Query psy14380
Match_columns 513
No_of_seqs 234 out of 1874
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 18:24:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gq2_A Malic enzyme; oxidoredu 100.0 4.1E-77 1.4E-81 635.5 3.6 295 8-324 65-512 (555)
2 1pj3_A NAD-dependent malic enz 100.0 1E-76 3.4E-81 634.0 3.8 290 8-324 67-517 (564)
3 1o0s_A NAD-ME, NAD-dependent m 100.0 5.9E-77 2E-81 637.9 1.9 292 8-324 101-549 (605)
4 1pj3_A NAD-dependent malic enz 100.0 4.2E-65 1.4E-69 544.6 9.9 265 24-513 29-294 (564)
5 1gq2_A Malic enzyme; oxidoredu 100.0 7.9E-65 2.7E-69 541.3 9.7 265 24-513 27-292 (555)
6 1o0s_A NAD-ME, NAD-dependent m 100.0 1.1E-64 3.6E-69 543.4 8.2 265 24-513 63-330 (605)
7 3nv9_A Malic enzyme; rossmann 100.0 8.2E-51 2.8E-55 427.3 4.6 248 27-323 59-427 (487)
8 2a9f_A Putative malic enzyme ( 100.0 1.1E-48 3.8E-53 405.6 2.0 238 26-322 33-388 (398)
9 1vl6_A Malate oxidoreductase; 100.0 2.4E-45 8.2E-50 379.9 -0.8 240 16-319 28-386 (388)
10 3nv9_A Malic enzyme; rossmann 100.0 4.4E-44 1.5E-48 376.4 7.6 183 220-513 44-229 (487)
11 2a9f_A Putative malic enzyme ( 100.0 4.6E-38 1.6E-42 326.2 5.0 177 220-513 19-198 (398)
12 1vl6_A Malate oxidoreductase; 100.0 1.5E-36 5.1E-41 314.3 3.7 177 220-513 23-202 (388)
13 2dvm_A Malic enzyme, 439AA lon 100.0 2.3E-32 7.8E-37 286.9 6.8 245 17-323 23-394 (439)
14 2dvm_A Malic enzyme, 439AA lon 99.9 1.2E-25 4.2E-30 236.0 4.7 177 220-513 17-196 (439)
15 3gvp_A Adenosylhomocysteinase 84.9 0.94 3.2E-05 48.0 5.5 84 422-513 109-230 (435)
16 3h9u_A Adenosylhomocysteinase; 76.2 1.7 6E-05 45.9 3.9 39 471-512 172-220 (436)
17 3gvp_A Adenosylhomocysteinase 69.3 4.6 0.00016 42.8 5.1 39 178-219 181-229 (435)
18 3ond_A Adenosylhomocysteinase; 60.8 5.9 0.0002 42.5 4.0 34 476-512 241-274 (488)
19 3h9u_A Adenosylhomocysteinase; 53.1 9.4 0.00032 40.4 3.9 39 178-219 172-220 (436)
20 3ond_A Adenosylhomocysteinase; 51.3 8.1 0.00028 41.4 3.1 39 178-219 226-274 (488)
21 1jfx_A 1,4-beta-N-acetylmurami 44.7 24 0.00083 32.9 5.0 49 322-379 91-139 (217)
22 2x8r_A Glycosyl hydrolase; pep 42.7 26 0.00088 32.6 4.8 49 322-379 90-138 (210)
23 2yfq_A Padgh, NAD-GDH, NAD-spe 39.8 94 0.0032 32.5 8.9 85 428-512 119-221 (421)
24 3ues_A Alpha-1,3/4-fucosidase; 39.2 57 0.0019 34.7 7.3 82 358-477 112-206 (478)
25 3pwz_A Shikimate dehydrogenase 37.8 26 0.00088 34.2 4.1 34 178-219 95-129 (272)
26 3k92_A NAD-GDH, NAD-specific g 36.9 93 0.0032 32.8 8.4 85 428-512 129-230 (424)
27 3o8q_A Shikimate 5-dehydrogena 36.2 28 0.00096 34.1 4.1 34 178-219 102-135 (281)
28 2aal_A Malonate semialdehyde d 35.5 1.6E+02 0.0054 24.9 8.3 96 352-460 13-114 (131)
29 2wag_A Lysozyme, putative; hyd 32.9 43 0.0015 31.5 4.7 47 323-379 99-145 (220)
30 3fbt_A Chorismate mutase and s 31.1 39 0.0013 33.2 4.2 34 178-219 98-131 (282)
31 3n4h_A Putative tautomerase; C 30.5 1.5E+02 0.0052 25.6 7.5 93 348-460 9-111 (148)
32 4fcc_A Glutamate dehydrogenase 30.3 2.4E+02 0.0081 29.9 10.2 87 426-512 142-244 (450)
33 1p77_A Shikimate 5-dehydrogena 30.0 42 0.0014 32.1 4.1 34 178-219 95-128 (272)
34 3fbt_A Chorismate mutase and s 30.0 36 0.0012 33.5 3.7 35 471-513 98-132 (282)
35 1gtm_A Glutamate dehydrogenase 29.9 1.6E+02 0.0054 30.6 8.7 84 428-512 117-221 (419)
36 3don_A Shikimate dehydrogenase 29.9 33 0.0011 33.6 3.4 34 178-219 93-126 (277)
37 3eyp_A Putative alpha-L-fucosi 29.7 79 0.0027 33.4 6.5 85 358-477 104-197 (469)
38 3aoe_E Glutamate dehydrogenase 29.6 1.5E+02 0.0051 31.0 8.5 85 428-512 126-227 (419)
39 3o8q_A Shikimate 5-dehydrogena 28.7 39 0.0013 33.0 3.7 34 471-512 102-135 (281)
40 1p77_A Shikimate 5-dehydrogena 28.4 41 0.0014 32.2 3.7 34 471-512 95-128 (272)
41 3don_A Shikimate dehydrogenase 28.3 33 0.0011 33.6 3.1 34 471-512 93-126 (277)
42 3tum_A Shikimate dehydrogenase 27.9 47 0.0016 32.4 4.1 34 178-219 101-134 (269)
43 4f8x_A Endo-1,4-beta-xylanase; 27.7 1.4E+02 0.0046 30.2 7.6 92 351-471 101-203 (335)
44 2dlx_A UBX domain-containing p 27.3 32 0.0011 30.7 2.5 58 323-404 42-111 (153)
45 3tum_A Shikimate dehydrogenase 27.1 46 0.0016 32.5 3.9 34 471-512 101-134 (269)
46 3jyo_A Quinate/shikimate dehyd 27.0 45 0.0015 32.6 3.8 34 471-512 103-136 (283)
47 3jyo_A Quinate/shikimate dehyd 27.0 46 0.0016 32.5 3.9 34 178-219 103-136 (283)
48 3aog_A Glutamate dehydrogenase 26.1 1.8E+02 0.0063 30.6 8.4 85 428-512 143-244 (440)
49 2egg_A AROE, shikimate 5-dehyd 26.0 42 0.0014 32.8 3.3 41 182-230 120-175 (297)
50 1v0l_A Endo-1,4-beta-xylanase 25.7 1.9E+02 0.0066 28.5 8.2 91 351-471 96-195 (313)
51 3t4e_A Quinate/shikimate dehyd 25.4 45 0.0015 33.3 3.5 34 471-512 124-157 (312)
52 3pwz_A Shikimate dehydrogenase 25.3 41 0.0014 32.7 3.2 34 471-512 95-129 (272)
53 3r3j_A Glutamate dehydrogenase 24.5 2E+02 0.0067 30.7 8.3 85 428-512 148-248 (456)
54 3tnl_A Shikimate dehydrogenase 24.4 51 0.0018 32.9 3.7 34 471-512 130-163 (315)
55 1hjs_A Beta-1,4-galactanase; 4 24.0 2.7E+02 0.0093 27.5 8.9 111 353-468 55-195 (332)
56 4ekj_A Beta-xylosidase; TIM-ba 23.9 75 0.0026 32.3 4.9 69 352-451 129-198 (500)
57 4dh4_A MIF; trimer, isomerase; 23.3 2.4E+02 0.0082 23.2 7.2 85 354-460 14-106 (114)
58 3emz_A Xylanase, endo-1,4-beta 22.8 2.7E+02 0.0091 27.9 8.6 92 351-471 101-199 (331)
59 1nvt_A Shikimate 5'-dehydrogen 22.8 56 0.0019 31.3 3.5 38 193-230 111-160 (287)
60 2hk9_A Shikimate dehydrogenase 22.0 62 0.0021 30.9 3.6 24 489-512 115-138 (275)
61 2zxd_A Alpha-L-fucosidase, put 22.0 1.6E+02 0.0053 31.1 6.9 92 358-477 152-253 (455)
62 3niy_A Endo-1,4-beta-xylanase; 21.3 2.6E+02 0.0088 28.2 8.1 90 352-471 119-215 (341)
63 3u7b_A Endo-1,4-beta-xylanase; 21.2 1.6E+02 0.0055 29.5 6.6 90 352-471 100-196 (327)
