKALLFKRFGGV---DAFPIMIK 111
Score = 37.6 bits (88), Expect = 0.015
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 437 PQVFTADILKDMAAFNKRPIIFALSNPT 464
P V ++ M + I+F L+NP
Sbjct: 275 PGVIKPQWIEKMN---EDAIVFPLANPV 299
Score = 34.9 bits (81), Expect = 0.12
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASL 797
GTA+V +AGLL +L++ ++S+ T+ G G A A +L
Sbjct: 164 GTAAVVLAGLLNALKVVGKKISEITLAL--FGAGAAGFATLRILTEA 208
Score = 33.3 bits (77), Expect = 0.35
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 784 GTASVAVAGVLASLRITKTRLSDNTILFQGAG 815
GTA+V +AG+L +L++ ++S+ T+ GAG
Sbjct: 164 GTAAVVLAGLLNALKVVGKKISEITLALFGAG 195
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme,
structural genomics, JCS protein structure initiative,
PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3
PDB: 2hae_A*
Length = 388
Score = 61.8 bits (151), Expect = 4e-10
Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 43/177 (24%)
Query: 562 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 619
VV+DG +LGLG++G YG +PV GK L+ A A I PI L +
Sbjct: 74 VVSDGSAVLGLGNIGPYG-ALPVMEGKAFLFKAFADI---DAFPICLS----ES----EE 121
Query: 620 LYIGLRQRRTTGQAYDDFIEEFMQAVVA---RYGQHVLIQFEDFANHSAFRFLDTYRNRY 676
E+ + V + +G I ED FR L
Sbjct: 122 -------------------EKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEEM 159
Query: 677 C--VFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
VF+DD QGTA V A L +L++T+ ++ + ++ G G A + L L
Sbjct: 160 NIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGI--GAAGYNIVKFLLDL 214
Score = 57.9 bits (141), Expect = 6e-09
Identities = 17/96 (17%), Positives = 41/96 (42%), Gaps = 13/96 (13%)
Query: 225 AGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKG 284
A L +L++T+ ++ + ++ G G A I + G ++ + VD KG
Sbjct: 177 AAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKF----LLDLG-----VKN-VVAVDRKG 226
Query: 285 LIVKDRPEGGVTGHKVHYAK---KHAPVKNLADVVK 317
++ ++ PE + + + A+ +L ++
Sbjct: 227 ILNENDPETCLNEYHLEIARITNPERLSGDLETALE 262
Score = 53.7 bits (130), Expect = 1e-07
Identities = 16/94 (17%), Positives = 40/94 (42%), Gaps = 13/94 (13%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
L +L++T+ ++ + ++ G G A I + G ++ + VD KG++
Sbjct: 179 FLNALKLTEKKIEEVKVVVNGIGAAGYNIVKF----LLDLG-----VKN-VVAVDRKGIL 228
Query: 61 VKDRPEGGVTGHKVHYAK---KHAPVKNLADVVK 91
++ PE + + + A+ +L ++
Sbjct: 229 NENDPETCLNEYHLEIARITNPERLSGDLETALE 262
Score = 41.0 bits (97), Expect = 0.001
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 718 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASL 764
GTA V A L +L++T+ ++ + ++ G G A I L L
Sbjct: 170 GTAVVVSAAFLNALKLTEKKIEEVKVVVNGI--GAAGYNIVKFLLDL 214
Score = 40.6 bits (96), Expect = 0.002
Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 168 IWMVDSKGLIVKDRPEGGVTGHKVHYAK---KHAPVKNLADVVK 208
+ VD KG++ ++ PE + + + A+ +L ++
Sbjct: 219 VVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALE 262
Score = 40.2 bits (95), Expect = 0.003
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 380 VVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGI 414
VV+DG +LGLG++G YG +PV GK L+ A A I
Sbjct: 74 VVSDGSAVLGLGNIGPYG-ALPVMEGKAFLFKAFADI 109
Score = 36.7 bits (86), Expect = 0.028
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 437 PQVFTADILKDMAAFNKRPIIFALSNPT 464
+ + +K M+ ++P+IFAL+NP
Sbjct: 273 GNILKPEWIKKMS---RKPVIFALANPV 297
Score = 35.2 bits (82), Expect = 0.089
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASL 797
GTA V A L +L++T+ ++ + ++ +G G A + L L
Sbjct: 170 GTAVVVSAAFLNALKLTEKKIEEVKVVV--NGIGAAGYNIVKFLLDL 214
Score = 32.9 bits (76), Expect = 0.44
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 784 GTASVAVAGVLASLRITKTRLSDNTILFQGAG 815
GTA V A L +L++T+ ++ + ++ G G
