RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14379
         (120 letters)



>d1g9ga_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F)
           {Clostridium cellulolyticum [TaxId: 1521]}
          Length = 629

 Score = 30.9 bits (70), Expect = 0.029
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 62  AEWTQELARVEEEINTLKHVLA-SKTKTAQDLKKKLGFTVWKEFNDDL 108
             +  +L       NTL +  A S  +T++   +KL   +W  ++D  
Sbjct: 489 VNYGTDLGCASSLANTLTYYAAKSGDETSRQNAQKLLDAMWNNYSDSK 536


>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
          Length = 493

 Score = 29.5 bits (66), Expect = 0.085
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 49  LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDD 107
           LQ L+  E EK       E   + ++I  L  +L S  +  + ++++L   V ++F D 
Sbjct: 434 LQKLTGLEHEKLL----DEYKELLDQIAELLRILGSADRLMEVIREELE-LVREQFGDK 487


>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase
          RumA, catalytic domain {Escherichia coli [TaxId: 562]}
          Length = 358

 Score = 25.8 bits (55), Expect = 1.5
 Identities = 5/27 (18%), Positives = 12/27 (44%)

Query: 48 DLQNLSPEEQEKQKAEWTQELARVEEE 74
            Q+ S + Q++ K+     L + +  
Sbjct: 17 QQQHASVDLQQRSKSAALARLMKHDVS 43


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 25.9 bits (56), Expect = 1.7
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 12/57 (21%)

Query: 46  INDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWK 102
           I+D++N       K K     E+ R+ +E+  ++             KKK    V K
Sbjct: 9   ISDIRNC------KSKEA---EIKRINKELANIRSKFKGDKALDGYSKKK---YVCK 53


>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
           virus 1 [TaxId: 10298]}
          Length = 1122

 Score = 25.2 bits (55), Expect = 2.6
 Identities = 6/28 (21%), Positives = 15/28 (53%)

Query: 17  EMQDVLTIIRSFHVVGEEANNLDLSPDS 44
           E  + +  I+ F +     N ++L+P++
Sbjct: 852 EDIETIAFIKKFSLDYGAINFINLAPNN 879


>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
           carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 363

 Score = 24.4 bits (53), Expect = 4.7
 Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 4/31 (12%)

Query: 48  DLQNLSPEEQEKQ----KAEWTQELARVEEE 74
           +L+ L      +     K  W +E+  +E+ 
Sbjct: 306 NLKGLGHINMMELFSISKEFWDKEVEDIEKY 336


>d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 553

 Score = 24.4 bits (51), Expect = 5.3
 Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 1/38 (2%)

Query: 39  DLSPDSG-INDLQNLSPEEQEKQKAEWTQELARVEEEI 75
           D+S D    N L   S     +      +   R  + +
Sbjct: 482 DISKDPRERNPLTPASEPRFYEILKVMQEAADRHTQTL 519


>d1by7a_ e.1.1.1 (A:) Plasminogen activator inhibitor-2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 381

 Score = 23.7 bits (50), Expect = 8.1
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 82  LASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNV 115
           + S+  T   + K L F       D +  S +++
Sbjct: 43  MGSRGSTEDQMAKVLQFNEVGAAADKIHSSFRSL 76


>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus
           thermophilus [TaxId: 274]}
          Length = 191

 Score = 23.4 bits (49), Expect = 8.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 44  SGINDLQNLSPEEQEKQKAEW 64
           +G+ D   L PE  +K  A+W
Sbjct: 171 AGLYDRPRLDPELYQKVLADW 191


>g1pya.1 d.155.1.1 (A:,B:) Histidine decarboxylase {Lactobacillus
           sp., strain 30a [TaxId: 1591]}
          Length = 310

 Score = 23.7 bits (51), Expect = 8.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 79  KHVLASKTKTAQDLKKKLGFTVW 101
           K V A + K   D+K   G+ VW
Sbjct: 155 KGVTAERPKNDADMKPGQGYGVW 177


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.129    0.364 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 435,724
Number of extensions: 18187
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 29
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)