Query psy14379
Match_columns 120
No_of_seqs 93 out of 115
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 18:21:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ykh_B RNA polymerase II holoe 90.3 0.5 1.7E-05 34.1 5.2 43 52-97 85-127 (132)
2 1yke_B RNA polymerase II holoe 89.2 0.62 2.1E-05 34.5 5.1 43 52-97 85-127 (151)
3 4dyl_A Tyrosine-protein kinase 86.4 1.5 5.1E-05 35.7 6.2 36 61-96 304-339 (406)
4 1t2k_D Cyclic-AMP-dependent tr 85.5 1.1 3.6E-05 28.1 3.9 25 60-84 37-61 (61)
5 1ci6_A Transcription factor AT 84.6 1.9 6.4E-05 27.4 4.8 26 58-83 36-61 (63)
6 1use_A VAsp, vasodilator-stimu 84.5 2.8 9.7E-05 26.2 5.4 33 51-83 3-40 (45)
7 3efg_A Protein SLYX homolog; x 81.9 4 0.00014 27.2 5.7 47 51-97 6-52 (78)
8 1hjb_A Ccaat/enhancer binding 80.4 3.2 0.00011 28.4 5.0 29 56-84 47-75 (87)
9 2wt7_A Proto-oncogene protein 80.2 4.2 0.00014 25.6 5.1 25 60-84 38-62 (63)
10 2inr_A DNA topoisomerase 4 sub 79.9 1.8 6.2E-05 37.9 4.4 40 49-92 448-487 (514)
11 1jnm_A Proto-oncogene C-JUN; B 78.9 1.3 4.6E-05 27.7 2.5 25 59-83 36-60 (62)
12 2nov_A DNA topoisomerase 4 sub 78.4 2.2 7.5E-05 37.2 4.4 44 50-97 425-475 (496)
13 2l5g_B Putative uncharacterize 78.3 5.5 0.00019 24.6 5.0 30 51-80 1-30 (42)
14 3viq_A SWI5-dependent recombin 77.5 3.8 0.00013 29.5 4.8 28 61-88 9-36 (122)
15 1gu4_A CAAT/enhancer binding p 71.7 3.6 0.00012 27.6 3.2 25 59-83 50-74 (78)
16 2ve7_A Kinetochore protein HEC 70.5 9.7 0.00033 30.5 6.1 23 63-85 189-211 (315)
17 2oqq_A Transcription factor HY 70.0 11 0.00036 23.3 4.8 22 62-83 20-41 (42)
18 3t97_B Nuclear pore complex pr 69.9 7.6 0.00026 25.7 4.5 31 65-95 9-39 (65)
19 4etp_A Kinesin-like protein KA 69.0 7.1 0.00024 32.2 5.1 42 62-108 20-61 (403)
20 3ilw_A DNA gyrase subunit A; D 68.4 7.5 0.00026 33.7 5.3 42 49-94 410-451 (470)
21 1g6u_A Domain swapped dimer; d 67.4 14 0.00049 23.0 5.1 8 50-57 15-22 (48)
22 1zvu_A Topoisomerase IV subuni 65.5 8.7 0.0003 34.9 5.3 42 49-94 396-437 (716)
23 3bhp_A UPF0291 protein YNZC; N 64.2 5.4 0.00019 26.0 2.8 18 50-68 20-37 (60)
24 3a7o_A Autophagy protein 16; c 63.4 31 0.001 23.5 6.5 34 60-93 19-52 (75)
25 1g6u_A Domain swapped dimer; d 62.8 24 0.00083 22.0 5.5 24 73-96 20-43 (48)
26 1l8d_A DNA double-strand break 61.8 31 0.0011 22.7 6.4 48 50-97 55-102 (112)
27 2jvd_A UPF0291 protein YNZC; s 61.4 6.7 0.00023 25.2 2.8 19 49-68 19-37 (54)
28 2zqm_A Prefoldin beta subunit 60.8 32 0.0011 22.5 6.4 35 61-95 72-106 (117)
29 3lay_A Zinc resistance-associa 59.8 23 0.00078 26.6 6.0 36 50-89 66-101 (175)
30 2xcs_B DNA gyrase subunit B, D 59.5 9 0.00031 34.7 4.3 42 49-94 631-672 (692)
31 3tnu_A Keratin, type I cytoske 56.4 30 0.001 24.1 5.8 35 63-97 42-76 (131)
32 1fxk_A Prefoldin; archaeal pro 56.3 38 0.0013 21.9 6.4 36 61-96 67-102 (107)
33 3lpx_A GYRA, DNA gyrase, A sub 55.5 18 0.0006 31.8 5.3 45 51-95 419-475 (500)
34 2yy0_A C-MYC-binding protein; 55.3 28 0.00096 21.5 4.9 28 63-97 23-50 (53)
35 1j1d_B Troponin T, TNT; THIN f 53.4 48 0.0016 23.3 6.4 47 49-95 39-85 (106)
36 1ytz_T Troponin T; muscle, THI 52.7 44 0.0015 23.5 6.1 47 49-95 39-85 (107)
37 3qh9_A Liprin-beta-2; coiled-c 52.4 54 0.0018 22.5 6.7 34 60-93 41-74 (81)
38 2d8d_A Aroag, phospho-2-dehydr 52.4 32 0.0011 22.2 5.1 37 62-101 6-45 (90)
39 2zjr_V 50S ribosomal protein L 51.4 17 0.00058 23.3 3.5 23 47-69 4-26 (67)
40 3nmd_A CGMP dependent protein 51.0 52 0.0018 22.0 6.3 34 63-96 30-63 (72)
41 3oja_B Anopheles plasmodium-re 50.2 76 0.0026 25.7 8.0 29 67-95 538-566 (597)
42 1zbd_B Rabphilin-3A; G protein 50.0 31 0.0011 24.7 5.1 28 48-75 6-35 (134)
43 2zet_C Melanophilin; complex, 49.4 71 0.0024 23.3 7.1 29 45-73 10-40 (153)
44 3kin_B Kinesin heavy chain; mo 48.7 31 0.0011 24.0 4.8 31 63-93 86-116 (117)
45 2dgc_A Protein (GCN4); basic d 48.4 24 0.00081 22.3 3.9 19 63-81 41-59 (63)
46 2vkl_A RV0948C/MT0975; helical 48.2 39 0.0013 22.4 5.1 37 62-101 15-54 (90)
47 3r8s_Y 50S ribosomal protein L 47.9 11 0.00039 23.9 2.3 22 47-68 4-25 (63)
48 3mq7_A Bone marrow stromal ant 47.7 68 0.0023 23.5 6.7 31 65-95 70-100 (121)
49 2hep_A UPF0291 protein YNZC; S 46.8 14 0.00047 25.5 2.7 18 50-68 20-37 (85)
50 1ecm_A Endo-oxabicyclic transi 46.1 43 0.0015 22.3 5.1 36 62-100 8-46 (109)
51 3hnw_A Uncharacterized protein 46.1 56 0.0019 23.4 6.0 35 61-95 77-111 (138)
52 3rmi_A Chorismate mutase prote 45.4 38 0.0013 23.3 4.9 38 61-101 14-54 (114)
53 1ybz_A Chorismate mutase; cons 45.1 46 0.0016 22.2 5.1 37 62-101 20-59 (91)
54 1bb1_B Designed, thermostable 44.9 36 0.0012 20.1 3.9 22 63-84 6-27 (36)
55 2jo8_A Serine/threonine-protei 43.7 59 0.002 20.5 5.5 39 48-89 6-44 (51)
56 3ra3_B P2F; coiled coil domain 43.4 23 0.0008 19.9 2.8 20 61-80 9-28 (28)
57 3tnu_B Keratin, type II cytosk 43.4 79 0.0027 21.8 6.8 41 53-97 34-74 (129)
58 2wt7_B Transcription factor MA 42.9 77 0.0026 21.8 6.0 36 61-96 50-85 (90)
59 1m7s_A Catalase; beta barrel, 42.2 45 0.0015 28.8 5.8 62 50-113 420-483 (484)
60 3na7_A HP0958; flagellar bioge 42.1 67 0.0023 24.3 6.2 32 63-94 29-60 (256)
61 4dnd_A Syntaxin-10, SYN10; str 41.2 60 0.0021 23.1 5.5 71 16-100 34-104 (130)
62 3iwf_A Transcription regulator 41.1 14 0.00048 25.0 2.0 23 91-113 54-76 (107)
63 1lwu_C Fibrinogen gamma chain; 40.9 59 0.002 26.6 6.0 33 63-95 16-48 (323)
64 3nmd_A CGMP dependent protein 40.5 50 0.0017 22.0 4.6 30 63-92 23-52 (72)
65 3hnw_A Uncharacterized protein 38.6 95 0.0033 22.2 6.2 31 63-93 93-123 (138)
66 2o3f_A Putative HTH-type trans 38.5 15 0.00052 24.7 1.9 22 91-112 58-79 (111)
67 2wg5_A General control protein 38.1 29 0.00098 23.8 3.2 22 59-80 14-35 (109)
68 1zxa_A CGMP-dependent protein 37.7 50 0.0017 21.7 4.2 32 64-95 16-47 (67)
69 1r73_A TM1492, 50S ribosomal p 37.3 15 0.00052 23.5 1.6 23 48-70 5-27 (66)
70 3pbf_A Pulmonary surfactant-as 37.3 40 0.0014 22.2 3.8 24 62-85 5-28 (148)
71 2c5k_T Syntaxin TLG1, T-snare 35.8 1E+02 0.0034 20.8 7.0 45 61-110 38-93 (95)
72 3a7p_A Autophagy protein 16; c 34.9 1E+02 0.0034 23.2 6.0 36 60-95 69-104 (152)
73 2xv5_A Lamin-A/C; structural p 34.4 97 0.0033 20.2 5.7 25 61-85 7-31 (74)
74 1zme_C Proline utilization tra 34.3 33 0.0011 20.5 2.7 21 63-83 48-68 (70)
75 2ke4_A CDC42-interacting prote 34.0 1E+02 0.0035 21.1 5.5 30 47-79 6-35 (98)
76 1ic8_A Hepatocyte nuclear fact 33.8 93 0.0032 23.4 5.8 59 46-109 2-65 (194)
77 3u06_A Protein claret segregat 33.4 57 0.0019 27.1 4.9 18 91-108 44-61 (412)
78 1j1d_C Troponin I, TNI; THIN f 33.3 1.4E+02 0.0048 21.7 7.6 64 49-117 55-119 (133)
79 3e98_A GAF domain of unknown f 33.2 1.6E+02 0.0056 22.5 7.4 62 51-114 66-131 (252)
80 1l8d_A DNA double-strand break 32.7 1E+02 0.0036 20.1 5.5 18 63-80 14-31 (112)
81 1kd8_B GABH BLL, GCN4 acid bas 32.1 82 0.0028 18.7 4.6 25 60-84 9-33 (36)
82 3u5e_h 60S ribosomal protein L 32.0 20 0.00069 25.8 1.7 25 47-71 7-31 (120)
83 2lem_A Apolipoprotein A-I; lip 32.0 63 0.0021 24.1 4.5 30 86-116 108-137 (216)
84 2ve7_A Kinetochore protein HEC 31.8 41 0.0014 26.8 3.7 41 59-99 192-236 (315)
85 1j1e_C Troponin I, TNI; THIN f 31.7 1.7E+02 0.0058 22.4 6.9 45 49-93 55-99 (180)
86 2xkj_E Topoisomerase IV; type 30.9 60 0.002 29.8 4.9 32 62-93 699-730 (767)
87 3m48_A General control protein 30.4 78 0.0027 18.5 3.8 23 61-83 9-31 (33)
88 3p7i_A PHND, subunit of alkylp 30.0 70 0.0024 24.5 4.6 31 50-80 282-312 (321)
89 3n5l_A Binding protein compone 29.6 89 0.003 23.5 5.0 27 50-76 273-299 (310)
90 4dzo_A Mitotic spindle assembl 29.6 84 0.0029 22.2 4.6 27 62-88 7-33 (123)
91 1k1f_A Breakpoint cluster regi 29.4 1.3E+02 0.0045 20.2 6.4 35 55-89 29-69 (72)
92 3r2p_A Apolipoprotein A-I; amp 28.6 1.6E+02 0.0056 21.1 7.7 29 87-116 111-139 (185)
93 2zkr_v 60S ribosomal protein L 28.6 25 0.00086 25.4 1.7 25 47-71 7-31 (123)
94 2l2l_A Transcriptional repress 28.5 1.1E+02 0.0036 18.9 5.5 18 53-70 2-19 (43)
95 4egx_A Kinesin-like protein KI 28.4 1.5E+02 0.005 21.8 6.0 31 62-92 8-38 (184)
96 1go4_E MAD1 (mitotic arrest de 28.0 1.1E+02 0.0038 21.4 4.9 34 52-89 9-42 (100)