Sbjct: 170 GTAVVVSAAFLNALKLTEKKIEEVKVVVNGIG 201
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.4 bits (148), Expect = 1e-09
Identities = 88/623 (14%), Positives = 163/623 (26%), Gaps = 224/623 (35%)
Query: 205 DVVKTVKPSILIGESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQ 264
D++ + + + C DV + S+ ++K + I+ + +++ Q
Sbjct: 20 DILSVFEDAFVDNFDC-KDVQDMPKSI-LSKEEIDH--IIMSKDAVSGTLRLFWTLLSKQ 75
Query: 265 KEGTS----EQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGM 320
+E E + +++ +K + Y ++ + N V
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSP----IKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 321 AFSIEE----RQAL---------GIHGL-------LPAAVKSQDEQLHLCK------LNV 354
++ RQAL I G+ + V ++ LN+
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-CLSYKVQCKMDFKIFWLNL 189
Query: 355 DRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGI 414
P LQ L + D + I + S+ L +
Sbjct: 190 KNCNSPETVLEMLQKLLYQID------------PNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 415 ---KPHQ-CLPITLDVGTNWRRAAAIPQVFTADILKDMAAFN----------KRPIIFAL 460
KP++ CL + L+V A AFN + + L
Sbjct: 238 LKSKPYENCLLVLLNV---Q----------NAKAWN---AFNLSCKILLTTRFKQVTDFL 281
Query: 461 SNPTSKAECTAEQAYVNT--DGRGVFA---------------SGSPF-----------DP 492
S T+ + T + + + + +P
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 493 VTYKG-----------------KTFTPG--QEYVVEL--MPI-VYTPTVGLA-------- 522
T+ P ++ L P + PT+ L+
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 523 ---------CQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGLG 573
KY L+ ++P+ ISI ++ ++ E + +V +
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKLENEYALHRSIV---DH----- 452
Query: 574 DLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQA 633
Y +P LD Y
Sbjct: 453 ----------------YNIPKTFDSDDLIPPYLDQ------------YF----------- 473
Query: 634 YDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFR--FLDTYRNRYCVF------NDDIQG 685
Y I G H L E + FR FLD +R F +D
Sbjct: 474 YS-HI-----------GHH-LKNIEHPERMTLFRMVFLD-FR-----FLEQKIRHDSTAW 514
Query: 686 TASVAVAGLLASLRITKTRLSDN 708
AS ++ L L+ K + DN
Sbjct: 515 NASGSILNTLQQLKFYKPYICDN 537
Score = 46.4 bits (109), Expect = 4e-05
Identities = 61/401 (15%), Positives = 112/401 (27%), Gaps = 120/401 (29%)
Query: 46 DARDKIWMVDSKGLIVKD---RPEGGVTGHKVHYAKKHA----PVKNLADVV-------K 91
+ RD+++ + + K R + ++ P KN+ ++ K
Sbjct: 114 EQRDRLY--NDNQVFAKYNVSRLQ------PYLKLRQALLELRPAKNV--LIDGVLGSGK 163
Query: 92 TVKPSILIEELKGLSQRDFLSSWLNRGPCLNCWGKRDFEQDKQGISYSIHASLGIADLCV 151
T + K + DF WLN NC + Q + Y I + +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLK---NCNSPETVLEMLQKLLYQIDPNW-TSRSDH 219
Query: 152 MAMQKEGTSEQDARDKIWMVDS---KGLIVKDRPEGGVTGHKVHYAKKHAPV-------- 200
+ K A + + L+V V K
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLL----NV------QNAKAWNAFNLSCKIL 269
Query: 201 -----KNLADVVKTVKPSILIGESCVN-----DVAGLLAS-LRITKTRLSDNTILFQGAG 249
K + D + + + + +V LL L L
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--------- 320
Query: 250 EASLGIADLCVM--AMQKEGTS-----EQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHY 302
E + ++G + + DK+ + L V + E ++ +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-----YRKMF 375
Query: 303 AK-----KHA--PVKNLA------------DVVKTGMAFSIEERQA----LGIHGL-LPA 338
+ A P L+ VV +S+ E+Q + I + L
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 339 AVKSQDE-QLHLCKLNVDRYE------------DPLNKYIY 366
VK ++E LH + VD Y L++Y Y
Sbjct: 436 KVKLENEYALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Score = 33.7 bits (76), Expect = 0.33
Identities = 32/237 (13%), Positives = 70/237 (29%), Gaps = 70/237 (29%)
Query: 630 TGQ---AYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFN----DD 682
TG+ Y D + F A V ++F D ++ + + D
