BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14380
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/128 (75%), Positives = 109/128 (85%)
Query: 277 EPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEK 336
E V+A+VVTDGERILGLGDLG GMGIPVGKL LYTA AGI+P QCLP+ IDVGT+N
Sbjct: 133 ENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDQCLPVCIDVGTDNIA 192
Query: 337 LLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRD 396
LLKDP Y+GL QKR + YD+LIDEFMKA+ RYG+NTLIQFEDFGNHNAFRFL KYR+
Sbjct: 193 LLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYRE 252
Query: 397 KYCTFNDE 404
KYCTFND+
Sbjct: 253 KYCTFNDD 260
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 93/111 (83%)
Query: 403 DEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 462
D GT+N LLKDP Y+GL QKR + YD+LIDEFMKA+ RYG+NTLIQFEDFGNHNAF
Sbjct: 185 DVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAF 244
Query: 463 RFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
RFL KYR+KYCTFNDDIQGTA+VA+AGL+A ++V K ISE + LFLGAGE
Sbjct: 245 RFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGE 295
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 58/74 (78%), Gaps = 2/74 (2%)
Query: 56 VKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTVGLACQKFGLIFRRPRGLFIT 115
++KY GI +RNE+LF+R+L +++E LMPIVYTPTVGLAC ++G IFRRP+GLFI+
Sbjct: 60 LEKYIYIMGIQ--ERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFIS 117
Query: 116 IHDKGHCFDLLKNW 129
I D+GH ++ NW
Sbjct: 118 ISDRGHVRSIVDNW 131
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 54/63 (85%)
Query: 159 HFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGA 218
FEDFGNHNAFRFL KYR+KYCTFNDDIQGTA+VA+AGL+A ++V K ISE + LFLGA
Sbjct: 234 QFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGA 293
Query: 219 GEG 221
GE
Sbjct: 294 GEA 296
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 220 EGRCIFASGSPFPPVKM-ETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
EGRC+FASGSPF PVK+ + + + PGQGNN YIFPGVAL VI HI++ +FL AA+
Sbjct: 419 EGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAK 477
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 31/35 (88%)
Query: 9 IMDRNERLFFRLLSENVEELMPIVYTPTVGLACQK 43
I +RNE+LF+R+L +++E LMPIVYTPTVGLAC +
Sbjct: 69 IQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQ 103
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 204 bits (520), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 100/164 (60%), Positives = 117/164 (71%), Gaps = 8/164 (4%)
Query: 258 GVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAG 317
G IAT + E + ++AIVVTDGERILGLGDLG G GIPVGKL+LYTA G
Sbjct: 119 GHIATXLQSWPESV--------IKAIVVTDGERILGLGDLGCYGXGIPVGKLALYTACGG 170
Query: 318 IKPHQCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLI 377
+KPHQCLP+ +DVGT+NE LLKDPLY+GLR KR G+AYD+L+DEF +AV RYG N LI
Sbjct: 171 VKPHQCLPVXLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFXEAVTSRYGXNCLI 230
Query: 378 QFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLR 421
QFEDF N NAFR L KYR+KYCTFND+ + L LR
Sbjct: 231 QFEDFANANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALR 274
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 77/111 (69%), Positives = 89/111 (80%)
Query: 403 DEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 462
D GT+NE LLKDPLY+GLR KR G+AYD+L+DEF +AV RYG N LIQFEDF N NAF
Sbjct: 182 DVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFXEAVTSRYGXNCLIQFEDFANANAF 241
Query: 463 RFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
R L KYR+KYCTFNDDIQGTASVAVAGL+A R+T ++S+ LF GAGE
Sbjct: 242 RLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGE 292
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 71/109 (65%), Gaps = 10/109 (9%)
Query: 24 NVEELMPIVYTPTVGLACQKSEKIKNYSSCRL---VKKYSLSYGISPLDRNERLFFRLLS 80
N+ L+P + +G Q +KN+ RL + +Y L + DRNE+LF+++L+
Sbjct: 27 NIHGLLPPCF---LGQDAQVYSILKNFE--RLTSDLDRYILLXSLQ--DRNEKLFYKVLT 79
