BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14379
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55326|YZG1_CAEEL Uncharacterized protein F13E6.1 OS=Caenorhabditis elegans
GN=F13E6.1 PE=3 SV=2
Length = 195
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 38/52 (73%)
Query: 67 ELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKET 118
EL + EEEI+TLK VL+++ K A +LK+KLG T + E + D+ +S+K V +T
Sbjct: 67 ELDKTEEEISTLKQVLSARQKHAAELKRKLGLTPFSELSQDINRSLKTVTDT 118
>sp|Q96J77|TPD55_HUMAN Tumor protein D55 OS=Homo sapiens GN=TPD52L3 PE=1 SV=2
Length = 140
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 47 NDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFND 106
++L++L+ EQ + K + L ++E EI TL+HVLA+K + +LK+KLG T
Sbjct: 19 SELEDLTEPEQRELKTK----LTKLEAEIVTLRHVLAAKERRCGELKRKLGLTALVGLRQ 74
Query: 107 DLTQS 111
+L++S
Sbjct: 75 NLSKS 79
>sp|Q62393|TPD52_MOUSE Tumor protein D52 OS=Mus musculus GN=Tpd52 PE=1 SV=2
Length = 224
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 70 RVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKET 118
+VEEEI TL VLA+K K +LK+KLG + +EF ++ + ++V T
Sbjct: 84 KVEEEIQTLSQVLAAKEKHLAELKRKLGISSLQEFKQNIAKGWQDVTAT 132
>sp|Q9CYZ2|TPD54_MOUSE Tumor protein D54 OS=Mus musculus GN=Tpd52l2 PE=1 SV=1
Length = 220
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 70 RVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVK 116
+VEEEI TL+ VLA+K + +LK++LG + E +L++S +V+
Sbjct: 55 KVEEEIVTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQ 101
>sp|Q6PCT3|TPD54_RAT Tumor protein D54 OS=Rattus norvegicus GN=Tpd52l2 PE=2 SV=1
Length = 220
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 70 RVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKET 118
+VEEEI TL+ VLA+K + +LK++LG + E +L++S +V+ +
Sbjct: 55 KVEEEIVTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQGS 103
>sp|O43399|TPD54_HUMAN Tumor protein D54 OS=Homo sapiens GN=TPD52L2 PE=1 SV=2
Length = 206
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 70 RVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVK 116
+VEEEI TL+ VLA+K + +LK++LG + E +L++S +V+
Sbjct: 55 KVEEEIVTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQ 101
>sp|P55327|TPD52_HUMAN Tumor protein D52 OS=Homo sapiens GN=TPD52 PE=1 SV=2
Length = 224
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 69 ARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKETQV 120
A+VEEEI TL VLA+K K ++K+KLG +E ++ + ++V T
Sbjct: 84 AKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSA 135
>sp|Q95212|TPD52_RABIT Tumor protein D52 OS=Oryctolagus cuniculus GN=TPD52 PE=2 SV=1
Length = 184
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 69 ARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKETQV 120
A+VEEEI TL VLA++ K ++K+KLG +E ++ + ++V T
Sbjct: 44 AKVEEEIQTLSQVLAAREKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSA 95
>sp|Q5RCT1|TPD54_PONAB Tumor protein D54 OS=Pongo abelii GN=TPD52L2 PE=2 SV=1
Length = 206
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 70 RVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVK 116
+VEEEI TL+ VLA+K + +LK++LG + +L++S +V+
Sbjct: 55 KVEEEIVTLRQVLAAKERHCGELKRRLGLSTLGGLKQNLSRSWHDVQ 101
>sp|Q85B60|YCF2_ADICA Protein ycf2 OS=Adiantum capillus-veneris GN=ycf2-A PE=2 SV=2
Length = 2104
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 25 IRSFHVVGEEANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVE 72
I+ F + EE N L PDS +N NL P E+E++ +E+ +E + V+
Sbjct: 1985 IKDFFLYSEE--NPKLKPDSSLNRRNNL-PLEEEERDSEYVRETSSVD 2029
>sp|Q9I8F4|TPD53_CHICK Tumor protein D53 homolog OS=Gallus gallus GN=TPD52L1 PE=2 SV=1
Length = 210
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 73 EEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKETQV 120
+EI+TL+ VLA+K K ++K+KLG ++ E + ++S +++ T
Sbjct: 48 DEISTLRQVLAAKEKHLIEIKQKLGMSLMNELKQNFSKSWHDMQTTSA 95
>sp|Q6FY25|SP110_CANGA Spindle pole body component 110 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=SPC110 PE=3 SV=1
Length = 872
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 56 EQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 97