64 2tmg_A Protein (glutamate dehy 20.6 2.7E+02 0.0093 29.0 8.3 85 428-512 117-218 (415)
65 1nyt_A Shikimate 5-dehydrogena 20.5 71 0.0024 30.4 3.7 26 487-512 103-128 (271)
No 1
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=100.00 E-value=4.1e-77 Score=635.54 Aligned_cols=295 Identities=43% Similarity=0.685 Sum_probs=242.0
Q ss_pred hhhccchhhHHHHHhhCcccccceeeccchhhhhhhhhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhcccc-c
Q psy14380 8 LIMDRNERLFFRLLSENVEELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEE-L 86 (513)
Q Consensus 8 ~L~drNe~LFYrLL~~hleEllPIVYTPTVGeACQ~ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~-i 86 (513)
.|+++||+|||||+++|++|+|||+||||||++||+||++|++|+ ++|+|++|+++ ++.++.+|+++ +
T Consensus 65 ~L~~~Ne~Lfy~ll~~~~~e~lpivYTP~V~~ac~~~s~i~~~p~---------g~yis~~d~~~--i~~~l~n~~~~~~ 133 (555)
T 1gq2_A 65 SLQDRNEKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPR---------GLFITIHDRGH--IATMLQSWPESVI 133 (555)
T ss_dssp HHHHHCHHHHHHHHHHTHHHHHHHHSTTHHHHHHHTHHHHCSSCC---------SEEEEGGGTTC--HHHHHHTSSCSCC
T ss_pred HhcCcceeeehhhHhhhHHHhcCcccCchHHHHHHHHHHHhcChh---------hhhcccCCHHH--HHHHHhcCCCCCc
Confidence 478999999999999999999999999999999999999998653 46789999874 77888898754 5
Q ss_pred cCEEEcCch---hhhh---hhcccc------ccCCCeeEEeecCCcchHHHhhccCCCc-cccccccchhh---------
Q psy14380 87 MPIVYTPTV---GLAC---QKFGLI------FRRPRGLFITIHDKGHCFDLLKNWTITN-EVIRDKIKMTK--------- 144 (513)
Q Consensus 87 ~~IVVTDG~---Gig~---~g~gi~------~~p~~gL~I~I~d~g~~~~vl~d~ttnn-e~L~dplY~g~--------- 144 (513)
..||||||. |||+ ++++++ |+...|+ ||.+++||++|.|||| ++|.||+|+|.
T Consensus 134 ~v~VVTDG~~ILGLGD~G~~g~~ipvGKl~Ly~~~aGI-----dP~~~lPI~LD~GTnn~~LL~DplYlG~r~~Rv~g~e 208 (555)
T 1gq2_A 134 KAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGV-----KPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQA 208 (555)
T ss_dssp CEEEEECSSSCGGGCCCGGGGGHHHHHHHHHHHHTTCC-----CGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCTHH
T ss_pred EEEEEEccccccccCCCCCCccccchhHHHHhHhccCC-----ChhheeeeEeecCCCchhhcCCCccCCcCCCCCchHH
Confidence 589999983 5433 344443 2212221 3444444444444454 56678999983
Q ss_pred ---hHHHHHH-HHHhh-c---cccccCCccchHHHHHHhcccCcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEe
Q psy14380 145 ---VTKKIQE-QRLQW-Y---GHFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFL 216 (513)
Q Consensus 145 ---~~~~v~~-a~~~~-~---~qFEDF~~~NAfrlLerYR~~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~ 216 (513)
+.+++.+ ++..| + .|||||+++|||++|+|||+++|||||||||||+|+||||+||+|++|++|+||||||+
T Consensus 209 yd~fvdefv~av~~~fGp~~~I~~EDf~~~~af~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~d~riv~~ 288 (555)
T 1gq2_A 209 YDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQ 288 (555)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSEEEETTTHHHHHHHHHHHHHHHHHHTSCGGGCCEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCcEEeecccCCccHHHHHHHHhccCCEecCccchHHHHHHHHHHHHHHHhCCChhhcEEEEE
Confidence 3344444 44555 2 49999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-----------------------------------------------------------------------------
Q psy14380 217 GAG----------------------------------------------------------------------------- 219 (513)
Q Consensus 217 GAG----------------------------------------------------------------------------- 219 (513)
|||
T Consensus 289 GAGaAg~gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~~l~~~k~~~A~~~~~~~~L~eav~~vkp~vlIG~S 368 (555)
T 1gq2_A 289 GAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVA 368 (555)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGCBSCCCCCCHHHHHHHHCCSEEEECS
T ss_pred CCCHHHHHHHHHHHHHHHHcCCChHHHhCcEEEEECCCeeeCCCCCchHHHHHHHhhcCCCCCHHHHHhhcCCCEEEEec
Confidence 999
Q ss_pred --------------------------------------------CceEEEeeCCCCCCccc-CCeeeccCCCcceeeccc
Q psy14380 220 --------------------------------------------EGRCIFASGSPFPPVKM-ETKTYYPGQGNNAYIFPG 254 (513)
Q Consensus 220 --------------------------------------------~GkalfAsGSPfp~V~~-~Gk~y~pgQ~NN~yiFPG 254 (513)
+|+|||||||||+||+| +||+|+||||||+|+|||
T Consensus 369 ~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivATGspf~pv~~~~Grs~~pnQ~NN~liFPG 448 (555)
T 1gq2_A 369 AIGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPG 448 (555)
T ss_dssp CCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHHTTTCCEEEESSCCCCEECTTSCEECCEECCGGGTHHH
T ss_pred CCCCCCCHHHHHHHHhcCCCCEEEECCCCCCccCcCHHHHHHhccCCEEEEeCCCCCCeeecCCcEeccccccceeeccc
Confidence 69999999999999999 999999999999999999
Q ss_pred cchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCCcCcccchheeehhccCCCCCcee
Q psy14380 255 VALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCL 324 (513)
Q Consensus 255 IgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g~~~~vgKlsl~~A~agI~~a~~~ 324 (513)
||+|+++++|++|||+|+.+||+++ |.++++++ +.-|-+.|+-.- +++++..+|.+++..|+--
T Consensus 449 i~~Gal~~~A~~Itd~M~~aAA~al--A~~v~~~~--~~~~~i~P~~~~--ir~vs~~VA~aVa~~A~~~ 512 (555)
T 1gq2_A 449 VALGVISCGLKHIGDDVFLTTAEVI--AQEVSEEN--LQEGRLYPPLVT--IQQVSLKIAVRIAKEAYRN 512 (555)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHH--HHTCCHHH--HHHTCSSCCGGG--HHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhHhcCCeECCHHHHHHHHHHH--Hhcccccc--CCCCcccCCcch--hhHhHHHHHHHHHHHHHHc
Confidence 9999999999999999999999997 88988765 555666665322 3678888888888766543
No 2
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Probab=100.00 E-value=1e-76 Score=634.02 Aligned_cols=290 Identities=46% Similarity=0.719 Sum_probs=243.2
Q ss_pred hhhccchhhHHHHHhhCcccccceeeccchhhhhhhhhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhcccc-c
