RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14377
(848 letters)
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Length = 257
Score = 299 bits (767), Expect = 3e-96
Identities = 128/179 (71%), Positives = 150/179 (83%)
Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
+ MPIVYTPTVGLACQ YGL FRRPRGLFI+IHD+GHI+ +L++WPE+ I+AIVV
Sbjct: 79 TSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVV 138
Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
TDGERILGLGDLG YGMGIPVGKL+LYTA G+KPHQCLP+ LDVGT+ + LL DPLYIG
Sbjct: 139 TDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIG 198
Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDD 682
LR +R GQAYDD ++EFM+AV +RYG + LIQFEDFAN +AFR L YRN+YC FNDD
Sbjct: 199 LRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYRNKYCTFNDD 257
Score = 110 bits (276), Expect = 2e-27
Identities = 65/172 (37%), Positives = 87/172 (50%), Gaps = 61/172 (35%)
Query: 319 GMAFSIEERQALGIHGLLPA------------------------------AVKSQDEQL- 347
GMAF++EERQ L IHGLLP +++ ++E+L
Sbjct: 15 GMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSLQDRNEKLF 74
Query: 348 -HLCKLNVDR--------------------YEDPLNKYIY---------LQALAVKTDIR 377
+ +++R + P +I + ++ I+
Sbjct: 75 YKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIK 134
Query: 378 AIVVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTN 429
AIVVTDGERILGLGDLG YGMGIPVGKL+LYTA G+KPHQCLP+ LDVGT+
Sbjct: 135 AIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTD 186
Score = 60.1 bits (146), Expect = 2e-10
Identities = 22/33 (66%), Positives = 28/33 (84%)
Query: 816 EDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
+DRNE+LFY++L+ + MPIVYTPTVGLACQ
Sbjct: 67 QDRNEKLFYKVLTSDIERFMPIVYTPTVGLACQ 99
>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic
enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Length = 294
Score = 297 bits (762), Expect = 6e-95
Identities = 114/181 (62%), Positives = 143/181 (79%), Gaps = 2/181 (1%)
Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDK--GHISEVLRNWPETDIRAI 561
++V ELMPIVYTPTVGLACQ +G I+R+P+GL+I+I+D I ++L NW E D+RAI
Sbjct: 114 CDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAI 173
Query: 562 VVTDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLY 621
VVTDGERILGLGDLGAYG+GIPVGKL+LY AL G++P CLP+ LDVGTN LL+DP Y
Sbjct: 174 VVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFY 233
Query: 622 IGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFND 681
IGLR +R G+ YD ++ FM+A +YGQ LIQFEDFAN +AFR LD Y+++Y +FND
Sbjct: 234 IGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFND 293
Query: 682 D 682
D
Sbjct: 294 D 294
Score = 114 bits (288), Expect = 9e-29
Identities = 72/200 (36%), Positives = 97/200 (48%), Gaps = 68/200 (34%)
Query: 298 HKVHYAKKHAPVKNLADVVKT-----GMAFSIEERQALGIHGLLPAAVKS---------- 342
+K++ ++ P K A+++K GM FS+ ERQ LG+HGLLP A +
Sbjct: 24 YKLYRPERVTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVIT 83
Query: 343 --------------------QDEQL--HLCKLNVDR--------------------YEDP 360
++E+L + +V Y P
Sbjct: 84 KLREQPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKP 143
Query: 361 LNKYIYLQALAV-----------KTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLSLYT 409
YI + +V + D+RAIVVTDGERILGLGDLGAYG+GIPVGKL+LY
Sbjct: 144 KGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYV 203
Query: 410 ALAGIKPHQCLPITLDVGTN 429
AL G++P CLP+ LDVGTN
Sbjct: 204 ALGGVQPKWCLPVLLDVGTN 223
Score = 60.6 bits (147), Expect = 2e-10
Identities = 25/33 (75%), Positives = 31/33 (93%)
Query: 816 EDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
+DRNE+LFYR++ ++V ELMPIVYTPTVGLACQ
Sbjct: 102 QDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQ 134
>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic
enzyme {Human (Homo sapiens) [TaxId: 9606]}
Length = 259
Score = 293 bits (752), Expect = 5e-94
Identities = 119/179 (66%), Positives = 144/179 (80%)
Query: 504 QEYVVELMPIVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVV 563
Q+ + LMPIVYTPTVGLAC +YG IFRRP+GLFISI D+GH+ ++ NWPE ++A+VV
Sbjct: 81 QDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVV 140
Query: 564 TDGERILGLGDLGAYGMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 623
TDGERILGLGDLG YGMGIPVGKL LYTA AGI+P +CLP+ +DVGT+ LL DP Y+G
Sbjct: 141 TDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMG 200
Query: 624 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDD 682
L Q+R Q YDD I+EFM+A+ RYG++ LIQFEDF NH+AFRFL YR +YC FNDD
Sbjct: 201 LYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDD 259
Score = 89.0 bits (221), Expect = 3e-20
Identities = 42/83 (50%), Positives = 55/83 (66%), Gaps = 7/83 (8%)
Query: 347 LHLCKLNVDRYEDPLNKYIYLQALAVKTDIRAIVVTDGERILGLGDLGAYGMGIPVGKLS 406
L + + ++ + ++A+VVTDGERILGLGDLG YGMGIPVGKL
Sbjct: 113 LFISISDRGHVRSIVDNWPE-------NHVKAVVVTDGERILGLGDLGVYGMGIPVGKLC 165
Query: 407 LYTALAGIKPHQCLPITLDVGTN 429
LYTA AGI+P +CLP+ +DVGT+
Sbjct: 166 LYTACAGIRPDRCLPVCIDVGTD 188
Score = 81.3 bits (201), Expect = 1e-17
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 319 GMAFSIEERQALGIHGLLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQAL 370
GMAF+++ERQ LG+ GLLP +++QD Q N+ + PL KYIY+ +
Sbjct: 17 GMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGI 68
Score = 60.5 bits (147), Expect = 1e-10
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 790 VAGVLASLRITKTRLSDNTILFQGAGEDRNERLFYRLLSEYVVELMPIVYTPTVGLACQ 848
+L+ + L + ++RNE+LFYR+L + + LMPIVYTPTVGLAC
Sbjct: 45 ALRFHRNLKKMTSPLEKYIYIM--GIQERNEKLFYRILQDDIESLMPIVYTPTVGLACS 101
>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic
enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Length = 308
Score = 95.8 bits (238), Expect = 3e-22
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 4/117 (3%)
Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
VAGLL R+TK +S LF GAG AS GIA++ V MQ EG S+++A ++I+++D
Sbjct: 9 VAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDID 68
Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAFSIEERQALGIHGLLPAAV 340
GL+ K+R E + V +AK ++ +V++ ++ A + G V
Sbjct: 69 GLVTKNRKE--MNPRHVQFAKDMPETTSILEVIRAARPGAL--IGASTVRGAFNEEV 121
Score = 91.6 bits (227), Expect = 1e-20
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
LL R+TK +S LF GAG AS GIA++ V MQ EG S+++A ++I+++D GL+
Sbjct: 12 LLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLV 71
Query: 61 VKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILIEEL--KGLSQRDFLSSWLNRG 118
K+R E + V +AK ++ +V++ +P LI +G + + +
Sbjct: 72 TKNRKE--MNPRHVQFAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEIN 129
Query: 119 P 119
Sbjct: 130 E 130
Score = 76.9 bits (189), Expect = 8e-16
Identities = 39/72 (54%), Positives = 51/72 (70%)
Query: 433 AAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDP 492
A+ + F ++++ MA N+RPIIFALSNPTSKAECTAE+AY T+G ++ASGSPF
Sbjct: 110 ASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPN 169
Query: 493 VTYKGKTFTPGQ 504
G T+ PGQ
Sbjct: 170 FELNGHTYKPGQ 181
Score = 66.5 bits (162), Expect = 2e-12
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVK 201
AS GIA++ V MQ EG S+++A ++I+++D GL+ K+R E + V +AK
Sbjct: 36 ASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKE--MNPRHVQFAKDMPETT 93
Query: 202 NLADVVKTVKPSILIGESCVNDV 224
++ +V++ +P LIG S V
Sbjct: 94 SILEVIRAARPGALIGASTVRGA 116
Score = 61.9 bits (150), Expect = 6e-11
Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 683 IQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