Sbjct: 11 TGEHQYQYKDILSVFEDAFV-----------DNF---DCKDVQDMPKS---ILSKEEIDH 53
Query: 683 IQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAG--------LLASLRIT 734
I +++ ++ T T+L + E V L++ ++
Sbjct: 54 I----------IMSKDAVSGTLRLFWTLLSK--QEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 735 KTRLSDNTILFQGAGEGTA---------SVAIAGLLASLRITKTRLSDNTILF----QGS 781
+ + S T ++ + +V+ LR L + GS
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 782 GEGTASVAVAGVLASLRITKTRLSDNTILFQGAGEDRN--------ERLFYRLLSEY 830
G+ + V S ++ D I + + ++L Y++ +
Sbjct: 162 GK---TWVALDVCLSYKVQCKM--DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Score = 33.7 bits (76), Expect = 0.33
Identities = 55/394 (13%), Positives = 100/394 (25%), Gaps = 157/394 (39%)
Query: 5 LRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS-----KGL 59
LRI + +L E L + + ++ ++ K L
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLL--------------NVQNA-KAWNAFNLSCKIL 269
Query: 60 I------VKDRPEGGVTGHK--VHY-------------AKK-HAPVKNLADVVKTVKP-- 95
+ V D T H H+ K ++L V T P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 96 -SILIEELKGLSQRDFLSSWLNRGPCLNCWGKRDFEQDKQGISYSIHA-----------S 143
SI+ E + RD L++W N W + ++ I S++
Sbjct: 330 LSIIAESI-----RDGLATWDN-------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 144 LGI--AD-------LCVMAMQKEGTSEQDARDKIWMVD---SKGLIVKDRPEGGVTGH-- 189
L + L ++ + D +V+ L+ K E ++
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVI---KSDVMV---VVNKLHKYSLVEKQPKESTISIPSI 431
Query: 190 ------------KVH------YAKK-----------------------HAPVKNLADVVK 208
+H Y H + +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 209 TVKPSIL-------------IGESCVNDVAGLLASLRITKTRLSDN---------TIL-F 245
+ L + + L L+ K + DN IL F
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 246 QGAGEASLGIA---DLCVMAMQKEGTS--EQDAR 274
E +L + DL +A+ E + E+ +
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 37.4 bits (87), Expect = 0.019
Identities = 36/164 (21%), Positives = 57/164 (34%), Gaps = 24/164 (14%)
Query: 654 LIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLR-ITKTRLSDNTILF 712
L + N R + RNR ++ + A S R + ++ N I
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNR-------LENGSMKEWAKTFQSHRLLHTVKMVQNGI-- 199
Query: 713 QGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLR-ITKTRL 771
EG + + GL + L DNT G+ A+A L S + + L
Sbjct: 200 -RP-EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS------SALAIALKSWPNLRELGL 251
Query: 772 SDNTILFQGSGEGTASVAVA-GVLASLRITKTRLSDNTILFQGA 814
+D + S G A+V A L ++ + RL N I
Sbjct: 252 NDCLL----SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291
Score = 32.0 bits (73), Expect = 0.72
Identities = 28/167 (16%), Positives = 46/167 (27%), Gaps = 28/167 (16%)
Query: 661 ANHSAFRFLDTYRNRYCVFNDDIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTA 720
A+ + D+I + + LL ++ RLSDN G
Sbjct: 57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-----GPTAQ 111
Query: 721 SVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTR---------- 770
+ L + L +N + Q IA L L + K
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAG------AKIARALQELAVNKKAKNAPPLRSII 165
Query: 771 LSDNTILFQGSGEGTASVAVAGVLASLR-ITKTRLSDNTILFQGAGE 816
N + G+ A S R + ++ N I +G
Sbjct: 166 CGRNRL-----ENGSMK-EWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.12
Identities = 15/54 (27%), Positives = 18/54 (33%), Gaps = 28/54 (51%)
Query: 326 ERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYED---PLNKYIYLQALAVKTDI 376
E+QAL K L KL Y D P ALA+K +
Sbjct: 18 EKQAL----------KKLQASL---KL----YADDSAP--------ALAIKATM 46
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 33.7 bits (77), Expect = 0.30
Identities = 51/251 (20%), Positives = 82/251 (32%), Gaps = 77/251 (30%)
