BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14379
         (120 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TZ7|A Chain A, Aquifex Aeolicus Amylomaltase
 pdb|1TZ7|B Chain B, Aquifex Aeolicus Amylomaltase
          Length = 505

 Score = 25.8 bits (55), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 55  EEQEKQKAEWTQELARVEEEINTLKHVL 82
           EE+ K+  EW +EL R E+E   LK VL
Sbjct: 163 EEEGKEWYEWDEELKRREKE--ALKRVL 188


>pdb|4F4E|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase
           From Burkholderia Pseudomallei Covalently Bound To
           Pyridoxal Phosphate
 pdb|4F4E|B Chain B, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase
           From Burkholderia Pseudomallei Covalently Bound To
           Pyridoxal Phosphate
          Length = 420

 Score = 25.8 bits (55), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 53  SPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTA 89
           SPE     +A W QEL  + + I  +++ L  + K A
Sbjct: 323 SPE----LRASWVQELGEMRDRIRAMRNGLVERLKAA 355


>pdb|4EFF|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase
           From Burkholderia Pseudomallei
          Length = 420

 Score = 25.8 bits (55), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 53  SPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTA 89
           SPE     +A W QEL  + + I  +++ L  + K A
Sbjct: 323 SPE----LRASWVQELGEMRDRIRAMRNGLVERLKAA 355


>pdb|4GF2|A Chain A, Crystal Structure Of Plasmodium Falciparum Erythrocyte
           Binding Antigen 140 (Pfeba-140BAEBL)
          Length = 615

 Score = 25.8 bits (55), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 23  TIIRSFHVVGEEANNLDLSPDSGINDLQNLSPEEQEKQKAEWT 65
           TII+SF + G   N++D++    +NDL+      +   +  W 
Sbjct: 286 TIIKSF-LNGPAKNDVDIASQINVNDLRGFGCNYKSNNEKSWN 327


>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
           (Fadd1) From Archaeoglobus Fulgidus
 pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
           (Fadd1) From Archaeoglobus Fulgidus
          Length = 549

 Score = 25.8 bits (55), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 23  TIIRSFHVVGEEANNLDLSPDSGINDLQN--LSPEE 56
           T +    VVG E N+L    DSG  D +N  ++PEE
Sbjct: 145 TGVERVFVVGGEVNSLSEVXDSGSEDFENVKVNPEE 180


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.129    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,481,392
Number of Sequences: 62578
Number of extensions: 123756
Number of successful extensions: 350
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 23
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)