IQGTASV VAGLL R+TK +S LF GAG AS +A ++
Sbjct: 1 IQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGA--ASTGIAEMIVHQ 47
Score = 57.7 bits (139), Expect = 2e-09
Identities = 23/47 (48%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 718 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASL 764
GTASV VAGLL R+TK +S LF GAG AS IA ++
Sbjct: 3 GTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGA--ASTGIAEMIVHQ 47
Score = 51.5 bits (123), Expect = 2e-07
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASL 797
GTASV +AGLL R+TK +S LF G G AS +A ++
Sbjct: 3 GTASVIVAGLLTCTRVTKKLVSQEKYLF--FGAGAASTGIAEMIVHQ 47
Score = 48.0 bits (114), Expect = 2e-06
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 784 GTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
GTASV VAG+L R+TK +S LF GAG
Sbjct: 3 GTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGA 35
>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic
enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Length = 298
Score = 90.8 bits (225), Expect = 1e-20
Identities = 63/99 (63%), Positives = 77/99 (77%), Gaps = 2/99 (2%)
Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
VAGLLA+LRITK RLSD+T+LFQGAGEA+LGIA+L VMAMQKEG S+++A +IWMVDSK
Sbjct: 9 VAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSK 68
Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGMAF 322
GLIVK R +T K H+A +H +KNL D+VK
Sbjct: 69 GLIVKGRAS--LTPEKEHFAHEHCEMKNLEDIVKDIKPT 105
Score = 90.1 bits (223), Expect = 3e-20
Identities = 64/99 (64%), Positives = 81/99 (81%), Gaps = 2/99 (2%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
LLA+LRITK RLSD+T+LFQGAGEA+LGIA+L VMAMQKEG S+++A +IWMVDSKGLI
Sbjct: 12 LLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLI 71
Query: 61 VKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILI 99
VK R +T K H+A +H +KNL D+VK +KP++LI
Sbjct: 72 VKGRAS--LTPEKEHFAHEHCEMKNLEDIVKDIKPTVLI 108
Score = 70.0 bits (171), Expect = 1e-13
Identities = 55/73 (75%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Query: 433 AAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDP 492
AAI FT IL+DMAAFNKRPIIFALSNPTSKAECTAEQ Y T+GRG+FASGSPFDP
Sbjct: 110 VAAIGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFDP 169
Query: 493 VTYK-GKTFTPGQ 504
VT G+T PGQ
Sbjct: 170 VTLPSGQTLYPGQ 182
Score = 65.8 bits (160), Expect = 3e-12
Identities = 45/83 (54%), Positives = 61/83 (73%), Gaps = 2/83 (2%)
Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVK 201
A+LGIA+L VMAMQKEG S+++A +IWMVDSKGLIVK R +T K H+A +H +K
Sbjct: 36 AALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRAS--LTPEKEHFAHEHCEMK 93
Query: 202 NLADVVKTVKPSILIGESCVNDV 224
NL D+VK +KP++LIG + +
Sbjct: 94 NLEDIVKDIKPTVLIGVAAIGGA 116
Score = 61.6 bits (149), Expect = 9e-11
Identities = 34/49 (69%), Positives = 41/49 (83%), Gaps = 2/49 (4%)
Query: 683 IQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
IQGTASVAVAGLLA+LRITK RLSD+T+LFQGAGE A++ +A L+
Sbjct: 1 IQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGE--AALGIANLIVMA 47
Score = 57.3 bits (138), Expect = 2e-09
Identities = 33/48 (68%), Positives = 40/48 (83%), Gaps = 2/48 (4%)
Query: 717 EGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASL 764
+GTASVAVAGLLA+LRITK RLSD+T+LFQGAGE A++ IA L+
Sbjct: 2 QGTASVAVAGLLAALRITKNRLSDHTVLFQGAGE--AALGIANLIVMA 47
Score = 50.8 bits (121), Expect = 3e-07
Identities = 27/48 (56%), Positives = 37/48 (77%), Gaps = 2/48 (4%)
Query: 750 EGTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASL 797
+GTASVA+AGLLA+LRITK RLSD+T+LF G G A++ +A ++
Sbjct: 2 QGTASVAVAGLLAALRITKNRLSDHTVLF--QGAGEAALGIANLIVMA 47
Score = 48.1 bits (114), Expect = 2e-06
Identities = 28/34 (82%), Positives = 33/34 (97%)