Query: 532 RPRGL----FISIHDKGHISEVLRNWPETDI---RAIVVTDGERILGLGDLGAYGMG--- 581
+PR F + + ++ E + R IVVT G ++G +G
Sbjct: 784 QPRANIQLDFPELKPYKQVKQIAPAELEGLLDLERVIVVT------GFAEVGPWGSARTR 837
Query: 582 ---IPVGKLSL--YTALA---G-IKPH----QCLPITLDVGTNTQQLLDDPLYIGLRQRR 628
G+ SL +A G I H + P T V + T++ +DD
Sbjct: 838 WEMEAFGEFSLEGCVEMAWIMGFISYHNGNLKGRPYTGWVDSKTKEPVDD---------- 887
Query: 629 TTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFL-DTYRNRYCVFNDDIQGTA 687
++ V A+Y +L HS R + N Y + +
Sbjct: 888 ----------KD----VKAKYETSIL-------EHSGIRLIEPELFNGYNP--EKKEMIQ 924
Query: 688 SVAVAGLL-------ASLRITKTRLSDNTILFQGAGEGTASVA-VAGLLASLRITKTRLS 739
V V L + K + D +F+ G SV + G A+L I K
Sbjct: 925 EVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKG--ATLYIPKALRF 982
Query: 740 DNTILFQGAGE 750
D + AG+
Sbjct: 983 DRLV----AGQ 989
Score = 30.6 bits (69), Expect = 3.0
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 704 RLSDNTILFQGAGEGTASVA---VAGLL---ASLRITKTRLSDNTILF 745
D +L GAG+G S+ + GLL A + +T +R S +
Sbjct: 473 TFKDKYVLITGAGKG--SIGAEVLQGLLQGGAKVVVTTSRFSKQVTDY 518
Score = 30.2 bits (68), Expect = 4.0
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 737 RLSDNTILFQGAGEGTASVAI-AGLL---ASLRITKTRLSDNTILF 778
D +L GAG+G+ + GLL A + +T +R S +
Sbjct: 473 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDY 518
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45,
flexible regions, monomer cycle; NMR {Homo sapiens}
Length = 165
Score = 30.5 bits (68), Expect = 1.3
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 332 IHGLLPAA--VKSQDEQLHLCKLNVD-RYEDPLNKYIY---LQALAVKTDIRAIVVTDGE 385
G+ AA + + + LC L D + + I+ +QA + DI + V++
Sbjct: 37 TVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPG 96
Query: 386 R---ILGLGDLGAYG 397
R +L L
Sbjct: 97 RLAELLLLETDAGPA 111
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 30.6 bits (70), Expect = 1.7
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSE 270
D G + L+ + D IL GAG AS GI + K
Sbjct: 100 DGIGYVNGLKQIYEGIEDAYILILGAGGASKGI----ANELYKIVRPT 143
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma;
beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Length = 167
Score = 29.7 bits (66), Expect = 2.2
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 332 IHGLLPAA--VKSQDEQLHLCKL--NVDRYEDPLNK--YIYLQALAVKTDIRAIVVTDGE 385
G+ +A + + + C L + D + + +QA + DI + V D +
Sbjct: 48 TAGVYESAKVLNVDPDNVTFCVLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQ 107
Query: 386 R---ILGLGDLG 394
R I+G G+
Sbjct: 108 RLAAIVGAGEEA 119
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 30.3 bits (69), Expect = 2.8
Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 15/111 (13%)
Query: 705 LSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASL 764
LSDN + G + L R+ K +L ++ +A +L +
Sbjct: 120 LSDNLL----GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE------PLASVLRAK 169
Query: 765 R-ITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTILFQGA 814
+ +S+N I + G + + ++ +L +
Sbjct: 170 PDFKELTVSNNDI----NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 29.7 bits (67), Expect = 3.0
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 639 EEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASV 689
+ + ++ RY + I F+D+ + L + + + QG +
Sbjct: 138 PQAVNSIAKRYSTNGKITFDDYI--ACCVKLRALTDSFRRRDTAQQGVVNF 186
>3sqz_A Putative hydroxymethylglutaryl-COA synthase; thiolase fold, HMG_COA
synthase, transferase; HET: COA; 1.20A {Streptococcus
mutans} PDB: 3leh_A
Length = 425
Score = 30.0 bits (67), Expect = 3.1
Identities = 23/137 (16%), Positives = 41/137 (29%), Gaps = 12/137 (8%)
Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
+ + Y D ++ R+ L F F H F L +
Sbjct: 232 GMYSTKQYLDMLKTTWAEYQKRFDVS-LTDFAAFCFHLPFPKLALKGFNKIMDKQVPSDL 290