Query: 81 ENVEELMPIVYTPTVGLACQKFGLIFRRPRGLFITIHDKGHCFDLLKNW 129
++E PIVYTPTVGLACQ +GL FRRPRGLFITIHD+GH L++W
Sbjct: 80 SDIERFXPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATXLQSW 128
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 49/63 (77%)
Query: 159 HFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGA 218
FEDF N NAFR L KYR+KYCTFNDDIQGTASVAVAGL+A R+T ++S+ LF GA
Sbjct: 231 QFEDFANANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGA 290
Query: 219 GEG 221
GE
Sbjct: 291 GEA 293
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 48/59 (81%), Gaps = 1/59 (1%)
Query: 220 EGRCIFASGSPFPPVKMET-KTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
EGR IFASGSPF PV + + +T YPGQGNN+Y+FPGVALGVI+ G+ HI +D+FL AE
Sbjct: 413 EGRGIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAE 471
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 199 bits (506), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 106/128 (82%)
Query: 277 EPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEK 336
E V+A+VVTDGERILGLGDLG G GIPVGKL LYTA AGI+P +CLP+ IDVGT+N
Sbjct: 152 ENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIA 211
Query: 337 LLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRD 396
LLKDP Y GL QKR + YD+LIDEF KA+ RYG+NTLIQFEDFGNHNAFRFL KYR+
Sbjct: 212 LLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYRE 271
Query: 397 KYCTFNDE 404
KYCTFND+
Sbjct: 272 KYCTFNDD 279
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 91/111 (81%)
Query: 403 DEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 462
D GT+N LLKDP Y GL QKR + YD+LIDEF KA+ RYG+NTLIQFEDFGNHNAF
Sbjct: 204 DVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAF 263
Query: 463 RFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
RFL KYR+KYCTFNDDIQGTA+VA+AGL+A ++V K ISE + LFLGAGE
Sbjct: 264 RFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGE 314
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 57/74 (77%), Gaps = 2/74 (2%)
Query: 56 VKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTVGLACQKFGLIFRRPRGLFIT 115
++KY GI +RNE+LF+R+L +++E L PIVYTPTVGLAC ++G IFRRP+GLFI+
Sbjct: 79 LEKYIYIXGIQ--ERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFIS 136
Query: 116 IHDKGHCFDLLKNW 129
I D+GH ++ NW
Sbjct: 137 ISDRGHVRSIVDNW 150
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 54/63 (85%)
Query: 159 HFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGA 218
FEDFGNHNAFRFL KYR+KYCTFNDDIQGTA+VA+AGL+A ++V K ISE + LFLGA
Sbjct: 253 QFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGA 312
Query: 219 GEG 221
GE
Sbjct: 313 GEA 315
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 220 EGRCIFASGSPFPPVKM-ETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
EGRC+FASGSPF PVK+ + + + PGQGNN YIFPGVAL VI HI++ +FL AA+
Sbjct: 438 EGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAK 496
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 9 IMDRNERLFFRLLSENVEELMPIVYTPTVGLACQK 43
I +RNE+LF+R+L +++E L PIVYTPTVGLAC +
Sbjct: 88 IQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQ 122
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 199 bits (506), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 106/128 (82%)
Query: 277 EPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEK 336
E V+A+VVTDGERILGLGDLG G GIPVGKL LYTA AGI+P +CLP+ IDVGT+N
Sbjct: 132 ENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIA 191
Query: 337 LLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRD 396
LLKDP Y GL QKR + YD+LIDEF KA+ RYG+NTLIQFEDFGNHNAFRFL KYR+
Sbjct: 192 LLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYRE 251
Query: 397 KYCTFNDE 404
KYCTFND+
Sbjct: 252 KYCTFNDD 259
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 91/111 (81%)
Query: 403 DEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 462
D GT+N LLKDP Y GL QKR + YD+LIDEF KA+ RYG+NTLIQFEDFGNHNAF
Sbjct: 184 DVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAF 243