Query: 783 EGTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
+GTASVAVAG+LA+LRITK RLSD+T+LFQGAGE
Sbjct: 2 QGTASVAVAGLLAALRITKNRLSDHTVLFQGAGE 35
>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic
enzyme {Human (Homo sapiens) [TaxId: 9606]}
Length = 294
Score = 88.5 bits (219), Expect = 9e-20
Identities = 41/100 (41%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
LLA+ ++ +S++ ILF GAGEA+LGIA+L VM+M + G SEQ+A+ KIWM D GL+
Sbjct: 12 LLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLL 71
Query: 61 VKDRPEGGVTGHK-VHYAKKHAPVKNLADVVKTVKPSILI 99
VK R + + ++ + D V +KPS +I
Sbjct: 72 VKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTII 111
Score = 87.3 bits (216), Expect = 2e-19
Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
+AGLLA+ ++ +S++ ILF GAGEA+LGIA+L VM+M + G SEQ+A+ KIWM D
Sbjct: 9 LAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKY 68
Query: 284 GLIVKDRPEGGVTGHK-VHYAKKHAPVKNLADVVK 317
GL+VK R + + ++ + D V
Sbjct: 69 GLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVN 103
Score = 70.0 bits (171), Expect = 2e-13
Identities = 43/73 (58%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Query: 433 AAAIPQVFTADILKDMAAFNKRPIIFALSNPTSKAECTAEQAYVNTDGRGVFASGSPFDP 492
A ++FT D+++ MA+ N+RP+IFALSNPT++AECTAE+AY T+GR +FASGSPF P
Sbjct: 113 VAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGP 172
Query: 493 VTYK-GKTFTPGQ 504
V G+ FTPGQ
Sbjct: 173 VKLTDGRVFTPGQ 185
Score = 62.3 bits (151), Expect = 5e-11
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHK-VHYAKKHAPV 200
A+LGIA+L VM+M + G SEQ+A+ KIWM D GL+VK R + + ++ +
Sbjct: 36 AALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIP 95
Query: 201 KNLADVVKTVKPSILIGESCVNDV 224
D V +KPS +IG + +
Sbjct: 96 DTFEDAVNILKPSTIIGVAGAGRL 119
Score = 61.2 bits (148), Expect = 1e-10
Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 683 IQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASL 731
IQGTA+VA+AGLLA+ ++ +S++ ILF GAGE A++ +A L+
Sbjct: 1 IQGTAAVALAGLLAAQKVISKPISEHKILFLGAGE--AALGIANLIVMS 47
Score = 57.3 bits (138), Expect = 2e-09
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 718 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASL 764
GTA+VA+AGLLA+ ++ +S++ ILF GAGE A++ IA L+
Sbjct: 3 GTAAVALAGLLAAQKVISKPISEHKILFLGAGE--AALGIANLIVMS 47
Score = 51.1 bits (122), Expect = 2e-07
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASL 797
GTA+VA+AGLLA+ ++ +S++ ILF G G A++ +A ++
Sbjct: 3 GTAAVALAGLLAAQKVISKPISEHKILF--LGAGEAALGIANLIVMS 47
Score = 48.4 bits (115), Expect = 2e-06
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 784 GTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
GTA+VA+AG+LA+ ++ +S++ ILF GAGE
Sbjct: 3 GTAAVALAGLLAAQKVISKPISEHKILFLGAGE 35
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme)
{Thermotoga maritima [TaxId: 2336]}
Length = 222
Score = 68.6 bits (167), Expect = 2e-13
Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 224 VAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSK 283
A L +L++T+ ++ + ++ G G A I + K + VD K
Sbjct: 10 SAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVK----------NVVAVDRK 59
Query: 284 GLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVV 316
G++ ++ PE + + + A+ P + D+
Sbjct: 60 GILNENDPETCLNEYHLEIARITNPERLSGDLE 92
Score = 65.1 bits (158), Expect = 2e-12
Identities = 17/99 (17%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
L +L++T+ ++ + ++ G G A I + K + VD KG++
Sbjct: 13 FLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVK----------NVVAVDRKGIL 62
Query: 61 VKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKPSILI 99
++ PE + + + A+ P + D+ ++ +
Sbjct: 63 NENDPETCLNEYHLEIARITNPERLSGDLETALEGADFF 101
Score = 61.2 bits (148), Expect = 4e-11