97 1uo4_A General control protein 27.8 92 0.0031 18.3 3.8 23 61-83 10-32 (34)
98 2r2v_A GCN4 leucine zipper; co 27.7 91 0.0031 18.3 3.7 24 61-84 10-33 (34)
99 1vmg_A Hypothetical protein SS 27.3 1E+02 0.0036 20.6 4.6 32 70-108 62-93 (95)
100 3okg_A Restriction endonucleas 27.1 1.8E+02 0.0062 21.8 6.3 37 54-94 174-210 (412)
101 3ku8_A GYRA14, DNA gyrase subu 27.1 21 0.00073 26.5 1.1 26 61-86 130-155 (156)
102 3q8t_A Beclin-1; autophagy, AT 26.9 1.5E+02 0.005 20.0 6.7 30 63-92 22-51 (96)
103 3hx3_A Retinaldehyde-binding p 25.7 32 0.0011 26.6 2.0 40 45-84 32-71 (316)
104 3j21_W 50S ribosomal protein L 25.7 69 0.0024 20.7 3.3 23 49-71 6-28 (72)
105 2ynq_A ESSB; membrane protein, 25.6 1E+02 0.0035 23.2 4.7 28 50-84 120-147 (161)
106 3iz5_c 60S ribosomal protein L 25.6 34 0.0012 24.8 1.9 26 46-71 8-33 (124)
107 1gmj_A ATPase inhibitor; coile 25.6 1.6E+02 0.0056 20.1 6.7 27 67-93 52-78 (84)
108 1uii_A Geminin; human, DNA rep 25.5 95 0.0033 21.3 4.1 27 68-94 41-67 (83)
109 3lay_A Zinc resistance-associa 25.3 1.2E+02 0.0042 22.6 5.1 31 69-100 116-147 (175)
110 2gtv_X CM, chorismate mutase; 25.2 93 0.0032 21.3 4.1 37 62-101 6-53 (104)
111 4gfh_A DNA topoisomerase 2; to 24.9 56 0.0019 31.0 3.7 30 49-82 1121-1150(1177)
112 1wlq_A Geminin; coiled-coil; 2 24.7 1.7E+02 0.0059 20.0 6.0 18 63-80 42-59 (83)
113 4aj5_A SKA1, spindle and kinet 24.4 1.7E+02 0.0059 20.3 5.3 52 63-116 34-85 (91)
114 1jhg_A Trp operon repressor; c 24.2 1E+02 0.0035 21.1 4.2 30 82-111 54-85 (101)
115 2no2_A HIP-I, huntingtin-inter 24.2 1.8E+02 0.0061 20.0 6.7 40 56-95 26-76 (107)
116 1t3j_A Mitofusin 1; coiled coi 24.2 1.7E+02 0.0059 20.3 5.3 21 61-81 49-69 (96)
117 3okg_A Restriction endonucleas 24.0 89 0.003 23.5 4.1 37 54-94 365-401 (412)
118 3v2d_2 50S ribosomal protein L 23.9 79 0.0027 20.5 3.3 24 48-71 12-35 (72)
119 1zxa_A CGMP-dependent protein 23.9 1.5E+02 0.005 19.4 4.6 22 62-83 28-49 (67)
120 1aq5_A Matrilin-1, CMP, cartil 23.8 1.4E+02 0.0046 18.5 4.3 27 69-95 19-45 (47)
121 3hug_A RNA polymerase sigma fa 23.8 38 0.0013 21.2 1.7 30 86-116 53-82 (92)
122 1r8e_A Multidrug-efflux transp 23.5 2.1E+02 0.0073 20.7 6.4 35 61-95 81-115 (278)
123 3s9g_A Protein hexim1; cyclin 23.3 2.1E+02 0.007 20.4 6.3 33 49-81 27-59 (104)
124 3oja_B Anopheles plasmodium-re 23.0 2.4E+02 0.0081 22.8 6.7 26 62-87 512-537 (597)
125 3q0x_A Centriole protein; cent 23.0 2E+02 0.0067 22.6 6.0 32 63-94 182-213 (228)
126 2wuj_A Septum site-determining 22.9 1.1E+02 0.0037 18.7 3.7 35 49-83 17-51 (57)
127 4etp_A Kinesin-like protein KA 22.8 1.5E+02 0.005 24.3 5.5 17 63-79 14-30 (403)
128 2jtd_A Myomesin-1, skelemin; i 22.8 23 0.00078 26.7 0.6 9 5-13 33-41 (142)
129 3jyw_X 60S ribosomal protein L 22.7 22 0.00077 24.2 0.5 24 48-71 7-30 (86)
130 1vq8_V 50S ribosomal protein L 22.5 87 0.003 20.1 3.3 25 48-79 8-32 (71)
131 3c3f_A Alpha/beta peptide with 22.1 1.3E+02 0.0044 17.7 3.7 23 61-83 10-32 (34)
132 4dzn_A Coiled-coil peptide CC- 22.0 1.2E+02 0.0043 17.4 4.5 15 64-78 7-21 (33)
133 3i00_A HIP-I, huntingtin-inter 21.8 1.2E+02 0.0042 21.4 4.3 29 50-78 6-34 (120)
134 3gpv_A Transcriptional regulat 21.8 1.6E+02 0.0056 20.4 4.9 30 62-91 98-127 (148)
135 3iv1_A Tumor susceptibility ge 21.5 1.3E+02 0.0044 20.2 4.1 23 59-81 11-33 (78)
136 2b5u_A Colicin E3; high resolu 21.3 2.5E+02 0.0085 25.1 6.9 21 63-83 325-345 (551)
137 4a17_U RPL35, 60S ribosomal pr 21.3 24 0.00082 25.6 0.4 25 47-71 8-32 (124)
138 1joc_A EEA1, early endosomal a 21.3 2.1E+02 0.0071 19.7 5.4 27 63-89 8-34 (125)
139 3iyk_A VP5; icosahedral virus; 21.2 2.3E+02 0.0079 25.2 6.6 48 49-106 85-132 (526)
140 3gp4_A Transcriptional regulat 21.1 2.1E+02 0.0073 19.8 6.0 32 62-93 84-115 (142)
141 2dfs_A Myosin-5A; myosin-V, in 20.7 3.5E+02 0.012 25.1 8.0 16 69-84 987-1002(1080)
142 1gk4_A Vimentin; intermediate 20.4 1.8E+02 0.0063 18.7 5.8 25 61-85 28-52 (84)
143 3u06_A Protein claret segregat 20.3 1.5E+02 0.0051 24.5 5.1 10 64-73 8-17 (412)
No 1
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=90.25 E-value=0.5 Score=34.09 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhC
Q psy14379 52 LSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 97 (120)
Q Consensus 52 LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKLG 97 (120)
-|+|++.+.-.+|..|+..++. .|++++..+++....++..|+
T Consensus 85 ~see~Q~~ri~~L~~E~~~~~~---el~~~v~e~e~ll~~v~~~l~ 127 (132)
T 1ykh_B 85 VSAEEQLRKIDMLQKKLVEVED---EKIEAIKKKEKLMRHVDSMIE 127 (132)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3899998888888888877765 477778888888877776543
No 2
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=89.24 E-value=0.62 Score=34.53 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhC
Q psy14379 52 LSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 97 (120)
Q Consensus 52 LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKLG 97 (120)
.|+|+|.+.-.+|..|+..++. .|++++..+++-...++..|+
T Consensus 85 ~seeeQ~~ri~~Le~E~~~~~~---el~~~v~eae~ll~~v~~~l~ 127 (151)
T 1yke_B 85 VSAEEQLRKIDMLQKKLVEVED---EKIEAIKKKEKLLRHVDSLIE 127 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3899999888888888877765 467778888888877776543
No 3
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=86.42 E-value=1.5 Score=35.68 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Q psy14379 61 KAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 96 (120)
Q Consensus 61 ~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKL 96 (120)
+.-|+.-|++++++|..+++-+.+|++....|++.+
T Consensus 304 ~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~ 339 (406)
T 4dyl_A 304 VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQEL 339 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999999999999999865
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=85.46 E-value=1.1 Score=28.06 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 60 QKAEWTQELARVEEEINTLKHVLAS 84 (120)
Q Consensus 60 ~~eELr~EL~KvEeEI~TLrQVLaA 84 (120)
+-.+|+.++..+.+|+..|++.|.|
T Consensus 37 ~n~~L~~~i~~L~~e~~~Lk~~lla 61 (61)
T 1t2k_D 37 LNGQLQSEVTLLRNEVAQLKQLLLA 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3457778888888888888877753
No 5
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=84.60 E-value=1.9 Score=27.44 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 58 EKQKAEWTQELARVEEEINTLKHVLA 83 (120)
Q Consensus 58 e~~~eELr~EL~KvEeEI~TLrQVLa 83 (120)
+.+-.+|+.+++.++.|+..|++.|.
T Consensus 36 ~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 36 EKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445777777777788887777663
No 6
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=84.50 E-value=2.8 Score=26.19 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=22.5
Q ss_pred CCCHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHH
Q psy14379 51 NLSPEEQEKQK----AEWTQELARVEEEIN-TLKHVLA 83 (120)
Q Consensus 51 ~LseEE~e~~~----eELr~EL~KvEeEI~-TLrQVLa 83 (120)
+++..+.++.+ +|.|.||.|+.+||- .+|+-|.
T Consensus 3 ~~~~~dle~~KqEIL~E~RkElqK~K~EIIeAi~~El~ 40 (45)
T 1use_A 3 SSDYSDLQRVKQELLEEVKKELQKVKEEIIEAFVQELR 40 (45)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555444 467899999988875 6776654
No 7
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=81.86 E-value=4 Score=27.18 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhC
Q psy14379 51 NLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 97 (120)
Q Consensus 51 ~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKLG 97 (120)
++.+++.+..-.+|...|+=.|+-|..|.+|++.-.+....|+++|.
T Consensus 6 ~~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 6 SPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556789999999999999999999999999999998764
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=80.35 E-value=3.2 Score=28.41 Aligned_cols=29 Identities=14% Similarity=0.385 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 56 EQEKQKAEWTQELARVEEEINTLKHVLAS 84 (120)
Q Consensus 56 E~e~~~eELr~EL~KvEeEI~TLrQVLaA 84 (120)
+.+.+-..|+.++..++.|+.+||++|..
