Query psy14380
Match_columns 513
No_of_seqs 234 out of 1874
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 18:23:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257|consensus 100.0 2.9E-90 6.4E-95 726.9 10.4 297 8-326 93-542 (582)
2 PRK13529 malate dehydrogenase; 100.0 1E-83 2.2E-88 688.6 9.7 295 8-324 79-533 (563)
3 PTZ00317 NADP-dependent malic 100.0 6.2E-82 1.4E-86 674.5 11.6 294 8-323 81-531 (559)
4 PLN03129 NADP-dependent malic 100.0 4.5E-81 9.8E-86 670.2 9.4 294 8-323 104-551 (581)
5 KOG1257|consensus 100.0 3.2E-74 6.9E-79 605.7 16.3 265 24-513 55-320 (582)
6 PRK13529 malate dehydrogenase; 100.0 1.1E-66 2.3E-71 557.8 16.7 264 24-513 41-305 (563)
7 PTZ00317 NADP-dependent malic 100.0 2.5E-66 5.5E-71 554.6 16.6 264 24-513 43-307 (559)
8 PLN03129 NADP-dependent malic 100.0 3.1E-66 6.6E-71 555.9 14.3 264 25-513 67-331 (581)
9 PF00390 malic: Malic enzyme, 100.0 4.1E-62 8.9E-67 461.5 5.4 90 283-372 70-159 (182)
10 COG0281 SfcA Malic enzyme [Ene 100.0 3.9E-47 8.4E-52 394.9 6.9 280 11-364 29-423 (432)
11 PRK12861 malic enzyme; Reviewe 100.0 3E-44 6.5E-49 397.4 6.5 252 26-322 34-402 (764)
12 PRK12862 malic enzyme; Reviewe 100.0 2.8E-42 6.2E-47 382.9 7.5 251 27-322 39-406 (763)
13 PRK07232 bifunctional malic en 100.0 5.5E-42 1.2E-46 379.4 8.6 218 26-288 30-355 (752)
14 PRK12861 malic enzyme; Reviewe 100.0 2.5E-39 5.5E-44 358.4 11.0 177 220-513 20-199 (764)
15 PRK12862 malic enzyme; Reviewe 100.0 1.5E-38 3.4E-43 353.2 10.5 177 220-513 24-203 (763)
16 PRK07232 bifunctional malic en 100.0 1.8E-37 4E-42 343.6 9.7 177 220-513 16-195 (752)
17 COG0281 SfcA Malic enzyme [Ene 100.0 9.8E-37 2.1E-41 317.4 11.4 179 220-513 30-209 (432)
18 PF03949 Malic_M: Malic enzyme 100.0 7.9E-35 1.7E-39 288.5 -1.3 128 186-319 1-252 (255)
19 cd05312 NAD_bind_1_malic_enz N 100.0 4.8E-34 1E-38 286.0 3.0 132 186-323 1-255 (279)
20 cd00762 NAD_bind_malic_enz NAD 100.0 3.5E-33 7.5E-38 276.6 5.0 128 186-319 1-252 (254)
21 cd05311 NAD_bind_2_malic_enz N 99.8 3.7E-22 8E-27 194.0 4.5 127 186-319 1-224 (226)
22 PF00390 malic: Malic enzyme, 99.7 2.9E-17 6.4E-22 156.5 3.2 146 10-176 1-182 (182)
23 cd05191 NAD_bind_amino_acid_DH 89.0 0.63 1.4E-05 38.8 4.3 33 481-513 1-33 (86)
24 cd05191 NAD_bind_amino_acid_DH 87.7 0.68 1.5E-05 38.6 3.7 32 188-219 1-32 (86)
25 PRK14982 acyl-ACP reductase; P 71.7 5.9 0.00013 42.1 4.9 43 451-512 122-164 (340)
26 PRK06718 precorrin-2 dehydroge 63.9 12 0.00025 36.5 4.8 13 207-219 7-19 (202)
27 PRK14982 acyl-ACP reductase; P 62.7 8.7 0.00019 40.8 4.1 42 159-219 123-164 (340)
28 PRK14031 glutamate dehydrogena 53.8 56 0.0012 36.2 8.4 87 426-512 135-237 (444)
29 cd01078 NAD_bind_H4MPT_DH NADP 51.4 18 0.0004 34.0 3.8 31 189-219 7-38 (194)
30 cd06565 GH20_GcnA-like Glycosy 48.9 26 0.00057 36.1 4.8 105 327-459 79-190 (301)
31 PRK05476 S-adenosyl-L-homocyst 48.4 58 0.0013 35.8 7.5 40 471-513 173-222 (425)
32 TIGR01470 cysG_Nterm siroheme 46.4 1.4E+02 0.003 29.2 9.1 27 207-233 6-45 (205)
33 PF01183 Glyco_hydro_25: Glyco 39.4 37 0.0008 31.8 3.8 45 322-379 83-127 (181)
34 cd05213 NAD_bind_Glutamyl_tRNA 38.3 35 0.00075 35.2 3.7 50 459-513 139-188 (311)
35 COG0373 HemA Glutamyl-tRNA red 35.5 31 0.00068 37.8 3.0 50 459-513 139-188 (414)
36 PRK00258 aroE shikimate 5-dehy 32.7 68 0.0015 32.4 4.7 59 431-512 73-132 (278)
37 PRK10637 cysG siroheme synthas 31.0 7.1E+02 0.015 27.3 12.5 76 207-288 9-106 (457)
38 PF13963 Transpos_assoc: Trans 30.2 75 0.0016 26.6 3.8 42 339-381 1-42 (77)
39 cd06412 GH25_CH-type CH-type ( 28.7 86 0.0019 30.2 4.5 48 323-379 88-135 (199)
40 cd06413 GH25_muramidase_1 Unch 27.1 91 0.002 29.7 4.3 46 323-379 86-131 (191)
41 PRK12749 quinate/shikimate deh 26.9 67 0.0014 33.1 3.6 59 431-512 75-133 (288)
42 PRK09585 anmK anhydro-N-acetyl 26.3 81 0.0018 34.1 4.2 72 410-513 225-297 (365)
43 PRK12749 quinate/shikimate deh 26.0 91 0.002 32.1 4.4 34 178-219 100-133 (288)
44 PRK05476 S-adenosyl-L-homocyst 25.7 1.1E+02 0.0023 33.8 5.0 52 178-232 173-247 (425)
45 cd01065 NAD_bind_Shikimate_DH 25.4 63 0.0014 28.8 2.7 25 195-219 4-28 (155)
46 PRK09414 glutamate dehydrogena 24.9 3.4E+02 0.0074 30.2 8.7 87 425-512 138-241 (445)
47 PRK00258 aroE shikimate 5-dehy 24.7 88 0.0019 31.6 3.9 35 177-219 97-132 (278)
48 COG0070 GltB Glutamate synthas 24.5 4.2E+02 0.009 28.2 8.8 35 184-218 85-129 (301)
49 cd05212 NAD_bind_m-THF_DH_Cycl 23.9 1.1E+02 0.0025 28.4 4.2 28 192-219 10-37 (140)
50 TIGR01809 Shik-DH-AROM shikima 23.7 1.3E+02 0.0028 30.8 4.9 62 430-513 72-135 (282)
51 PRK00676 hemA glutamyl-tRNA re 23.7 61 0.0013 34.6 2.7 49 459-513 136-184 (338)
52 PRK00676 hemA glutamyl-tRNA re 23.7 69 0.0015 34.2 3.1 25 206-230 170-208 (338)
53 cd06419 GH25_muramidase_2 Unch 23.7 1.1E+02 0.0023 29.8 4.1 44 323-379 91-134 (190)
54 TIGR02853 spore_dpaA dipicolin 22.2 93 0.002 32.0 3.6 35 479-513 127-161 (287)
55 TIGR00936 ahcY adenosylhomocys 21.3 2.6E+02 0.0056 30.7 6.8 80 422-512 87-204 (406)
56 PF01229 Glyco_hydro_39: Glyco 21.0 1.4E+02 0.0031 32.8 4.9 74 348-451 126-199 (486)
57 cd00401 AdoHcyase S-adenosyl-L 20.7 1.5E+02 0.0034 32.4 5.1 33 184-219 179-211 (413)
58 PF12227 DUF3603: Protein of u 20.6 54 0.0012 33.1 1.4 29 281-312 50-78 (214)
59 TIGR01809 Shik-DH-AROM shikima 20.6 1.1E+02 0.0024 31.3 3.7 34 178-219 99-134 (282)
No 1
>KOG1257|consensus
Probab=100.00 E-value=2.9e-90 Score=726.86 Aligned_cols=297 Identities=47% Similarity=0.726 Sum_probs=260.2
Q ss_pred hhhccchhhHHHHHhhCcccccceeeccchhhhhhhhhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhcccc-c
Q psy14380 8 LIMDRNERLFFRLLSENVEELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEE-L 86 (513)
Q Consensus 8 ~L~drNe~LFYrLL~~hleEllPIVYTPTVGeACQ~ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~-i 86 (513)
.||+|||+||||+|++|++|+||||||||||+|||+||++||+++ ++||+++|+| ++.++++|||++ +
T Consensus 93 ~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~---------Glfisi~D~G--hi~~~l~nWp~~~V 161 (582)
T KOG1257|consen 93 DLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQ---------GLFISIKDKG--HIKQVLKNWPERNV 161 (582)
T ss_pred HHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCc---------eeEEEecccc--hHHHHHHhCCccce
Confidence 489999999999999999999999999999999999999998764 5789999996 588999999977 5
Q ss_pred cCEEEcCch---h---hhhhhccccc------cCCCeeEEeecCCcchHHHhhccCCCcc-ccccccchhh---------
Q psy14380 87 MPIVYTPTV---G---LACQKFGLIF------RRPRGLFITIHDKGHCFDLLKNWTITNE-VIRDKIKMTK--------- 144 (513)
Q Consensus 87 ~~IVVTDG~---G---ig~~g~gi~~------~p~~gL~I~I~d~g~~~~vl~d~ttnne-~L~dplY~g~--------- 144 (513)
.+||||||+ | +|++||||++ +...| | +|+.|+||++|+||||| +|+||+|+|.
T Consensus 162 ~~IvVTDGerILGLGDlG~~GmgIpvgKL~Lyta~~G----I-~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~e 236 (582)
T KOG1257|consen 162 KAIVVTDGERILGLGDLGVNGMGIPVGKLALYTALGG----I-RPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKE 236 (582)
T ss_pred eEEEEeCCCceecccccccCcccceecHHHHHHHhcC----C-ChhhceeEEEeccCChHHHhcCccccccccccccccH
Confidence 599999985 3 5666777653 22333 2 46666666666666666 5577999993
Q ss_pred ---hHHHHHHHHHhhcc-----ccccCCccchHHHHHHhcccCcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEe
Q psy14380 145 ---VTKKIQEQRLQWYG-----HFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFL 216 (513)
Q Consensus 145 ---~~~~v~~a~~~~~~-----qFEDF~~~NAfrlLerYR~~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~ 216 (513)
+.+||+.++.+.|+ |||||+++||||+|+|||++||||||||||||||+|||+|+|+|++|++|+|++|||+
T Consensus 237 Yd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~ 316 (582)
T KOG1257|consen 237 YDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFL 316 (582)
T ss_pred HHHHHHHHHHHHHHHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEe
Confidence 34667777666553 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-----------------------------------------------------------------------------
Q psy14380 217 GAG----------------------------------------------------------------------------- 219 (513)
Q Consensus 217 GAG----------------------------------------------------------------------------- 219 (513)
|||
T Consensus 317 GAG~A~~GIA~l~v~~m~~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~ 396 (582)
T KOG1257|consen 317 GAGEAALGIANLIVMAMVKEGLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGA 396 (582)
T ss_pred cCchHHhhHHHHHHHHHHHcCCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEec
Confidence 999
Q ss_pred ---------------------------------------------CceEEEeeCCCCCCcccCCeeeccCCCcceeeccc
Q psy14380 220 ---------------------------------------------EGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPG 254 (513)
Q Consensus 220 ---------------------------------------------~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPG 254 (513)
+||||||||||||||+++||+|+||||||+|+|||
T Consensus 397 S~~~g~Fteevl~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPG 476 (582)
T KOG1257|consen 397 SGVGGAFTEEVLRAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPG 476 (582)
T ss_pred ccCCccCCHHHHHHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecch
Confidence 79999999999999999999999999999999999
Q ss_pred cchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCCcCcccchheeehhccCCCCCceece
Q psy14380 255 VALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPI 326 (513)
Q Consensus 255 IgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g~~~~vgKlsl~~A~agI~~a~~~p~ 326 (513)
||||+++|++++|||+||.+||+++ |..+|+++ +--|-++|+-.. ++++|+.+|.+++..|+...+
T Consensus 477 i~Lg~vlsg~~~i~D~mfl~Aae~L--A~~v~~e~--~~~g~lyPpl~~--ir~iS~~Ia~aV~~~a~~~gl 542 (582)
T KOG1257|consen 477 IGLGVVLSGARRIPDEMFLAAAEAL--AEQVSEEE--LEKGRLYPPLSN--IREISANIAAAVLKYAYEEGL 542 (582)
T ss_pred HHHHHHHcCCccCCHHHHHHHHHHH--HhhCCHhH--hhcCCcCCChhH--HHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999998 89999988 668999998655 699999999999997765543
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=1e-83 Score=688.60 Aligned_cols=295 Identities=39% Similarity=0.602 Sum_probs=250.4
Q ss_pred hhhccchhhHHHHHhhCcccccceeeccchhhhhhhhhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhcccc-c
Q psy14380 8 LIMDRNERLFFRLLSENVEELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEE-L 86 (513)
Q Consensus 8 ~L~drNe~LFYrLL~~hleEllPIVYTPTVGeACQ~ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~-i 86 (513)
.||+|||+||||||++|++||||||||||||+|||+||++||+++ ++|+|++|+++ +.+++.||+.. +
T Consensus 79 ~L~~~Ne~Lfy~ll~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~---------Glyis~~d~g~--i~~~l~nwp~~~v 147 (563)
T PRK13529 79 NLQDRNETLFYRLLSDHLEEMMPIIYTPTVGEACERFSHIYRRPR---------GLFISYDDRDR--IEDILQNAPNRDI 147 (563)
T ss_pred HHHhcCchhhHHHHHhCHHHhCCeeecccHHHHHHHHhhcccCCC---------ceEeccCCHHH--HHHHHhcCCcccc
Confidence 489999999999999999999999999999999999999998653 57799999874 88888899855 5
Q ss_pred cCEEEcCch---hhhh---hhccccc------cCCCeeEEeecCCcchHHHhhccCCCcc-ccccccchhhh--------
Q psy14380 87 MPIVYTPTV---GLAC---QKFGLIF------RRPRGLFITIHDKGHCFDLLKNWTITNE-VIRDKIKMTKV-------- 145 (513)
Q Consensus 87 ~~IVVTDG~---Gig~---~g~gi~~------~p~~gL~I~I~d~g~~~~vl~d~ttnne-~L~dplY~g~~-------- 145 (513)
..||||||. |||+ +||++++ +...| | ||.+|+||++|.||||| +|.||+|+|..