Query: 463 RFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
RFL KYR+KYCTFNDDIQGTA+VA+AGL+A ++V K ISE + LFLGAGE
Sbjct: 244 RFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGE 294
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 57/74 (77%), Gaps = 2/74 (2%)
Query: 56 VKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTVGLACQKFGLIFRRPRGLFIT 115
++KY GI +RNE+LF+R+L +++E L PIVYTPTVGLAC ++G IFRRP+GLFI+
Sbjct: 59 LEKYIYIXGIQ--ERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFIS 116
Query: 116 IHDKGHCFDLLKNW 129
I D+GH ++ NW
Sbjct: 117 ISDRGHVRSIVDNW 130
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 54/63 (85%)
Query: 159 HFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGA 218
FEDFGNHNAFRFL KYR+KYCTFNDDIQGTA+VA+AGL+A ++V K ISE + LFLGA
Sbjct: 233 QFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGA 292
Query: 219 GEG 221
GE
Sbjct: 293 GEA 295
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 220 EGRCIFASGSPFPPVKM-ETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
EGRC+FASGSPF PVK+ + + + PGQGNN YIFPGVAL VI HI++ +FL AA+
Sbjct: 418 EGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAK 476
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 9 IMDRNERLFFRLLSENVEELMPIVYTPTVGLACQK 43
I +RNE+LF+R+L +++E L PIVYTPTVGLAC +
Sbjct: 68 IQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQ 102
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 199 bits (506), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 106/128 (82%)
Query: 277 EPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEK 336
E V+A+VVTDGERILGLGDLG G GIPVGKL LYTA AGI+P +CLP+ IDVGT+N
Sbjct: 152 ENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIA 211
Query: 337 LLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRD 396
LLKDP Y GL QKR + YD+LIDEF KA+ RYG+NTLIQFEDFGNHNAFRFL KYR+
Sbjct: 212 LLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYRE 271
Query: 397 KYCTFNDE 404
KYCTFND+
Sbjct: 272 KYCTFNDD 279
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 91/111 (81%)
Query: 403 DEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 462
D GT+N LLKDP Y GL QKR + YD+LIDEF KA+ RYG+NTLIQFEDFGNHNAF
Sbjct: 204 DVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAF 263
Query: 463 RFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
RFL KYR+KYCTFNDDIQGTA+VA+AGL+A ++V K ISE + LFLGAGE
Sbjct: 264 RFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGE 314
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 57/74 (77%), Gaps = 2/74 (2%)
Query: 56 VKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTVGLACQKFGLIFRRPRGLFIT 115
++KY GI +RNE+LF+R+L +++E L PIVYTPTVGLAC ++G IFRRP+GLFI+
Sbjct: 79 LEKYIYIXGIQ--ERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFIS 136
Query: 116 IHDKGHCFDLLKNW 129
I D+GH ++ NW
Sbjct: 137 ISDRGHVRSIVDNW 150
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 54/63 (85%)
Query: 159 HFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGA 218
FEDFGNHNAFRFL KYR+KYCTFNDDIQGTA+VA+AGL+A ++V K ISE + LFLGA
Sbjct: 253 QFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGA 312
Query: 219 GEG 221
GE
Sbjct: 313 GEA 315
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 220 EGRCIFASGSPFPPVKM-ETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
EGRC+FASGSPF PVK+ + + + PGQGNN YIFPGVAL VI HI++ +FL AA+
Sbjct: 438 EGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAK 496
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 9 IMDRNERLFFRLLSENVEELMPIVYTPTVGLACQK 43
I +RNE+LF+R+L +++E L PIVYTPTVGLAC +
Sbjct: 88 IQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQ 122
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 199 bits (505), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 106/128 (82%)
Query: 277 EPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEK 336
E V+A+VVTDGERILGLGDLG G GIPVGKL LYTA AGI+P +CLP+ IDVGT+N