T Consensus 47 ~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 47 ELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567888888888888888888875
No 9
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=80.17 E-value=4.2 Score=25.61 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 60 QKAEWTQELARVEEEINTLKHVLAS 84 (120)
Q Consensus 60 ~~eELr~EL~KvEeEI~TLrQVLaA 84 (120)
+..+|+.++..+.+|+..|+++|.+
T Consensus 38 ~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 38 EKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777777778888888777753
No 10
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=79.90 E-value=1.8 Score=37.86 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy14379 49 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDL 92 (120)
Q Consensus 49 ~~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~EL 92 (120)
+-.||-+|++ +|+.|+.+++.||..|+..|+...+...-+
T Consensus 448 L~rLT~~e~~----kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i 487 (514)
T 2inr_A 448 LYRLTNTDIV----ALEGEHKELEALIKQLRHILDNHDALLNVI 487 (514)
T ss_dssp GGGGSTTHHH----HHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHhhHHHH----HHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4567777765 899999999999999999999875544433
No 11
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=78.88 E-value=1.3 Score=27.74 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 59 KQKAEWTQELARVEEEINTLKHVLA 83 (120)
Q Consensus 59 ~~~eELr~EL~KvEeEI~TLrQVLa 83 (120)
.+..+|+.++..+.+|+..|++.|.
T Consensus 36 ~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 36 AQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777777664
No 12
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=78.37 E-value=2.2 Score=37.16 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHhhC
Q psy14379 50 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTA-------QDLKKKLG 97 (120)
Q Consensus 50 ~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~-------~ELKRKLG 97 (120)
-.||-+|++ +|+.|+.+++.||..|+..|+...+.. .++|+|+|
T Consensus 425 ~rLt~~e~~----kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~y~ 475 (496)
T 2nov_A 425 YRLTNTDVV----VLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFA 475 (496)
T ss_dssp GGGSSHHHH----HHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHH----HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 456666664 899999999999999999999875433 45555555
No 13
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=78.33 E-value=5.5 Score=24.57 Aligned_cols=30 Identities=33% Similarity=0.415 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 51 NLSPEEQEKQKAEWTQELARVEEEINTLKH 80 (120)
Q Consensus 51 ~LseEE~e~~~eELr~EL~KvEeEI~TLrQ 80 (120)
|||-||.-+.-...-+|++|+|+.|.-|+.
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466676666666777888888888877643
No 14
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=77.48 E-value=3.8 Score=29.47 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14379 61 KAEWTQELARVEEEINTLKHVLASKTKT 88 (120)
Q Consensus 61 ~eELr~EL~KvEeEI~TLrQVLaAKek~ 88 (120)
+.+|..++..+++++.||+|++..+.+.
T Consensus 9 ~~~L~~~i~~l~~~L~~lkqa~k~~~~~ 36 (122)
T 3viq_A 9 RLKLEKEVRNLQEQLITAETARKVEAKN 36 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4589999999999999999998766543
No 15
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=71.70 E-value=3.6 Score=27.62 Aligned_cols=25 Identities=12% Similarity=0.418 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 59 KQKAEWTQELARVEEEINTLKHVLA 83 (120)
Q Consensus 59 ~~~eELr~EL~KvEeEI~TLrQVLa 83 (120)
.+-..|+.++..++.|+.+||++|.
T Consensus 50 ~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 50 AENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666666666666666553
No 16
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=70.51 E-value=9.7 Score=30.47 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 63 EWTQELARVEEEINTLKHVLASK 85 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQVLaAK 85 (120)
.|+.+...+++||..|++...++
T Consensus 189 ~L~~~~~~L~eEi~~Le~~~e~~ 211 (315)
T 2ve7_A 189 SLEAKNRALNEQIARLEQERSTA 211 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555554444333
No 17
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=69.97 E-value=11 Score=23.33 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14379 62 AEWTQELARVEEEINTLKHVLA 83 (120)
Q Consensus 62 eELr~EL~KvEeEI~TLrQVLa 83 (120)
.||.+-++.++.|=++|||||.
T Consensus 20 aeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 20 SELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHhc
Confidence 3455555566666677888874
No 18
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=69.86 E-value=7.6 Score=25.68 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q psy14379 65 TQELARVEEEINTLKHVLASKTKTAQDLKKK 95 (120)
Q Consensus 65 r~EL~KvEeEI~TLrQVLaAKek~~~ELKRK 95 (120)
+.-|.++++||.-|++=.++=...+++.|||
T Consensus 9 ~~~Ld~i~~el~eLq~~~~~~~aki~e~krk 39 (65)
T 3t97_B 9 QTRLDIISEDISELQKNQTTTMAKIAQYKRK 39 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999998888877888888888
No 19
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=69.03 E-value=7.1 Score=32.25 Aligned_cols=42 Identities=14% Similarity=0.353 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhCcchhHHHHHHH
Q psy14379 62 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDL 108 (120)
Q Consensus 62 eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKLGiT~l~eLkqni 108 (120)
++|..++.+++.++..|.+-|...+ .++|+| .+.+.+||-||
T Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~----~~rr~l-~n~~~elkgnI 61 (403)
T 4etp_A 20 AALKEKIKDTELGMKELNEILIKEE----TVRRTL-HNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHcCCCe
Confidence 3444444444444444444433332 345555 56666666554
No 20
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=68.42 E-value=7.5 Score=33.68 Aligned_cols=42 Identities=26% Similarity=0.451 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy14379 49 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKK 94 (120)
Q Consensus 49 ~~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKR 94 (120)
+..||..|++ .++.|+.+++++|..|+..|+...+...-++.
T Consensus 410 L~rLt~le~~----kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~ 451 (470)
T 3ilw_A 410 LRRLAALERQ----RIIDDLAKIEAEIADLEDILAKPERQRGIVRD 451 (470)
T ss_dssp GGGGSHHHHH----HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHhhhHHHH----HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5667777775 88999999999999999999998765554443
No 21
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=67.45 E-value=14 Score=23.01 Aligned_cols=8 Identities=50% Similarity=0.812 Sum_probs=4.3
Q ss_pred CCCCHHHH
Q psy14379 50 QNLSPEEQ 57 (120)
Q Consensus 50 ~~LseEE~ 57 (120)
+++|+||.
T Consensus 15 egfspeel 22 (48)
T 1g6u_A 15 EGFSPEEL 22 (48)
T ss_dssp TTCSHHHH
T ss_pred cCCCHHHH
Confidence 45566554
No 22
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=65.46 E-value=8.7 Score=34.93 Aligned_cols=42 Identities=33% Similarity=0.395 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy14379 49 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKK 94 (120)
Q Consensus 49 ~~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKR 94 (120)
+-.||-.|++ +++.|+.+++++|..|...|++..+...-++.
T Consensus 396 L~rLt~le~~----kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~ 437 (716)
T 1zvu_A 396 LRHLAKLEEM----KIRGEQSELEKERDQLQGILASERKMNNLLKK 437 (716)
T ss_dssp GGGGSHHHHH----HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHhhhhHHH----HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5677777775 89999999999999999999998777654443
No 23
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=64.19 E-value=5.4 Score=26.01 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=13.1
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy14379 50 QNLSPEEQEKQKAEWTQEL 68 (120)
Q Consensus 50 ~~LseEE~e~~~eELr~EL 68 (120)
.|||+||.+ ++++||.|-
T Consensus 20 ~gLT~eEk~-EQ~~LR~eY 37 (60)
T 3bhp_A 20 GVITEEEKA-EQQKLRQEY 37 (60)
T ss_dssp TCCCHHHHH-HHHHHHHHH
T ss_pred cCCCHHHHH-HHHHHHHHH
Confidence 699999986 445677654
No 24
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=63.38 E-value=31 Score=23.51 Aligned_cols=34 Identities=38% Similarity=0.442 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy14379 60 QKAEWTQELARVEEEINTLKHVLASKTKTAQDLK 93 (120)
Q Consensus 60 ~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELK 93 (120)
.-..||+||.--|.||..|+.+++-|.|-..-|-
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLN 52 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLN 52 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhh
Confidence 5568999999999999999999999988776554
No 25
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=62.77 E-value=24 Score=21.97 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHhh
Q psy14379 73 EEINTLKHVLASKTKTAQDLKKKL 96 (120)
Q Consensus 73 eEI~TLrQVLaAKek~~~ELKRKL 96 (120)
||...|-.-|.+-|+..+.||.||
T Consensus 20 eelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666677777788765
No 26
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=61.85 E-value=31 Score=22.72 Aligned_cols=48 Identities=10% Similarity=0.233 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhC
Q psy14379 50 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 97 (120)
Q Consensus 50 ~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKLG 97 (120)
+.++++.......+...++..+..+|..|+.-+..-++....|+.++.
T Consensus 55 s~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 55 RELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666554445567777777777777777777777777777766543
No 27
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=61.44 E-value=6.7 Score=25.16 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=13.5
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy14379 49 LQNLSPEEQEKQKAEWTQEL 68 (120)
Q Consensus 49 ~~~LseEE~e~~~eELr~EL 68 (120)
..|||+||.+ +++.||.|-
T Consensus 19 ~~gLT~eEk~-EQ~~LR~eY 37 (54)
T 2jvd_A 19 AGVITEEEKA-EQQKLRQEY 37 (54)
T ss_dssp HTCCCHHHHH-HHHHHHHHH
T ss_pred ccCCCHHHHH-HHHHHHHHH
Confidence 3699999986 445777654
No 28
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=60.78 E-value=32 Score=22.53 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q psy14379 61 KAEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 95 (120)
Q Consensus 61 ~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRK 95 (120)
.+.|...+..++.+|.+|..-+...++...+|+.+
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888888888888888888875
No 29
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=59.82 E-value=23 Score=26.61 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14379 50 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTA 89 (120)
Q Consensus 50 ~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~ 89 (120)
-+||+|.+.+. +.=..+-..++..||+-+.+|....
T Consensus 66 LnLT~EQq~ql----~~I~~e~r~~~~~Lr~ql~akr~EL 101 (175)
T 3lay_A 66 SPLTTEQQATA----QKIYDDYYTQTSALRQQLISKRYEY 101 (175)
T ss_dssp --CCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999977632 2222222344444555555544433
No 30
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=59.48 E-value=9 Score=34.71 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy14379 49 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKK 94 (120)
Q Consensus 49 ~~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKR 94 (120)
+-.||-.|++ +++.|..+++.||..|...|+...+...-++.
T Consensus 631 L~rLt~le~~----kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~ 672 (692)
T 2xcs_B 631 LRRLTGLERD----KIEAEYNELLNYISELETILADEEVLLQLVRD 672 (692)
T ss_dssp GGGGSTTHHH----HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHhhhHHHH----HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4566777765 88999999999999999999998776554443
No 31
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.44 E-value=30 Score=24.14 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhC
Q psy14379 63 EWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 97 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKLG 97 (120)
++|..+..++-||+.|+..-++-+...++....+.
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~ 76 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEETKGRYC 76 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 78899999999999988877777877777766544
No 32
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=56.30 E-value=38 Score=21.91 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Q psy14379 61 KAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 96 (120)
Q Consensus 61 ~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKL 96 (120)
.+.|...+..++.+|.+|-.-+...++...+|+.+|
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888999999888888888888888764
No 33
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=55.49 E-value=18 Score=31.80 Aligned_cols=45 Identities=18% Similarity=0.277 Sum_probs=34.6
Q ss_pred CCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q psy14379 51 NLSPEEQEK------------QKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 95 (120)
Q Consensus 51 ~LseEE~e~------------~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRK 95 (120)
+||+...++ ++++++.|+.++.++|..|...|++.++...-||..