T Consensus 148 ~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aG----I-~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~e 222 (563)
T PRK13529 148 KLIVVTDGERILGIGDQGIGGMGIPIGKLSLYTACGG----I-DPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEE 222 (563)
T ss_pred eEEEEeCCceeeeccccCCCcccccccHHHHhhccCC----C-ChhheeceEEecCCCchhhccCccccCcCCCCCchHH
Confidence 589999994 5444 4444432 22222 2 57777777777666665 55679999942
Q ss_pred ----HHHHHHH-HHhhc---cccccCCccchHHHHHHhcccCcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEec
Q psy14380 146 ----TKKIQEQ-RLQWY---GHFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLG 217 (513)
Q Consensus 146 ----~~~v~~a-~~~~~---~qFEDF~~~NAfrlLerYR~~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~G 217 (513)
.+++.++ +..|+ .|||||+++|||++|+|||+++|||||||||||||+|||++||+|++|++|+||||||+|
T Consensus 223 Y~~f~defv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~G 302 (563)
T PRK13529 223 YDEFVDEFVQAVKRRFPNALLQFEDFAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLG 302 (563)
T ss_pred HHHHHHHHHHHHHHhCCCeEEehhhcCCchHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEEC
Confidence 3455444 44443 399999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------------------------------------------------------------------------------
Q psy14380 218 AG------------------------------------------------------------------------------ 219 (513)
Q Consensus 218 AG------------------------------------------------------------------------------ 219 (513)
||
T Consensus 303 AGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~k 382 (563)
T PRK13529 303 AGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVK 382 (563)
T ss_pred CCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccC
Confidence 99
Q ss_pred ----------------------------------------------------CceEEEeeCCCCCCcccCCeeeccCCCc
Q psy14380 220 ----------------------------------------------------EGRCIFASGSPFPPVKMETKTYYPGQGN 247 (513)
Q Consensus 220 ----------------------------------------------------~GkalfAsGSPfp~V~~~Gk~y~pgQ~N 247 (513)
+||||||||||||||+|+|++|+|||||
T Consensus 383 PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~N 462 (563)
T PRK13529 383 PTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCN 462 (563)
T ss_pred CCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCc
Confidence 6999999999999999999999999999
Q ss_pred ceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCCcCcccchheeehhccCCCCCcee
Q psy14380 248 NAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCL 324 (513)
Q Consensus 248 N~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g~~~~vgKlsl~~A~agI~~a~~~ 324 (513)
|+|||||||||++++++++|||+|+.+||+++ |.++++++ ++-|.+.|+-.. +++++..+|.+++..|+--
T Consensus 463 N~~iFPGiglGa~~~~a~~Itd~m~~aAA~al--A~~v~~~~--l~~~~l~P~~~~--ir~vs~~VA~aVa~~A~~~ 533 (563)
T PRK13529 463 NAYIFPGLGLGVIASGARRVTDGMLMAAAHAL--ADCVPLAK--PGEGALLPPVED--IREVSRAIAIAVAKAAIEE 533 (563)
T ss_pred ceeecccchhhhhhcCCcCCCHHHHHHHHHHH--HhhCcccc--CCCCeeECCCcc--hhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999997 88999876 677788877444 4788999999998866543
No 3
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=6.2e-82 Score=674.50 Aligned_cols=294 Identities=35% Similarity=0.560 Sum_probs=249.2
Q ss_pred hhhccchhhHHHHHhhCcccccceeeccchhhhhhhhhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhcccc-c
Q psy14380 8 LIMDRNERLFFRLLSENVEELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEE-L 86 (513)
Q Consensus 8 ~L~drNe~LFYrLL~~hleEllPIVYTPTVGeACQ~ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~-i 86 (513)
.||+|||+||||||++|++||||||||||||+|||+||++||+++ ++|++++|+++ +..++.|||.. +
T Consensus 81 ~L~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~---------Gly~s~~drg~--i~~~l~Nwp~~~v 149 (559)
T PTZ00317 81 NIHDTNETLFYALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDR---------GLYLSRAHKGK--IREILKNWPYDNV 149 (559)
T ss_pred HHhhcCchHHHHHHHhCHHHhcceecCcchHHHHHHHHhcccccC---------ceEEeecCcch--HHHHHhcCCccCc
Confidence 489999999999999999999999999999999999999998653 56789999874 78888889865 4
Q ss_pred cCEEEcCch---hhhhhh---ccccc------cCCCeeEEeecCCcchHHHhhccCCCcc-ccccccchhhh--------
Q psy14380 87 MPIVYTPTV---GLACQK---FGLIF------RRPRGLFITIHDKGHCFDLLKNWTITNE-VIRDKIKMTKV-------- 145 (513)
Q Consensus 87 ~~IVVTDG~---Gig~~g---~gi~~------~p~~gL~I~I~d~g~~~~vl~d~ttnne-~L~dplY~g~~-------- 145 (513)
..||||||. |+|++| |++++ +...| | ||.+|+||++|.||||| +|.||+|+|..
T Consensus 150 ~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aG----I-~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~e 224 (559)
T PTZ00317 150 DVIVITDGSRILGLGDLGANGMGISIGKLSLYVAGGG----I-NPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDE 224 (559)
T ss_pred eEEEEeccccccccCCcccccccccccHHHHHHhhcC----C-ChhhccceEEecCCChhhhccCcccccccCCCCChhh
Confidence 589999994 544444 44331 11222 2 57777777766666665 55679999942
Q ss_pred ----HHHHHHH-HHhhc---cccccCCccchHHHHHHhcccCcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEec
Q psy14380 146 ----TKKIQEQ-RLQWY---GHFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLG 217 (513)
Q Consensus 146 ----~~~v~~a-~~~~~---~qFEDF~~~NAfrlLerYR~~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~G 217 (513)
.+|+..+ +.+|+ .|||||+++|||++|+|||+++|||||||||||||+|||+|||+|++|++|+||||||+|
T Consensus 225 Y~~f~defv~av~~~~P~~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~G 304 (559)
T PTZ00317 225 YYELLDEFMEAVSSRWPNAVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFG 304 (559)
T ss_pred HHHHHHHHHHHHHHhCCCeEEehhhcCCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEEC
Confidence 3444444 44554 399999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------------------------------------------------------------------------------
Q psy14380 218 AG------------------------------------------------------------------------------ 219 (513)
Q Consensus 218 AG------------------------------------------------------------------------------ 219 (513)
||
T Consensus 305 AGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtv 384 (559)
T PTZ00317 305 AGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTA 384 (559)
T ss_pred CCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCE
Confidence 99
Q ss_pred -------------------------------------------------CceEEEeeCCCCCCcccCCeeeccCCCccee
Q psy14380 220 -------------------------------------------------EGRCIFASGSPFPPVKMETKTYYPGQGNNAY 250 (513)
Q Consensus 220 -------------------------------------------------~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~y 250 (513)
+||||||||||||||+|+|++|+||||||+|
T Consensus 385 LIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~ 464 (559)
T PTZ00317 385 LLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLY 464 (559)
T ss_pred EEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCccee
Confidence 6999999999999999999999999999999
Q ss_pred eccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCCcCcccchheeehhccCCCCCce
Q psy14380 251 IFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQC 323 (513)
Q Consensus 251 iFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g~~~~vgKlsl~~A~agI~~a~~ 323 (513)
||||||||+++++|++|||+|+.+||+++ |.++++++ |.-|.+.|+-.. +++++..+|.+++..|+-
T Consensus 465 iFPGiglG~l~~~a~~Itd~m~~aAA~aL--A~~v~~~~--l~~~~l~P~~~~--ir~vs~~VA~aV~~~A~~ 531 (559)
T PTZ00317 465 VFPGVGLGCAIAQPSYIPDEMLIAAAASL--ATLVSEED--LREGKLYPPLED--IREISAHIAVDVIEEAQE 531 (559)
T ss_pred eccchhhhhHhhcccCCCHHHHHHHHHHH--HhhCCccc--cCCCeeeCCCcc--HhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 88999877 677888887444 478899999999886653
No 4
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=4.5e-81 Score=670.17 Aligned_cols=294 Identities=41% Similarity=0.620 Sum_probs=248.8
Q ss_pred hhhccchhhHHHHHhhCcccccceeeccchhhhhhhhhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhcccc-c
Q psy14380 8 LIMDRNERLFFRLLSENVEELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEE-L 86 (513)
Q Consensus 8 ~L~drNe~LFYrLL~~hleEllPIVYTPTVGeACQ~ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~-i 86 (513)
.||+|||+||||++++|++||||||||||||+|||+||++||+++ ++|+|++|++ +++.++.||++. +
T Consensus 104 ~L~~~Ne~Lfy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~pr---------Glyis~~d~~--~i~~~l~n~p~~~v 172 (581)
T PLN03129 104 DLQERNERLFYRVLIDNIEELLPIVYTPTVGEACQKYGSLFRRPR---------GLYISLKDKG--RVLSMLKNWPERDV 172 (581)
T ss_pred HHHhhCcccchhhhhcCHHHhCCeeeCCcHHHHHHHHHHhhcCCC---------ceeecccCHH--HHHHHHhcCCCcCc
Confidence 489999999999999999999999999999999999999998653 5779999987 488888899755 4
Q ss_pred cCEEEcCch---hhhhh---hccccc------cCCCeeEEeecCCcchHHHhhccCCCcc-ccccccchhhh--------
Q psy14380 87 MPIVYTPTV---GLACQ---KFGLIF------RRPRGLFITIHDKGHCFDLLKNWTITNE-VIRDKIKMTKV-------- 145 (513)
Q Consensus 87 ~~IVVTDG~---Gig~~---g~gi~~------~p~~gL~I~I~d~g~~~~vl~d~ttnne-~L~dplY~g~~-------- 145 (513)
..||||||. |+|+. ||++++ +...| | ||.+++||++|.||||| +|.||+|+|..
T Consensus 173 ~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aG----I-~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~e 247 (581)
T PLN03129 173 QVIVVTDGERILGLGDLGVQGMGIPVGKLDLYTAAGG----I-RPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEE 247 (581)
T ss_pred eEEEEecCcceeeccccCCCccccchhHHHHHHhhcC----C-ChhhccceEEecCCCchhhccCccccCcCCCCCchhh
Confidence 489999994 54444 344331 11222 2 57777777766666555 55779999942
Q ss_pred ----HHHHHHH-HHhh-c---cccccCCccchHHHHHHhcccCcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEe
Q psy14380 146 ----TKKIQEQ-RLQW-Y---GHFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFL 216 (513)
Q Consensus 146 ----~~~v~~a-~~~~-~---~qFEDF~~~NAfrlLerYR~~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~ 216 (513)
.+|+.++ +.+| + .|||||+++|||++|+|||+++|||||||||||||+|||+|||+|++|++|+||||||+
T Consensus 248 Y~~~~defv~av~~~fGp~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~ 327 (581)
T PLN03129 248 YDELVDEFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFA 327 (581)
T ss_pred HHHhHHHHHHHHHHHhCCccEEehhhcCCccHHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEE
Confidence 3455444 4455 3 49999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-----------------------------------------------------------------------------
Q psy14380 217 GAG----------------------------------------------------------------------------- 219 (513)
Q Consensus 217 GAG----------------------------------------------------------------------------- 219 (513)
|||
T Consensus 328 GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG 407 (581)
T PLN03129 328 GAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIG 407 (581)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEE
Confidence 999
Q ss_pred ----------------------------------------------CceEEEeeCCCCCCcccCCeeeccCCCcceeecc
Q psy14380 220 ----------------------------------------------EGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFP 253 (513)
Q Consensus 220 ----------------------------------------------~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFP 253 (513)
+||||||||||||||+++||+++||||||+|+||
T Consensus 408 ~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFP 487 (581)
T PLN03129 408 LSGVGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFP 487 (581)
T ss_pred ecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeecc
Confidence 6999999999999999999999999999999999
Q ss_pred ccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCCcCcccchheeehhccCCCCCce
Q psy14380 254 GVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQC 323 (513)
Q Consensus 254 GIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g~~~~vgKlsl~~A~agI~~a~~ 323 (513)
|||||+++++|++|||+|+.+||+++ |.++++++ |.-|.+.|+-.. +++++..+|.+++..|+-
T Consensus 488 GiglGal~~~a~~Itd~m~~aAA~aL--A~~v~~~~--l~~~~l~P~~~~--ir~vs~~VA~aVa~~A~~ 551 (581)
T PLN03129 488 GIGLGALLSGAIRVTDDMLLAAAEAL--AAQVTEEE--LAKGAIYPPFSR--IRDISAHVAAAVAAKAYE 551 (581)
T ss_pred chhhHHHhcCCcCCCHHHHHHHHHHH--HHhCCccc--CCCCeecCCCcc--hhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 88999887 677888887322 378899999998886554
No 5
>KOG1257|consensus
Probab=100.00 E-value=3.2e-74 Score=605.70 Aligned_cols=265 Identities=66% Similarity=1.119 Sum_probs=236.7
Q ss_pred CcccccceeeccchhhhhhhhhhHhh-hcccccccccceeeecCCCCchHHHHHHHhhhccccccCEEEcCchhhhhhhc
Q psy14380 24 NVEELMPIVYTPTVGLACQKSEKIKN-YSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTVGLACQKF 102 (513)
Q Consensus 24 hleEllPIVYTPTVGeACQ~ys~i~r-ys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~i~~IVVTDG~Gig~~g~ 102 (513)
.|.-|||-..- |.-+-+.+....++ +.. ...++ .|..+++||++.+||+++.+++++.++||+|+++|+.|+..
T Consensus 55 ~i~GLLPp~v~-t~d~Q~~r~~~~l~~~~~--~l~ky--~~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y 129 (582)
T KOG1257|consen 55 GIHGLLPPVVR-TQDEQALRCMNNLRSLTS--PLAKY--IYLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQY 129 (582)
T ss_pred CccccCCcccc-CHHHHHHHHHHHHHhccc--hHHHH--HHHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHh
Confidence 35677875432 33444444333332 211 12233 34468899999999999999999999999999999999999
Q ss_pred cccccCCCeeEEeecCCcchHHHhhccCCCccccccccchhhhHHHHHHHHHhhccccccCCccchHHHHHHhcccCccc
Q psy14380 103 GLIFRRPRGLFITIHDKGHCFDLLKNWTITNEVIRDKIKMTKVTKKIQEQRLQWYGHFEDFGNHNAFRFLDKYRDKYCTF 182 (513)
Q Consensus 103 gi~~~p~~gL~I~I~d~g~~~~vl~d~ttnne~L~dplY~g~~~~~v~~a~~~~~~qFEDF~~~NAfrlLerYR~~~~~F 182 (513)
|..|+.|+||+|+|+|.|++..+|.+|+.