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 682 DIQGTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAGLLASLRITKTRLSDN 741
D QGTA V A L +L++T+ ++ + ++ G G A + L L + D
Sbjct: 1 DQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGA--AGYNIVKFLLDLGVKNVVAVDR 58
Query: 742 TILF 745
+
Sbjct: 59 KGIL 62
Score = 55.1 bits (132), Expect = 5e-09
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 718 GTASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAIAGLLASLRITKTRLSDNTIL 777
GTA V A L +L++T+ ++ + ++ G G A I L L + D +
Sbjct: 4 GTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGA--AGYNIVKFLLDLGVKNVVAVDRKGI 61
Query: 778 F 778
Sbjct: 62 L 62
Score = 49.7 bits (118), Expect = 3e-07
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 751 GTASVAIAGLLASLRITKTRLSDNTILFQGSGEGTASVAVAGVLASLRITKTRLSDNTIL 810
GTA V A L +L++T+ ++ + ++ +G G A + L L + D +
Sbjct: 4 GTAVVVSAAFLNALKLTEKKIEEVKVVV--NGIGAAGYNIVKFLLDLGVKNVVAVDRKGI 61
Query: 811 F 811
Sbjct: 62 L 62
Score = 49.3 bits (117), Expect = 4e-07
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 784 GTASVAVAGVLASLRITKTRLSDNTILFQGAGE 816
GTA V A L +L++T+ ++ + ++ G G
Sbjct: 4 GTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGA 36
Score = 40.8 bits (95), Expect = 3e-04
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 415 KPHQCLPITLDVGTNWRRAAAIPQVFTADIL--KDMAAFNKRPIIFALSNPTSKAECTAE 472
+ ++ D+ T A V +IL + + +++P+IFAL+NP + +
Sbjct: 80 RITNPERLSGDLETALEGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPVPEIDPE-- 137
Query: 473 QAYVNTDGRGVFASGSPFDPVTYKGKTFTPG 503
G + A+G P PG
Sbjct: 138 --LAREAGAFIVATGRSDHPNQVNNLLAFPG 166
Score = 36.2 bits (83), Expect = 0.009
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 142 ASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLIVKDRPEGGVTGHKVHYAKKHAPVK 201
A I + K + VD KG++ ++ PE + + + A+ P +
Sbjct: 37 AGYNIVKFLLDLGVK----------NVVAVDRKGILNENDPETCLNEYHLEIARITNPER 86
Query: 202 NLADVVKTVKPSILIG 217
D+ ++ +
Sbjct: 87 LSGDLETALEGADFFI 102
>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme)
{Thermotoga maritima [TaxId: 2336]}
Length = 154
Score = 40.5 bits (95), Expect = 2e-04
Identities = 40/173 (23%), Positives = 56/173 (32%), Gaps = 52/173 (30%)
Query: 513 IVYTPTVGLACQKYGLIFRRPRGLFISIHDKGHISEVLRNWPETDIRAIVVTDGERILGL 572
++YTP V + P +K ++ N VV+DG +LGL
Sbjct: 30 LLYTPGVADVARA---CAEDP--------EKTYVYTSRWNT------VAVVSDGSAVLGL 72
Query: 573 GDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTT 630
G++G YG +PV GK L+ A A I PI L
Sbjct: 73 GNIGPYG-ALPVMEGKAFLFKAFADID---AFPICLSE---------------------- 106
Query: 631 GQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRY--CVFND 681
E+ + V + I ED FR L VF+D
Sbjct: 107 -----SEEEKIISIVKSLEPSFGGINLEDIGAPKCFRILQRLSEEMNIPVFHD 154
Score = 34.0 bits (78), Expect = 0.033
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 377 RAIVVTDGERILGLGDLGAYGMGIPV--GKLSLYTALAGIKPHQCLPITLD 425
VV+DG +LGLG++G YG +PV GK L+ A A I PI L
Sbjct: 59 TVAVVSDGSAVLGLGNIGPYG-ALPVMEGKAFLFKAFADID---AFPICLS 105
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB
{Escherichia coli [TaxId: 562]}
Length = 182
Score = 36.1 bits (82), Expect = 0.009
Identities = 17/94 (18%), Positives = 34/94 (36%)
Query: 223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282
D G + +++ + + T++ GAG AS I + KE + +
Sbjct: 1 DGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA 60
Query: 283 KGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVV 316
V + + VT + + A AD++
Sbjct: 61 FAQRVNENTDCVVTVTDLADQQAFAEALASADIL 94
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/95 (15%), Positives = 32/95 (33%)
Query: 1 LLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDSKGLI 60
+ +++ + + T++ GAG AS I + KE + +