Q psy14380 8 LIMDRNERLFFRLLSENVEELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEE-L 86 (513)
Q Consensus 8 ~L~drNe~LFYrLL~~hleEllPIVYTPTVGeACQ~ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~-i 86 (513)
.|+++||+|||||+++|++|+|||+||||||++||+||++||+|+ .+|+|++|+++ ++.++.+|+.. +
T Consensus 67 ~L~~~Ne~Lfy~ll~~~~~e~lpivYTP~Vg~ac~~~s~i~~~p~---------g~ylsi~d~~~--i~~~l~n~~~~~v 135 (564)
T 1pj3_A 67 GIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPK---------GLFISISDRGH--VRSIVDNWPENHV 135 (564)
T ss_dssp HHHTTCHHHHHHHHHHCHHHHHHHHSTTHHHHHHHTHHHHCSSCC---------SEEEEGGGTTC--HHHHHTTCSCSCC
T ss_pred HhhcccceeehhhhhhCHHHhCCeeeCccHHHHHHHHHHHhcCcc---------cccccccCHHH--HHHHHHhCCCCCc
Confidence 488999999999999999999999999999999999999998653 35689999874 88888999844 5
Q ss_pred cCEEEcCch---h---hhhhhcccc------------ccCCCeeEEeecCCcchHHHhhccCCCccccccccchhh----
Q psy14380 87 MPIVYTPTV---G---LACQKFGLI------------FRRPRGLFITIHDKGHCFDLLKNWTITNEVIRDKIKMTK---- 144 (513)
Q Consensus 87 ~~IVVTDG~---G---ig~~g~gi~------------~~p~~gL~I~I~d~g~~~~vl~d~ttnne~L~dplY~g~---- 144 (513)
..||||||. | +|+++|+++ +.|.+.+||++ |.| |||+++|.||+|+|.
T Consensus 136 ~v~VVTDG~~ILGLGD~G~~gm~ipvGKl~Ly~~~aGIdP~~~lPI~l-Dvg---------Tnn~~LL~DPlYlG~r~~R 205 (564)
T 1pj3_A 136 KAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCI-DVG---------TDNIALLKDPFYMGLYQKR 205 (564)
T ss_dssp CEEEEECSSSCTTSCCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEE-ESC---------CCCTTGGGCTTCCSCSSCC
T ss_pred eEEEEEcccccccCCCCCCCcccceehHHHHHHhccCCChhheeeeEe-ecC---------cCchhhccCCcccCcCCCC
Confidence 689999983 3 344444444 34555566655 243 455556678999983
Q ss_pred --------hHHHHHHH-HHhh-c---cccccCCccchHHHHHHhcccCcccccCcchhHHHHHHHHHhhhhhcCcccccc
Q psy14380 145 --------VTKKIQEQ-RLQW-Y---GHFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISEC 211 (513)
Q Consensus 145 --------~~~~v~~a-~~~~-~---~qFEDF~~~NAfrlLerYR~~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~ 211 (513)
+.+++.++ +..| + .|||||+++|||++|+|||+++|||||||||||+|+||||+||+|++|++|+||
T Consensus 206 v~g~eYd~fvdefv~av~~~fG~~~~I~~EDf~~~~af~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~d~ 285 (564)
T 1pj3_A 206 DRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEH 285 (564)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSSEEEHHHHHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred CchhhHHHHHHHHHHHHHHHcCCCcEEeehhcCCccHHHHHHHhccCCCEeCCCCchHHHHHHHHHHHHHHHhCCcHhHc
Confidence 34555544 4445 3 599999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCC------------------------------------------------------------------------
Q psy14380 212 RFLFLGAG------------------------------------------------------------------------ 219 (513)
Q Consensus 212 rivf~GAG------------------------------------------------------------------------ 219 (513)
||||+|||
T Consensus 286 riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~~~D~~Gli~~~r~~~l~~~k~~~A~~~~~~~~~~L~eav~~vk 365 (564)
T 1pj3_A 286 KILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILK 365 (564)
T ss_dssp CEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHHC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCCChHHhhCcEEEEeCCCeEECCCcccchHHHHHHHHhcCccccCCHHHHHhhcC
Confidence 99999999
Q ss_pred ----------------------------------------------------CceEEEeeCCCCCCccc-CCeeeccCCC
Q psy14380 220 ----------------------------------------------------EGRCIFASGSPFPPVKM-ETKTYYPGQG 246 (513)
Q Consensus 220 ----------------------------------------------------~GkalfAsGSPfp~V~~-~Gk~y~pgQ~ 246 (513)
+|+|||||||||+||+| +||+|+||||
T Consensus 366 p~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivATGspf~pv~~~~G~~~~pnQ~ 445 (564)
T 1pj3_A 366 PSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQG 445 (564)
T ss_dssp CSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCSSGGGCSCCHHHHHHHTTTCCEEEESSCCCCEECTTSCEECCEEC
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCccCcCHHHHHhhccCCEEEEeCCCCCceeecCCceeccccc
Confidence 69999999999999999 9999999999
Q ss_pred cceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCCcCcccchheeehhccCCCCCcee
Q psy14380 247 NNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCL 324 (513)
Q Consensus 247 NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g~~~~vgKlsl~~A~agI~~a~~~ 324 (513)
||+|+|||||+|+++++|++|||+|+.+||+++ |.++++++ ++-|-+.|+-.- +++++..+|.+++..|+--
T Consensus 446 NN~liFPGi~~Gal~~~A~~Itd~M~~aAA~aL--A~~v~~~~--~~~~~i~P~~~~--~r~vs~~VA~aVa~~A~~~ 517 (564)
T 1pj3_A 446 NNVYIFPGVALAVILCNTRHISDSVFLEAAKAL--TSQLTDEE--LAQGRLYPPLAN--IQEVSINIAIKVTEYLYAN 517 (564)
T ss_dssp CGGGTHHHHHHHHHHTTCSCCCHHHHHHHHHHH--HTTCCHHH--HHTTCSSCCGGG--HHHHHHHHHHHHHHHHHHT
T ss_pred ceeeeccchhhhhHhcCCeECCHHHHHHHHHHH--Hhhccccc--CCCCcccCCcch--hhHhHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999997 88988765 566666665322 3678888888888766543
No 3
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*
Probab=100.00 E-value=5.9e-77 Score=637.95 Aligned_cols=292 Identities=43% Similarity=0.647 Sum_probs=242.2
Q ss_pred hhhccchhhHHHHHhhCcccccceeeccchhhhhhhhhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhcccc-c
Q psy14380 8 LIMDRNERLFFRLLSENVEELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEE-L 86 (513)
Q Consensus 8 ~L~drNe~LFYrLL~~hleEllPIVYTPTVGeACQ~ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~-i 86 (513)
.|+++||+|||||+++|++|+|||+||||||++||+||++|++|+ .+|+|++|+.-+.++.++.+|+.+ +
T Consensus 101 ~L~~~Ne~Lfyrll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~---------g~yis~~d~~~~~i~~~l~n~~~~~~ 171 (605)