Sbjct: 130 ENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIA 189
Query: 337 LLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRD 396
LLKDP Y GL QKR + YD+LIDEF KA+ RYG+NTLIQFEDFGNHNAFRFL KYR+
Sbjct: 190 LLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYRE 249
Query: 397 KYCTFNDE 404
KYCTFND+
Sbjct: 250 KYCTFNDD 257
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 91/111 (81%)
Query: 403 DEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 462
D GT+N LLKDP Y GL QKR + YD+LIDEF KA+ RYG+NTLIQFEDFGNHNAF
Sbjct: 182 DVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAF 241
Query: 463 RFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
RFL KYR+KYCTFNDDIQGTA+VA+AGL+A ++V K ISE + LFLGAGE
Sbjct: 242 RFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGE 292
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 57/74 (77%), Gaps = 2/74 (2%)
Query: 56 VKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTVGLACQKFGLIFRRPRGLFIT 115
++KY GI +RNE+LF+R+L +++E L PIVYTPTVGLAC ++G IFRRP+GLFI+
Sbjct: 57 LEKYIYIXGIQ--ERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFIS 114
Query: 116 IHDKGHCFDLLKNW 129
I D+GH ++ NW
Sbjct: 115 ISDRGHVRSIVDNW 128
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 54/63 (85%)
Query: 159 HFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGA 218
FEDFGNHNAFRFL KYR+KYCTFNDDIQGTA+VA+AGL+A ++V K ISE + LFLGA
Sbjct: 231 QFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGA 290
Query: 219 GEG 221
GE
Sbjct: 291 GEA 293
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 220 EGRCIFASGSPFPPVKM-ETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
EGRC+FASGSPF PVK+ + + + PGQGNN YIFPGVAL VI HI++ +FL AA+
Sbjct: 416 EGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAK 474
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 9 IMDRNERLFFRLLSENVEELMPIVYTPTVGLACQK 43
I +RNE+LF+R+L +++E L PIVYTPTVGLAC +
Sbjct: 66 IQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQ 100
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 198 bits (504), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 95/164 (57%), Positives = 118/164 (71%), Gaps = 8/164 (4%)
Query: 258 GVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAG 317
G IA+ ++ ED+ ++AIVVTDGERILGLGDLG GMGIPVGKL+LYTA G
Sbjct: 142 GHIASVLNAWPEDV--------IKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGG 193
Query: 318 IKPHQCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLI 377
+ P +CLP+ +DVGT NE+LLKDPLY+GLRQ+R G YD+ +DEFM+AV +YG N LI
Sbjct: 194 MNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNCLI 253
Query: 378 QFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLR 421
QFEDF N NAFR L+KYR++YCTFND+ + L LR
Sbjct: 254 QFEDFANVNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLAALR 297
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 89/111 (80%)
Query: 403 DEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 462
D GT NE+LLKDPLY+GLRQ+R G YD+ +DEFM+AV +YG N LIQFEDF N NAF
Sbjct: 205 DVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNCLIQFEDFANVNAF 264
Query: 463 RFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
R L+KYR++YCTFNDDIQGTASVAVAGL+A R+T K+S+ LF GAGE
Sbjct: 265 RLLNKYRNQYCTFNDDIQGTASVAVAGLLAALRITKNKLSDQTILFQGAGE 315
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 124/237 (52%), Gaps = 33/237 (13%)
Query: 9 IMDRNERLFFRLLSENVEELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPL 68
+ DRNE+LF+R+L+ ++E+ MPIVYTPTVGLACQ+ + + + + S L
Sbjct: 89 LQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPRGLFITIHDRGHIASVL 148
Query: 69 DR-NERLFFRLLSENVEELMPIVYTPTVGLACQKFGLIFRRPRGLFITIHDKG-----HC 122
+ E + ++ + E ++ + L C G+ P G G C
Sbjct: 149 NAWPEDVIKAIVVTDGERILGLG-----DLGCNGMGI----PVGKLALYTACGGMNPQEC 199
Query: 123 FDLLKNWTITNE-VIRDKIKMTKVTKKIQ------------EQRLQWYG-----HFEDFG 164
++ + NE +++D + + ++++ E YG FEDF
Sbjct: 200 LPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNCLIQFEDFA 259