T Consensus 419 ~lse~Qa~aIl~mrL~rLt~le~~ki~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~e 475 (500)
T 3lpx_A 419 YLTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLIAELMHILATPARLMEVICEE 475 (500)
T ss_dssp --CHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 578774433 456899999999999999999999998887755554
No 34
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=55.31 E-value=28 Score=21.54 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhC
Q psy14379 63 EWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 97 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKLG 97 (120)
.|+.|+..+..++..| ..+..+|+++|.
T Consensus 23 aLk~E~~eLk~k~~~L-------~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAI-------VEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 6778877777777666 355667777765
No 35
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=53.41 E-value=48 Score=23.29 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q psy14379 49 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 95 (120)
Q Consensus 49 ~~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRK 95 (120)
+++||+++....-.||-.-+.+||+|=-.|-.-+..+.....+|+.+
T Consensus 39 id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~r 85 (106)
T 1j1d_B 39 IDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNR 85 (106)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHH
Confidence 57899998887788888889999998778877777777777777644
No 36
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=52.69 E-value=44 Score=23.48 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q psy14379 49 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 95 (120)
Q Consensus 49 ~~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRK 95 (120)
+++||+++....-.+|-.-+.+||+|=-.|-.-+..+.....+|+.+
T Consensus 39 id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~r 85 (107)
T 1ytz_T 39 IDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNR 85 (107)
T ss_dssp CSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Confidence 67899998887778888889999998778877777777777777644
No 37
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=52.41 E-value=54 Score=22.50 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy14379 60 QKAEWTQELARVEEEINTLKHVLASKTKTAQDLK 93 (120)
Q Consensus 60 ~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELK 93 (120)
+|-.....|.-+.+||..|++-|..|+....-|.
T Consensus 41 ErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 41 ERNQYEWKLKATKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 3334455566667999999999999986444333
No 38
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=52.41 E-value=32 Score=22.17 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhCcchh
Q psy14379 62 AEWTQELARVEEEINTLKHVLASKTKT---AQDLKKKLGFTVW 101 (120)
Q Consensus 62 eELr~EL~KvEeEI~TLrQVLaAKek~---~~ELKRKLGiT~l 101 (120)
++||.++..+..+|..| |+.+... .+++|+..|...+
T Consensus 6 ~~lR~~ID~iD~~l~~L---l~~R~~~~~~i~~~K~~~~~~i~ 45 (90)
T 2d8d_A 6 QALRKEVDRVNREILRL---LSERGRLVQEIGRLQTELGLPHY 45 (90)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCc
Confidence 48999999999999988 6655443 4578888887654
No 39
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=51.40 E-value=17 Score=23.31 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=14.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q psy14379 47 NDLQNLSPEEQEKQKAEWTQELA 69 (120)
Q Consensus 47 ~~~~~LseEE~e~~~eELr~EL~ 69 (120)
.++-++|.+|...+-.+|+.||.
T Consensus 4 ~elr~~s~~EL~~~l~elk~ELf 26 (67)
T 2zjr_V 4 SEMRNLQATDFAKEIDARKKELM 26 (67)
T ss_dssp TTTTTSCHHHHHHHHHTHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHH
Confidence 46789999876544444444443
No 40
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=51.03 E-value=52 Score=21.96 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Q psy14379 63 EWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 96 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKL 96 (120)
+-.+||..-++-|..|-.-|..|+....+|+.+|
T Consensus 30 ~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 30 EKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777778888889899999999998888765
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.25 E-value=76 Score=25.74 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q psy14379 67 ELARVEEEINTLKHVLASKTKTAQDLKKK 95 (120)
Q Consensus 67 EL~KvEeEI~TLrQVLaAKek~~~ELKRK 95 (120)
++.+++.|+..|++.+....++..++|+.
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 33333344444444444444444444443
No 42
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=50.04 E-value=31 Score=24.65 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=16.2
Q ss_pred CCCCCCHHHHHHHHHHH--HHHHHHHHHHH
Q psy14379 48 DLQNLSPEEQEKQKAEW--TQELARVEEEI 75 (120)
Q Consensus 48 ~~~~LseEE~e~~~eEL--r~EL~KvEeEI 75 (120)
|++.||+||++.-.+=| ..+|.+.|+|.
T Consensus 6 dls~LteeE~~~Il~Vl~Rd~~l~~~E~~r 35 (134)
T 1zbd_B 6 KQEELTDEEKEIINRVIARAEKMETMEQER 35 (134)
T ss_dssp --CCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHhhHHHHHHhHHHH
Confidence 57899999997543322 24555666543
No 43
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=49.38 E-value=71 Score=23.28 Aligned_cols=29 Identities=38% Similarity=0.291 Sum_probs=17.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHH--HHHHHHHH
Q psy14379 45 GINDLQNLSPEEQEKQKAEWT--QELARVEE 73 (120)
Q Consensus 45 ~~~~~~~LseEE~e~~~eELr--~EL~KvEe 73 (120)
...|++.||+||++.-.+=|+ .+|.+.|+
T Consensus 10 ~~~dLs~LteeEr~~Il~VL~Rd~~l~~~Ee 40 (153)
T 2zet_C 10 KRLDLSTLTDEEAEHVWAVVQRDFDLRRREE 40 (153)
T ss_dssp -CCCCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccCCHHHHHHHHHHHHhHHHHHHhHH
Confidence 335689999999975433332 34555554
No 44
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=48.74 E-value=31 Score=23.96 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy14379 63 EWTQELARVEEEINTLKHVLASKTKTAQDLK 93 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQVLaAKek~~~ELK 93 (120)
+|..++.+..+++..|+..++..+.....+|
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677777788888888887776555443
No 45
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=48.43 E-value=24 Score=22.35 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14379 63 EWTQELARVEEEINTLKHV 81 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQV 81 (120)
+|..+-+.++.||..||+-
T Consensus 41 ~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 41 ELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 46
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=48.21 E-value=39 Score=22.36 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhCcchh
Q psy14379 62 AEWTQELARVEEEINTLKHVLASKTKT---AQDLKKKLGFTVW 101 (120)
Q Consensus 62 eELr~EL~KvEeEI~TLrQVLaAKek~---~~ELKRKLGiT~l 101 (120)
++||.++..+..+|..| |+.+... .+++|+..|...+
T Consensus 15 ~~lR~~ID~iD~~Ll~L---L~~R~~~~~~Ig~~K~~~~~~i~ 54 (90)
T 2vkl_A 15 DTLREEIDRLDAEILAL---VKRRAEVSKAIGKARMASGGTRL 54 (90)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCC
Confidence 38999999999999988 6666543 4578888887654
No 47
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=47.87 E-value=11 Score=23.86 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=13.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q psy14379 47 NDLQNLSPEEQEKQKAEWTQEL 68 (120)
Q Consensus 47 ~~~~~LseEE~e~~~eELr~EL 68 (120)
.++-++|.+|...+-.+|+.||
T Consensus 4 ~elr~~s~~EL~~~l~elk~El 25 (63)
T 3r8s_Y 4 KELREKSVEELNTELLNLLREQ 25 (63)
T ss_dssp GGTTSCHHHHHHHHHHHHTHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHH
Confidence 4577888887654444444444
No 48
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=47.74 E-value=68 Score=23.49 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q psy14379 65 TQELARVEEEINTLKHVLASKTKTAQDLKKK 95 (120)
Q Consensus 65 r~EL~KvEeEI~TLrQVLaAKek~~~ELKRK 95 (120)
+..+.+++.||.+|.|-|.-.......|+|.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4457777999999999999888888888875
No 49
>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast structural genomics consortium, PSI-1, protein structure initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=46.78 E-value=14 Score=25.52 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy14379 50 QNLSPEEQEKQKAEWTQEL 68 (120)
Q Consensus 50 ~~LseEE~e~~~eELr~EL 68 (120)
.|||+||.+ ++++||.|-
T Consensus 20 ~GLT~eEk~-EQ~~LR~eY 37 (85)
T 2hep_A 20 GVITEEEKA-EQQKLRQEY 37 (85)
T ss_dssp HCCCHHHHH-HHHHHHHHH
T ss_pred cCCCHHHHH-HHHHHHHHH
Confidence 699999986 446777765
No 50
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=46.12 E-value=43 Score=22.29 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhCcch
Q psy14379 62 AEWTQELARVEEEINTLKHVLASKTKT---AQDLKKKLGFTV 100 (120)
Q Consensus 62 eELr~EL~KvEeEI~TLrQVLaAKek~---~~ELKRKLGiT~ 100 (120)
++||.++..+..+|..| |+.+... .+++|+..|...
T Consensus 8 ~~lR~~ID~iD~~L~~L---L~~R~~~~~~v~~~K~~~~~~i 46 (109)
T 1ecm_A 8 LALREKISALDEKLLAL---LAERRELAVEVGKAKLLSHRPV 46 (109)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCCC
Confidence 48999999999999988 6655443 446888878654
No 51
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=46.09 E-value=56 Score=23.45 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q psy14379 61 KAEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 95 (120)
Q Consensus 61 ~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRK 95 (120)
.++|+.++...+.||..|++=|.+......+++++
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e 111 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKE 111 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777777777888888887777776666655554
No 52
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=45.40 E-value=38 Score=23.33 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhCcchh
Q psy14379 61 KAEWTQELARVEEEINTLKHVLASKTK---TAQDLKKKLGFTVW 101 (120)
Q Consensus 61 ~eELr~EL~KvEeEI~TLrQVLaAKek---~~~ELKRKLGiT~l 101 (120)
-++||.++..+..+|..| |+.+.. ..+.+|+..|+..+
T Consensus 14 L~~lR~~ID~ID~~il~L---L~~R~~~~~~I~~~K~~~~~~i~ 54 (114)
T 3rmi_A 14 LAYLRQSIDNFDITLIHI---LAERFRCTQAIGRLKARYNLPAV 54 (114)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCc
Confidence 458999999999999988 655543 34578888887654
No 53
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=45.13 E-value=46 Score=22.19 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhCcchh
Q psy14379 62 AEWTQELARVEEEINTLKHVLASKTK---TAQDLKKKLGFTVW 101 (120)
Q Consensus 62 eELr~EL~KvEeEI~TLrQVLaAKek---~~~ELKRKLGiT~l 101 (120)
++||.++..+..+|..| |+.+.. ..+++|+..|...+
T Consensus 20 ~~lR~~ID~ID~~Ll~L---L~~R~~~~~~Ig~~K~~~~~~i~ 59 (91)
T 1ybz_A 20 KLLRKEIDKIDNQIISL---LKKRLEIAQAIGKIKKELNLPIE 59 (91)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCc
Confidence 48999999999999987 665543 34578988887654
No 54
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=44.89 E-value=36 Score=20.10 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14379 63 EWTQELARVEEEINTLKHVLAS 84 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQVLaA 84 (120)
..+.|-+-+|+||+.++.-+++
T Consensus 6 aikeeqaaieeeiqaikeeiaa 27 (36)
T 1bb1_B 6 AIKEEQAAIEEEIQAIKEEIAA 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888766655
No 55
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=43.71 E-value=59 Score=20.48 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=27.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14379 48 DLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTA 89 (120)
Q Consensus 48 ~~~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~ 89 (120)
-+..||-||..+..+-|..++ |-||..||+--.+|+.=.