T 1o0s_A 101 GLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKPK---------GLYITINDNSVSKIYQILSNWHEEDV 171 (605)
T ss_dssp HHHHHCHHHHHHHHHHTHHHHHHHHSTTHHHHHHHHHCSCCCCCC---------SEEEEGGGCSHHHHHHHHTTSSCSCC
T ss_pred HhhcccchhhhhhhhhCHHHhCCeeeCccHHHHHHHHHHHhcChH---------hhhccccCcccchHHHHHhcCCCCCc
Confidence 478999999999999999999999999999999999999998653 467899998212588888999754 5
Q ss_pred cCEEEcCch---hh---hhhhcccc------------ccCCCeeEEeecCCcchHHHhhccCCCccccccccchhh----
Q psy14380 87 MPIVYTPTV---GL---ACQKFGLI------------FRRPRGLFITIHDKGHCFDLLKNWTITNEVIRDKIKMTK---- 144 (513)
Q Consensus 87 ~~IVVTDG~---Gi---g~~g~gi~------------~~p~~gL~I~I~d~g~~~~vl~d~ttnne~L~dplY~g~---- 144 (513)
..||||||. || |+++++++ +.|.+.+||++ |+| |||+++|.||+|+|.
T Consensus 172 ~v~VVTDG~~ILGLGD~G~~g~~ipvGKl~Ly~~~aGIdP~~~lPI~L-DvG---------Tnne~LL~DPlYlG~r~~R 241 (605)
T 1o0s_A 172 RAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLL-DVG---------TNNMDLLNDPFYIGLRHKR 241 (605)
T ss_dssp CEEEEECSSCBTTTBCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEE-ESC---------CCCHHHHHCTTCCSCSSCC
T ss_pred eEEEEEccccceecCCCCCCcCcceeeHHHHHHhccCCChhheeeeEe-ccC---------CChhhhccCCcccCcCCCC
Confidence 589999983 44 33344443 24455555555 233 444556678999983
Q ss_pred --------hHHHHHH-HHHhh-c---cccccCCccchHHHHHHhcccCcccccCcchhHHHHHHHHHhhhhhcCcccccc
Q psy14380 145 --------VTKKIQE-QRLQW-Y---GHFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISEC 211 (513)
Q Consensus 145 --------~~~~v~~-a~~~~-~---~qFEDF~~~NAfrlLerYR~~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~ 211 (513)
+.+++.+ ++..| + .|||||+++|||++|+|||+++|||||||||||+|+||||+||+|++|++|+||
T Consensus 242 v~g~~Yd~fvdefv~av~~~fGp~~~I~~EDf~~p~af~il~ryr~~ipvFnDDiqGTA~V~lAgllnAlki~gk~l~d~ 321 (605)
T 1o0s_A 242 VRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQE 321 (605)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSEEEEHHHHHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred CChHHHHHHHHHHHHHHHHHhCCCcEeeHhhcCCccHHHHHHHhccCCCeeCcccchHHHHHHHHHHHHHHHhCCChhhc
Confidence 3444444 44555 2 499999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCC------------------------------------------------------------------------
Q psy14380 212 RFLFLGAG------------------------------------------------------------------------ 219 (513)
Q Consensus 212 rivf~GAG------------------------------------------------------------------------ 219 (513)
||||+|||
T Consensus 322 riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~l~~~k~~~A~~~~~~~~L~eav~~vkpdV 401 (605)
T 1o0s_A 322 KYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAKDMPETTSILEVIRAARPGA 401 (605)
T ss_dssp CEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCBSSCCCCCHHHHHHHHCCSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCCCchHHHHHHHhhcCCCCCHHHHHhhcCCCE
Confidence 99999999
Q ss_pred -------------------------------------------------CceEEEeeCCCCCCcccCCeeeccCCCccee
Q psy14380 220 -------------------------------------------------EGRCIFASGSPFPPVKMETKTYYPGQGNNAY 250 (513)
Q Consensus 220 -------------------------------------------------~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~y 250 (513)
+|+|||||||||+||+|+||+|+||||||+|
T Consensus 402 lIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivATGspF~pV~~~Grs~~pnQ~NN~l 481 (605)
T 1o0s_A 402 LIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFELNGHTYKPGQGNNAY 481 (605)
T ss_dssp EEECSSCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHTTTSCCEEEESSCCCCEEETTEEECCEECCGGG
T ss_pred EEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHhhccCCEEEEECCCCCCeeECCEEecccccccee
Confidence 5999999999999999999999999999999
Q ss_pred eccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCCcCcccchheeehhccCCCCCcee
Q psy14380 251 IFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCL 324 (513)
Q Consensus 251 iFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g~~~~vgKlsl~~A~agI~~a~~~ 324 (513)
+|||||+|+++++|++|||+|+.+||+++ |.++++++ +.-|-+.|+-.- +++++..+|.+++..|+--
T Consensus 482 iFPGi~lGal~~~A~~Itd~M~~aAA~aL--A~~v~~~~--~~~~~i~P~~~d--ir~vs~~VA~AVa~~A~~~ 549 (605)
T 1o0s_A 482 IFPGVALGTILFQIRHVDNDLFLLAAKKV--ASCVTEDS--LKVGRVYPQLKE--IREISIQIAVEMAKYCYKN 549 (605)
T ss_dssp THHHHHHHHHHHTBSCCCHHHHHHHHHHH--HHTCCHHH--HTTTCCSCCGGG--HHHHHHHHHHHHHHHHHHT
T ss_pred eccchhhhhhhcCCeEcCHHHHHHHHHHH--Hhhccccc--CCCCcccCCcch--hhHhHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999997 88988765 555666665322 3678899999888866543
No 4
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Probab=100.00 E-value=4.2e-65 Score=544.64 Aligned_cols=265 Identities=62% Similarity=1.084 Sum_probs=234.3
Q ss_pred Ccccccceeeccchhhhhhh-hhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhccccccCEEEcCchhhhhhhc
Q psy14380 24 NVEELMPIVYTPTVGLACQK-SEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTVGLACQKF 102 (513)
Q Consensus 24 hleEllPIVYTPTVGeACQ~-ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~i~~IVVTDG~Gig~~g~ 102 (513)
+|.-|||-... |.-+-+++ |..+.+++. ...++ .|..+++++++.+||+++.+++++.++|++|+|+|.+|+++
T Consensus 29 ~l~GLLPp~v~-t~e~Q~~r~~~~~~~~~~--~l~k~--~~L~~L~~~Ne~Lfy~ll~~~~~e~lpivYTP~Vg~ac~~~ 103 (564)
T 1pj3_A 29 GLQGLLPPKIE-TQDIQALRFHRNLKKMTS--PLEKY--IYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQY 103 (564)
T ss_dssp TCTTTSCSCCC-CHHHHHHHHHHHHHHCCS--HHHHH--HHHHHHHTTCHHHHHHHHHHCHHHHHHHHSTTHHHHHHHTH
T ss_pred CCCcCCCCCcC-CHHHHHHHHHHHHhcCCC--cHHHH--HHHHHhhcccceeehhhhhhCHHHhCCeeeCccHHHHHHHH
Confidence 46778875433 44444444 444333221 12232 45578899999999999999999999999999999999999
Q ss_pred cccccCCCeeEEeecCCcchHHHhhccCCCccccccccchhhhHHHHHHHHHhhccccccCCccchHHHHHHhcccCccc