Query: 165 NHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGEG 221
N NAFR L+KYR++YCTFNDDIQGTASVAVAGL+A R+T K+S+ LF GAGE
Sbjct: 260 NVNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLAALRITKNKLSDQTILFQGAGEA 316
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 47/59 (79%), Gaps = 1/59 (1%)
Query: 220 EGRCIFASGSPFPPVKMET-KTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
+GR IFASGSPF PV + +T YPGQGNN+Y+FPGVALGV+A G+ IT++IFL AE
Sbjct: 436 KGRAIFASGSPFDPVTLPNGQTLYPGQGNNSYVFPGVALGVVACGLRQITDNIFLTTAE 494
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 103/128 (80%)
Query: 277 EPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEK 336
E DVRAIVVTDGERILGLGDLGA G+GIPVGKL+LY AL G++P CLP+ +DVGTNN
Sbjct: 168 EEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMD 227
Query: 337 LLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRD 396
LL DP Y+GLR KR G+ YD L+D FMKA K+YGQ TLIQFEDF N NAFR LDKY+D
Sbjct: 228 LLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQD 287
Query: 397 KYCTFNDE 404
KY FND+
Sbjct: 288 KYTMFNDD 295
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/120 (62%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Query: 395 RDKYC--TFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQ 452
+ K+C D GTNN LL DP Y+GLR KR G+ YD L+D FMKA K+YGQ TLIQ
Sbjct: 210 QPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQ 269
Query: 453 FEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512
FEDF N NAFR LDKY+DKY FNDDIQGTASV VAGL+ RVT K +S+ ++LF GAG
Sbjct: 270 FEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAG 329
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 127/240 (52%), Gaps = 41/240 (17%)
Query: 9 IMDRNERLFFRLLSENVEELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPL 68
+ DRNE+LF+R++ ++V+ELMPIVYTPTVGLACQ I K L I+
Sbjct: 102 LQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYR-------KPKGLYITIN-- 152
Query: 69 DRNERLFFRLLSE-NVEELMPIVYTPT-------------VGLACQKFGLIFR----RPR 110
D + +++LS + E++ IV T +G+ K L +P+
Sbjct: 153 DNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPK 212
Query: 111 GLFITIHDKG-HCFDLLKN---WTITNEVIRDKIK-------MTKVTKKIQEQRLQWYGH 159
+ D G + DLL + + ++ +R K M TKK ++ L
Sbjct: 213 WCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLI---Q 269
Query: 160 FEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219
FEDF N NAFR LDKY+DKY FNDDIQGTASV VAGL+ RVT K +S+ ++LF GAG
Sbjct: 270 FEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAG 329
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 221 GRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDV 280
G ++ASGSPFP ++ TY PGQGNNAYIFPGVALG I I H+ D+FL+AA+ V
Sbjct: 452 GAALYASGSPFPNFELNGHTYKPGQGNNAYIFPGVALGTILFQIRHVDNDLFLLAAK-KV 510
Query: 281 RAIVVTDGERI 291
+ V D ++
Sbjct: 511 ASCVTEDSLKV 521
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 414 DPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDK-- 471
D + + + K G+ + + EF++ + +G I ED N ++ LD R+
Sbjct: 131 DAVPICIDSKNKEGKNDPDAVIEFVQRIQHTFGA---INLEDISQPNCYKILDVLRESCD 187
Query: 472 YCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512
++DD QGTASV +AGL+ ++ K I ECR +F+GAG
Sbjct: 188 IPVWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAG 228
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 10/88 (11%)
Query: 152 QRLQW-YG--HFEDFGNHNAFRFLDKYRDK--YCTFNDDIQGTASVAVAGLMAGRRVTGK 206
QR+Q +G + ED N ++ LD R+ ++DD QGTASV +AGL+ ++ K
Sbjct: 156 QRIQHTFGAINLEDISQPNCYKILDVLRESCDIPVWHDDQQGTASVTLAGLLNALKLVKK 215
Query: 207 KISECRFLFLGAGEG-----RCIFASGS 229
I ECR +F+GAG R I +G+
Sbjct: 216 DIHECRMVFIGAGSSNTTCLRLIVTAGA 243
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 28/150 (18%)
Query: 248 NAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGAC-GMGIPV 306
NAY PGV+ I+T I + + + VV+D R+LG GD+ G+G+
Sbjct: 62 NAYYTPGVSR--ISTNIRDNNDSSLFYSLRGNFVG-VVSDSTRVLGDGDVTPPGGLGVME 118
Query: 307 GKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKA 366