T Consensus 6 fLk~ls~eEL~~rl~~Ld~~M---e~Ei~elr~RY~~KRqPI 44 (51)
T 2jo8_A 6 FLKSWTVEDLQKRLLALDPMM---EQEIEEIRQKYQSKRQPI 44 (51)
T ss_dssp GGGGSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHccHHH---HHHHHHHHHHHHHhHhhH
Confidence 356789998765555555554 889999998888886533
No 56
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=43.45 E-value=23 Score=19.94 Aligned_cols=20 Identities=40% Similarity=0.516 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14379 61 KAEWTQELARVEEEINTLKH 80 (120)
Q Consensus 61 ~eELr~EL~KvEeEI~TLrQ 80 (120)
-..|++|++-+|-||..|-|
T Consensus 9 narlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 9 NARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHHHhcC
Confidence 35788899999998887743
No 57
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=43.37 E-value=79 Score=21.83 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhC
Q psy14379 53 SPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 97 (120)
Q Consensus 53 seEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKLG 97 (120)
+.+|- .+++..+..++-||..|+..-++-|+..++....++
T Consensus 34 ~k~Ei----~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~ 74 (129)
T 3tnu_B 34 TKHEI----SEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE 74 (129)
T ss_dssp CHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45554 389999999999999998888888888877776543
No 58
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=42.91 E-value=77 Score=21.76 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Q psy14379 61 KAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 96 (120)
Q Consensus 61 ~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKL 96 (120)
+.+|..+...+-.++..|++-++.=.+....+|+|+
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666655555555555566553
No 59
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET: HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Probab=42.21 E-value=45 Score=28.78 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHHhhCcchhHHHHHHHhhcch
Q psy14379 50 QNLSPEEQEKQKAEWTQELARVEEEIN--TLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIK 113 (120)
Q Consensus 50 ~~LseEE~e~~~eELr~EL~KvEeEI~--TLrQVLaAKek~~~ELKRKLGiT~l~eLkqniskgw~ 113 (120)
..|+++||+..-..+..+|+++.++|+ .+.+.-.+-.....-+...||+.. .--.+++.+++
T Consensus 420 ~~~~~~~~~~l~~n~~~~l~~~~~~i~~~~~~~~~~~d~~~~~~v~~~~~~~~--~~~~~~~~~~~ 483 (484)
T 1m7s_A 420 RSYSAKEKTDLVQKFGESLADTLTESKNIMLSYLYKEDPNYGTRVAEVAKGDL--SKVKSLAASLK 483 (484)
T ss_dssp HHSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCHHHHHHHHHHTTCCH--HHHHHHHHTCC
T ss_pred HhCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCHHHHHHHHHHhCCCh--HHHHHHhhhhc
Confidence 468999999999999999999988887 455555555555667888888765 22345555554
No 60
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=42.11 E-value=67 Score=24.32 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy14379 63 EWTQELARVEEEINTLKHVLASKTKTAQDLKK 94 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQVLaAKek~~~ELKR 94 (120)
++..||..+++++..|+.-+.+......++++
T Consensus 29 ~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~ 60 (256)
T 3na7_A 29 EKRKDLDKALNDKEAKNKAILNLEEEKLALKL 60 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555554444
No 61
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=41.17 E-value=60 Score=23.06 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=42.5
Q ss_pred hhhhhhhhhhcccccCcccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q psy14379 16 LEMQDVLTIIRSFHVVGEEANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 95 (120)
Q Consensus 16 ~~~~~~~~~~~~~~e~gEd~~~~~~~~ds~~~~~~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRK 95 (120)
.+.|..++.++++-..=..-.. . ..+.+-+|....+.||+..|.-+|..+..|...+..=++.. .|
T Consensus 34 ~EVq~sl~~l~~l~~~w~~l~~----~------~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np----~k 99 (130)
T 4dnd_A 34 GEVQKAVNTARGLYQRWCELLQ----E------SAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANP----GK 99 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH----HH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc----c------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH----Hh
Confidence 4666667666655543221111 0 11223456666778999999999999999998888766554 24
Q ss_pred hCcch
Q psy14379 96 LGFTV 100 (120)
Q Consensus 96 LGiT~ 100 (120)
+||++
T Consensus 100 F~l~~ 104 (130)
T 4dnd_A 100 FKLPA 104 (130)
T ss_dssp HCCCH
T ss_pred cCCCH
Confidence 56554
No 62
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=41.11 E-value=14 Score=25.02 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=19.6
Q ss_pred HHHHhhCcchhHHHHHHHhhcch
Q psy14379 91 DLKKKLGFTVWKEFNDDLTQSIK 113 (120)
Q Consensus 91 ELKRKLGiT~l~eLkqniskgw~ 113 (120)
.+=||||+..+.+||..+.+...
T Consensus 54 Rf~kkLGf~gf~efk~~l~~~~~ 76 (107)
T 3iwf_A 54 RLSKKVTPGGFNELKTRLSKFLP 76 (107)
T ss_dssp HHHHHHSTTHHHHHHHHHHTTSC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHH
Confidence 56689999999999999987653
No 63
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=40.90 E-value=59 Score=26.58 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q psy14379 63 EWTQELARVEEEINTLKHVLASKTKTAQDLKKK 95 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRK 95 (120)
.+..-+...+.+|..|+..|..-+.+..+|+.+
T Consensus 16 ~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~ 48 (323)
T 1lwu_C 16 ILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQ 48 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666788888888888777777777765
No 64
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=40.48 E-value=50 Score=22.05 Aligned_cols=30 Identities=10% Similarity=0.075 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy14379 63 EWTQELARVEEEINTLKHVLASKTKTAQDL 92 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQVLaAKek~~~EL 92 (120)
+|+..|.+-.+||.-.-..+...+++..+.
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ek 52 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554444555555555443
No 65
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=38.64 E-value=95 Score=22.23 Aligned_cols=31 Identities=6% Similarity=0.111 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy14379 63 EWTQELARVEEEINTLKHVLASKTKTAQDLK 93 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQVLaAKek~~~ELK 93 (120)
.|+.||.....++..+++-+..-.+...+|.
T Consensus 93 ~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 93 DLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333333333333
No 66
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=38.52 E-value=15 Score=24.72 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=18.7
Q ss_pred HHHHhhCcchhHHHHHHHhhcc
Q psy14379 91 DLKKKLGFTVWKEFNDDLTQSI 112 (120)
Q Consensus 91 ELKRKLGiT~l~eLkqniskgw 112 (120)
.+=||||+..+.+||..+.+.+
T Consensus 58 Rf~kklG~~gf~efk~~l~~~~ 79 (111)
T 2o3f_A 58 RLCXSLGLKGFQDLXMRVAGDL 79 (111)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHH
Confidence 4558999999999999987664
No 67
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=38.10 E-value=29 Score=23.81 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14379 59 KQKAEWTQELARVEEEINTLKH 80 (120)
Q Consensus 59 ~~~eELr~EL~KvEeEI~TLrQ 80 (120)
.++.+++.++.++++||..|++
T Consensus 14 ~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 14 DKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3456788888888888887764
No 68
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=37.69 E-value=50 Score=21.69 Aligned_cols=32 Identities=34% Similarity=0.477 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q psy14379 64 WTQELARVEEEINTLKHVLASKTKTAQDLKKK 95 (120)
Q Consensus 64 Lr~EL~KvEeEI~TLrQVLaAKek~~~ELKRK 95 (120)
+...|..=++-|..|...|.-|....++|+++
T Consensus 16 ~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~ 47 (67)
T 1zxa_A 16 FAKILMLKEERIKELEKRLSEKEEEIQELKRK 47 (67)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555655566666666665544
No 69
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=37.32 E-value=15 Score=23.49 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=13.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q psy14379 48 DLQNLSPEEQEKQKAEWTQELAR 70 (120)
Q Consensus 48 ~~~~LseEE~e~~~eELr~EL~K 70 (120)
++-++|.+|...+-.+|+.||..
T Consensus 5 elr~~s~~EL~~~l~elk~ELf~ 27 (66)
T 1r73_A 5 ELRNYTDEELKNLLEEKKRQLME 27 (66)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHH
Confidence 45677887665444445544433
No 70
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=37.28 E-value=40 Score=22.20 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 62 AEWTQELARVEEEINTLKHVLASK 85 (120)
Q Consensus 62 eELr~EL~KvEeEI~TLrQVLaAK 85 (120)
++|+++|..++.+|..|+..|.-+
T Consensus 5 e~l~~~~~~l~~~l~~~~~~~~~~ 28 (148)
T 3pbf_A 5 EELQTELYEIKHQILQTMGVLSLQ 28 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999998888543
No 71
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=35.80 E-value=1e+02 Score=20.82 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhhHHHHHhhCcchhHHHHHHHhh
Q psy14379 61 KAEWTQELARVEEEINTLKHVLAS-----------KTKTAQDLKKKLGFTVWKEFNDDLTQ 110 (120)
Q Consensus 61 ~eELr~EL~KvEeEI~TLrQVLaA-----------Kek~~~ELKRKLGiT~l~eLkqnisk 110 (120)
+.|++.=|.-+++-+..|++.+.. +.+..++++++ +..||..++.
T Consensus 38 ~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~-----i~~lk~~~~~ 93 (95)
T 2c5k_T 38 EEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQ-----LDALKLRFDR 93 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHH-----HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----HHHHHHHHhc
Confidence 357888888889999999998887 55667778876 4456665543
No 72
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=34.91 E-value=1e+02 Score=23.18 Aligned_cols=36 Identities=36% Similarity=0.410 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q psy14379 60 QKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 95 (120)
Q Consensus 60 ~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRK 95 (120)
.-..|+.|++.++.+|.-|...|..|.+-...|+-.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DE 104 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAA 104 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999998887766643
No 73
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=34.39 E-value=97 Score=20.25 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 61 KAEWTQELARVEEEINTLKHVLASK 85 (120)
Q Consensus 61 ~eELr~EL~KvEeEI~TLrQVLaAK 85 (120)
++.++.-+..+|.++..+|+-++.-
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~q 31 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQ 31 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477777777788777777666544
No 74
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=34.28 E-value=33 Score=20.46 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14379 63 EWTQELARVEEEINTLKHVLA 83 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQVLa 83 (120)
.|...+..+|..+..|+..|+
T Consensus 48 ~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 48 QLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 678888888888888876553
No 75
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=34.01 E-value=1e+02 Score=21.07 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=24.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 47 NDLQNLSPEEQEKQKAEWTQELARVEEEINTLK 79 (120)
Q Consensus 47 ~~~~~LseEE~e~~~eELr~EL~KvEeEI~TLr 79 (120)
.|++.|.+|.| +..|++.|..++.+|+.-.
T Consensus 6 ~d~s~LPpeqR---kkkL~~Ki~el~~ei~ke~ 35 (98)
T 2ke4_A 6 EDFSHLPPEQQ---RKRLQQQLEERSRELQKEV 35 (98)
T ss_dssp SCSSSSCHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 56899999987 4688999988888887553
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=33.77 E-value=93 Score=23.41 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=33.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhHHHHHhhCcchhHHHHHHHh
Q psy14379 46 INDLQNLSPEEQEKQKAEWTQELARV-----EEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLT 109 (120)
Q Consensus 46 ~~~~~~LseEE~e~~~eELr~EL~Kv-----EeEI~TLrQVLaAKek~~~ELKRKLGiT~l~eLkqnis 109 (120)
+.++..|++||-. |.+.++..+ -+-...|+.+|..+.--..+|-+.+||+.-. +.+-++
T Consensus 2 ~~~~~~~~~~~~~----~~~~~ie~~~~e~p~~l~~~Ik~~l~~~gitQ~~lA~~~GiSqs~-ISr~l~ 65 (194)
T 1ic8_A 2 LKELENLSPEEAA----HQKAVVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSH-LSQHLN 65 (194)
T ss_dssp -CCCCSCCHHHHH----HHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHH-HHHHHH
T ss_pred hHHHhhcCCchhH----HHHHHHHHHHccCHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHH-HHHHHh
Confidence 3568899999765 333333222 1222355666666655556788888988633 443343
No 77
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=33.38 E-value=57 Score=27.05 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=9.5
Q ss_pred HHHHhhCcchhHHHHHHH
Q psy14379 91 DLKKKLGFTVWKEFNDDL 108 (120)
Q Consensus 91 ELKRKLGiT~l~eLkqni 108 (120)
+..||-=.+.+.+||.||
T Consensus 44 ~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 44 NMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHhCCCE
Confidence 444544455566665543
No 78
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=33.28 E-value=1.4e+02 Score=21.72 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhCcchhHHHHHHHhh-cchhhhh
Q psy14379 49 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQ-SIKNVKE 117 (120)
Q Consensus 49 ~~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKLGiT~l~eLkqnisk-gw~dVq~ 117 (120)
+++||+++....-.+|-.-+.++|+|=-.|-.-+........+|+.+ .+.|+.-+.+ .|+.|..