Q psy14380 103 GLIFRRPRGLFITIHDKGHCFDLLKNWTITNEVIRDKIKMTKVTKKIQEQRLQWYGHFEDFGNHNAFRFLDKYRDKYCTF 182 (513)
Q Consensus 103 gi~~~p~~gL~I~I~d~g~~~~vl~d~ttnne~L~dplY~g~~~~~v~~a~~~~~~qFEDF~~~NAfrlLerYR~~~~~F 182 (513)
+..++.|+|+++++.|+++...++.+|+
T Consensus 104 s~i~~~p~g~ylsi~d~~~i~~~l~n~~---------------------------------------------------- 131 (564)
T 1pj3_A 104 GHIFRRPKGLFISISDRGHVRSIVDNWP---------------------------------------------------- 131 (564)
T ss_dssp HHHCSSCCSEEEEGGGTTCHHHHHTTCS----------------------------------------------------
T ss_pred HHHhcCcccccccccCHHHHHHHHHhCC----------------------------------------------------
Confidence 9888889999999999998888888774
Q ss_pred ccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCCCceEEEeeCCCCCCcccCCeeeccCCCcceeeccccchheecc
Q psy14380 183 NDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGEGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIAT 262 (513)
Q Consensus 183 NDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPGIgLGai~s 262 (513)
T Consensus 132 -------------------------------------------------------------------------------- 131 (564)
T 1pj3_A 132 -------------------------------------------------------------------------------- 131 (564)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCCcCcccchheeehhccCCCCCceeceeeecCCCccccccCcc
Q psy14380 263 GIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDPL 342 (513)
Q Consensus 263 ~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g~~~~vgKlsl~~A~agI~~a~~~p~~~~~~~~~~~~~~d~~ 342 (513)
.+.+. .+|||||+|||||||+|++||+|||||++||++||||+|++|||||||+||||++||+||+
T Consensus 132 -------------~~~v~-v~VVTDG~~ILGLGD~G~~gm~ipvGKl~Ly~~~aGIdP~~~lPI~lDvgTnn~~LL~DPl 197 (564)
T 1pj3_A 132 -------------ENHVK-AVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPF 197 (564)
T ss_dssp -------------CSCCC-EEEEECSSSCTTSCCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTT
T ss_pred -------------CCCce-EEEEEcccccccCCCCCCCcccceehHHHHHHhccCCChhheeeeEeecCcCchhhccCCc
Confidence 22232 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCChhhHHHHHHHHHHHHHHhhcccccccccccCCccchhhcccccCceeeeecCCCcccccccCcccccccc
Q psy14380 343 YVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQ 422 (513)
Q Consensus 343 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (513)
|+|+||+|.+|++||+|+||||++|+++|
T Consensus 198 YlG~r~~Rv~g~eYd~fvdefv~av~~~f--------------------------------------------------- 226 (564)
T 1pj3_A 198 YMGLYQKRDRTQQYDDLIDEFMKAITDRY--------------------------------------------------- 226 (564)
T ss_dssp CCSCSSCCCCSHHHHHHHHHHHHHHHHHH---------------------------------------------------
T ss_pred ccCcCCCCCchhhHHHHHHHHHHHHHHHc---------------------------------------------------
Confidence 99999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHHHHHhhcCCceeeeeccCCCccHHHHHHHhhccCCeeccCCccHHHHHHHHHHHHHHHhCCcCC
Q psy14380 423 KRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKIS 502 (513)
Q Consensus 423 ~~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~~~~l~~~~~~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~ 502 (513)
||+++||||||+++|||++|+|||+++|||||||||||+|++|||++|+|++||+|+
T Consensus 227 -----------------------G~~~~I~~EDf~~~~af~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~ 283 (564)
T 1pj3_A 227 -----------------------GRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPIS 283 (564)
T ss_dssp -----------------------CTTCEEEECSCCHHHHHHHHHHHTTTSSEEEHHHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred -----------------------CCCcEEeehhcCCccHHHHHHHhccCCCEeCCCCchHHHHHHHHHHHHHHHhCCcHh
Confidence 599999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEeccCC
Q psy14380 503 ECRFLFLGAGE 513 (513)
Q Consensus 503 ~~~~~~~gag~ 513 (513)
|+||||+|||+
T Consensus 284 d~riv~~GAGa 294 (564)
T 1pj3_A 284 EHKILFLGAGE 294 (564)
T ss_dssp GCCEEEECCSH
T ss_pred HcEEEEeCCCH
Confidence 99999999995
No 5
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=100.00 E-value=7.9e-65 Score=541.25 Aligned_cols=265 Identities=62% Similarity=1.065 Sum_probs=233.8
Q ss_pred Ccccccceeeccchhhhhhh-hhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhccccccCEEEcCchhhhhhhc
Q psy14380 24 NVEELMPIVYTPTVGLACQK-SEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTVGLACQKF 102 (513)
Q Consensus 24 hleEllPIVYTPTVGeACQ~-ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~i~~IVVTDG~Gig~~g~ 102 (513)
+|.-|||-.. -|.-+-+++ |..+.+++. ...++ .|..+++|+++.+||+++.+++++.++|++|+|+|.+|+++
T Consensus 27 ~l~GLLPp~v-~t~e~Q~~r~~~~~~~~~~--~l~k~--~~L~~L~~~Ne~Lfy~ll~~~~~e~lpivYTP~V~~ac~~~ 101 (555)
T 1gq2_A 27 NIHGLLPPCF-LGQDAQVYSILKNFERLTS--DLDRY--ILLMSLQDRNEKLFYKVLTSDIERFMPIVYTPTVGLACQHY 101 (555)
T ss_dssp TCTTSSCSCB-CCHHHHHHHHHHHHHHCCC--HHHHH--HHHHHHHHHCHHHHHHHHHHTHHHHHHHHSTTHHHHHHHTH
T ss_pred CCccCCCCCc-CCHHHHHHHHHHHHhcCCC--cHHHH--HHHHHhcCcceeeehhhHhhhHHHhcCcccCchHHHHHHHH
Confidence 4677887533 344444444 444333221 12232 45578899999999999999999999999999999999999
Q ss_pred cccccCCCeeEEeecCCcchHHHhhccCCCccccccccchhhhHHHHHHHHHhhccccccCCccchHHHHHHhcccCccc
Q psy14380 103 GLIFRRPRGLFITIHDKGHCFDLLKNWTITNEVIRDKIKMTKVTKKIQEQRLQWYGHFEDFGNHNAFRFLDKYRDKYCTF 182 (513)
Q Consensus 103 gi~~~p~~gL~I~I~d~g~~~~vl~d~ttnne~L~dplY~g~~~~~v~~a~~~~~~qFEDF~~~NAfrlLerYR~~~~~F 182 (513)
+..|+.|+|+++++.|+++...++.+|+
T Consensus 102 s~i~~~p~g~yis~~d~~~i~~~l~n~~---------------------------------------------------- 129 (555)
T 1gq2_A 102 GLAFRRPRGLFITIHDRGHIATMLQSWP---------------------------------------------------- 129 (555)