T Consensus 130 ~~i~r~p~Glfisi~D~Ghi~~~l~nWp~--------------------------------------------------- 158 (582)
T KOG1257|consen 130 GLIFRRPQGLFISIKDKGHIKQVLKNWPE--------------------------------------------------- 158 (582)
T ss_pred hhhhccCceeEEEecccchHHHHHHhCCc---------------------------------------------------
Confidence 99999999999999999999999999952
Q ss_pred ccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCCCceEEEeeCCCCCCcccCCeeeccCCCcceeeccccchheecc
Q psy14380 183 NDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGEGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIAT 262 (513)
Q Consensus 183 NDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPGIgLGai~s 262 (513)
T Consensus 159 -------------------------------------------------------------------------------- 158 (582)
T KOG1257|consen 159 -------------------------------------------------------------------------------- 158 (582)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCCcCcccchheeehhccCCCCCceeceeeecCCCccccccCcc
Q psy14380 263 GIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDPL 342 (513)
Q Consensus 263 ~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g~~~~vgKlsl~~A~agI~~a~~~p~~~~~~~~~~~~~~d~~ 342 (513)
..+.|.+||||+|||||||+|.+||+|||||+++|||+|||+|.+||||||||||||++||+|||
T Consensus 159 ---------------~~V~~IvVTDGerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~Dpl 223 (582)
T KOG1257|consen 159 ---------------RNVKAIVVTDGERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPL 223 (582)
T ss_pred ---------------cceeEEEEeCCCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCcc
Confidence 24458999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCChhhHHHHHHHHHHHHHHhhcccccccccccCCccchhhcccccCceeeeecCCCcccccccCcccccccc
Q psy14380 343 YVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQ 422 (513)
Q Consensus 343 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (513)
|+||||+|.+|++||+|+||||+||+++|
T Consensus 224 YiGLr~~R~~g~eYd~~~dEFm~Av~~~y--------------------------------------------------- 252 (582)
T KOG1257|consen 224 YIGLRQRRVRGKEYDEFLDEFMEAVVQRY--------------------------------------------------- 252 (582)
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHh---------------------------------------------------
Confidence 99999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHHHHHhhcCCceeeeeccCCCccHHHHHHHhhccCCeeccCCccHHHHHHHHHHHHHHHhCCcCC
Q psy14380 423 KRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKIS 502 (513)
Q Consensus 423 ~~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~~~~l~~~~~~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~ 502 (513)
||+++||||||+||||||+|+|||.+||+|||||||||||+||||++|.|+||++++
T Consensus 253 -----------------------G~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~ls 309 (582)
T KOG1257|consen 253 -----------------------GPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLS 309 (582)
T ss_pred -----------------------CcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccc
Confidence 599999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEeccCC
Q psy14380 503 ECRFLFLGAGE 513 (513)
Q Consensus 503 ~~~~~~~gag~ 513 (513)
|++|||+|||+
T Consensus 310 d~~ilf~GAG~ 320 (582)
T KOG1257|consen 310 DHVILFLGAGE 320 (582)
T ss_pred cceEEEecCch
Confidence 99999999996
No 6
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-66 Score=557.85 Aligned_cols=264 Identities=53% Similarity=0.936 Sum_probs=235.3
Q ss_pred Ccccccceeeccchhhhhhh-hhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhccccccCEEEcCchhhhhhhc
Q psy14380 24 NVEELMPIVYTPTVGLACQK-SEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTVGLACQKF 102 (513)
Q Consensus 24 hleEllPIVYTPTVGeACQ~-ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~i~~IVVTDG~Gig~~g~ 102 (513)
++.-++|--.. |..+-+++ |..+.+.+. ...+| .|..+++|+++.+||+++.++++++++||+|+++|.+|+++
T Consensus 41 gl~GLLPp~v~-t~e~Q~~R~~~~~~~~~~--~l~ky--~~L~~L~~~Ne~Lfy~ll~~~~ee~~PivYTPTVG~ac~~~ 115 (563)
T PRK13529 41 GLEGLLPPAVE-TLEEQAERAYRQYQSKPT--DLEKH--IYLRNLQDRNETLFYRLLSDHLEEMMPIIYTPTVGEACERF 115 (563)
T ss_pred CCCCCCCCCcc-CHHHHHHHHHHHHhcCCC--hHHHH--HHHHHHHhcCchhhHHHHHhCHHHhCCeeecccHHHHHHHH
Confidence 35677885443 44544444 333322221 12333 45568899999999999999999999999999999999999
Q ss_pred cccccCCCeeEEeecCCcchHHHhhccCCCccccccccchhhhHHHHHHHHHhhccccccCCccchHHHHHHhcccCccc
Q psy14380 103 GLIFRRPRGLFITIHDKGHCFDLLKNWTITNEVIRDKIKMTKVTKKIQEQRLQWYGHFEDFGNHNAFRFLDKYRDKYCTF 182 (513)
Q Consensus 103 gi~~~p~~gL~I~I~d~g~~~~vl~d~ttnne~L~dplY~g~~~~~v~~a~~~~~~qFEDF~~~NAfrlLerYR~~~~~F 182 (513)
+..|+.|+||++++.|.|++..+|.+|+.
T Consensus 116 s~~~r~p~Glyis~~d~g~i~~~l~nwp~--------------------------------------------------- 144 (563)
T PRK13529 116 SHIYRRPRGLFISYDDRDRIEDILQNAPN--------------------------------------------------- 144 (563)
T ss_pred hhcccCCCceEeccCCHHHHHHHHhcCCc---------------------------------------------------
Confidence 99999999999999999999999998841
Q ss_pred ccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCCCceEEEeeCCCCCCcccCCeeeccCCCcceeeccccchheecc
Q psy14380 183 NDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGEGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIAT 262 (513)
Q Consensus 183 NDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPGIgLGai~s 262 (513)
T Consensus 145 -------------------------------------------------------------------------------- 144 (563)
T PRK13529 145 -------------------------------------------------------------------------------- 144 (563)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCCcCcccchheeehhccCCCCCceeceeeecCCCccccccCcc
Q psy14380 263 GIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDPL 342 (513)
Q Consensus 263 ~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g~~~~vgKlsl~~A~agI~~a~~~p~~~~~~~~~~~~~~d~~ 342 (513)
+ .+...|||||+|||||||+|++||+||+||+++|+++|||+|++||||+||+||||++||+||+
T Consensus 145 --------------~-~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~ 209 (563)
T PRK13529 145 --------------R-DIKLIVVTDGERILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPL 209 (563)
T ss_pred --------------c-cceEEEEeCCceeeeccccCCCcccccccHHHHhhccCCCChhheeceEEecCCCchhhccCcc
Confidence 1 1235799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCChhhHHHHHHHHHHHHHHhhcccccccccccCCccchhhcccccCceeeeecCCCcccccccCcccccccc
Q psy14380 343 YVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQ 422 (513)
Q Consensus 343 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (513)
|+|+||||.+|++||+|+||||++|+++|
T Consensus 210 YlG~r~~R~~g~eY~~f~defv~av~~~~--------------------------------------------------- 238 (563)
T PRK13529 210 YLGWRHPRIRGEEYDEFVDEFVQAVKRRF--------------------------------------------------- 238 (563)
T ss_pred ccCcCCCCCchHHHHHHHHHHHHHHHHhC---------------------------------------------------
Confidence 99999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHHHHHhhcCCceeeeeccCCCccHHHHHHHhhccCCeeccCCccHHHHHHHHHHHHHHHhCCcCC
Q psy14380 423 KRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKIS 502 (513)
Q Consensus 423 ~~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~~~~l~~~~~~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~ 502 (513)
|+++||||||+++|||++|+|||+++|||||||||||+|+||||++|+|++|++|+
T Consensus 239 ------------------------P~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~ 294 (563)
T PRK13529 239 ------------------------PNALLQFEDFAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLS 294 (563)
T ss_pred ------------------------CCeEEehhhcCCchHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChh
Confidence 89999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEeccCC
Q psy14380 503 ECRFLFLGAGE 513 (513)
Q Consensus 503 ~~~~~~~gag~ 513 (513)
|+||||+|||+
T Consensus 295 d~riv~~GAGs 305 (563)
T PRK13529 295 DQRIVFLGAGS 305 (563)
T ss_pred hcEEEEECCCH
Confidence 99999999995
No 7
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=2.5e-66 Score=554.60 Aligned_cols=264 Identities=48% Similarity=0.878 Sum_probs=234.8
Q ss_pred Ccccccceeeccchhhhhhh-hhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhccccccCEEEcCchhhhhhhc
Q psy14380 24 NVEELMPIVYTPTVGLACQK-SEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTVGLACQKF 102 (513)
Q Consensus 24 hleEllPIVYTPTVGeACQ~-ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~i~~IVVTDG~Gig~~g~ 102 (513)
++.-++|--. -|..+-+++ |..+.+.+. .+.+| .|+.+++|+++.+||+++.++++++++||+|+|+|.+|+++
T Consensus 43 ~l~GLlPp~v-~t~e~Q~~R~~~~~~~~~~--~l~Ky--~~L~~L~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~ 117 (559)
T PTZ00317 43 GIEGLLPPTV-ETLEQQVERLWTQFNRIET--PINKY--QFLRNIHDTNETLFYALLLKYLKELLPIIYTPTVGEACQNY 117 (559)
T ss_pred CCCCCCCCCc-cCHHHHHHHHHHHHhhCCC--hHHHH--HHHHHHhhcCchHHHHHHHhCHHHhcceecCcchHHHHHHH
Confidence 3567788533 344444444 333322211 12333 45568899999999999999999999999999999999999
Q ss_pred cccccCCCeeEEeecCCcchHHHhhccCCCccccccccchhhhHHHHHHHHHhhccccccCCccchHHHHHHhcccCccc
Q psy14380 103 GLIFRRPRGLFITIHDKGHCFDLLKNWTITNEVIRDKIKMTKVTKKIQEQRLQWYGHFEDFGNHNAFRFLDKYRDKYCTF 182 (513)
Q Consensus 103 gi~~~p~~gL~I~I~d~g~~~~vl~d~ttnne~L~dplY~g~~~~~v~~a~~~~~~qFEDF~~~NAfrlLerYR~~~~~F 182 (513)
+..++.|+||++++.|.|++..+|.+|+.
T Consensus 118 s~~~r~p~Gly~s~~drg~i~~~l~Nwp~--------------------------------------------------- 146 (559)
T PTZ00317 118 SNLFQRDRGLYLSRAHKGKIREILKNWPY--------------------------------------------------- 146 (559)
T ss_pred HhcccccCceEEeecCcchHHHHHhcCCc---------------------------------------------------
Confidence 99999999999999999999999998842
Q ss_pred ccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCCCceEEEeeCCCCCCcccCCeeeccCCCcceeeccccchheecc
Q psy14380 183 NDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGEGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIAT 262 (513)
Q Consensus 183 NDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPGIgLGai~s 262 (513)
T Consensus 147 -------------------------------------------------------------------------------- 146 (559)
T PTZ00317 147 -------------------------------------------------------------------------------- 146 (559)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCCcCcccchheeehhccCCCCCceeceeeecCCCccccccCcc
Q psy14380 263 GIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDPL 342 (513)
Q Consensus 263 ~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g~~~~vgKlsl~~A~agI~~a~~~p~~~~~~~~~~~~~~d~~ 342 (513)
+ .+...|||||+|||||||+|++||+||+||+++|+++|||+|++||||+||+||||++||+||+
T Consensus 147 --------------~-~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPl 211 (559)
T PTZ00317 147 --------------D-NVDVIVITDGSRILGLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPL 211 (559)
T ss_pred --------------c-CceEEEEeccccccccCCcccccccccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcc
Confidence 1 1235799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCChhhHHHHHHHHHHHHHHhhcccccccccccCCccchhhcccccCceeeeecCCCcccccccCcccccccc
Q psy14380 343 YVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQ 422 (513)
Q Consensus 343 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (513)
|+|+||+|.+|++||+|+||||++|+++|
T Consensus 212 YlG~r~~R~~g~eY~~f~defv~av~~~~--------------------------------------------------- 240 (559)
T PTZ00317 212 YLGLREKRLDDDEYYELLDEFMEAVSSRW--------------------------------------------------- 240 (559)
T ss_pred cccccCCCCChhhHHHHHHHHHHHHHHhC---------------------------------------------------
Confidence 99999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHHHHHhhcCCceeeeeccCCCccHHHHHHHhhccCCeeccCCccHHHHHHHHHHHHHHHhCCcCC
Q psy14380 423 KRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKIS 502 (513)
Q Consensus 423 ~~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~~~~l~~~~~~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~ 502 (513)
|+++||||||+++|||++|+|||+++|||||||||||+|+||||++|+|++|++|+
T Consensus 241 ------------------------P~~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~ 296 (559)
T PTZ00317 241 ------------------------PNAVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPE 296 (559)
T ss_pred ------------------------CCeEEehhhcCCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChh
Confidence 89999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEeccCC
Q psy14380 503 ECRFLFLGAGE 513 (513)
Q Consensus 503 ~~~~~~~gag~ 513 (513)
|+||||+|||+
T Consensus 297 d~riv~~GAGs 307 (559)
T PTZ00317 297 EQRIVFFGAGS 307 (559)
T ss_pred hcEEEEECCCH
Confidence 99999999995
No 8
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=3.1e-66 Score=555.87 Aligned_cols=264 Identities=59% Similarity=1.002 Sum_probs=233.0
Q ss_pred cccccceeeccchhhhhhh-hhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhccccccCEEEcCchhhhhhhcc
Q psy14380 25 VEELMPIVYTPTVGLACQK-SEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTVGLACQKFG 103 (513)
Q Consensus 25 leEllPIVYTPTVGeACQ~-ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~i~~IVVTDG~Gig~~g~g 103 (513)
|.-+||--.. |.-+-+++ |..+.+.+. ...+| .|..+++|+++.+||+++.++++++++||+|+|+|.+|+.++
T Consensus 67 l~GLlP~~v~-t~e~Q~~R~~~~~~~~~~--~l~ky--~~L~~L~~~Ne~Lfy~ll~~~~~e~lpiiYTPtVg~ac~~~s 141 (581)
T PLN03129 67 LRGLLPPAVL-SQELQVKRFMENLRALES--PLAKY--RALMDLQERNERLFYRVLIDNIEELLPIVYTPTVGEACQKYG 141 (581)
T ss_pred CccCCCCCcC-CHHHHHHHHHHHHhccCC--cHHHH--HHHHHHHhhCcccchhhhhcCHHHhCCeeeCCcHHHHHHHHH
Confidence 4567775332 44444444 333322211 12333 455688999999999999999999999999999999999999
Q ss_pred ccccCCCeeEEeecCCcchHHHhhccCCCccccccccchhhhHHHHHHHHHhhccccccCCccchHHHHHHhcccCcccc
Q psy14380 104 LIFRRPRGLFITIHDKGHCFDLLKNWTITNEVIRDKIKMTKVTKKIQEQRLQWYGHFEDFGNHNAFRFLDKYRDKYCTFN 183 (513)
Q Consensus 104 i~~~p~~gL~I~I~d~g~~~~vl~d~ttnne~L~dplY~g~~~~~v~~a~~~~~~qFEDF~~~NAfrlLerYR~~~~~FN 183 (513)
..|+.|+||++++.|++++..++.+|+.