T Consensus 55 id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~r-----V~Dl~gKfkKP~LkkVr~ 119 (133)
T 1j1d_C 55 LAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQK-----IFDLRGKFKRPTLRRVRI 119 (133)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHC--------CCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHH-----HHHHHcccCCCccCcccc
Confidence 67999998887778888888999998777776676666777777765 3445443322 3444443
No 79
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=33.23 E-value=1.6e+02 Score=22.52 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---H-HHHhhCcchhHHHHHHHhhcchh
Q psy14379 51 NLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQ---D-LKKKLGFTVWKEFNDDLTQSIKN 114 (120)
Q Consensus 51 ~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~---E-LKRKLGiT~l~eLkqniskgw~d 114 (120)
..|--|+ |-+.||.+...+|++|..|-..-..-++-.. . ..+-|+...+.++-+.+..++++
T Consensus 66 aVSL~er--Q~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~ 131 (252)
T 3e98_A 66 AVSLVER--QVRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRH 131 (252)
T ss_dssp -CHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred cccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4555554 4668999999999999887554333322222 2 23678999999999999888863
No 80
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.69 E-value=1e+02 Score=20.09 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14379 63 EWTQELARVEEEINTLKH 80 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQ 80 (120)
+++.+|.++...+..+++
T Consensus 14 ~~~~~l~~L~~~~~~l~~ 31 (112)
T 1l8d_A 14 TIEEERNEITQRIGELKN 31 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444433333
No 81
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=32.14 E-value=82 Score=18.73 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 60 QKAEWTQELARVEEEINTLKHVLAS 84 (120)
Q Consensus 60 ~~eELr~EL~KvEeEI~TLrQVLaA 84 (120)
.-|||-.+...+|.|+..||..|..
T Consensus 9 KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 9 KVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 3468888889999999999887764
No 82
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=31.98 E-value=20 Score=25.78 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=19.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH
Q psy14379 47 NDLQNLSPEEQEKQKAEWTQELARV 71 (120)
Q Consensus 47 ~~~~~LseEE~e~~~eELr~EL~Kv 71 (120)
.++-++|.+|...+-.+|+.||..+
T Consensus 7 ~ELR~~s~eEL~~~L~eLK~ELf~L 31 (120)
T 3u5e_h 7 YELRTKSKEQLASQLVDLKKELAEL 31 (120)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4577899998877777777777655
No 83
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=31.97 E-value=63 Score=24.10 Aligned_cols=30 Identities=10% Similarity=0.216 Sum_probs=22.4
Q ss_pred HhhhHHHHHhhCcchhHHHHHHHhhcchhhh
Q psy14379 86 TKTAQDLKKKLGFTVWKEFNDDLTQSIKNVK 116 (120)
Q Consensus 86 ek~~~ELKRKLGiT~l~eLkqniskgw~dVq 116 (120)
.++..+|+++|+ +-..+|+..+++.+..++
T Consensus 108 ~~~~e~lr~~L~-Py~~el~~~~~~~~e~Lr 137 (216)
T 2lem_A 108 KEDVELYRQKAS-PQGAELQESARQKLQELQ 137 (216)
T ss_dssp HHHHHHHHHHTS-CHHHHHHHHHHCSCCSSC
T ss_pred HHhHHHHHHHHH-HHHHHHHHHHHhhHHHHH
Confidence 346778888888 666788888888776655
No 84
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=31.81 E-value=41 Score=26.78 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHhhCcc
Q psy14379 59 KQKAEWTQELARVEEEINTLKHVLASK----TKTAQDLKKKLGFT 99 (120)
Q Consensus 59 ~~~eELr~EL~KvEeEI~TLrQVLaAK----ek~~~ELKRKLGiT 99 (120)
++.++|+.|+.++|.++.+++.....+ ++-+.-..+.||+.
T Consensus 192 ~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk~~~~~~~~LGl~ 236 (315)
T 2ve7_A 192 AKNRALNEQIARLEQERSTANKANAERLKRLQKSADLYKDRLGLE 236 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHcceE
Confidence 445577778888877777777765444 22333455667743
No 85
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=31.67 E-value=1.7e+02 Score=22.38 Aligned_cols=45 Identities=18% Similarity=0.246 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy14379 49 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLK 93 (120)
Q Consensus 49 ~~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELK 93 (120)
+++||+++....-.+|-.-+.+||+|=-.|-.-+........+|+
T Consensus 55 id~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~ 99 (180)
T 1j1e_C 55 LAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLT 99 (180)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHH
Confidence 678999988777778888888888775555444444444444444
No 86
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=30.86 E-value=60 Score=29.77 Aligned_cols=32 Identities=9% Similarity=0.107 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy14379 62 AEWTQELARVEEEINTLKHVLASKTKTAQDLK 93 (120)
Q Consensus 62 eELr~EL~KvEeEI~TLrQVLaAKek~~~ELK 93 (120)
.+++.|+.+++++|..|+..|++..+...-++
T Consensus 699 ~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~ 730 (767)
T 2xkj_E 699 MEIRHEQDELSAKAAIIREQLENPESLKNLII 730 (767)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 48899999999999999999998866654443
No 87
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=30.38 E-value=78 Score=18.49 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 61 KAEWTQELARVEEEINTLKHVLA 83 (120)
Q Consensus 61 ~eELr~EL~KvEeEI~TLrQVLa 83 (120)
-++|..+-+.+|.|+..||..|.
T Consensus 9 VEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 9 VEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHHhh
Confidence 46888999999999999987764
No 88
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=30.02 E-value=70 Score=24.54 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=17.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 50 QNLSPEEQEKQKAEWTQELARVEEEINTLKH 80 (120)
Q Consensus 50 ~~LseEE~e~~~eELr~EL~KvEeEI~TLrQ 80 (120)
..|+++++.+.-+++..+|++++..+..|.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (321)
T 3p7i_A 282 KGLNEQDKLAKTTAIQAQLDDLDRLNNALSA 312 (321)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567766665555555555555554444433
No 89
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=29.58 E-value=89 Score=23.55 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 50 QNLSPEEQEKQKAEWTQELARVEEEIN 76 (120)
Q Consensus 50 ~~LseEE~e~~~eELr~EL~KvEeEI~ 76 (120)
..|+++++.+.-+++.++|+++...+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (310)
T 3n5l_A 273 ANLGAEEKAAKLKALDEELAKLEKRMA 299 (310)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554444444444444443333
No 90
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=29.56 E-value=84 Score=22.20 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14379 62 AEWTQELARVEEEINTLKHVLASKTKT 88 (120)
Q Consensus 62 eELr~EL~KvEeEI~TLrQVLaAKek~ 88 (120)
.+|+.++...|--.+-|++|-.+|-..
T Consensus 7 ~~l~~qi~~~ekr~~RLKevF~~ks~e 33 (123)
T 4dzo_A 7 AELKKQVESAELKNQRLKEVFQTKIQE 33 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999888443
No 91
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=29.37 E-value=1.3e+02 Score=20.21 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhh
Q psy14379 55 EEQEKQKAEWTQELARVEEEINTL------KHVLASKTKTA 89 (120)
Q Consensus 55 EE~e~~~eELr~EL~KvEeEI~TL------rQVLaAKek~~ 89 (120)
..-|.+-+.-+.-+..+|.|.+.= =|.|.||+|+.
T Consensus 29 gdiEqeLe~Ck~sIrrLE~evn~ErFrmIYLQTlLAkerks 69 (72)
T 1k1f_A 29 GDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLAKEKKS 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 333334556777788888887732 27777887765
No 92
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=28.58 E-value=1.6e+02 Score=21.11 Aligned_cols=29 Identities=10% Similarity=0.283 Sum_probs=20.6
Q ss_pred hhhHHHHHhhCcchhHHHHHHHhhcchhhh
Q psy14379 87 KTAQDLKKKLGFTVWKEFNDDLTQSIKNVK 116 (120)
Q Consensus 87 k~~~ELKRKLGiT~l~eLkqniskgw~dVq 116 (120)
+++.+|+.+|+ .-..+|+..+++.+..++
T Consensus 111 ~~~e~lr~~l~-Py~~el~~~~~~~~e~Lr 139 (185)
T 3r2p_A 111 EEMELYRQKVE-PLRAELQEGARQKLHELQ 139 (185)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHTTTT
T ss_pred HhHHHHHHHHH-HHHHHHHHHHHhhHHHHH
Confidence 55667888887 556778877777766554
No 93
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=28.58 E-value=25 Score=25.39 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=16.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH
Q psy14379 47 NDLQNLSPEEQEKQKAEWTQELARV 71 (120)
Q Consensus 47 ~~~~~LseEE~e~~~eELr~EL~Kv 71 (120)
.++-++|.+|...+-.+|+.||..+
T Consensus 7 ~ELR~~s~eEL~~~L~eLK~ELf~L 31 (123)
T 2zkr_v 7 RDLRGKKKEELLKQLDDLKVELSQL 31 (123)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4577899988766666666666544
No 94
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=28.54 E-value=1.1e+02 Score=18.87 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy14379 53 SPEEQEKQKAEWTQELAR 70 (120)
Q Consensus 53 seEE~e~~~eELr~EL~K 70 (120)
|++|+++.-..||.||.-
T Consensus 2 s~~ere~~i~~LreeLR~ 19 (43)
T 2l2l_A 2 SPEERERMIKQLKEELRL 19 (43)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 678888777777777743
No 95
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=28.37 E-value=1.5e+02 Score=21.81 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy14379 62 AEWTQELARVEEEINTLKHVLASKTKTAQDL 92 (120)
Q Consensus 62 eELr~EL~KvEeEI~TLrQVLaAKek~~~EL 92 (120)
+|++..|..-|..+..|.+.-..|-++..++
T Consensus 8 ee~~e~L~~~e~l~~el~~tWeeKl~~te~~ 38 (184)
T 4egx_A 8 EEAIERLKETEKIIAELNETWEEKLRRTEAI 38 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4777788888888888877777776655444
No 96
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=27.98 E-value=1.1e+02 Score=21.35 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14379 52 LSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTA 89 (120)
Q Consensus 52 LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~ 89 (120)
+|.|+.. .|+.++..++-|...||+-...-|.+.
T Consensus 9 ~~~e~~~----~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 9 FSREEAD----TLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp CHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777765 889999999999999987665554443
No 97
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=27.80 E-value=92 Score=18.31 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 61 KAEWTQELARVEEEINTLKHVLA 83 (120)
Q Consensus 61 ~eELr~EL~KvEeEI~TLrQVLa 83 (120)
-|+|-.+.+.+|.|+..||..|.
T Consensus 10 VEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 10 GEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHc
Confidence 35888888999999998887764
No 98
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=27.66 E-value=91 Score=18.32 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 61 KAEWTQELARVEEEINTLKHVLAS 84 (120)
Q Consensus 61 ~eELr~EL~KvEeEI~TLrQVLaA 84 (120)
-|||-.+..-++.|...|+..|..