Query: 687 ASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDNTILFQ 746
AS+ + + N T S+ + GLL+ L ++ ++ + I
Sbjct: 291 QEKLKVNFEASILYS--KQIGNI--------YTGSLFL-GLLSLLENSQNLVAGDKIALF 339
Query: 747 GAGEGTASVAIAGLLAS 763
G G + G L
Sbjct: 340 SYGSGAVAEIFTGTLVK 356
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 29.3 bits (66), Expect = 3.2
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 639 EEFMQAVVARYGQHVLIQFEDFAN--------HSAFRFLDTYRNRYCVFNDD--IQGTAS 688
+ + +V RY ++ I F+D+ FR D + F D +QGT +
Sbjct: 105 PQTLTTIVKRYSKNGRIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMA 164
Query: 689 V 689
+
Sbjct: 165 I 165
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell
cycle; 1.70A {Mus musculus} PDB: 2wal_A
Length = 146
Score = 29.2 bits (65), Expect = 3.3
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 310 KNLADVVKTGMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKL--NVDRYEDPLNK--YI 365
K L +++ + + G++ + + + C L + + D + +
Sbjct: 11 KALHELLLSAQ---RQGCLTAGVYESA-KVLNVDPDNVTFCVLAADEEDEGDIALQIHFT 66
Query: 366 YLQALAVKTDIRAIVVTDGER---ILGLGDLG 394
+QA + DI + V D +R I+G + G
Sbjct: 67 LIQAFCCENDIDIVRVGDVQRLAAIVGSDEEG 98
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 28.9 bits (65), Expect = 4.1
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 639 EEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGTASV 689
+ + ++ RY I F+D+ + L + + + QG +
Sbjct: 107 PQTVNSIAKRYSTSGKITFDDYI--ACCVKLRALTDSFRRRDSAQQGMVNF 155
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 28.6 bits (65), Expect = 4.7
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 7/37 (18%)
Query: 781 SGEGTASVAVAGV-LASLRITKTRLSDNTILFQGAGE 816
S G S+ + + N IL G G
Sbjct: 1 SNAGKVSIPSIVYDIVR------KNGGNKILLVGNGM 31
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 29.4 bits (67), Expect = 4.7
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSE 270
D G L + + +N + G+G A+ + ++ +
Sbjct: 105 DYIGFGKMLSKFRVEIKNNICVVLGSGGAARAVL----QYLKDNFAKD 148
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 29.1 bits (66), Expect = 5.9
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSE 270
D G + +L+ + + GAG A+ I + +G E
Sbjct: 137 DGTGYMRALKEAGHDIIGKKMTICGAGGAATAIC----IQAALDGVKE 180
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for
structural genomics of infec diseases, csgid; HET: EPE;
1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A*
3pgj_A* 3o8q_B*
Length = 281
Score = 28.7 bits (65), Expect = 7.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIA 256
D GL+ L + L TIL GAG A+ G+
Sbjct: 109 DGEGLVQDLLAQQVLLKGATILLIGAGGAARGVL 142
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft
separation, oxidoreductase; HET: NAP; 1.50A {Escherichia
coli} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 28.6 bits (65), Expect = 8.3
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIA 256
D GLL+ L IL GAG AS G+
Sbjct: 102 DGVGLLSDLERLSFIRPGLRILLIGAGGASRGVL 135
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 28.6 bits (65), Expect = 8.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIA 256
D G L SL+ + + +IL GAG AS +
Sbjct: 112 DWIGFLKSLKSLIPEVKEKSILVLGAGGASRAVI 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.398
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,911,409
Number of extensions: 834510
Number of successful extensions: 2297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2250
Number of HSP's successfully gapped: 115
Length of query: 848
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 746
Effective length of database: 3,853,851
Effective search space: 2874972846
Effective search space used: 2874972846
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)