T Consensus 142 ~~~r~prGlyis~~d~~~i~~~l~n~p~---------------------------------------------------- 169 (581)
T PLN03129 142 SLFRRPRGLYISLKDKGRVLSMLKNWPE---------------------------------------------------- 169 (581)
T ss_pred HhhcCCCceeecccCHHHHHHHHhcCCC----------------------------------------------------
Confidence 9999999999999999988888887731
Q ss_pred cCcchhHHHHHHHHHhhhhhcCcccccceEEEecCCCceEEEeeCCCCCCcccCCeeeccCCCcceeeccccchheeccc
Q psy14380 184 DDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGEGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATG 263 (513)
Q Consensus 184 DDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPGIgLGai~s~ 263 (513)
T Consensus 170 -------------------------------------------------------------------------------- 169 (581)
T PLN03129 170 -------------------------------------------------------------------------------- 169 (581)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCCcCcccchheeehhccCCCCCceeceeeecCCCccccccCccc
Q psy14380 264 IHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDPLY 343 (513)
Q Consensus 264 a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g~~~~vgKlsl~~A~agI~~a~~~p~~~~~~~~~~~~~~d~~y 343 (513)
+.+ ..+|||||+|||||||+|++||+||+||++||+++|||+|++|||||||+||||++||+||+|
T Consensus 170 -------------~~v-~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~Y 235 (581)
T PLN03129 170 -------------RDV-QVIVVTDGERILGLGDLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFY 235 (581)
T ss_pred -------------cCc-eEEEEecCcceeeccccCCCccccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCccc
Confidence 112 247999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHhhcccccccccccCCccchhhcccccCceeeeecCCCcccccccCccccccccc
Q psy14380 344 VGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQK 423 (513)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (513)
+|+|++|.+|++||+|+||||++|+++|
T Consensus 236 lG~r~~Rv~g~eY~~~~defv~av~~~f---------------------------------------------------- 263 (581)
T PLN03129 236 IGLRQPRLTGEEYDELVDEFMEAVKQRW---------------------------------------------------- 263 (581)
T ss_pred cCcCCCCCchhhHHHhHHHHHHHHHHHh----------------------------------------------------
Confidence 9999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHHhhcCCceeeeeccCCCccHHHHHHHhhccCCeeccCCccHHHHHHHHHHHHHHHhCCcCCc
Q psy14380 424 RTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISE 503 (513)
Q Consensus 424 ~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~~~~l~~~~~~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~ 503 (513)
||+++||||||+++|||++|+|||+++|||||||||||+|++|||+||+|++|++|+|
T Consensus 264 ----------------------Gp~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d 321 (581)
T PLN03129 264 ----------------------GPKVLVQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLAD 321 (581)
T ss_pred ----------------------CCccEEehhhcCCccHHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhh
Confidence 5999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCC
Q psy14380 504 CRFLFLGAGE 513 (513)
Q Consensus 504 ~~~~~~gag~ 513 (513)
+||||+|||+
T Consensus 322 ~riv~~GAGs 331 (581)
T PLN03129 322 QRILFAGAGE 331 (581)
T ss_pred ceEEEECCCH
Confidence 9999999995
No 9
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=4.1e-62 Score=461.55 Aligned_cols=90 Identities=70% Similarity=1.259 Sum_probs=77.6
Q ss_pred eeecCCceeeccCCCCCCCcCcccchheeehhccCCCCCceeceeeecCCCccccccCcccccccccCCChhhHHHHHHH
Q psy14380 283 IVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDE 362 (513)
Q Consensus 283 ~vVTdg~~Ilg~gDlG~~g~~~~vgKlsl~~A~agI~~a~~~p~~~~~~~~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~ 362 (513)
+|||||+|||||||+|.+||+||+||+++|+++|||+|++||||+||+||||++||+||+|+|+|++|.+|++|++|+||
T Consensus 70 ~VVTDG~rILGlGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvde 149 (182)
T PF00390_consen 70 IVVTDGERILGLGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDE 149 (182)
T ss_dssp EEEE-SSSBTTTBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHH
T ss_pred EEEeCchhhccccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q psy14380 363 FMKAVVKRYG 372 (513)
Q Consensus 363 ~~~~~~~~~~ 372 (513)
||+||+++||
T Consensus 150 fv~av~~~~g 159 (182)
T PF00390_consen 150 FVEAVKRRFG 159 (182)
T ss_dssp HHHHHHHHHG
T ss_pred HHHHHHHHhC
Confidence 9999999995
No 10
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=3.9e-47 Score=394.88 Aligned_cols=280 Identities=25% Similarity=0.327 Sum_probs=209.3
Q ss_pred ccchhhHHHHHhhCcccccceeeccchhhhhhhhhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhccccccCEE
Q psy14380 11 DRNERLFFRLLSENVEELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEELMPIV 90 (513)
Q Consensus 11 drNe~LFYrLL~~hleEllPIVYTPTVGeACQ~ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~i~~IV 90 (513)
++|+.+||+++..|..|+|||+||||||++|++|++.++++. ++..++ | ..+|
T Consensus 29 ~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~-------------~yt~~~---------n-----~vaV 81 (432)
T COG0281 29 DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY-------------SYTARG---------N-----LVAV 81 (432)
T ss_pred CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-------------hcCCCC---------c-----eEEE
Confidence 569999999999999999999999999999999998876431 222222 1 2489
Q ss_pred EcCch---hhhhhh-ccccccCCCeeEEeec---------CCcchHHHhhccCCCccccccccchhhhHHHHHHHHHhhc
Q psy14380 91 YTPTV---GLACQK-FGLIFRRPRGLFITIH---------DKGHCFDLLKNWTITNEVIRDKIKMTKVTKKIQEQRLQWY 157 (513)
Q Consensus 91 VTDG~---Gig~~g-~gi~~~p~~gL~I~I~---------d~g~~~~vl~d~ttnne~L~dplY~g~~~~~v~~a~~~~~ 157 (513)
||||. |||.+| .+ |+||+.+ ... ..||.+|.++++| +.+.+.+..+.|.
T Consensus 82 vTDgtaVLGLGniGp~a-------g~pVmeGKa~Lfk~faGid-~~pI~ld~~~~~e----------i~~~Vkal~p~Fg 143 (432)
T COG0281 82 VTDGTAVLGLGNIGPLA-------GKPVMEGKAVLFKAFAGID-VLPIELDVGTNNE----------IIEFVKALEPTFG 143 (432)
T ss_pred EECCceeeccccccccc-------CcchhhhHHHHHHHhcCCC-ceeeEeeCCChHH----------HHHHHHHhhhcCC
Confidence 99995 666555 32 4555432 111 2344444455554 5556666677776
Q ss_pred c---ccccCCccchHHHHHHhcccCcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC---------------
Q psy14380 158 G---HFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG--------------- 219 (513)
Q Consensus 158 ~---qFEDF~~~NAfrlLerYR~~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG--------------- 219 (513)
+ |||||..-|+.+.+.|||..+|||||||||||+|+|||++||+|++|++|+|+||||+|||
T Consensus 144 ginLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~ 223 (432)
T COG0281 144 GINLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGV 223 (432)
T ss_pred CcceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCC
Confidence 5 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------CceEEEeeCCCC
Q psy14380 220 --------------------------------------------------------------------EGRCIFASGSPF 231 (513)
Q Consensus 220 --------------------------------------------------------------------~GkalfAsGSPf 231 (513)
+-.+||+...|-
T Consensus 224 ~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~PiIfalaNP~ 303 (432)
T COG0281 224 KEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTLDLALAGADVLIGVSGVGAFTEEMVKEMAKHPIIFALANPT 303 (432)
T ss_pred CcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccccccccCCCEEEEcCCCCCcCHHHHHHhccCCEEeecCCCC
Confidence 346778888887
Q ss_pred CCccc--------------CCeeeccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCC
Q psy14380 232 PPVKM--------------ETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDL 297 (513)
Q Consensus 232 p~V~~--------------~Gk~y~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDl 297 (513)
|++.. +|+...|+|+||+++|||||+|++.++|++|||+|..+||+++ |.++.+...
T Consensus 304 pEi~Pe~a~~~~~~aaivaTGrsd~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~Ai--A~~~~~~~~------- 374 (432)
T COG0281 304 PEITPEDAKEWGDGAAIVATGRSDYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAI--ADLAREEVL------- 374 (432)
T ss_pred ccCCHHHHhhcCCCCEEEEeCCCCCcccccceeEcchhhhhhHhhccccCCHHHHHHHHHHH--HhhccccCC-------
Confidence 77653 4677888899999999999999999999999999999999997 777665432
Q ss_pred CCCCcCccc--chheeehhccCCCCCceeceeeecCCCccccccCcccccccccCCChhhHHHHHHHHH
Q psy14380 298 GACGMGIPV--GKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFM 364 (513)
Q Consensus 298 G~~g~~~~v--gKlsl~~A~agI~~a~~~p~~~~~~~~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~ 364 (513)
+..-.|-|. +.++. +|.|+.+.|....+. |.++..-++|.+.+++++
T Consensus 375 ~~~iiP~~~d~r~~~~-vA~AVa~aA~~~GvA-------------------~~~~~~~~~~~~~~~~~~ 423 (432)
T COG0281 375 EEYIIPPPFDPRVISR-VAVAVAKAAMEEGVA-------------------RRPIDDEEAYEQALEARL 423 (432)
T ss_pred cCCCCCCCCchhHHHH-HHHHHHHHHHHcCCc-------------------cCCCCCHHHHHHHHHHHh
Confidence 111122121 44444 677776655443221 234455566777666554
No 11
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=3e-44 Score=397.42 Aligned_cols=252 Identities=25% Similarity=0.303 Sum_probs=189.6
Q ss_pred ccccceeeccchhhhhhhhhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhccccccCEEEcCch---hhhhhhc
Q psy14380 26 EELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTV---GLACQKF 102 (513)
Q Consensus 26 eEllPIVYTPTVGeACQ~ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~i~~IVVTDG~---Gig~~g~ 102 (513)
.+=|.++|||||+++|++ |++.++ .. +++.+|+. . .+|||||. |+|+.|.
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~--------~~--~~~t~r~n----------~----v~VvtdG~~vLGLGdiG~ 86 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPL--------NA--FRFTSRGN----------L----VGVITNGTAVLGLGNIGA 86 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChH--------hh--hhhhccCc----------E----EEEEecchhhccCCCcCc
Confidence 344789999999999997 555332 11 23344431 1 48999994 6665554
Q ss_pred cccccCCCeeEEeecCCcchHHH-----hhccCCCccccccccchhhhHHHHHHHHHhhcc-ccccCCccchHHHHHHhc
Q psy14380 103 GLIFRRPRGLFITIHDKGHCFDL-----LKNWTITNEVIRDKIKMTKVTKKIQEQRLQWYG-HFEDFGNHNAFRFLDKYR 176 (513)
Q Consensus 103 gi~~~p~~gL~I~I~d~g~~~~v-----l~d~ttnne~L~dplY~g~~~~~v~~a~~~~~~-qFEDF~~~NAfrlLerYR 176 (513)
. .++||+.+ ...+... ..+.++|+ .|| ..+.+.+.+..++|.+ |||||+++|||++|+|||
T Consensus 87 ~------a~~pvmeG-K~~L~~~~agid~~di~~~~---~dp---d~~v~~v~a~~~~fg~i~lED~~~p~~f~il~~~~ 153 (764)
T PRK12861 87 L------ASKPVMEG-KAVLFKKFAGIDVFDIEINE---TDP---DKLVDIIAGLEPTFGGINLEDIKAPECFTVERKLR 153 (764)
T ss_pred c------cccchHHH-HHHHHhhccCCCccccccCC---CCH---HHHHHHHHHHHhhcCCceeeeccCchHHHHHHHHH
Confidence 3 24666432 1111100 12233444 455 3444556666777765 999999999999999999
Q ss_pred c--cCcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC-----------------------------------
Q psy14380 177 D--KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG----------------------------------- 219 (513)
Q Consensus 177 ~--~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG----------------------------------- 219 (513)
+ .+|||||||||||+|+|||++||+|++|++|+|+||||+|||
T Consensus 154 ~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~ 233 (764)
T PRK12861 154 ERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTT 233 (764)
T ss_pred hcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcc
Confidence 9 599999999999999999999999999999999999999999
Q ss_pred ----------------------------------------------CceEEEeeCCCCCCccc-------------CCee
Q psy14380 220 ----------------------------------------------EGRCIFASGSPFPPVKM-------------ETKT 240 (513)
Q Consensus 220 ----------------------------------------------~GkalfAsGSPfp~V~~-------------~Gk~ 240 (513)
+..+|||...|-|++++ .||+
T Consensus 234 ~l~~~k~~~a~~~~~~~L~eai~~advliG~S~~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe~a~~~~g~aivaTGrs 313 (764)
T PRK12861 234 LMDPDKERFAQETDARTLAEVIGGADVFLGLSAGGVLKAEMLKAMAARPLILALANPTPEIFPELAHATRDDVVIATGRS 313 (764)
T ss_pred cCCHHHHHHHhhcCCCCHHHHHhcCCEEEEcCCCCCCCHHHHHHhccCCEEEECCCCCccCCHHHHHhcCCCEEEEeCCc
Confidence 58999999999988754 5799
Q ss_pred eccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCcee----------eccCCCC--CCCcCcccch
Q psy14380 241 YYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERI----------LGLGDLG--ACGMGIPVGK 308 (513)
Q Consensus 241 y~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~I----------lg~gDlG--~~g~~~~vgK 308 (513)
++|||+||+|+|||||+|++.++|++|||+|+.+||+++ |.++++++.- +.+|-.+ |.-.. .+
T Consensus 314 ~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~al--A~~~~~~~~~~~~~~~~~~~~~~~~~~iiP~~~~---~~ 388 (764)
T PRK12861 314 DYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAI--AGLAEEEQNDVVAAAYGAYDVSFGPQYLIPKPFD---PR 388 (764)
T ss_pred CCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHH--HhhCCcccCHHHHHhhccccccCCCCCCCCCCCC---hh
Confidence 999999999999999999999999999999999999997 8888876411 2244444 42222 57
Q ss_pred heeehhccCCCCCc
Q psy14380 309 LSLYTALAGIKPHQ 322 (513)
Q Consensus 309 lsl~~A~agI~~a~ 322 (513)
++..+|.++...|.
T Consensus 389 v~~~VA~aVa~~a~ 402 (764)
T PRK12861 389 LIVRIAPAVAKAAM 402 (764)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887554
No 12
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=2.8e-42 Score=382.93 Aligned_cols=251 Identities=23% Similarity=0.297 Sum_probs=182.2
Q ss_pred cccceeeccchhhhhhhhhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhccccccCEEEcCch---hhhhhhcc
Q psy14380 27 ELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTV---GLACQKFG 103 (513)
Q Consensus 27 EllPIVYTPTVGeACQ~ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~i~~IVVTDG~---Gig~~g~g 103 (513)
+=|.++|||+|+++|+. |.+.++ ..| +...|+ -- .+|||||. |+|+.|..
T Consensus 39 ~dl~~~ytpgv~~~~~~---i~~~~~--------~~~--~~t~~~-----------n~---v~vvtdg~~vLGlGd~G~~ 91 (763)
T PRK12862 39 RDLALAYSPGVAAPCLE---IAADPA--------NAA--RYTSRG-----------NL---VAVVSNGTAVLGLGNIGPL 91 (763)
T ss_pred HHceeeeCCchHHHHHH---HHhChH--------hhh--hcccCC-----------cE---EEEEechhhhccccccCcc
Confidence 44778999999999996 444322 112 222222 11 48999994 66666553
Q ss_pred ccccCCCeeEEeecCCcchHHH-----hhccCCCccccccccchhhhHHHHHHHHHhh-ccccccCCccchHHHHHHhcc
Q psy14380 104 LIFRRPRGLFITIHDKGHCFDL-----LKNWTITNEVIRDKIKMTKVTKKIQEQRLQW-YGHFEDFGNHNAFRFLDKYRD 177 (513)
Q Consensus 104 i~~~p~~gL~I~I~d~g~~~~v-----l~d~ttnne~L~dplY~g~~~~~v~~a~~~~-~~qFEDF~~~NAfrlLerYR~ 177 (513)
.++||+.+ ...+... ..+.++|++ || ..+.+.+....+.| ..|||||+++|||++|+|||+
T Consensus 92 ------~~~pv~eg-K~~l~~~~~gi~~~~i~~~~~---d~---d~~v~~v~~~~p~f~~i~~ED~~~~~~f~i~~~~~~ 158 (763)
T PRK12862 92 ------ASKPVMEG-KAVLFKKFAGIDVFDIELDES---DP---DKLVEIVAALEPTFGGINLEDIKAPECFYIERELRE 158 (763)
T ss_pred ------cccchHHH-HHHHHHhhcCCCccccccCCC---CH---HHHHHHHHHhCCCcceeeeecccCchHHHHHHHHHh
Confidence 24666432 1111111 122334444 44 11112222222333 239999999999999999999
Q ss_pred c--CcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC------------------------------------
Q psy14380 178 K--YCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG------------------------------------ 219 (513)
Q Consensus 178 ~--~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG------------------------------------ 219 (513)
+ +|||||||||||+|+|||++||+|++|++|+|+||||+|||
T Consensus 159 ~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~ 238 (763)
T PRK12862 159 RMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTEL 238 (763)
T ss_pred cCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCcc
Confidence 8 89999999999999999999999999999999999999999
Q ss_pred ---------------------------------------------CceEEEeeCCCCCCccc-------------CCeee
Q psy14380 220 ---------------------------------------------EGRCIFASGSPFPPVKM-------------ETKTY 241 (513)
Q Consensus 220 ---------------------------------------------~GkalfAsGSPfp~V~~-------------~Gk~y 241 (513)
+..+|||...|-|++++ .||++
T Consensus 239 l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~~~~~~~i~atGrs~ 318 (763)
T PRK12862 239 MDPWKARYAQKTDARTLAEVIEGADVFLGLSAAGVLKPEMVKKMAPRPLIFALANPTPEILPEEARAVRPDAIIATGRSD 318 (763)
T ss_pred ccHHHHHHhhhcccCCHHHHHcCCCEEEEcCCCCCCCHHHHHHhccCCEEEeCCCCcccCCHHHHHHhcCCEEEEECCcC
Confidence 58999999999988764 47999
Q ss_pred ccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCce----------eeccCC--CCCCCcCcccchh
Q psy14380 242 YPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGER----------ILGLGD--LGACGMGIPVGKL 309 (513)
Q Consensus 242 ~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~----------Ilg~gD--lG~~g~~~~vgKl 309 (513)
+|||+||+|+|||||+|++.+++++|||+|+.+||+++ |.++++++- -+++|- +-|.-.. +++
T Consensus 319 ~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~al--a~~~~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~---~~v 393 (763)
T PRK12862 319 YPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAI--AELAREEQSDVVAAAYGGEDLSFGPDYLIPKPFD---PRL 393 (763)
T ss_pred CCCcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHH--HhcccccCCHHHHHhhccccccCCCCcccCCCCC---hhH
Confidence 99999999999999999999999999999999999997 888887631 112333 4442111 678
Q ss_pred eeehhccCCCCCc
Q psy14380 310 SLYTALAGIKPHQ 322 (513)
Q Consensus 310 sl~~A~agI~~a~ 322 (513)
+..+|.++...|.