E +++K E+ AR+ EEI+TLK + K T + K+KLG
Sbjct: 259 ELDEKKQEFESSTARLNEEIHTLKSTIDDKDATISEFKRKLG 300
>sp|O54818|TPD53_MOUSE Tumor protein D53 OS=Mus musculus GN=Tpd52l1 PE=2 SV=1
Length = 204
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%)
Query: 70 RVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKET 118
++E+EI TL+ VL++K + ++K+KLG + E + ++S +++ T
Sbjct: 45 QLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSRSWHDMQTT 93
>sp|Q16890|TPD53_HUMAN Tumor protein D53 OS=Homo sapiens GN=TPD52L1 PE=1 SV=1
Length = 204
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%)
Query: 70 RVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKET 118
++E+EI TL+ VL++K + ++K+KLG + E + ++S +++ T
Sbjct: 45 QLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTT 93
>sp|Q6P8X1|SNX6_MOUSE Sorting nexin-6 OS=Mus musculus GN=Snx6 PE=1 SV=2
Length = 406
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 51 NLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQ 110
+++ EE K K E E + ++ + V + L+K L F V+ E+N DL+
Sbjct: 116 SMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSV 175
Query: 111 SIKNVKE 117
KN KE
Sbjct: 176 RGKNKKE 182
>sp|Q5R613|SNX6_PONAB Sorting nexin-6 OS=Pongo abelii GN=SNX6 PE=2 SV=1
Length = 406
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 51 NLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQ 110
+++ EE K K E E + ++ + V + L+K L F V+ E+N DL+
Sbjct: 116 SMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSV 175
Query: 111 SIKNVKE 117
KN KE
Sbjct: 176 RGKNKKE 182
>sp|O93308|SMC1A_XENLA Structural maintenance of chromosomes protein 1A OS=Xenopus laevis
GN=smc1a PE=1 SV=1
Length = 1232
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Query: 57 QEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFT---VWKEFNDDLTQSIK 113
QEK K E ELA IN +K ++ S+ + +DLK+K+ V++EF ++ ++
Sbjct: 732 QEKSKLE--SELANFSPRINDIKRIIQSRDREMKDLKEKMNQVEDEVFEEFCREI--GVR 787
Query: 114 NVKE 117
N++E
Sbjct: 788 NIRE 791
>sp|A7H2R6|SYL_CAMJD Leucine--tRNA ligase OS=Campylobacter jejuni subsp. doylei (strain
ATCC BAA-1458 / RM4099 / 269.97) GN=leuS PE=3 SV=1
Length = 809
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 4 IHIKHPIIPKCCLEMQDVLTIIRSFHVVGEEANNLDLSPDSGINDLQNLSPEEQEKQKAE 63
++I PIIP C E+ + L ++F L+L + + D NL+ K++AE
Sbjct: 712 LNILEPIIPHVCFELSEELFKCKNF-------KKLELKEEVFVKDTLNLAVSINGKKRAE 764
Query: 64 WTQELARVEEEI 75
+ + +EEI
Sbjct: 765 FKISSSASKEEI 776
>sp|Q5HU13|SYL_CAMJR Leucine--tRNA ligase OS=Campylobacter jejuni (strain RM1221)
GN=leuS PE=3 SV=1
Length = 809
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 4 IHIKHPIIPKCCLEMQDVLTIIRSFHVVGEEANNLDLSPDSGINDLQNLSPEEQEKQKAE 63
++I PIIP C E+ + L ++F L+L + + D NL+ K++AE
Sbjct: 712 LNILEPIIPHVCFELSEELFKCKNF-------KKLELKEEVFVKDTLNLAVSINGKKRAE 764
Query: 64 WTQELARVEEEI 75
+ + +EEI
Sbjct: 765 FEISSSASKEEI 776
>sp|Q9PNK3|SYL_CAMJE Leucine--tRNA ligase OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=leuS PE=3 SV=1
Length = 809
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 4 IHIKHPIIPKCCLEMQDVLTIIRSFHVVGEEANNLDLSPDSGINDLQNLSPEEQEKQKAE 63
++I PIIP C E+ + L ++F L+L + + D NL+ K++AE
Sbjct: 712 LNILEPIIPHVCFELSEELFKCKNF-------KKLELKEEVFVKDTLNLAVSINGKKRAE 764
Query: 64 WTQELARVEEEI 75
+ + +EEI
Sbjct: 765 FEISSSASKEEI 776
>sp|A1W078|SYL_CAMJJ Leucine--tRNA ligase OS=Campylobacter jejuni subsp. jejuni serotype
O:23/36 (strain 81-176) GN=leuS PE=3 SV=1
Length = 809
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 4 IHIKHPIIPKCCLEMQDVLTIIRSFHVVGEEANNLDLSPDSGINDLQNLSPEEQEKQKAE 63
++I PIIP C E+ + L ++F L+L + + D NL+ K++AE
Sbjct: 712 LNILEPIIPHVCFELSEELFKCKNF-------KKLELKEEVFVKDTLNLAVSINGKKRAE 764
Query: 64 WTQELARVEEEI 75
+ + +EEI
Sbjct: 765 FEISSSASKEEI 776
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,104,707
Number of Sequences: 539616
Number of extensions: 1631299
Number of successful extensions: 7326
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 7205
Number of HSP's gapped (non-prelim): 229
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)