T Consensus 10 vEel~~~~~~l~nEv~Rl~~lLg~ 33 (34)
T 2r2v_A 10 LEEVASKLYHNANELARVAKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcC
Confidence 458888888888888888877753
No 99
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide pyrophosphohydrolase, structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.46A {Sulfolobus solfataricus} SCOP: a.204.1.2
Probab=27.26 E-value=1e+02 Score=20.57 Aligned_cols=32 Identities=13% Similarity=0.284 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhCcchhHHHHHHH
Q psy14379 70 RVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDL 108 (120)
Q Consensus 70 KvEeEI~TLrQVLaAKek~~~ELKRKLGiT~l~eLkqni 108 (120)
++++|+..+ |. .+.-|-|.+||.+=.-|+..+
T Consensus 62 ~i~eELgDv---Lf----~lv~lA~~lgiD~e~al~~k~ 93 (95)
T 1vmg_A 62 SIQEELADV---IA----WTVSIANLEGIDIEEALKKKY 93 (95)
T ss_dssp HHHHHHHHH---HH----HHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHH---HH----HHHHHHHHHCcCHHHHHHHHh
Confidence 355665544 33 445677889998877666543
No 100
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=27.13 E-value=1.8e+02 Score=21.77 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy14379 54 PEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKK 94 (120)
Q Consensus 54 eEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKR 94 (120)
-+||. ..-.-|.++.+.|..+++..+..++....|++
T Consensus 174 l~eQ~----~I~~~l~~~~~~i~~~~~~~~~~~~~~~~l~q 210 (412)
T 3okg_A 174 LEEQR----RIVAKVEALMERVREVRRLRAEAQKDTELLMQ 210 (412)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554 56677788888888888777666655555554
No 101
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=27.09 E-value=21 Score=26.54 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 61 KAEWTQELARVEEEINTLKHVLASKT 86 (120)
Q Consensus 61 ~eELr~EL~KvEeEI~TLrQVLaAKe 86 (120)
++++..|+..+.++|..|...|+..+
T Consensus 130 ~~ki~~E~~eL~~~I~~l~~IL~s~~ 155 (156)
T 3ku8_A 130 HEKLLDEYKELLDQIAELLRILGSAD 155 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34889999999999999988876543
No 102
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=26.87 E-value=1.5e+02 Score=19.96 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy14379 63 EWTQELARVEEEINTLKHVLASKTKTAQDL 92 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQVLaAKek~~~EL 92 (120)
+|..||.++|.|=..|..-|.+.+..+..|
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 556666666555555555555544444433
No 103
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=25.67 E-value=32 Score=26.61 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=12.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 45 GINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLAS 84 (120)
Q Consensus 45 ~~~~~~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaA 84 (120)
+......||++-++..++||++.=...+..|..||+.|..
T Consensus 32 ~~~~~~~l~~~~~~~a~~eL~E~~~~~~~~l~~LR~wi~~ 71 (316)
T 3hx3_A 32 VFGPCSQLPRHTLQKAKDELNEREETREEAVRELQEMVQA 71 (316)
T ss_dssp ------------------------CHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHh
Confidence 3455678888888777777776555567788888888864
No 104
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.66 E-value=69 Score=20.73 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=13.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q psy14379 49 LQNLSPEEQEKQKAEWTQELARV 71 (120)
Q Consensus 49 ~~~LseEE~e~~~eELr~EL~Kv 71 (120)
+-++|.+|...+-.+|+.||.++
T Consensus 6 lr~~s~~EL~~~L~elk~ELf~L 28 (72)
T 3j21_W 6 IREMSIEEIDAKIRELRLQLAKE 28 (72)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHHHHH
Confidence 45677776655555555555443
No 105
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=25.60 E-value=1e+02 Score=23.24 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 50 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLAS 84 (120)
Q Consensus 50 ~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaA 84 (120)
+.||-+|++ .+|.+++.||..|.--+..
T Consensus 120 ~~Lsg~er~-------ekL~~~~~ei~e~~k~~~e 147 (161)
T 2ynq_A 120 TDLSGDEKQ-------KKLDEIDQEIKEYERERKE 147 (161)
T ss_dssp SSSCHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 589999996 6677777777777444433
No 106
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=25.58 E-value=34 Score=24.75 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=20.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy14379 46 INDLQNLSPEEQEKQKAEWTQELARV 71 (120)
Q Consensus 46 ~~~~~~LseEE~e~~~eELr~EL~Kv 71 (120)
+.++-++|.+|...+-.+|+.||..+
T Consensus 8 a~ELR~~s~eEL~~~L~eLK~ELf~L 33 (124)
T 3iz5_c 8 AGELWNKSKDDLTKQLAELKTELGQL 33 (124)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 35678899998887778888887665
No 107
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=25.57 E-value=1.6e+02 Score=20.07 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy14379 67 ELARVEEEINTLKHVLASKTKTAQDLK 93 (120)
Q Consensus 67 EL~KvEeEI~TLrQVLaAKek~~~ELK 93 (120)
||.+-.++|.-|...+..-.++..+|+
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444445444443333333333
No 108
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.48 E-value=95 Score=21.27 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy14379 68 LARVEEEINTLKHVLASKTKTAQDLKK 94 (120)
Q Consensus 68 L~KvEeEI~TLrQVLaAKek~~~ELKR 94 (120)
|..+=+|...|.+-+..++...+.||.
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~ 67 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555554444444443
No 109
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=25.33 E-value=1.2e+02 Score=22.57 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHh-hhHHHHHhhCcch
Q psy14379 69 ARVEEEINTLKHVLASKTK-TAQDLKKKLGFTV 100 (120)
Q Consensus 69 ~KvEeEI~TLrQVLaAKek-~~~ELKRKLGiT~ 100 (120)
.++-.||..||+-|....- .-.++++. ||..
T Consensus 116 ~aL~~Ei~~Lr~qL~~~R~k~~~em~Ke-Gip~ 147 (175)
T 3lay_A 116 NAVAKEMESLGQKLDEQRVKRDVAMAQA-GIPR 147 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC
Confidence 3445777888877766543 44467776 8874
No 110
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=25.19 E-value=93 Score=21.29 Aligned_cols=37 Identities=24% Similarity=0.510 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHH---hhhHHHHHhhCcchh
Q psy14379 62 AEWTQELARVEEEIN--------TLKHVLASKT---KTAQDLKKKLGFTVW 101 (120)
Q Consensus 62 eELr~EL~KvEeEI~--------TLrQVLaAKe---k~~~ELKRKLGiT~l 101 (120)
+++|.++..+..+|. .| |+.+. +..+++|...|+..+
T Consensus 6 ~~lR~~ID~ID~~il~~~~~~~~~L---l~eR~~l~~~Va~~K~~~g~pi~ 53 (104)
T 2gtv_X 6 AEIRKKIDEIDNKILKARWPWAEKL---IAERNSLAKDVAEIKNQLGIPIN 53 (104)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCCCC---HHHHHHHHHHHHHHHHHHTSCSC
T ss_pred HHHHHHHHHHHHHHHHcccccHHHH---HHHHHHHHHHHHHHHHHCCCCCc
Confidence 489999999999998 65 55443 345678998887653
No 111
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=24.90 E-value=56 Score=30.97 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 49 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVL 82 (120)
Q Consensus 49 ~~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVL 82 (120)
+..||.+|++ +|+.|+.+++.||..|+...
T Consensus 1121 L~~LT~ee~e----kL~~E~~e~~~ei~~L~~~s 1150 (1177)
T 4gfh_A 1121 IWSLTKERYQ----KLLKQKQEKETELENLLKLS 1150 (1177)
T ss_dssp GGGGSHHHHH----HHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHCCC
Confidence 4578999986 89999999999999997653
No 112
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=24.71 E-value=1.7e+02 Score=20.00 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14379 63 EWTQELARVEEEINTLKH 80 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQ 80 (120)
.|..++.+.++||.+|++
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~ 59 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRK 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666666666664
No 113
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=24.40 E-value=1.7e+02 Score=20.35 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhCcchhHHHHHHHhhcchhhh
Q psy14379 63 EWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVK 116 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKLGiT~l~eLkqniskgw~dVq 116 (120)
.++.-|.|+-.||..+-..|..=|...+.=+. -...|.||...+-+.++||+
T Consensus 34 ~lk~~L~Kig~Ei~~l~eLLn~~E~eV~~Qe~--~~~sLKEL~~s~e~d~kdv~ 85 (91)
T 4aj5_A 34 TLKTVLNKIGDEIIVINELLNKLELEIQYQEQ--TNNSLKELCESLEEDYKDIE 85 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999888876663332 23567888888888888775
No 114
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=24.23 E-value=1e+02 Score=21.14 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=20.4
Q ss_pred HHHHHhhhHHHHHhhCcch--hHHHHHHHhhc
Q psy14379 82 LASKTKTAQDLKKKLGFTV--WKEFNDDLTQS 111 (120)
Q Consensus 82 LaAKek~~~ELKRKLGiT~--l~eLkqniskg 111 (120)
|..+++-..||.++||++. .+.++.-+.+.
T Consensus 54 L~~ge~TQREIA~~lGiS~stISRi~r~L~~l 85 (101)
T 1jhg_A 54 LLRGEMSQRELKNELGAGIATITRGSNSLKAA 85 (101)
T ss_dssp HHHCCSCHHHHHHHHCCCHHHHHHHHHHHHHS
T ss_pred HHcCCcCHHHHHHHHCCChhhhhHHHHHHHHc
Confidence 4466677889999999975 45555544443
No 115
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=24.22 E-value=1.8e+02 Score=20.03 Aligned_cols=40 Identities=30% Similarity=0.459 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhhHHHHHh
Q psy14379 56 EQEKQKAEWTQELARVE-----------EEINTLKHVLASKTKTAQDLKKK 95 (120)
Q Consensus 56 E~e~~~eELr~EL~KvE-----------eEI~TLrQVLaAKek~~~ELKRK 95 (120)
|.++.+++|..++.++. +.|..|++-|++|......|++.