T Consensus 394 ~~~va~aVa~~a~ 406 (763)
T PRK12862 394 ILKIAPAVAQAAM 406 (763)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877553
No 13
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=5.5e-42 Score=379.43 Aligned_cols=218 Identities=25% Similarity=0.349 Sum_probs=168.3
Q ss_pred ccccceeeccchhhhhhhhhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhccccccCEEEcCch---hhhhhhc
Q psy14380 26 EELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTV---GLACQKF 102 (513)
Q Consensus 26 eEllPIVYTPTVGeACQ~ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~i~~IVVTDG~---Gig~~g~ 102 (513)
.+=|.++||||||++|+ +|++.++ ..| ++.+|+. . .+|||||. |+|..|.
T Consensus 30 ~~dl~~~Ytpgv~~~c~---~i~~~~~--------~~~--~~t~~~n---------~-----v~vvtdg~~vLGlGd~G~ 82 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCL---EIAKDPA--------DAY--KYTARGN---------L-----VAVISNGTAVLGLGNIGA 82 (752)
T ss_pred hhhcceecCCchHHHHH---HHHhChh--------hcc--ccccCCc---------E-----EEEEccchhhcccccccc
Confidence 34578999999999999 4555332 222 4455542 0 48999994 6665554
Q ss_pred cccccCCCeeEEeecCCcchHHH-----hhccCCCccccccccchhhhHHHHHHHHHhhc----cccccCCccchHHHHH
Q psy14380 103 GLIFRRPRGLFITIHDKGHCFDL-----LKNWTITNEVIRDKIKMTKVTKKIQEQRLQWY----GHFEDFGNHNAFRFLD 173 (513)
Q Consensus 103 gi~~~p~~gL~I~I~d~g~~~~v-----l~d~ttnne~L~dplY~g~~~~~v~~a~~~~~----~qFEDF~~~NAfrlLe 173 (513)
. .|+||..+ ...+... ..+.++|++. +++.+..++..|+ .|||||+++|||++|+
T Consensus 83 ~------a~~pv~eg-K~~l~~~~~gid~~~i~~~~~d---------~de~v~~v~~~~p~~g~i~~ED~~~p~~f~i~~ 146 (752)
T PRK07232 83 L------ASKPVMEG-KGVLFKKFAGIDVFDIEVDEED---------PDKFIEAVAALEPTFGGINLEDIKAPECFYIEE 146 (752)
T ss_pred c------cCccHHHH-HHHHHHhhcCCCccccccCCCC---------HHHHHHHHHHhCCCccEEeeeecCCchHHHHHH
Confidence 3 35665432 1111100 1223344441 3333344444442 3999999999999999
Q ss_pred Hhccc--CcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC--------------------------------
Q psy14380 174 KYRDK--YCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG-------------------------------- 219 (513)
Q Consensus 174 rYR~~--~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG-------------------------------- 219 (513)
|||++ +|||||||||||+|+|||++||+|++|++|+|+||||+|||
T Consensus 147 ~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~ 226 (752)
T PRK07232 147 KLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKG 226 (752)
T ss_pred HHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCC
Confidence 99998 79999999999999999999999999999999999999999
Q ss_pred -------------------------------------------------CceEEEeeCCCCCCccc-------------C
Q psy14380 220 -------------------------------------------------EGRCIFASGSPFPPVKM-------------E 237 (513)
Q Consensus 220 -------------------------------------------------~GkalfAsGSPfp~V~~-------------~ 237 (513)
+..+|||...|-|++++ .
T Consensus 227 r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~~~~~~~i~at 306 (752)
T PRK07232 227 RTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGLSAAGVLTPEMVKSMADNPIIFALANPDPEITPEEAKAVRPDAIIAT 306 (752)
T ss_pred CcccccHHHHHHhccCCCCCHHHHHcCCCEEEEcCCCCCCCHHHHHHhccCCEEEecCCCCccCCHHHHHHhcCCEEEEE
Confidence 58999999999998764 4
Q ss_pred CeeeccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCC
Q psy14380 238 TKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDG 288 (513)
Q Consensus 238 Gk~y~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg 288 (513)
||+++|||+||+|+||||++|++.+++++|||+|+.+||+++ |.++++.
T Consensus 307 Grs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~al--a~~~~~~ 355 (752)
T PRK07232 307 GRSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAI--AELAREE 355 (752)
T ss_pred CCcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHHHHH--Hhhcccc
Confidence 699999999999999999999999999999999999999997 7888775
No 14
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=2.5e-39 Score=358.39 Aligned_cols=177 Identities=31% Similarity=0.522 Sum_probs=162.6
Q ss_pred CceEEEeeCCCCCCcccCCeeeccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCC
Q psy14380 220 EGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGA 299 (513)
Q Consensus 220 ~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~ 299 (513)
.||+-+.+..|.....+....| +|||| ..|..+.+.|+.++.++.+++.+ +|||||+|||||||+||
T Consensus 20 ~gk~~~~~~~~~~~~~dl~l~Y----------tPgVa--~~c~~i~~~p~~~~~~t~r~n~v-~VvtdG~~vLGLGdiG~ 86 (764)
T PRK12861 20 PGKISVVASKPLVTQRDLALAY----------TPGVA--SACEEIAADPLNAFRFTSRGNLV-GVITNGTAVLGLGNIGA 86 (764)
T ss_pred CCeEEEEeccccCChHHceeec----------CCchH--HHHHHHHhChHhhhhhhccCcEE-EEEecchhhccCCCcCc
Confidence 4899999999999999999999 88888 56777999999999999999987 69999999999999999
Q ss_pred CC-cCcccchheeehhccCCCCCceeceeeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhhccccccc
Q psy14380 300 CG-MGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQ 378 (513)
Q Consensus 300 ~g-~~~~vgKlsl~~A~agI~~a~~~p~~~~~~~~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (513)
.| +|||+||+.||+++|||+ ++ |+|+|| +|| |+|| |||+++.++||
T Consensus 87 ~a~~pvmeGK~~L~~~~agid---~~----di~~~~----~dp---------------d~~v-~~v~a~~~~fg------ 133 (764)
T PRK12861 87 LASKPVMEGKAVLFKKFAGID---VF----DIEINE----TDP---------------DKLV-DIIAGLEPTFG------ 133 (764)
T ss_pred ccccchHHHHHHHHhhccCCC---cc----ccccCC----CCH---------------HHHH-HHHHHHHhhcC------
Confidence 96 899999999999999999 55 555555 788 8888 88888888884
Q ss_pred ccccCCccchhhcccccCceeeeecCCCcccccccCcccccccccccccchhhHHHHHHHHHHHhhcCCceeeeeccCCC
Q psy14380 379 FEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGN 458 (513)
Q Consensus 379 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~ 458 (513)
. ||||||++
T Consensus 134 --------------------------------------------------------------------~---i~lED~~~ 142 (764)
T PRK12861 134 --------------------------------------------------------------------G---INLEDIKA 142 (764)
T ss_pred --------------------------------------------------------------------C---ceeeeccC
Confidence 4 99999999
Q ss_pred ccHHHHHHHhhc--cCCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccCC
Q psy14380 459 HNAFRFLDKYRD--KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513 (513)
Q Consensus 459 ~~~~~~l~~~~~--~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag~ 513 (513)
+|||++|+|||+ ++|||||||||||+|++|||++|+|++||+|+|+||||+|||+
T Consensus 143 p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGa 199 (764)
T PRK12861 143 PECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGA 199 (764)
T ss_pred chHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhH
Confidence 999999999999 4999999999999999999999999999999999999999995
No 15
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=1.5e-38 Score=353.22 Aligned_cols=177 Identities=28% Similarity=0.480 Sum_probs=161.3
Q ss_pred CceEEEeeCCCCCCcccCCeeeccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCC
Q psy14380 220 EGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGA 299 (513)
Q Consensus 220 ~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~ 299 (513)
.||+-+.+..|.....+....| +|||+ .+|..+.+.|+.++.++.+++.+ +|||||+|||||||+|+
T Consensus 24 ~gk~~~~~~~~~~~~~dl~~~y----------tpgv~--~~~~~i~~~~~~~~~~t~~~n~v-~vvtdg~~vLGlGd~G~ 90 (763)
T PRK12862 24 PGKIEIAPTKPLANQRDLALAY----------SPGVA--APCLEIAADPANAARYTSRGNLV-AVVSNGTAVLGLGNIGP 90 (763)
T ss_pred CCeEEEEecCCCCCHHHceeee----------CCchH--HHHHHHHhChHhhhhcccCCcEE-EEEechhhhccccccCc
Confidence 4899999999999999999999 88887 77888999999999999999987 69999999999999999
Q ss_pred CC-cCcccchheeehhccCCCCCceeceeeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhhccccccc
Q psy14380 300 CG-MGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQ 378 (513)
Q Consensus 300 ~g-~~~~vgKlsl~~A~agI~~a~~~p~~~~~~~~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (513)
.| ||||+||++||+++|||+ ++||++|. +|| ||||++|+.+|
T Consensus 91 ~~~~pv~egK~~l~~~~~gi~---~~~i~~~~--------~d~-------------------d~~v~~v~~~~------- 133 (763)
T PRK12862 91 LASKPVMEGKAVLFKKFAGID---VFDIELDE--------SDP-------------------DKLVEIVAALE------- 133 (763)
T ss_pred ccccchHHHHHHHHHhhcCCC---ccccccCC--------CCH-------------------HHHHHHHHHhC-------
Confidence 95 999999999999999999 77666664 377 67777777776
Q ss_pred ccccCCccchhhcccccCceeeeecCCCcccccccCcccccccccccccchhhHHHHHHHHHHHhhcCCceeeeeccCCC
Q psy14380 379 FEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGN 458 (513)
Q Consensus 379 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~ 458 (513)
|+|| .||||||++
T Consensus 134 ----------------------------------------------------------------p~f~---~i~~ED~~~ 146 (763)
T PRK12862 134 ----------------------------------------------------------------PTFG---GINLEDIKA 146 (763)
T ss_pred ----------------------------------------------------------------CCcc---eeeeecccC
Confidence 4555 499999999
Q ss_pred ccHHHHHHHhhcc--CCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccCC
Q psy14380 459 HNAFRFLDKYRDK--YCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513 (513)
Q Consensus 459 ~~~~~~l~~~~~~--~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag~ 513 (513)
+|||++|+|||++ +|||||||||||+|++|||++|+|++||+++|+||||+|||+
T Consensus 147 ~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGa 203 (763)
T PRK12862 147 PECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGA 203 (763)
T ss_pred chHHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhH
Confidence 9999999999999 799999999999999999999999999999999999999995
No 16
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=1.8e-37 Score=343.60 Aligned_cols=177 Identities=31% Similarity=0.508 Sum_probs=162.2
Q ss_pred CceEEEeeCCCCCCcccCCeeeccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCC
Q psy14380 220 EGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGA 299 (513)
Q Consensus 220 ~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~ 299 (513)
.||+-+.+..|.....+....| +|||| ..|..+.+.|+.++.++.+++.+ ++||||+|||||||+||
T Consensus 16 ~gk~~~~~~~~~~~~~dl~~~Y----------tpgv~--~~c~~i~~~~~~~~~~t~~~n~v-~vvtdg~~vLGlGd~G~ 82 (752)
T PRK07232 16 PGKIEVTPTKPLATQRDLSLAY----------SPGVA--APCLEIAKDPADAYKYTARGNLV-AVISNGTAVLGLGNIGA 82 (752)
T ss_pred CCeEEEEeccccCChhhcceec----------CCchH--HHHHHHHhChhhccccccCCcEE-EEEccchhhcccccccc
Confidence 4899999999999999999999 88888 67779999999999999999987 69999999999999999
Q ss_pred C-CcCcccchheeehhccCCCCCceeceeeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhhccccccc
Q psy14380 300 C-GMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQ 378 (513)
Q Consensus 300 ~-g~~~~vgKlsl~~A~agI~~a~~~p~~~~~~~~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (513)
. |+|||+||+.||+++|||+ ++||++|. + | +||||++|+.+|
T Consensus 83 ~a~~pv~egK~~l~~~~~gid---~~~i~~~~----~----d-------------------~de~v~~v~~~~------- 125 (752)
T PRK07232 83 LASKPVMEGKGVLFKKFAGID---VFDIEVDE----E----D-------------------PDKFIEAVAALE------- 125 (752)
T ss_pred ccCccHHHHHHHHHHhhcCCC---ccccccCC----C----C-------------------HHHHHHHHHHhC-------
Confidence 9 8999999999999999999 66666553 3 4 588999998888
Q ss_pred ccccCCccchhhcccccCceeeeecCCCcccccccCcccccccccccccchhhHHHHHHHHHHHhhcCCceeeeeccCCC
Q psy14380 379 FEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGN 458 (513)
Q Consensus 379 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~ 458 (513)
|+|| .||||||++
T Consensus 126 ----------------------------------------------------------------p~~g---~i~~ED~~~ 138 (752)
T PRK07232 126 ----------------------------------------------------------------PTFG---GINLEDIKA 138 (752)
T ss_pred ----------------------------------------------------------------CCcc---EEeeeecCC
Confidence 5555 599999999
Q ss_pred ccHHHHHHHhhcc--CCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccCC
Q psy14380 459 HNAFRFLDKYRDK--YCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513 (513)
Q Consensus 459 ~~~~~~l~~~~~~--~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag~ 513 (513)
+|||++|+|||++ +|||||||||||+|++|||++|+|++||+++|+||||+|||+
T Consensus 139 p~~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGa 195 (752)
T PRK07232 139 PECFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGA 195 (752)
T ss_pred chHHHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccH
Confidence 9999999999998 699999999999999999999999999999999999999995
No 17
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=9.8e-37 Score=317.38 Aligned_cols=179 Identities=35% Similarity=0.518 Sum_probs=162.7
Q ss_pred CceEEEeeCCCCCCcccCCeeeccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCC
Q psy14380 220 EGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGA 299 (513)
Q Consensus 220 ~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~ 299 (513)
.||++|.+-.|.-..++....| .|||| ..|..+.+.++..+.++++.+.+ +||||||+||||||+||
T Consensus 30 ~gki~~~~~~~~~~~~dl~l~Y----------TPgVa--~~~~~i~~d~~~~~~yt~~~n~v-aVvTDgtaVLGLGniGp 96 (432)
T COG0281 30 PGKILIYPTVPLHTQEDLPLAY----------TPGVA--EACKAISEDPRKAYSYTARGNLV-AVVTDGTAVLGLGNIGP 96 (432)
T ss_pred CCeEEEEEcccccCHhhcCccc----------CCchH--HHHHHHHhCcchhhhcCCCCceE-EEEECCceeeccccccc
Confidence 4899999999999998899999 78887 89999999999999999999988 69999999999999996
Q ss_pred -CCcCcccchheeehhccCCCCCceeceeeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhhccccccc
Q psy14380 300 -CGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQ 378 (513)
Q Consensus 300 -~g~~~~vgKlsl~~A~agI~~a~~~p~~~~~~~~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (513)
.|++||+||++||+++|||+ ++||+||++|+++ +++|++++.++|
T Consensus 97 ~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e------------------------i~~~Vkal~p~F------- 142 (432)
T COG0281 97 LAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE------------------------IIEFVKALEPTF------- 142 (432)
T ss_pred ccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH------------------------HHHHHHHhhhcC-------
Confidence 59999999999999999999 9999999998865 457888888887
Q ss_pred ccccCCccchhhcccccCceeeeecCCCcccccccCcccccccccccccchhhHHHHHHHHHHHhhcCCceeeeeccCCC
Q psy14380 379 FEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGN 458 (513)
Q Consensus 379 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~ 458 (513)
+...++||||..