GK L L GI +PI ID + N++ DP + + EF++
Sbjct: 119 GKALLMKYLGGI---DAVPICID--SKNKEGKNDP----------------DAVIEFVQR 157
Query: 367 VVKRYGQNTLIQFEDFGNHNAFRFLDKYRD 396
+ +G I ED N ++ LD R+
Sbjct: 158 IQHTFGA---INLEDISQPNCYKILDVLRE 184
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 219 GEGRCIFASGSPFPPV----KMETKTY--------YPGQGNNAYIFPGVALGVIATGIHH 266
GE +F +P P + E Y +P Q NN+ FPG+ G +
Sbjct: 318 GEKPIVFCCANPVPEIYPYEAKEAGAYIVATGRGDFPNQVNNSVGFPGILKGALIVRARK 377
Query: 267 ITEDIFLIAA 276
IT+++ + A+
Sbjct: 378 ITDNMAIAAS 387
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|B Chain B, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|C Chain C, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|D Chain D, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
Length = 439
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 436 EFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKY--CTFNDDIQGTASVAVAGLMAG 493
+ +KA+ +G I ED + F L++ R++ F+DD QGTA+V +AGL+
Sbjct: 120 DIVKAIAPTFGG---INLEDIASPKCFYILERLREELDIPVFHDDQQGTAAVVLAGLLNA 176
Query: 494 RRVTGKKISECRFLFLGAG 512
+V GKKISE GAG
Sbjct: 177 LKVVGKKISEITLALFGAG 195
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 159 HFEDFGNHNAFRFLDKYRDKY--CTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFL 216
+ ED + F L++ R++ F+DD QGTA+V +AGL+ +V GKKISE
Sbjct: 133 NLEDIASPKCFYILERLREELDIPVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALF 192
Query: 217 GAG 219
GAG
Sbjct: 193 GAG 195
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 35/125 (28%)
Query: 284 VVTDGERILGLGDLGACGMGIPV--GKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDP 341
VV+DG RILGLG++G G+PV GK L+ G+ PI I N
Sbjct: 68 VVSDGSRILGLGNIGPLA-GLPVMEGKALLFKRFGGV---DAFPIMIKEQEPN------- 116
Query: 342 LYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKY--C 399
+ ID +KA+ +G I ED + F L++ R++
Sbjct: 117 ----------------KFID-IVKAIAPTFGG---INLEDIASPKCFYILERLREELDIP 156
Query: 400 TFNDE 404
F+D+
Sbjct: 157 VFHDD 161
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
pdb|1WW8|B Chain B, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
Length = 439
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 436 EFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKY--CTFNDDIQGTASVAVAGLMAG 493
+ +KA+ +G I ED + F L++ R++ F+DD QGTA+V +AGL+
Sbjct: 120 DIVKAIAPTFGG---INLEDIASPKCFYILERLREELDIPVFHDDQQGTAAVVLAGLLNA 176
Query: 494 RRVTGKKISECRFLFLGAG 512
+V GKKISE GAG
Sbjct: 177 LKVVGKKISEITLALFGAG 195
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 159 HFEDFGNHNAFRFLDKYRDKY--CTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFL 216
+ ED + F L++ R++ F+DD QGTA+V +AGL+ +V GKKISE
Sbjct: 133 NLEDIASPKCFYILERLREELDIPVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALF 192
Query: 217 GAG 219
GAG
Sbjct: 193 GAG 195
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 35/125 (28%)
Query: 284 VVTDGERILGLGDLGACGMGIPV--GKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDP 341
VV+DG RILGLG++G G+PV GK L+ G+ PI I N
Sbjct: 68 VVSDGSRILGLGNIGPLA-GLPVXEGKALLFKRFGGV---DAFPIXIKEQEPN------- 116
Query: 342 LYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKY--C 399
+ ID +KA+ +G I ED + F L++ R++
Sbjct: 117 ----------------KFID-IVKAIAPTFGG---INLEDIASPKCFYILERLREELDIP 156
Query: 400 TFNDE 404
F+D+
Sbjct: 157 VFHDD 161
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 427 GEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKY--CTFNDDIQGTAS 484
E+ +E I +K++ +G I ED G FR L + ++ F+DD QGTA
Sbjct: 107 SESEEEKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEEMNIPVFHDDQQGTAV 163
Query: 485 VAVAGLMAGRRVTGKKISECRFLFLGAG 512
V A + ++T KKI E + + G G
Sbjct: 164 VVSAAFLNALKLTEKKIEEVKVVVNGIG 191
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 159 HFEDFGNHNAFRFLDKYRDKY--CTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFL 216
+ ED G FR L + ++ F+DD QGTA V A + ++T KKI E + +