T ss_dssp HHHCSSCCSEEEEGGGTTCHHHHHHTSS----------------------------------------------------
T ss_pred HHHhcChhhhhcccCCHHHHHHHHhcCC----------------------------------------------------
Confidence 9889999999999999998888877773
Q ss_pred ccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCCCceEEEeeCCCCCCcccCCeeeccCCCcceeeccccchheecc
Q psy14380 183 NDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGEGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIAT 262 (513)
Q Consensus 183 NDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPGIgLGai~s 262 (513)
T Consensus 130 -------------------------------------------------------------------------------- 129 (555)
T 1gq2_A 130 -------------------------------------------------------------------------------- 129 (555)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCCcCcccchheeehhccCCCCCceeceeeecCCCccccccCcc
Q psy14380 263 GIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDPL 342 (513)
Q Consensus 263 ~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g~~~~vgKlsl~~A~agI~~a~~~p~~~~~~~~~~~~~~d~~ 342 (513)
.+.+. .+|||||++||||||+|++||+|||||++||++||||+|++|||||||+||||++||+||+
T Consensus 130 -------------~~~~~-v~VVTDG~~ILGLGD~G~~g~~ipvGKl~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~Dpl 195 (555)
T 1gq2_A 130 -------------ESVIK-AIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPL 195 (555)
T ss_dssp -------------CSCCC-EEEEECSSSCGGGCCCGGGGGHHHHHHHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTT
T ss_pred -------------CCCcE-EEEEEccccccccCCCCCCccccchhHHHHhHhccCCChhheeeeEeecCCCchhhcCCCc
Confidence 12232 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCChhhHHHHHHHHHHHHHHhhcccccccccccCCccchhhcccccCceeeeecCCCcccccccCcccccccc
Q psy14380 343 YVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQ 422 (513)
Q Consensus 343 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (513)
|+|+||+|.+|++||+|+||||++|+++|
T Consensus 196 YlG~r~~Rv~g~eyd~fvdefv~av~~~f--------------------------------------------------- 224 (555)
T 1gq2_A 196 YIGLRHKRIRGQAYDDLLDEFMEAVTSRY--------------------------------------------------- 224 (555)
T ss_dssp CCSCSSCCCCTHHHHHHHHHHHHHHHHHH---------------------------------------------------
T ss_pred cCCcCCCCCchHHHHHHHHHHHHHHHHhh---------------------------------------------------
Confidence 99999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHHHHHhhcCCceeeeeccCCCccHHHHHHHhhccCCeeccCCccHHHHHHHHHHHHHHHhCCcCC
Q psy14380 423 KRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKIS 502 (513)
Q Consensus 423 ~~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~~~~l~~~~~~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~ 502 (513)
||+++||||||+++|||++|+|||+++|||||||||||+|++|||++|+|++||+|+
T Consensus 225 -----------------------Gp~~~I~~EDf~~~~af~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~ 281 (555)
T 1gq2_A 225 -----------------------GMNCLIQFEDFANANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLS 281 (555)
T ss_dssp -----------------------CTTCEEEECSCCHHHHHHHHHHHTTTSEEEETTTHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred -----------------------CCCcEEeecccCCccHHHHHHHHhccCCEecCccchHHHHHHHHHHHHHHHhCCChh
Confidence 599999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEeccCC
Q psy14380 503 ECRFLFLGAGE 513 (513)
Q Consensus 503 ~~~~~~~gag~ 513 (513)
|+||||+|||+
T Consensus 282 d~riv~~GAGa 292 (555)
T 1gq2_A 282 DHTVLFQGAGE 292 (555)
T ss_dssp GCCEEEECCSH
T ss_pred hcEEEEECCCH
Confidence 99999999995
No 6
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*
Probab=100.00 E-value=1.1e-64 Score=543.38 Aligned_cols=265 Identities=58% Similarity=1.003 Sum_probs=233.3
Q ss_pred Ccccccceeeccchhhhhhh-hhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhccccccCEEEcCchhhhhhhc
Q psy14380 24 NVEELMPIVYTPTVGLACQK-SEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTVGLACQKF 102 (513)
Q Consensus 24 hleEllPIVYTPTVGeACQ~-ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~i~~IVVTDG~Gig~~g~ 102 (513)
+|.-|||-... |.-+-+++ |..+.+++. ...++ .|..+++|+++.+||+++.+++++.++|++|+|+|.+|+.+
T Consensus 63 ~L~GLLPp~v~-t~e~Q~~r~~~~~~~~~~--~l~k~--~~L~~L~~~Ne~Lfyrll~~~~~e~lpivYTPtVg~ac~~~ 137 (605)
T 1o0s_A 63 GLHGLLPPAFM-TQEQQAYRVITKLREQPN--DLARY--IQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNF 137 (605)
T ss_dssp TCTTTSCSCCC-CHHHHHHHHHHHHHHSSS--HHHHH--HHHHHHHHHCHHHHHHHHHHTHHHHHHHHSTTHHHHHHHHH
T ss_pred CCCcCCCCCcC-CHHHHHHHHHHHHHcCCC--cHHHH--HHHHHhhcccchhhhhhhhhCHHHhCCeeeCccHHHHHHHH
Confidence 46778875332 44444444 444333221 12232 45578899999999999999999999999999999999999
Q ss_pred cccccCCCeeEEeecCC--cchHHHhhccCCCccccccccchhhhHHHHHHHHHhhccccccCCccchHHHHHHhcccCc
Q psy14380 103 GLIFRRPRGLFITIHDK--GHCFDLLKNWTITNEVIRDKIKMTKVTKKIQEQRLQWYGHFEDFGNHNAFRFLDKYRDKYC 180 (513)
Q Consensus 103 gi~~~p~~gL~I~I~d~--g~~~~vl~d~ttnne~L~dplY~g~~~~~v~~a~~~~~~qFEDF~~~NAfrlLerYR~~~~ 180 (513)
+..|+.|+|+++++.|+ +....++.+|+
T Consensus 138 s~i~r~p~g~yis~~d~~~~~i~~~l~n~~-------------------------------------------------- 167 (605)
T 1o0s_A 138 GYIYRKPKGLYITINDNSVSKIYQILSNWH-------------------------------------------------- 167 (605)
T ss_dssp CSCCCCCCSEEEEGGGCSHHHHHHHHTTSS--------------------------------------------------
T ss_pred HHHhcChHhhhccccCcccchHHHHHhcCC--------------------------------------------------
Confidence 98899999999999988 87777777773
Q ss_pred ccccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCCCceEEEeeCCCCCCcccCCeeeccCCCcceeeccccchhee
Q psy14380 181 TFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGEGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVI 260 (513)