T Consensus 143 --------------------------------------------------------------------gginLedi~ap~ 154 (432)
T COG0281 143 --------------------------------------------------------------------GGINLEDIDAPR 154 (432)
T ss_pred --------------------------------------------------------------------CCcceeecccch
Confidence 345677777777
Q ss_pred ccHHHHHHHhhccCCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccCC
Q psy14380 459 HNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513 (513)
Q Consensus 459 ~~~~~~l~~~~~~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag~ 513 (513)
-|+.+.+.|||.++|+|||||||||+|++|||++|+|++||+|+|+|++|+|||+
T Consensus 155 cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGA 209 (432)
T COG0281 155 CFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGA 209 (432)
T ss_pred hhHHHHHHhhcCCCCcccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcH
Confidence 7777778888888999999999999999999999999999999999999999995
No 18
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=7.9e-35 Score=288.48 Aligned_cols=128 Identities=48% Similarity=0.779 Sum_probs=107.1
Q ss_pred cchhHHHHHHHHHhhhhhcCcccccceEEEecCC----------------------------------------------
Q psy14380 186 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG---------------------------------------------- 219 (513)
Q Consensus 186 IQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG---------------------------------------------- 219 (513)
|||||+|+|||++||+|++|++|+||||||+|||
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~ 80 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNP 80 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCCh
Confidence 7999999999999999999999999999999999
Q ss_pred ------------------------------------------------------------------------------Cc
Q psy14380 220 ------------------------------------------------------------------------------EG 221 (513)
Q Consensus 220 ------------------------------------------------------------------------------~G 221 (513)
+|
T Consensus 81 ~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t~g 160 (255)
T PF03949_consen 81 HKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWTDG 160 (255)
T ss_dssp HHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTTTS
T ss_pred hhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhCCc
Confidence 69
Q ss_pred eEEEeeCCCCCCcccCCeeeccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCC
Q psy14380 222 RCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACG 301 (513)
Q Consensus 222 kalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g 301 (513)
||||||||||+||+|+||+|+||||||+|||||||||++++++++|||+|+.+||+++ |.++++++ +.-|.+.|+-
T Consensus 161 ~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aL--A~~v~~~~--~~~~~l~P~~ 236 (255)
T PF03949_consen 161 RAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEAL--ADLVSEEE--LAPGRLYPPL 236 (255)
T ss_dssp EEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHH--HHTSSHHH--HHTTBSS-SG
T ss_pred eEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHH--HHhCCccc--CCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999997 88999887 6778888874
Q ss_pred cCcccchheeehhccCCC
Q psy14380 302 MGIPVGKLSLYTALAGIK 319 (513)
Q Consensus 302 ~~~~vgKlsl~~A~agI~ 319 (513)
.. +++++..+|.++.+
T Consensus 237 ~~--ir~vs~~VA~aVa~ 252 (255)
T PF03949_consen 237 FD--IREVSARVAAAVAK 252 (255)
T ss_dssp GG--HHHHHHHHHHHHHH
T ss_pred Cc--HhHHHHHHHHHHHH
Confidence 44 46677777777654
No 19
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=99.98 E-value=4.8e-34 Score=286.03 Aligned_cols=132 Identities=56% Similarity=0.842 Sum_probs=120.0
Q ss_pred cchhHHHHHHHHHhhhhhcCcccccceEEEecCC----------------------------------------------
Q psy14380 186 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG---------------------------------------------- 219 (513)
Q Consensus 186 IQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG---------------------------------------------- 219 (513)
|||||+|+|||+|||+|++|++|+||||||+|||
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~ 80 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTP 80 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchH
Confidence 8999999999999999999999999999999999
Q ss_pred -----------------------------------------------------------------------------Cce
Q psy14380 220 -----------------------------------------------------------------------------EGR 222 (513)
Q Consensus 220 -----------------------------------------------------------------------------~Gk 222 (513)
+||
T Consensus 81 ~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ 160 (279)
T cd05312 81 FKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGR 160 (279)
T ss_pred HHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCC
Confidence 699
Q ss_pred EEEeeCCCCCCcccCCeeeccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCCc
Q psy14380 223 CIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGM 302 (513)
Q Consensus 223 alfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g~ 302 (513)
+|||||||||||+|+||+|+|+||||+|+|||||||++++++++|||+|+.+||+++ |.++++++ |.-|.+.|+-.
T Consensus 161 ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aL--A~~~~~~~--l~~~~l~P~~~ 236 (279)
T cd05312 161 ALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEAL--ASLVTDEE--LARGRLYPPLS 236 (279)
T ss_pred EEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHH--HHhCCccc--cCCCeeeCCCc
Confidence 999999999999999999999999999999999999999999999999999999998 88988876 55666766533
Q ss_pred CcccchheeehhccCCCCCce
Q psy14380 303 GIPVGKLSLYTALAGIKPHQC 323 (513)
Q Consensus 303 ~~~vgKlsl~~A~agI~~a~~ 323 (513)
- +++++..+|.+++..++-
T Consensus 237 ~--~r~vs~~VA~aVa~~A~~ 255 (279)
T cd05312 237 N--IREISAQIAVAVAKYAYE 255 (279)
T ss_pred c--HhHHHHHHHHHHHHHHHH
Confidence 3 367899999998885543
No 20
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=99.97 E-value=3.5e-33 Score=276.63 Aligned_cols=128 Identities=61% Similarity=0.833 Sum_probs=118.0
Q ss_pred cchhHHHHHHHHHhhhhhcCcccccceEEEecCC----------------------------------------------
Q psy14380 186 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG---------------------------------------------- 219 (513)
Q Consensus 186 IQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG---------------------------------------------- 219 (513)
|||||+|+|||+|||+|++|++|+||||||+|||
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~ 80 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCP 80 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCH
Confidence 7999999999999999999999999999999999
Q ss_pred ------------------------------------------------------------------------------Cc
Q psy14380 220 ------------------------------------------------------------------------------EG 221 (513)
Q Consensus 220 ------------------------------------------------------------------------------~G 221 (513)
+|
T Consensus 81 ~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G 160 (254)
T cd00762 81 NEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEG 160 (254)
T ss_pred HHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCC
Confidence 69
Q ss_pred eEEEeeCCCCCCcccCCeeeccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCC
Q psy14380 222 RCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACG 301 (513)
Q Consensus 222 kalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g 301 (513)
|+||||||||+|++++|++|+|+||||+|+|||||||++++++++|||+|+++||+++ |.++++++ +.-|.+.|+-
T Consensus 161 ~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aL--A~~v~~~~--l~~~~i~P~~ 236 (254)
T cd00762 161 RAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAI--ASSVTEES--LKPGRLYPPL 236 (254)
T ss_pred CEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHH--HhhCChhc--CCCCceeCCc
Confidence 9999999999999999999999999999999999999999999999999999999998 88998876 6777887764
Q ss_pred cCcccchheeehhccCCC
Q psy14380 302 MGIPVGKLSLYTALAGIK 319 (513)
Q Consensus 302 ~~~~vgKlsl~~A~agI~ 319 (513)
.- +++++..+|.++++
T Consensus 237 ~~--ir~vs~~VA~aVa~ 252 (254)
T cd00762 237 FD--IQEVSLNIAVAVAK 252 (254)
T ss_pred ch--hhhHHHHHHHHHHH
Confidence 43 47788888877665
No 21
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=99.85 E-value=3.7e-22 Score=194.00 Aligned_cols=127 Identities=31% Similarity=0.438 Sum_probs=105.1
Q ss_pred cchhHHHHHHHHHhhhhhcCcccccceEEEecCC----------------------------------------------
Q psy14380 186 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG---------------------------------------------- 219 (513)
Q Consensus 186 IQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG---------------------------------------------- 219 (513)
.||||+|++||+++|++..+.+++++|++|+|||
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~ 80 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAK 80 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHH
Confidence 4999999999999999999999999999999999
Q ss_pred ---------------------------------------CceEEEeeCCCCCC------------cccCCeeeccCCCcc
Q psy14380 220 ---------------------------------------EGRCIFASGSPFPP------------VKMETKTYYPGQGNN 248 (513)
Q Consensus 220 ---------------------------------------~GkalfAsGSPfp~------------V~~~Gk~y~pgQ~NN 248 (513)
++.++|..-+|.++ +..+|+.+.|+||||
T Consensus 81 ~~~~~~~~~~l~~~l~~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~lsnP~~e~~~~~A~~~ga~i~a~G~~~~~~Q~nn 160 (226)
T cd05311 81 ETNPEKTGGTLKEALKGADVFIGVSRPGVVKKEMIKKMAKDPIVFALANPVPEIWPEEAKEAGADIVATGRSDFPNQVNN 160 (226)
T ss_pred HhccCcccCCHHHHHhcCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeCCCCCcCCHHHHHHcCCcEEEeCCCCCccccce
Confidence 12233333333322 122678899999999
Q ss_pred eeeccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCCcCcccchheeehhccCCC
Q psy14380 249 AYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIK 319 (513)
Q Consensus 249 ~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g~~~~vgKlsl~~A~agI~ 319 (513)
+|||||||||++++++++|||+|+.+||+++ |.++++.+ +.-|-+.|+-.. ++++..+|.++++
T Consensus 161 ~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~l--a~~~~~~~--~~~~~~~P~~~~---~~~~~~va~~v~~ 224 (226)
T cd05311 161 VLGFPGIFRGALDVRATKITEEMKLAAAEAI--ADLAEEEV--LGEEYIIPTPFD---PRVVPRVATAVAK 224 (226)
T ss_pred eeecchhhHHHHHcCCcCCCHHHHHHHHHHH--HhhCCccc--cCCCcccCCCCc---hhHHHHHHHHHHH
Confidence 9999999999999999999999999999998 88888876 677888887444 6788888887765
No 22
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=99.66 E-value=2.9e-17 Score=156.52 Aligned_cols=146 Identities=39% Similarity=0.578 Sum_probs=102.6
Q ss_pred hccchhhHHHHHhhCcccccceeeccchhhhhhhhhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhcccc-ccC
Q psy14380 10 MDRNERLFFRLLSENVEELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEE-LMP 88 (513)
Q Consensus 10 ~drNe~LFYrLL~~hleEllPIVYTPTVGeACQ~ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~-i~~ 88 (513)
|++||+|||++|++|++|+||||||||||+|||+||++|+.|+ ++|++++|+++ +.++++||++. +..
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~---------Gly~s~~d~g~--i~~~l~n~~~~~v~v 69 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPR---------GLYLSISDRGH--IEEILRNWPERDVRV 69 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHH---------SCCCEGGGETC--HHHHHTTSS-SS--E
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhcccc---------ceEEecCChHH--HHHHHHhhhccCceE
Confidence 7899999999999999999999999999999999999998653 46789999874 88889999966 558
Q ss_pred EEEcCch---h---hhhhhcccc------------ccCCCeeEEeecCCcchHHHhhccCCCccccccccchhh------
Q psy14380 89 IVYTPTV---G---LACQKFGLI------------FRRPRGLFITIHDKGHCFDLLKNWTITNEVIRDKIKMTK------ 144 (513)
Q Consensus 89 IVVTDG~---G---ig~~g~gi~------------~~p~~gL~I~I~d~g~~~~vl~d~ttnne~L~dplY~g~------ 144 (513)
||||||. | +|++||+++ +.|.+.|||++ |+| |+|+++|.||+|+|.
T Consensus 70 ~VVTDG~rILGlGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~L-DvG---------Tnn~~ll~Dp~Y~G~r~~R~~ 139 (182)
T PF00390_consen 70 IVVTDGERILGLGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCL-DVG---------TNNEELLNDPLYLGLRHPRVR 139 (182)
T ss_dssp EEEE-SSSBTTTBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEE-ESB---------BS-HHHHH-TT--S-SSB---
T ss_pred EEEeCchhhccccCcCcceEEeeehhhhhHHhhcCcCcccccCeEe-ecC---------cchhhhccCcchhccccCCCC
Confidence 9999983 3 344444443 24555555555 243 455556678999993
Q ss_pred ------hHHHHHHHHH-hh-c---cccccCCccchHHHHHHhc
Q psy14380 145 ------VTKKIQEQRL-QW-Y---GHFEDFGNHNAFRFLDKYR 176 (513)
Q Consensus 145 ------~~~~v~~a~~-~~-~---~qFEDF~~~NAfrlLerYR 176 (513)
+.+|+.+++. +| + .|||||+++|||++|+|||
T Consensus 140 g~~y~~fvdefv~av~~~~gp~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 140 GEEYDEFVDEFVEAVKRRFGPNALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp THHHHHHHHHHHHHHHHHHGCTSEEEE-S--CCHHHHHHHHHT
T ss_pred hhhhhhCHHHHHHHHHHHhCCCeEEEEecCCChhHHHHHHhcC
Confidence 3355555544 44 2 2999999999999999998
No 23
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=89.01 E-value=0.63 Score=38.79 Aligned_cols=33 Identities=45% Similarity=0.487 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHHHHHhCCcCCcceEEEeccCC
Q psy14380 481 GTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513 (513)
Q Consensus 481 gt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag~ 513 (513)
+|+.++++.+....+..++++++++++++|+|.