Sbjct: 129 NLEDIGAPKCFRILQRLSEEMNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVN 188
Query: 217 GAG 219
G G
Sbjct: 189 GIG 191
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 33/116 (28%)
Query: 284 VVTDGERILGLGDLGACGMGIPV--GKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDP 341
VV+DG +LGLG++G G +PV GK L+ A A I PI +
Sbjct: 64 VVSDGSAVLGLGNIGPYG-ALPVMEGKAFLFKAFADI---DAFPICL------------- 106
Query: 342 LYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDK 397
E+ +E I +K++ +G I ED G FR L + ++
Sbjct: 107 -----------SESEEEKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEE 148
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 21/107 (19%)
Query: 223 CIFASGSPFPPVKMET------------KTYYPGQGNNAYIFPGVALGVIATGIHHITED 270
IFA +P P + E ++ +P Q NN FPG+ G + IT++
Sbjct: 279 VIFALANPVPEIDPELAREAGAFIVATGRSDHPNQVNNLLAFPGIMKGAVEKR-SKITKN 337
Query: 271 IFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAG 317
+ L A E R+ + ERI+ A M + L++YTA+ G
Sbjct: 338 MLLSAVEAIARS-CEPEPERIIP----EAFDMKV---HLNVYTAVKG 376
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 428 EAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDK--YCTFNDDIQGTASV 485
E+ +E I +K++ +G I ED G FR L + ++ F+DD QGTA V
Sbjct: 118 ESEEEKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEEXNIPVFHDDQQGTAVV 174
Query: 486 AVAGLMAGRRVTGKKISECRFLFLGAG 512
A + ++T KKI E + + G G
Sbjct: 175 VSAAFLNALKLTEKKIEEVKVVVNGIG 201
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 159 HFEDFGNHNAFRFLDKYRDK--YCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFL 216
+ ED G FR L + ++ F+DD QGTA V A + ++T KKI E + +
Sbjct: 139 NLEDIGAPKCFRILQRLSEEXNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVN 198
Query: 217 GAG 219
G G
Sbjct: 199 GIG 201
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 33/116 (28%)
Query: 284 VVTDGERILGLGDLGACGMGIPV--GKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDP 341
VV+DG +LGLG++G G +PV GK L+ A A I PI +
Sbjct: 74 VVSDGSAVLGLGNIGPYG-ALPVXEGKAFLFKAFADI---DAFPICL------------- 116
Query: 342 LYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDK 397
E+ +E I +K++ +G I ED G FR L + ++
Sbjct: 117 -----------SESEEEKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEE 158
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 284 VVTDGERILGLGDLGA-CGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNE 335
V++DG +LGLGD+G M + GK +L+ A AG+ +PI +D E
Sbjct: 70 VISDGTAVLGLGDIGPEAAMPVMEGKAALFKAFAGV---DAIPIVLDTKDTEE 119
>pdb|1GO3|E Chain E, Structure Of An Archeal Homolog Of The Eukaryotic Rna
Polymerase Ii Rpb4RPB7 COMPLEX
pdb|1GO3|M Chain M, Structure Of An Archeal Homolog Of The Eukaryotic Rna
Polymerase Ii Rpb4RPB7 COMPLEX
Length = 187
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 219 GEGRCIFASGSPFPPVKMETKTYYP-------GQGNNAYIFPG-VALGVIATGIH--HIT 268
GEG+ + GS + PV ET Y P G+ + F V LG + IH I
Sbjct: 55 GEGKVVHGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIM 114
Query: 269 EDIFLIAAEPDVRAIVVTDGERILGLGD 296
+D ++ +P AI+ + ++L +GD
Sbjct: 115 DD--YVSYDPKREAIIGKETGKVLEIGD 140
>pdb|1W27|A Chain A, Phenylalanine Ammonia-Lyase (Pal) From Petroselinum
Crispum
pdb|1W27|B Chain B, Phenylalanine Ammonia-Lyase (Pal) From Petroselinum
Crispum
Length = 714
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 339 KDPLYVGLRQKRTTGEAYDE---LIDEFMKAVVKRYGQNTLIQ 378
+DPLY G+ + TG DE ++ E+ K VVK G+ I
Sbjct: 25 EDPLYWGIAAEAMTGSHLDEVKKMVAEYRKPVVKLGGETLTIS 67
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 413 KDPLYVGLRQKRTTGEAYDE---LIDEFMKAVVKRYGQNTLIQ 452
+DPLY G+ + TG DE ++ E+ K VVK G+ I
Sbjct: 25 EDPLYWGIAAEAMTGSHLDEVKKMVAEYRKPVVKLGGETLTIS 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,215,055
Number of Sequences: 62578
Number of extensions: 745786
Number of successful extensions: 1800
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1720
Number of HSP's gapped (non-prelim): 76
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)