T Consensus 26 e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~ 76 (107)
T 2no2_A 26 DLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGS 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666654 22334666666666555555553
No 116
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=24.19 E-value=1.7e+02 Score=20.29 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14379 61 KAEWTQELARVEEEINTLKHV 81 (120)
Q Consensus 61 ~eELr~EL~KvEeEI~TLrQV 81 (120)
..+|..|++.++.||..|-.+
T Consensus 49 ~~eL~~EI~~L~~eI~~LE~i 69 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLEKM 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888877443
No 117
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=23.98 E-value=89 Score=23.49 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy14379 54 PEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKK 94 (120)
Q Consensus 54 eEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKR 94 (120)
.+||. +.-.-|.++.+.|..+.+....+.....+||+
T Consensus 365 l~eQ~----~I~~~l~~~d~~i~~l~~~~~~~~~~L~~lk~ 401 (412)
T 3okg_A 365 LEEQR----RIVAYLDQIQQQVAALKRAQAETEAELKRLEQ 401 (412)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45654 56677777788888776654444444445544
No 118
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=23.86 E-value=79 Score=20.46 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=13.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q psy14379 48 DLQNLSPEEQEKQKAEWTQELARV 71 (120)
Q Consensus 48 ~~~~LseEE~e~~~eELr~EL~Kv 71 (120)
++-++|.+|...+-.+|+.||.++
T Consensus 12 elr~~s~eEL~~~L~elk~ELf~L 35 (72)
T 3v2d_2 12 EARKLSPVELEKLVREKKRELMEL 35 (72)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHH
Confidence 345677776655555555555443
No 119
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=23.86 E-value=1.5e+02 Score=19.42 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14379 62 AEWTQELARVEEEINTLKHVLA 83 (120)
Q Consensus 62 eELr~EL~KvEeEI~TLrQVLa 83 (120)
.+|..+|..=.+||..||..|-
T Consensus 28 ~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 28 KELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555556788888886653
No 120
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=23.81 E-value=1.4e+02 Score=18.52 Aligned_cols=27 Identities=41% Similarity=0.534 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHh
Q psy14379 69 ARVEEEINTLKHVLASKTKTAQDLKKK 95 (120)
Q Consensus 69 ~KvEeEI~TLrQVLaAKek~~~ELKRK 95 (120)
.++++.|++|.|=|.+=-+|...|-.+
T Consensus 19 ~~v~~~l~~Lt~kL~~vt~rle~lEnr 45 (47)
T 1aq5_A 19 TKVEELINTLQQKLEAVAKRIEALENK 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577899999988888777777766544
No 121
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=23.79 E-value=38 Score=21.17 Aligned_cols=30 Identities=10% Similarity=0.274 Sum_probs=21.9
Q ss_pred HhhhHHHHHhhCcchhHHHHHHHhhcchhhh
Q psy14379 86 TKTAQDLKKKLGFTVWKEFNDDLTQSIKNVK 116 (120)
Q Consensus 86 ek~~~ELKRKLGiT~l~eLkqniskgw~dVq 116 (120)
..-..||-+.||||. +.++.-++++...++
T Consensus 53 g~s~~eIA~~lgis~-~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 53 GWSTAQIATDLGIAE-GTVKSRLHYAVRALR 82 (92)
T ss_dssp CCCHHHHHHHHTSCH-HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCH-HHHHHHHHHHHHHHH
Confidence 455679999999985 667777777665543
No 122
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=23.46 E-value=2.1e+02 Score=20.70 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q psy14379 61 KAEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 95 (120)
Q Consensus 61 ~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRK 95 (120)
.+-|+..+..++++|..|++.+..=+.....++..
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~ 115 (278)
T 1r8e_A 81 FAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQ 115 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678888888888888887777666655555543
No 123
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=23.33 E-value=2.1e+02 Score=20.44 Aligned_cols=33 Identities=39% Similarity=0.476 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 49 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHV 81 (120)
Q Consensus 49 ~~~LseEE~e~~~eELr~EL~KvEeEI~TLrQV 81 (120)
+.++|-.|.-++--+|...++++|+|=.-||++
T Consensus 27 L~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~ 59 (104)
T 3s9g_A 27 LQNMSKQELIKEYLELEKSLSRMEDENNRLRLE 59 (104)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999988877778899999999998888885
No 124
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.03 E-value=2.4e+02 Score=22.82 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14379 62 AEWTQELARVEEEINTLKHVLASKTK 87 (120)
Q Consensus 62 eELr~EL~KvEeEI~TLrQVLaAKek 87 (120)
..++...++.+.+.+.+++-..++.+
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEADAKQK 537 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhc
Confidence 34444555445555544444433333
No 125
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=22.95 E-value=2e+02 Score=22.56 Aligned_cols=32 Identities=16% Similarity=0.369 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy14379 63 EWTQELARVEEEINTLKHVLASKTKTAQDLKK 94 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQVLaAKek~~~ELKR 94 (120)
.|...|.++.+|+.+++.-|+.=.+.+++++.
T Consensus 182 ~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 182 DLSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777776666666566665553
No 126
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.88 E-value=1.1e+02 Score=18.73 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 49 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLA 83 (120)
Q Consensus 49 ~~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLa 83 (120)
+-|..++|-+.--.++..++..+..|+..|+.-+.
T Consensus 17 ~rGY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 17 FRGYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp TTEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888876666666666666666666654443
No 127
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.83 E-value=1.5e+02 Score=24.34 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14379 63 EWTQELARVEEEINTLK 79 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLr 79 (120)
+|+++..+++++|..+.
T Consensus 14 ~l~~~~~~l~~~~~~~~ 30 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTE 30 (403)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555553
No 128
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus}
Probab=22.75 E-value=23 Score=26.66 Aligned_cols=9 Identities=33% Similarity=0.707 Sum_probs=7.7
Q ss_pred cccCCchhh
Q psy14379 5 HIKHPIIPK 13 (120)
Q Consensus 5 ~~~~~~~~~ 13 (120)
+||||+||-
T Consensus 33 eik~P~IpL 41 (142)
T 2jtd_A 33 EHKFPTVPT 41 (142)
T ss_dssp CCCCSSCSS
T ss_pred hccCCcccc
Confidence 689999994
No 129
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=22.73 E-value=22 Score=24.23 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=14.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q psy14379 48 DLQNLSPEEQEKQKAEWTQELARV 71 (120)
Q Consensus 48 ~~~~LseEE~e~~~eELr~EL~Kv 71 (120)
++-++|.+|...+-.+|+.||.++
T Consensus 7 ELR~~S~eEL~~~L~eLK~ELf~L 30 (86)
T 3jyw_X 7 ELRTKSKEQLASQLVDLKKELAEL 30 (86)
T ss_dssp HHHTSCHHHHHHHHHHHTTTHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHH
Confidence 456788887665555555555443
No 130
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=22.49 E-value=87 Score=20.14 Aligned_cols=25 Identities=24% Similarity=0.599 Sum_probs=14.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 48 DLQNLSPEEQEKQKAEWTQELARVEEEINTLK 79 (120)
Q Consensus 48 ~~~~LseEE~e~~~eELr~EL~KvEeEI~TLr 79 (120)
++-++|.+|.. .+|..+..|...||
T Consensus 8 elr~~s~~EL~-------~~l~elk~ELf~LR 32 (71)
T 1vq8_V 8 EIRDMTPAERE-------AELDDLKTELLNAR 32 (71)
T ss_dssp HHHHSCHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHH-------HHHHHHHHHHHHHH
Confidence 45567777654 44444455545555
No 131
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=22.14 E-value=1.3e+02 Score=17.67 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 61 KAEWTQELARVEEEINTLKHVLA 83 (120)
Q Consensus 61 ~eELr~EL~KvEeEI~TLrQVLa 83 (120)
-|+|-.+...+|.|+..||..|.
T Consensus 10 VEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 10 LEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHh
Confidence 35788888888888888887764
No 132
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=22.05 E-value=1.2e+02 Score=17.44 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy14379 64 WTQELARVEEEINTL 78 (120)
Q Consensus 64 Lr~EL~KvEeEI~TL 78 (120)
|++|++-+..||..|
T Consensus 7 lkqeiaalkkeiaal 21 (33)
T 4dzn_A 7 LKQEIAALKKEIAAL 21 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 133
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=21.84 E-value=1.2e+02 Score=21.39 Aligned_cols=29 Identities=7% Similarity=0.325 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 50 QNLSPEEQEKQKAEWTQELARVEEEINTL 78 (120)
Q Consensus 50 ~~LseEE~e~~~eELr~EL~KvEeEI~TL 78 (120)
+|...++++.+-+.|+.|+..+-.|+.-|
T Consensus 6 ~~~~~d~rD~~Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 6 NGVNKDEKDHLIERLYREISGLKAQLENM 34 (120)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666677888877776666654
No 134
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=21.78 E-value=1.6e+02 Score=20.41 Aligned_cols=30 Identities=17% Similarity=0.062 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy14379 62 AEWTQELARVEEEINTLKHVLASKTKTAQD 91 (120)
Q Consensus 62 eELr~EL~KvEeEI~TLrQVLaAKek~~~E 91 (120)
+-|+..+..++++|..|.+.+..-+.....
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~ 127 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKIQQKIAK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777776665554444433
No 135
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.46 E-value=1.3e+02 Score=20.22 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 59 KQKAEWTQELARVEEEINTLKHV 81 (120)
Q Consensus 59 ~~~eELr~EL~KvEeEI~TLrQV 81 (120)
..|..++..+.+--.||+|||+.
T Consensus 11 KLRrrl~E~~~q~qaEl~sLrrT 33 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAELNALKRT 33 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 45667888888888999999775
No 136
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=21.31 E-value=2.5e+02 Score=25.11 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14379 63 EWTQELARVEEEINTLKHVLA 83 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQVLa 83 (120)
+.|.||...+.-+.+++..++
T Consensus 325 ~a~ael~~a~k~~a~~~er~~ 345 (551)
T 2b5u_A 325 RARAELNQANEDVARNQERQA 345 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444
No 137
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=21.28 E-value=24 Score=25.57 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH
Q psy14379 47 NDLQNLSPEEQEKQKAEWTQELARV 71 (120)
Q Consensus 47 ~~~~~LseEE~e~~~eELr~EL~Kv 71 (120)
.++-++|.+|...+-.+|+.||..+
T Consensus 8 ~ELR~~s~eEL~~~L~eLK~ELf~L 32 (124)
T 4a17_U 8 FKLRTQTEEQLVGELGKLQTELSQL 32 (124)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4566788888776667777776554
No 138
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.27 E-value=2.1e+02 Score=19.73 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14379 63 EWTQELARVEEEINTLKHVLASKTKTA 89 (120)
Q Consensus 63 ELr~EL~KvEeEI~TLrQVLaAKek~~ 89 (120)
.|-....+.|.|+.+||.=+....+.+
T Consensus 8 ~~~~~~~~~e~e~~~l~~~~~el~~~l 34 (125)
T 1joc_A 8 ALLERCLKGEGEIEKLQTKVLELQRKL 34 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 555666666777666665544444433
No 139
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=21.15 E-value=2.3e+02 Score=25.16 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhCcchhHHHHH
Q psy14379 49 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFND 106 (120)
Q Consensus 49 ~~~LseEE~e~~~eELr~EL~KvEeEI~TLrQVLaAKek~~~ELKRKLGiT~l~eLkq 106 (120)
+.-||+-|+ .++..|..+|+|-.-= ..+++|-..+.+|+| .-|.++++
T Consensus 85 pDPLsPgE~-----~~~~Kl~eLE~e~k~d----~~~~khn~~I~~k~g-~~l~~v~~ 132 (526)
T 3iyk_A 85 PDPLSPGER-----GIQAKLKELEDEQRNE----LVRLKYNDKIKEKFG-KELEEVYN 132 (526)
T ss_pred CCCCCHhHH-----HHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHH-HHHHHHHH
Confidence 457999998 5778888888765522 235577778888887 44444443
No 140
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=21.11 E-value=2.1e+02 Score=19.78 Aligned_cols=32 Identities=6% Similarity=0.143 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy14379 62 AEWTQELARVEEEINTLKHVLASKTKTAQDLK 93 (120)
Q Consensus 62 eELr~EL~KvEeEI~TLrQVLaAKek~~~ELK 93 (120)
+-|+..+..++++|..|.+.+..-+.....++
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766665555444444333
No 141
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=20.66 E-value=3.5e+02 Score=25.15 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14379 69 ARVEEEINTLKHVLAS 84 (120)
Q Consensus 69 ~KvEeEI~TLrQVLaA 84 (120)
..+++||..|+.-+..
T Consensus 987 ~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 142
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=20.37 E-value=1.8e+02 Score=18.75 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14379 61 KAEWTQELARVEEEINTLKHVLASK 85 (120)
Q Consensus 61 ~eELr~EL~KvEeEI~TLrQVLaAK 85 (120)
...++..+..+|.++..+|+-++.-
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777777777777766543
No 143
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.29 E-value=1.5e+02 Score=24.52 Aligned_cols=10 Identities=10% Similarity=0.361 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy14379 64 WTQELARVEE 73 (120)
Q Consensus 64 Lr~EL~KvEe 73 (120)
|+.||..+.+
T Consensus 8 l~~el~~~~~ 17 (412)
T 3u06_A 8 LSTEVVHLRQ 17 (412)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
Done!