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~ 33 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGE 33 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCH
Confidence 689999999999999999999999999999983
No 24
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=87.66 E-value=0.68 Score=38.59 Aligned_cols=32 Identities=44% Similarity=0.465 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHhhhhhcCcccccceEEEecCC
Q psy14380 188 GTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219 (513)
Q Consensus 188 GTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG 219 (513)
+||+++++.+..+.+..+.+++.++++++|+|
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G 32 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAG 32 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCC
Confidence 69999999999999999999999999999999
No 25
>PRK14982 acyl-ACP reductase; Provisional
Probab=71.65 E-value=5.9 Score=42.07 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=37.3
Q ss_pred eeeccCCCccHHHHHHHhhccCCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccC
Q psy14380 451 IQFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 451 ~~~ed~~~~~~~~~l~~~~~~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag 512 (513)
|.+|||.+-|++ ||+++..++.-+.+..|..++++++++.||+
T Consensus 122 ie~~~~TtGNs~-------------------T~~ll~~~V~la~~~lg~~l~~k~VLVtGAt 164 (340)
T PRK14982 122 LEWERFTTGNTH-------------------TAYVICRQVEQNAPRLGIDLSKATVAVVGAT 164 (340)
T ss_pred eccccccCCchh-------------------HHHHHHHHHHHhHHHhccCcCCCEEEEEccC
Confidence 334469999998 5888889999999999999999999999993
No 26
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=63.88 E-value=12 Score=36.55 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=12.0
Q ss_pred ccccceEEEecCC
Q psy14380 207 KISECRFLFLGAG 219 (513)
Q Consensus 207 ~l~d~rivf~GAG 219 (513)
+|++++++|+|+|
T Consensus 7 ~l~~k~vLVIGgG 19 (202)
T PRK06718 7 DLSNKRVVIVGGG 19 (202)
T ss_pred EcCCCEEEEECCC
Confidence 5789999999999
No 27
>PRK14982 acyl-ACP reductase; Provisional
Probab=62.75 E-value=8.7 Score=40.80 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=37.6
Q ss_pred ccccCCccchHHHHHHhcccCcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC
Q psy14380 159 HFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219 (513)
Q Consensus 159 qFEDF~~~NAfrlLerYR~~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG 219 (513)
.||||.+.|+. |+++..+++--|.+..+..+++.++++.||+
T Consensus 123 e~~~~TtGNs~-------------------T~~ll~~~V~la~~~lg~~l~~k~VLVtGAt 164 (340)
T PRK14982 123 EWERFTTGNTH-------------------TAYVICRQVEQNAPRLGIDLSKATVAVVGAT 164 (340)
T ss_pred ccccccCCchh-------------------HHHHHHHHHHHhHHHhccCcCCCEEEEEccC
Confidence 55679999998 8899999999999999999999999999994
No 28
>PRK14031 glutamate dehydrogenase; Provisional
Probab=53.81 E-value=56 Score=36.17 Aligned_cols=87 Identities=18% Similarity=0.173 Sum_probs=65.1
Q ss_pred ccchhhHHHHHHHHHHHhhcCCceeeeeccCCCccH--HHHHHHhhccC----Cee----------ccCCccHHHHHHHH
Q psy14380 426 TGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNA--FRFLDKYRDKY----CTF----------NDDIQGTASVAVAG 489 (513)
Q Consensus 426 ~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~--~~~l~~~~~~~----~~~----------~dd~qgt~~~~~~~ 489 (513)
.-+|.-.|...||..+.+..||++-|-=+|.+..-. --+.|.|+... .++ .+-...||-=++.+
T Consensus 135 s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~ 214 (444)
T PRK14031 135 SNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIYF 214 (444)
T ss_pred CHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHHH
Confidence 345667888899999999999999999999976321 22566675432 222 22334577777778
Q ss_pred HHHHHHHhCCcCCcceEEEeccC
Q psy14380 490 LMAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~gag 512 (513)
+-.+++..|.++++.|++|-|.|
T Consensus 215 ~~~~~~~~g~~l~g~rVaVQGfG 237 (444)
T PRK14031 215 LMEMLKTKGTDLKGKVCLVSGSG 237 (444)
T ss_pred HHHHHHhcCCCcCCCEEEEECCC
Confidence 88888888999999999999998
No 29
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=51.36 E-value=18 Score=34.05 Aligned_cols=31 Identities=32% Similarity=0.392 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhhhhhcCcccccceEEEecC-C
Q psy14380 189 TASVAVAGLMAGRRVTGKKISECRFLFLGA-G 219 (513)
Q Consensus 189 TgAVaLAGlLaAlr~tg~~l~d~rivf~GA-G 219 (513)
|++.+++.+..+++..|.++++.+++++|+ |
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG 38 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTG 38 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCC
Confidence 778888888888888889999999999997 7
No 30
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=48.88 E-value=26 Score=36.10 Aligned_cols=105 Identities=20% Similarity=0.282 Sum_probs=59.3
Q ss_pred eeecCCCccccccCcccccccccC-------CChhhHHHHHHHHHHHHHHhhcccccccccccCCccchhhcccccCcee
Q psy14380 327 TIDVGTNNEKLLKDPLYVGLRQKR-------TTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYC 399 (513)
Q Consensus 327 ~~~~~~~~~~~~~d~~y~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 399 (513)
.||++...+.+++-|-|..+|..- .+-++-.+|+++.++.+...|. .++.
T Consensus 79 eid~pGH~~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~-----------------------s~~~ 135 (301)
T cd06565 79 LIQTLGHLEFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHP-----------------------SKYI 135 (301)
T ss_pred cCCCHHHHHHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCC-----------------------CCeE
Confidence 355555555555555555544321 2334556688888888887772 3333
Q ss_pred eeecCCCcccccccCcccccccccccccchhhHHHHHHHHHHHhhcCCceeeeeccCCCc
Q psy14380 400 TFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNH 459 (513)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~ 459 (513)
-+.-|-+.+-. ..+. .-...++..++.|.+|+.+..+.|++. |. +.+-|+|+-..
T Consensus 136 HIG~DE~~~~g--~~~~-~~~~~~~~~~~l~~~~~~~v~~~v~~~-g~-~~~~W~D~~~~ 190 (301)
T cd06565 136 HIGMDEAYDLG--RGRS-LRKHGNLGRGELYLEHLKKVLKIIKKR-GP-KPMMWDDMLRK 190 (301)
T ss_pred EECCCcccccC--CCHH-HHHhcCCCHHHHHHHHHHHHHHHHHHc-CC-EEEEEhHHhcC
Confidence 33333333210 0000 000034567788999999988888755 55 67889997544
No 31
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=48.38 E-value=58 Score=35.79 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=30.8
Q ss_pred cCCeec----------cCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccCC
Q psy14380 471 KYCTFN----------DDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513 (513)
Q Consensus 471 ~~~~~~----------dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag~ 513 (513)
.+|+|| |-..||+--++-|++ +.++..+++.+++|+|+|.
T Consensus 173 ~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~---rat~~~l~Gk~VlViG~G~ 222 (425)
T PRK05476 173 KFPAINVNDSVTKSKFDNRYGTGESLLDGIK---RATNVLIAGKVVVVAGYGD 222 (425)
T ss_pred CCCEEecCCcccCccccccHHHHhhhHHHHH---HhccCCCCCCEEEEECCCH
Confidence 489998 556788877666665 4457778999999999983
No 32
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=46.41 E-value=1.4e+02 Score=29.21 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=20.1
Q ss_pred ccccceEEEecCC-------------CceEEEeeCCCCCC
Q psy14380 207 KISECRFLFLGAG-------------EGRCIFASGSPFPP 233 (513)
Q Consensus 207 ~l~d~rivf~GAG-------------~GkalfAsGSPfp~ 233 (513)
+|++++++|+|+| ..++.+.+-.+-+.
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~ 45 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESE 45 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHH
Confidence 4788999999999 45777776655433
No 33
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=39.38 E-value=37 Score=31.80 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=35.1
Q ss_pred ceeceeeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhhcccccccc
Q psy14380 322 QCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQF 379 (513)
Q Consensus 322 ~~~p~~~~~~~~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (513)
..||+.||+- ++ .....+.+...+.+.+|++.+.+.+|-+++|+.
T Consensus 83 ~~~~~~lD~E--------~~-----~~~~~~~~~~~~~~~~f~~~~~~~~G~~~~iY~ 127 (181)
T PF01183_consen 83 GDLPPALDVE--------DD-----KSNNPSKSDNTAWVKAFLDEVEKAAGYKPGIYT 127 (181)
T ss_dssp SCS-EEEEE---------S------GGCCSSHHHHHHHHHHHHHHHHHHCTSEEEEEE
T ss_pred CcceEEEecc--------cc-----ccCCCCHHHHHHHHHHHHHHHHHHhCCceeEee
Confidence 3788999994 22 455677888889999999999999999998875
No 34
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=38.34 E-value=35 Score=35.19 Aligned_cols=50 Identities=22% Similarity=0.403 Sum_probs=37.0
Q ss_pred ccHHHHHHHhhccCCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccCC
Q psy14380 459 HNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513 (513)
Q Consensus 459 ~~~~~~l~~~~~~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag~ 513 (513)
++|+++=++-|.+.-.. .+..||+.+++-.+....|+ +.+.+++|+|+|+
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~ 188 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGE 188 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHH
Confidence 57888888888776544 34466666667667766665 8899999999984
No 35
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=35.53 E-value=31 Score=37.80 Aligned_cols=50 Identities=24% Similarity=0.423 Sum_probs=36.1
Q ss_pred ccHHHHHHHhhccCCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccCC
Q psy14380 459 HNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513 (513)
Q Consensus 459 ~~~~~~l~~~~~~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag~ 513 (513)
+.||..=.|.|.+--. -.|-.||.-|++--|.+..|. |++.++||+|||+
T Consensus 139 qkAi~~gKrvRseT~I----~~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGe 188 (414)
T COG0373 139 QKAISVGKRVRSETGI----GKGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGE 188 (414)
T ss_pred HHHHHHHHHhhcccCC----CCCccchHHHHHHHHHHHhcc-cccCeEEEEcccH
Confidence 4566666777765311 145567777777778888876 9999999999995
No 36
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=32.74 E-value=68 Score=32.42 Aligned_cols=59 Identities=31% Similarity=0.334 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHhhcCCceeeeeccCCCccHHHHHHHhhccCCeeccCCccHHHHHHHHHHHHHHH-hCCcCCcceEEEe
Q psy14380 431 DELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRV-TGKKISECRFLFL 509 (513)
Q Consensus 431 ~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~~~~l~~~~~~~~~~~dd~qgt~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 509 (513)
.+++|+.-+..+..=--||++ ++| .+.+-+|-|..| ++++++- .+..+++.+++++
T Consensus 73 ~~~~d~~~~~A~~igavNtv~-~~~--------------g~l~G~NTD~~G--------~~~~l~~~~~~~~~~k~vlVl 129 (278)
T PRK00258 73 FALADELSERARLIGAVNTLV-LED--------------GRLIGDNTDGIG--------FVRALEERLGVDLKGKRILIL 129 (278)
T ss_pred HHHhhcCCHHHHHhCCceEEE-eeC--------------CEEEEEcccHHH--------HHHHHHhccCCCCCCCEEEEE
Confidence 456666555555555557777 544 356778888644 5555553 5668899999999
Q ss_pred ccC
Q psy14380 510 GAG 512 (513)
Q Consensus 510 gag 512 (513)
|||
T Consensus 130 GaG 132 (278)
T PRK00258 130 GAG 132 (278)
T ss_pred cCc
Confidence 998
No 37
>PRK10637 cysG siroheme synthase; Provisional
Probab=31.03 E-value=7.1e+02 Score=27.28 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=40.7
Q ss_pred ccccceEEEecCC-------------CceEEEeeCCCCCCc---------ccCCeeeccCCCcceeeccccchheecccc
Q psy14380 207 KISECRFLFLGAG-------------EGRCIFASGSPFPPV---------KMETKTYYPGQGNNAYIFPGVALGVIATGI 264 (513)
Q Consensus 207 ~l~d~rivf~GAG-------------~GkalfAsGSPfp~V---------~~~Gk~y~pgQ~NN~yiFPGIgLGai~s~a 264 (513)
+|++.++||+|+| ..++.+.|-..-+++ ++.-+.|.++-..++ .|=..++.-
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~------~lv~~at~d 82 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTC------WLAIAATDD 82 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCC------EEEEECCCC
Confidence 5789999999999 457766653322222 122234544443333 222334445
Q ss_pred ccccHHHHHhhcCCCceeeeecCC
Q psy14380 265 HHITEDIFLIAAEPDVRAIVVTDG 288 (513)
Q Consensus 265 ~~Itd~m~~aAA~~l~~A~vVTdg 288 (513)
+.+...+...|-+.....+++++-
T Consensus 83 ~~~n~~i~~~a~~~~~lvN~~d~~ 106 (457)
T PRK10637 83 DAVNQRVSEAAEARRIFCNVVDAP 106 (457)
T ss_pred HHHhHHHHHHHHHcCcEEEECCCc
Confidence 566666666653333334555543
No 38
>PF13963 Transpos_assoc: Transposase-associated domain
Probab=30.25 E-value=75 Score=26.59 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=30.8
Q ss_pred cCcccccccccCCChhhHHHHHHHHHHHHHHhhcccccccccc
Q psy14380 339 KDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFED 381 (513)
Q Consensus 339 ~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (513)
++-|| |++.+...-.+|.+=+++||..+.+....+.-|.-||
T Consensus 1 RsWMy-~~~~~~r~s~ey~~Gv~~Fi~~A~~~~~~~~~i~CPC 42 (77)
T PF13963_consen 1 RSWMY-RWDNKDRFSPEYIEGVEEFIDFAFSNPSNDNMIRCPC 42 (77)
T ss_pred CcCcc-CCCCCCCCCHHHHHHHHHHHHHHHhcccCCCceECCc
Confidence 35688 8876666777899999999999998875444444444
No 39
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=28.74 E-value=86 Score=30.17 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=33.9
Q ss_pred eeceeeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhhcccccccc
Q psy14380 323 CLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQF 379 (513)
Q Consensus 323 ~~p~~~~~~~~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (513)
.||+.||+-.+.. .+.. ...+.+...+.+.+|++.++++.|.+.+|+.
T Consensus 88 ~lp~~lD~E~~~~--------~~~~-~~~~~~~~~~~~~~f~~~v~~~~G~~~~iY~ 135 (199)
T cd06412 88 TLPGVLDLEYNPY--------GATC-YGLSPAQMVSWIKDFSDTYKARTGRDPVIYT 135 (199)
T ss_pred CCCeEEEEecCCC--------CCcc-CCCCHHHHHHHHHHHHHHHHHHHCCCcEEEe
Confidence 6889999953211 1111 1234556778889999999999999999986
No 40
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=27.09 E-value=91 Score=29.75 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=33.5
Q ss_pred eeceeeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhhcccccccc
Q psy14380 323 CLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQF 379 (513)
Q Consensus 323 ~~p~~~~~~~~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (513)
.+|+.+|+-.+ +..+...+.++..+.+.+|++.++++.|.+++|+.
T Consensus 86 ~~~~~lD~E~~-----------~~~~~~~~~~~~~~~~~~f~~~v~~~~G~~~~iY~ 131 (191)
T cd06413 86 ALPPVVDVEWN-----------GNSATCPSAEEVLAELQVFLDALEAHYGKRPIIYT 131 (191)
T ss_pred cCCeEEEEEec-----------CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 67888998421 11122245566778889999999999999999986
No 41
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=26.86 E-value=67 Score=33.11 Aligned_cols=59 Identities=27% Similarity=0.363 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHhhcCCceeeeeccCCCccHHHHHHHhhccCCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEec
Q psy14380 431 DELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLG 510 (513)
Q Consensus 431 ~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~~~~l~~~~~~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~g 510 (513)
.+++||.-+..+..=--||++. +| .+..=+|-|.. |++.+++-.|..+++.++|++|
T Consensus 75 ~~~~D~l~~~A~~iGAVNTv~~-~~--------------g~l~G~NTD~~--------Gf~~~l~~~~~~~~~k~vlvlG 131 (288)
T PRK12749 75 CEYVDELTPAAKLVGAINTIVN-DD--------------GYLRGYNTDGT--------GHIRAIKESGFDIKGKTMVLLG 131 (288)
T ss_pred HHHhccCCHHHHHhCceeEEEc-cC--------------CEEEEEecCHH--------HHHHHHHhcCCCcCCCEEEEEC
Confidence 4555655555555444577652 33 24567888864 5666667677888999999999
Q ss_pred cC
Q psy14380 511 AG 512 (513)
Q Consensus 511 ag 512 (513)
||
T Consensus 132 aG 133 (288)
T PRK12749 132 AG 133 (288)
T ss_pred Cc
Confidence 98
No 42
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=26.30 E-value=81 Score=34.06 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=42.0
Q ss_pred ccccCcccccccccccccchhhHHHHHHHHHHHhhcCCceeeeeccCCCccHHHHHHHhhccCCeeccCCccHHHHHHH-
Q psy14380 410 KLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVA- 488 (513)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~~~~l~~~~~~~~~~~dd~qgt~~~~~~- 488 (513)
+||+||||- ..-.+.||.| ||+.+-..++|++|. .=.+|++-|-.-..|
T Consensus 225 ~ll~~pff~-~~pPKStgrE-------------------------~F~~~~~~~~l~~~~----~s~~D~~aTlt~~TA~ 274 (365)
T PRK09585 225 RLLAHPYFA-LPPPKSTGRE-------------------------LFNLAWLERQLAGFG----LSPEDVQATLTELTAA 274 (365)
T ss_pred HHhcCcccc-CCCCCccChh-------------------------hcCHHHHHHHHHhCC----CCHHHHHHHHHHHHHH
Confidence 456788886 4445566644 455455555666552 345788887554433
Q ss_pred HHHHHHHHhCCcCCcceEEEeccCC
Q psy14380 489 GLMAGRRVTGKKISECRFLFLGAGE 513 (513)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~gag~ 513 (513)
.+..+.+....+ ..++++.|.|+
T Consensus 275 sI~~~~~~~~~~--~~~vlv~GGGa 297 (365)
T PRK09585 275 SIARAVRRLPPG--PDELLVCGGGA 297 (365)
T ss_pred HHHHHHHhccCC--CCEEEEECCCc
Confidence 444455443322 24889999884
No 43
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=25.98 E-value=91 Score=32.14 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=27.1
Q ss_pred cCcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC
Q psy14380 178 KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219 (513)
Q Consensus 178 ~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG 219 (513)
+..=+|-|. .|++.+++..+.++++.+++++|||
T Consensus 100 ~l~G~NTD~--------~Gf~~~l~~~~~~~~~k~vlvlGaG 133 (288)
T PRK12749 100 YLRGYNTDG--------TGHIRAIKESGFDIKGKTMVLLGAG 133 (288)
T ss_pred EEEEEecCH--------HHHHHHHHhcCCCcCCCEEEEECCc
Confidence 355678887 4566777777788899999999999
No 44
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=25.75 E-value=1.1e+02 Score=33.79 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=38.7
Q ss_pred cCcccc----------cCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC-------------CceEEEeeCCCCC
Q psy14380 178 KYCTFN----------DDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG-------------EGRCIFASGSPFP 232 (513)
Q Consensus 178 ~~~~FN----------DDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG-------------~GkalfAsGSPfp 232 (513)
.+|+|| |-.-|||--++-|+.. .++..+.+.+++|+|+| .-++++..-+|..