Sbjct: 5 HIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQR 64
Query: 61 VKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTVKP 95
V + + VT + + A AD++
Sbjct: 65 VNENTDCVVTVTDLADQQAFAEALASADILTNGTK 99
>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 177
Score = 32.3 bits (72), Expect = 0.12
Identities = 14/98 (14%), Positives = 26/98 (26%)
Query: 223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDKIWMVDS 282
D G +L R+ D I+ GAG A+ +A + + + +
Sbjct: 1 DGIGARMALEEEIGRVKDKNIVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEI 60
Query: 283 KGLIVKDRPEGGVTGHKVHYAKKHAPVKNLADVVKTGM 320
+ K E + N +
Sbjct: 61 AEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYPN 98
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 28.3 bits (63), Expect = 0.55
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 340 VKSQDEQLHLCKLNVDRYEDPLN----KYIYLQALAVK 373
V +++L K ++ R E +N + IYLQ L K
Sbjct: 28 VGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLAK 65
>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE
{Haemophilus influenzae [TaxId: 727]}
Length = 171
Score = 29.9 bits (66), Expect = 0.91
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVM 261
D GL+ L+ + +L GAG A+ G+ +
Sbjct: 1 DGIGLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQ 39
>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio
cholerae [TaxId: 666]}
Length = 139
Score = 29.1 bits (64), Expect = 1.3
Identities = 5/36 (13%), Positives = 14/36 (38%)
Query: 537 FISIHDKGHISEVLRNWPETDIRAIVVTDGERILGL 572
S+ + + E + I + V + ++G+
Sbjct: 85 VTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGI 120
>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE
{Escherichia coli [TaxId: 562]}
Length = 170
Score = 28.8 bits (63), Expect = 1.9
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 223 DVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAM 263
D GLL+ L IL GAG AS G+ +
Sbjct: 1 DGVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLD 41
>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 28.0 bits (62), Expect = 3.6
Identities = 25/156 (16%), Positives = 41/156 (26%), Gaps = 14/156 (8%)
Query: 217 GESCVNDVAGLLASLRITKTRLSDNTILFQGAGEASLGIADLCVMAMQKEGTSEQDARDK 276
ES ++ R T ++ + G G+ G A + +E D
Sbjct: 7 RESLID------GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEID-PIN 59
Query: 277 IWMVDSKGLIVKDRPEGGVTGHKV--HYAKKHAPVKNLADVVKTGMAFSIEERQALGIHG 334
+G V E G+ + + +K + I
Sbjct: 60 ALQAAMEGYEVTTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDV 119
Query: 335 -LLPAAVKSQDEQLHLCKLNVDRYEDPLNKYIYLQA 369
L + K VDRY + I L A
Sbjct: 120 KWLNENAVEKVNI----KPQVDRYRLKNGRRIILLA 151
>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA
synthase MvaS {Staphylococcus aureus [TaxId: 1280]}
Length = 221
Score = 27.6 bits (61), Expect = 6.0
Identities = 16/100 (16%), Positives = 33/100 (33%)
Query: 627 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQFEDFANHSAFRFLDTYRNRYCVFNDDIQGT 686
+ G++ DF + G+ L D A+ + L + +N +
Sbjct: 50 AKRQGKSLADFASLCFHVPFTKMGKKALESIIDNADETTQERLRSGYEDAVDYNRYVGNI 109
Query: 687 ASVAVAGLLASLRITKTRLSDNTILFQGAGEGTASVAVAG 726
+ ++ L SL + + TI G G+ +
Sbjct: 110 YTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSA 149
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.398
Gapped
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,009,190
Number of extensions: 143384
Number of successful extensions: 399
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 56
Length of query: 848
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 755
Effective length of database: 1,130,706
Effective search space: 853683030
Effective search space used: 853683030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.4 bits)