T Consensus 173 ~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~r 247 (425)
T PRK05476 173 KFPAINVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPIC 247 (425)
T ss_pred CCCEEecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchh
Confidence 588888 6678898877777764 44667899999999999 3466666656543
No 45
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=25.38 E-value=63 Score=28.75 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.5
Q ss_pred HHHHhhhhhcCcccccceEEEecCC
Q psy14380 195 AGLMAGRRVTGKKISECRFLFLGAG 219 (513)
Q Consensus 195 AGlLaAlr~tg~~l~d~rivf~GAG 219 (513)
.|+..|++..+.++++.+++|.|+|
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G 28 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAG 28 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCc
Confidence 5888999988888999999999999
No 46
>PRK09414 glutamate dehydrogenase; Provisional
Probab=24.92 E-value=3.4e+02 Score=30.19 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=63.7
Q ss_pred cccchhhHHHHHHHHHHHhhcCCceeeeeccCCCccHH---HHHHHhhccCC----e-------e---ccCCccHHHHHH
Q psy14380 425 TTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF---RFLDKYRDKYC----T-------F---NDDIQGTASVAV 487 (513)
Q Consensus 425 ~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~~---~~l~~~~~~~~----~-------~---~dd~qgt~~~~~ 487 (513)
.+..|-..|...|+.++.+.+||..=|-=+|.+. |+- -+.+.|+.-.. + + .+-...||-=++
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt-~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~ 216 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLV 216 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCC-CHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHH
Confidence 3445778899999999999999999999999984 322 24567664321 1 1 122335666667
Q ss_pred HHHHHHHHHhCCcCCcceEEEeccC
Q psy14380 488 AGLMAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~gag 512 (513)
.++..+++..|.+++..|++|.|.|
T Consensus 217 ~~~~~~~~~~~~~l~g~rVaIqGfG 241 (445)
T PRK09414 217 YFAEEMLKARGDSFEGKRVVVSGSG 241 (445)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCC
Confidence 7778888888999999999999988
No 47
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=24.66 E-value=88 Score=31.62 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=26.0
Q ss_pred ccCcccccCcchhHHHHHHHHHhhhhh-cCcccccceEEEecCC
Q psy14380 177 DKYCTFNDDIQGTASVAVAGLMAGRRV-TGKKISECRFLFLGAG 219 (513)
Q Consensus 177 ~~~~~FNDDIQGTgAVaLAGlLaAlr~-tg~~l~d~rivf~GAG 219 (513)
++..-+|-|.. |++++++. .+..+++.+++++|||
T Consensus 97 g~l~G~NTD~~--------G~~~~l~~~~~~~~~~k~vlVlGaG 132 (278)
T PRK00258 97 GRLIGDNTDGI--------GFVRALEERLGVDLKGKRILILGAG 132 (278)
T ss_pred CEEEEEcccHH--------HHHHHHHhccCCCCCCCEEEEEcCc
Confidence 35667888874 45666653 4667899999999999
No 48
>COG0070 GltB Glutamate synthase domain 3 [Amino acid transport and metabolism]
Probab=24.50 E-value=4.2e+02 Score=28.24 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=26.1
Q ss_pred cCcchhHHHHHHHHHh----------hhhhcCcccccceEEEecC
Q psy14380 184 DDIQGTASVAVAGLMA----------GRRVTGKKISECRFLFLGA 218 (513)
Q Consensus 184 DDIQGTgAVaLAGlLa----------Alr~tg~~l~d~rivf~GA 218 (513)
=+++|++.=.++++++ |..-.|+.+++=+|||.|-
T Consensus 85 i~~~GsaGqsfGaf~~~G~~l~l~GdAnDyvGkgmsgG~IVV~~~ 129 (301)
T COG0070 85 INFNGSAGQSFGAFNAKGPTLELNGDANDYVGKGMSGGKIVVRGP 129 (301)
T ss_pred EEEEeccchhhhhhhcCCCEEEEEeccCCcccCCCCCcEEEEECC
Confidence 3789999999999998 3344667777777777764
No 49
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=23.92 E-value=1.1e+02 Score=28.44 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=25.1
Q ss_pred HHHHHHHhhhhhcCcccccceEEEecCC
Q psy14380 192 VAVAGLMAGRRVTGKKISECRFLFLGAG 219 (513)
Q Consensus 192 VaLAGlLaAlr~tg~~l~d~rivf~GAG 219 (513)
.+..|++.-++..|.+++.++++++|.+
T Consensus 10 ~t~~a~~~ll~~~~~~~~gk~v~VvGrs 37 (140)
T cd05212 10 PVAKAVKELLNKEGVRLDGKKVLVVGRS 37 (140)
T ss_pred cHHHHHHHHHHHcCCCCCCCEEEEECCC
Confidence 5678888888999999999999999998
No 50
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=23.75 E-value=1.3e+02 Score=30.76 Aligned_cols=62 Identities=24% Similarity=0.261 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHhhcCCceeeeeccCCCccHHHHHHHhhccCCeeccCCccHHHHHHHHHHHHHHHhCC--cCCcceEE
Q psy14380 430 YDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGK--KISECRFL 507 (513)
Q Consensus 430 y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~~~~l~~~~~~~~~~~dd~qgt~~~~~~~~~~~~~~~~~--~~~~~~~~ 507 (513)
=.+++||.-+..+..=--||++..+| .+.+=+|-|..| ++.+++-.+. .+++++++
T Consensus 72 ~~~~~d~~~~~A~~iGAVNTv~~~~~--------------g~l~G~NTD~~G--------~~~~l~~~~~~~~~~~k~vl 129 (282)
T TIGR01809 72 ILRFADEHTDRASLIGSVNTLLRTQN--------------GIWKGDNTDWDG--------IAGALANIGKFEPLAGFRGL 129 (282)
T ss_pred HHHHhhcCCHHHHHhCceeEEEEcCC--------------CcEEEecCCHHH--------HHHHHHhhCCccccCCceEE
Confidence 34566665555555444477664343 346778888654 5555555553 57899999
Q ss_pred EeccCC
Q psy14380 508 FLGAGE 513 (513)
Q Consensus 508 ~~gag~ 513 (513)
++|||.
T Consensus 130 vlGaGG 135 (282)
T TIGR01809 130 VIGAGG 135 (282)
T ss_pred EEcCcH
Confidence 999993
No 51
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=23.67 E-value=61 Score=34.64 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=29.6
Q ss_pred ccHHHHHHHhhccCCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccCC
Q psy14380 459 HNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513 (513)
Q Consensus 459 ~~~~~~l~~~~~~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag~ 513 (513)
+.||+.=.|-|.+.-. -.|..||+-++...+.+ . .+++++++|++|||+
T Consensus 136 ~~A~~~aKrVRteT~I----~~~~vSv~s~av~~~~~-~-~~l~~k~vLvIGaGe 184 (338)
T PRK00676 136 QKALKEGKVFRSKGGA----PYAEVTIESVVQQELRR-R-QKSKKASLLFIGYSE 184 (338)
T ss_pred HHHHHHHHHHhhhcCC----CCCCcCHHHHHHHHHHH-h-CCccCCEEEEEcccH
Confidence 4566666677665321 02333444444444433 3 569999999999995
No 52
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=23.66 E-value=69 Score=34.23 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=20.4
Q ss_pred cccccceEEEecCC------------C--ceEEEeeCCC
Q psy14380 206 KKISECRFLFLGAG------------E--GRCIFASGSP 230 (513)
Q Consensus 206 ~~l~d~rivf~GAG------------~--GkalfAsGSP 230 (513)
.+|++.+++++||| . .++.+++.+.
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~ 208 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ 208 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 56999999999999 3 3688877765
No 53
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=23.66 E-value=1.1e+02 Score=29.83 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=33.1
Q ss_pred eeceeeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhhcccccccc
Q psy14380 323 CLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQF 379 (513)
Q Consensus 323 ~~p~~~~~~~~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (513)
.||+.||+-.+ |. ...+.++..+.+.+|++.|++++|.+++|+.
T Consensus 91 ~lp~vlD~E~~-----------~~--~~~~~~~~~~~~~~fl~~ve~~~g~~piIYt 134 (190)
T cd06419 91 NLPIAIYVSYY-----------GD--YNPDTKKSTQKLGLLVQLLEQHYNQSVIIRG 134 (190)
T ss_pred CCCeEEEEecC-----------CC--CCCCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 68999998422 11 1145567777778999999999999999986
No 54
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=22.16 E-value=93 Score=31.99 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=28.1
Q ss_pred CccHHHHHHHHHHHHHHHhCCcCCcceEEEeccCC
Q psy14380 479 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513 (513)
Q Consensus 479 ~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag~ 513 (513)
+..+.+++=.+++.+++.++..+.+++++|+|+|.
T Consensus 127 ~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~ 161 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGR 161 (287)
T ss_pred EEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChH
Confidence 34556666667777888888899999999999983
No 55
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=21.33 E-value=2.6e+02 Score=30.71 Aligned_cols=80 Identities=25% Similarity=0.364 Sum_probs=0.0
Q ss_pred ccccccchhhHHHHHHHHHHHhhcCCceeeeeccCCCccHHHHHHHhhc----------------------------cCC
Q psy14380 422 QKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRD----------------------------KYC 473 (513)
Q Consensus 422 ~~~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~~~~l~~~~~----------------------------~~~ 473 (513)
.|..+-|||-+.+++.++ ..|+.+| |-|..-...+-++|++ ++|
T Consensus 87 ~~~~~~~ey~~~~~~~l~-----~~p~~ii---DdGgdl~~~~~~~~~~~~~~~~G~~EeTttGv~rl~~~~~~~~L~~P 158 (406)
T TIGR00936 87 WRGETNEEYYWAIEQVLD-----HEPNIII---DDGADLIFLLHTERPELLEKIIGGSEETTTGVIRLRAMEAEGVLKFP 158 (406)
T ss_pred ecCCCHHHHHHHHHHHhc-----CCCCEEE---ecccHHHHHHHHhhhhhhhccEEEeecchHHHHHHHHHHHcCCCCCc
Q ss_pred eec----------cCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccC
Q psy14380 474 TFN----------DDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 474 ~~~----------dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag 512 (513)
+++ |..-||+--++-+++ |.++..++.++++|+|+|
T Consensus 159 vi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G 204 (406)
T TIGR00936 159 AINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYG 204 (406)
T ss_pred EEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCC
No 56
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=21.04 E-value=1.4e+02 Score=32.81 Aligned_cols=74 Identities=23% Similarity=0.330 Sum_probs=43.6
Q ss_pred ccCCChhhHHHHHHHHHHHHHHhhcccccccccccCCccchhhcccccCceeeeecCCCcccccccCccccccccccccc
Q psy14380 348 QKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTG 427 (513)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (513)
..-..-+.+.++|.+|++.+..|||.. -+.+| .+-+-|| .++ ++-+ +..+-
T Consensus 126 ~pp~~~~~W~~lv~~~~~h~~~RYG~~---------------ev~~W--~fEiWNE-----Pd~-~~f~------~~~~~ 176 (486)
T PF01229_consen 126 SPPKDYEKWRDLVRAFARHYIDRYGIE---------------EVSTW--YFEIWNE-----PDL-KDFW------WDGTP 176 (486)
T ss_dssp S-BS-HHHHHHHHHHHHHHHHHHHHHH---------------HHTTS--EEEESS------TTS-TTTS------GGG-H
T ss_pred CCcccHHHHHHHHHHHHHHHHhhcCCc---------------cccce--eEEeCcC-----CCc-cccc------CCCCH
Confidence 344566899999999999999999822 22233 1222333 111 1111 12344
Q ss_pred chhhHHHHHHHHHHHhhcCCceee
Q psy14380 428 EAYDELIDEFMKAVVKRYGQNTLI 451 (513)
Q Consensus 428 ~~y~~~~~~~~~~v~~~~g~~~~~ 451 (513)
++|-++.+...++||+.. |...|
T Consensus 177 ~ey~~ly~~~~~~iK~~~-p~~~v 199 (486)
T PF01229_consen 177 EEYFELYDATARAIKAVD-PELKV 199 (486)
T ss_dssp HHHHHHHHHHHHHHHHH--TTSEE
T ss_pred HHHHHHHHHHHHHHHHhC-CCCcc
Confidence 579999999999999987 44433
No 57
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=20.75 E-value=1.5e+02 Score=32.40 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=27.2
Q ss_pred cCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC
Q psy14380 184 DDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219 (513)
Q Consensus 184 DDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG 219 (513)
|--.|||--++-+++. .++..+.+.+++|+|+|
T Consensus 179 dn~~g~g~s~~~~i~r---~t~~~l~GktVvViG~G 211 (413)
T cd00401 179 DNLYGCRESLIDGIKR---ATDVMIAGKVAVVAGYG 211 (413)
T ss_pred cccchhchhhHHHHHH---hcCCCCCCCEEEEECCC
Confidence 5568999888877764 55668999999999999
No 58
>PF12227 DUF3603: Protein of unknown function (DUF3603); InterPro: IPR020909 This entry is represented by Bacteriophage phiNIT1, Orf that is a member of UPF0736. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry describes proteins of unknown function.
Probab=20.56 E-value=54 Score=33.07 Aligned_cols=29 Identities=45% Similarity=0.744 Sum_probs=22.7
Q ss_pred eeeeecCCceeeccCCCCCCCcCcccchheee
Q psy14380 281 RAIVVTDGERILGLGDLGACGMGIPVGKLSLY 312 (513)
Q Consensus 281 ~A~vVTdg~~Ilg~gDlG~~g~~~~vgKlsl~ 312 (513)
-|.++|||++||.+--+| -.|||+|..+-
T Consensus 50 Y~fi~TDg~~IlavDt~g---y~ipiRKSRLi 78 (214)
T PF12227_consen 50 YCFIVTDGERILAVDTIG---YKIPIRKSRLI 78 (214)
T ss_pred eeEEEecCCceEEEEecC---CCceeeecccC
Confidence 378999999999877665 45888888763
No 59
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=20.55 E-value=1.1e+02 Score=31.25 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=25.2
Q ss_pred cCcccccCcchhHHHHHHHHHhhhhhcCc--ccccceEEEecCC
Q psy14380 178 KYCTFNDDIQGTASVAVAGLMAGRRVTGK--KISECRFLFLGAG 219 (513)
Q Consensus 178 ~~~~FNDDIQGTgAVaLAGlLaAlr~tg~--~l~d~rivf~GAG 219 (513)
+..=+|-|.. |++.+++..+. ++++++++++|||
T Consensus 99 ~l~G~NTD~~--------G~~~~l~~~~~~~~~~~k~vlvlGaG 134 (282)
T TIGR01809 99 IWKGDNTDWD--------GIAGALANIGKFEPLAGFRGLVIGAG 134 (282)
T ss_pred cEEEecCCHH--------HHHHHHHhhCCccccCCceEEEEcCc
Confidence 4556788875 46666665553 5889999999999
Done!