Q Consensus 181 ~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPGIgLGai 260 (513)
T Consensus 168 -------------------------------------------------------------------------------- 167 (605)
T 1o0s_A 168 -------------------------------------------------------------------------------- 167 (605)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCCcCcccchheeehhccCCCCCceeceeeecCCCccccccC
Q psy14380 261 ATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKD 340 (513)
Q Consensus 261 ~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g~~~~vgKlsl~~A~agI~~a~~~p~~~~~~~~~~~~~~d 340 (513)
.+.+. .+|||||+|||||||+|++||+|||||++||++||||+|++|||||||+||||++||+|
T Consensus 168 ---------------~~~~~-v~VVTDG~~ILGLGD~G~~g~~ipvGKl~Ly~~~aGIdP~~~lPI~LDvGTnne~LL~D 231 (605)
T 1o0s_A 168 ---------------EEDVR-AIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLND 231 (605)
T ss_dssp ---------------CSCCC-EEEEECSSCBTTTBCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCHHHHHC
T ss_pred ---------------CCCce-EEEEEccccceecCCCCCCcCcceeeHHHHHHhccCCChhheeeeEeccCCChhhhccC
Confidence 22333 47999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHhhcccccccccccCCccchhhcccccCceeeeecCCCcccccccCcccccc
Q psy14380 341 PLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGL 420 (513)
Q Consensus 341 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (513)
|+|+|+||+|.+|++||+|+||||++|+++|
T Consensus 232 PlYlG~r~~Rv~g~~Yd~fvdefv~av~~~f------------------------------------------------- 262 (605)
T 1o0s_A 232 PFYIGLRHKRVRGKDYDTLLDNFMKACTKKY------------------------------------------------- 262 (605)
T ss_dssp TTCCSCSSCCCCSHHHHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred CcccCcCCCCCChHHHHHHHHHHHHHHHHHh-------------------------------------------------
Confidence 9999999999999999999999999999999
Q ss_pred cccccccchhhHHHHHHHHHHHhhcCCceeeeeccCCCccHHHHHHHhhccCCeeccCCccHHHHHHHHHHHHHHHhCCc
Q psy14380 421 RQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKK 500 (513)
Q Consensus 421 ~~~~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~~~~l~~~~~~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~ 500 (513)
||+++||||||+++|||++|+|||+++|||||||||||+|++|||++|+|++||+
T Consensus 263 -------------------------Gp~~~I~~EDf~~p~af~il~ryr~~ipvFnDDiqGTA~V~lAgllnAlki~gk~ 317 (605)
T 1o0s_A 263 -------------------------GQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKL 317 (605)
T ss_dssp -------------------------CTTCEEEECSCCHHHHHHHHHHHTTTSEEEEHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred -------------------------CCCcEeeHhhcCCccHHHHHHHhccCCCeeCcccchHHHHHHHHHHHHHHHhCCC
Confidence 5999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEeccCC
Q psy14380 501 ISECRFLFLGAGE 513 (513)
Q Consensus 501 ~~~~~~~~~gag~ 513 (513)
|+|+||||+|||+
T Consensus 318 l~d~riv~~GAGa 330 (605)
T 1o0s_A 318 VSQEKYLFFGAGA 330 (605)
T ss_dssp GGGCCEEEECCSH
T ss_pred hhhcEEEEECCCH
Confidence 9999999999995
No 7
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}
Probab=100.00 E-value=8.2e-51 Score=427.32 Aligned_cols=248 Identities=23% Similarity=0.283 Sum_probs=192.8
Q ss_pred cccceeeccchhhhhhhhhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhccccccCEEEcCch---hhhhhhc-
Q psy14380 27 ELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTV---GLACQKF- 102 (513)
Q Consensus 27 EllPIVYTPTVGeACQ~ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~i~~IVVTDG~---Gig~~g~- 102 (513)
+=|||+||||||++|++++.- + ++++++..+|.. .||||||. |+|+.|.
T Consensus 59 ~dLslaYTPgVa~~c~~i~~d----------------------p--~~~~~yt~kgn~---VaVVTDG~aILGLGDiG~~ 111 (487)
T 3nv9_A 59 NWFNAYYTPGVSRISTNIRDN----------------------N--DSSLFYSLRGNF---VGVVSDSTRVLGDGDVTPP 111 (487)
T ss_dssp GGHHHHSTTTHHHHHHHHHHC----------------------G--GGHHHHSGGGGE---EEEEECSSSBGGGBCCCGG
T ss_pred HHCeeeeCcchHHHHHHHHhC----------------------h--HHHhhhcccCCE---EEEEEcCceeeeccccccc
Confidence 558999999999999987531 1 134555555554 49999993 5544443
Q ss_pred ---ccc------ccC---CCeeEEeecCCcchHHHhhccCCCccccccccchhhhHHHHHHHHHhh-ccccccCCccchH
Q psy14380 103 ---GLI------FRR---PRGLFITIHDKGHCFDLLKNWTITNEVIRDKIKMTKVTKKIQEQRLQW-YGHFEDFGNHNAF 169 (513)
Q Consensus 103 ---gi~------~~p---~~gL~I~I~d~g~~~~vl~d~ttnne~L~dplY~g~~~~~v~~a~~~~-~~qFEDF~~~NAf 169 (513)
+++ |+. -..+||++ |.+ |++ .+.| ...+.+.+.+..+++ ..|||||+++|||
T Consensus 112 agmpImeGKl~Lyk~~aGId~lPI~L-D~g----------t~~-~~~d---~defve~v~~~~P~fG~InlEDf~ap~af 176 (487)
T 3nv9_A 112 GGLGVMEGKALLMKYLGGIDAVPICI-DSK----------NKE-GKND---PDAVIEFVQRIQHTFGAINLEDISQPNCY 176 (487)
T ss_dssp GGHHHHHHHHHHHHHHHCCEEEEEEC-CCB----------CTT-SCBC---HHHHHHHHHHHGGGCSEEEECSCCTTHHH
T ss_pred cCCchhhhHHHHHHhcCCCceeeeEE-eCC----------Ccc-ccCC---HHHHHHHHHHhCCCCCeecHhhcCCchHH
Confidence 222 111 12566666 343 333 2222 233444444555565 3499999999999
Q ss_pred HHHHHhcc--cCcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC----------------------------
Q psy14380 170 RFLDKYRD--KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG---------------------------- 219 (513)
Q Consensus 170 rlLerYR~--~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG---------------------------- 219 (513)
++|+|||+ .+|||||||||||+|+|||++||+|++|++|+||||||+|||
T Consensus 177 ~il~ryr~~~~ipvFnDD~qGTA~V~lAgllnAlki~gk~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gl 256 (487)
T 3nv9_A 177 KILDVLRESCDIPVWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGS 256 (487)
T ss_dssp HHHHHHHHHCSSCEEETTTHHHHHHHHHHHHHHHHHHTCCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEE
T ss_pred HHHHHHHhhccCCccccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEecccc
Confidence 99999999 589999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------CceEEEeeCCCCCCccc-
Q psy14380 220 --------------------------------------------------------------EGRCIFASGSPFPPVKM- 236 (513)
Q Consensus 220 --------------------------------------------------------------~GkalfAsGSPfp~V~~- 236 (513)
+..+|||...|-|++++
T Consensus 257 i~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S~~~pg~ft~e~V~~Ma~~PIIFaLSNPtpEi~pe 336 (487)
T 3nv9_A 257 LHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLSTPGPGVVKAEWIKSMGEKPIVFCCANPVPEIYPY 336 (487)
T ss_dssp CCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECCCSSCCCCCHHHHHTSCSSCEEEECCSSSCSSCHH
T ss_pred ccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEecccCCCCCCHHHHHhhcCCCEEEECCCCCccCCHH
Confidence 34789999999887764
Q ss_pred -----------CCeeeccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCCcCcc
Q psy14380 237 -----------ETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIP 305 (513)
Q Consensus 237 -----------~Gk~y~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g~~~~ 305 (513)
.|+.++||||||+|+|||||+|++.++|++|||+|+.+||+++ |.++++.+ ++-|-+.|+-.-
T Consensus 337 ~A~~~G~aIvATGrsd~PnQ~NN~liFPGI~~Gal~~~A~~Itd~M~~AAA~AL--A~~v~~~~--l~~~~i~P~~~d-- 410 (487)
T 3nv9_A 337 EAKEAGAYIVATGRGDFPNQVNNSVGFPGILKGALIVRARKITDNMAIAASRAL--AEFAEKRG--INPDNIIGTMDE-- 410 (487)
T ss_dssp HHHHTTCSEEEESCTTSSSBCCGGGTHHHHHHHHHHTTCSSCCHHHHHHHHHHH--HHHHHHTC--CBTTBCSCCTTC--
T ss_pred HHHHhCCEEEEECCCCCcccCcceeEcchhhHHHHHcCCcccCHHHHHHHHHHH--HhhCCccc--CCCCceeCCccc--
Confidence 5788999999999999999999999999999999999999997 88998876 677778777444
Q ss_pred cchheeehhccCCCCCce
Q psy14380 306 VGKLSLYTALAGIKPHQC 323 (513)
Q Consensus 306 vgKlsl~~A~agI~~a~~ 323 (513)
.+++..+|.++...|+-
T Consensus 411 -~~Vs~~VA~AVa~aA~~ 427 (487)
T 3nv9_A 411 -PGIFPKEAADVAMQAIK 427 (487)
T ss_dssp -TTHHHHHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHHH
Confidence 47888888888886543
No 8
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=100.00 E-value=1.1e-48 Score=405.59 Aligned_cols=238 Identities=23% Similarity=0.302 Sum_probs=191.6
Q ss_pred ccccceeeccchhhhhhhhhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhccccccCEEEcCch---hhhhhhc
Q psy14380 26 EELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTV---GLACQKF 102 (513)
Q Consensus 26 eEllPIVYTPTVGeACQ~ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~i~~IVVTDG~---Gig~~g~ 102 (513)
.|+|||+||||||++||+|+. |+. .++++..++.+ .+|||||. |+|+.|.
T Consensus 33 ~~~l~i~YtP~V~~~c~~i~~----------------------~p~--~v~~~t~~~~~---V~VvTdG~~iLGLGD~G~ 85 (398)
T 2a9f_A 33 KHDLSIAYTPGVASVSSAIAK----------------------DKT--LAYDLTTKKNT---VAVISDGTAVLGLGDIGP 85 (398)
T ss_dssp HHHHHHHSTTTTHHHHHHHHH----------------------CGG--GHHHHSGGGTE---EEEEECSSSCTTSCCCCH
T ss_pred HHHCeEEECchHHHHHHHHHh----------------------CHH--HHHHhcccCCE---EEEEECCccccCCCCccc
Confidence 678999999999999999753 111 24556555555 49999983 5444433
Q ss_pred ----ccc------ccC---CCeeEEeecCCcchHHHhhccCCCccccccccchhhhHHHH-HHHHHhhc----cccccCC
Q psy14380 103 ----GLI------FRR---PRGLFITIHDKGHCFDLLKNWTITNEVIRDKIKMTKVTKKI-QEQRLQWY----GHFEDFG 164 (513)
Q Consensus 103 ----gi~------~~p---~~gL~I~I~d~g~~~~vl~d~ttnne~L~dplY~g~~~~~v-~~a~~~~~----~qFEDF~ 164 (513)
.++ |.. -..+||++ |++ + .+|+ ..++..++ .|||||+
T Consensus 86 ~aG~pI~eGK~~Lf~~~agid~~pi~L-dv~----------~--------------~dEfv~~v~~~~p~F~~I~lED~~ 140 (398)
T 2a9f_A 86 EAAMPVMEGKAALFKAFAGVDAIPIVL-DTK----------D--------------TEEIISIVKALAPTFGGINLEDIS 140 (398)
T ss_dssp HHHHHHHHHHHHHHHHHSSCEEEEEEC-CCC----------C--------------HHHHHHHHHHHGGGCSEEEECSCC
T ss_pred ccCCcchhCHHHHHHhccCCceeeeEe-CCC----------C--------------HHHHHHHHHHcCCceeEeccccCC
Confidence 222 221 12456666 344 1 3444 44444443 3999999
Q ss_pred ccchHHHHHHhccc--CcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC-----------------------
Q psy14380 165 NHNAFRFLDKYRDK--YCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG----------------------- 219 (513)
Q Consensus 165 ~~NAfrlLerYR~~--~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG----------------------- 219 (513)
++|||++|+|||++ +|||||||||||+|+|||+++|+|++|++++|+||||+|||
T Consensus 141 ~p~~f~il~~~r~~~~ipvf~DDiqGTa~V~lAall~al~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~ 220 (398)
T 2a9f_A 141 APRCFEIEQRLIKECHIPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDK 220 (398)
T ss_dssp TTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHTTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEET
T ss_pred ChHHHHHHHHhhhcCCcceecchhhhHHHHHHHHHHHHHHHhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEEC
Confidence 99999999999997 99999999999999999999999999999999999999999
Q ss_pred ------------------------------------------------------------CceEEEeeCCCCCCccc---
Q psy14380 220 ------------------------------------------------------------EGRCIFASGSPFPPVKM--- 236 (513)
Q Consensus 220 ------------------------------------------------------------~GkalfAsGSPfp~V~~--- 236 (513)
++.+||+...|-|++++
T Consensus 221 ~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~Sapgl~T~EmVk~Ma~~pIIfalsNPt~E~~pe~a 300 (398)
T 2a9f_A 221 FGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVSAPGVLKAEWISKMAARPVIFAMANPIPEIYPDEA 300 (398)
T ss_dssp TEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECCSTTCCCHHHHHTSCSSCEEEECCSSSCSSCHHHH
T ss_pred CCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecCCCCCCCHHHHHhhCCCCEEEECCCCCccCCHHHH
Confidence 69999999999988764
Q ss_pred ---------CCeeeccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCCCCcCcccc
Q psy14380 237 ---------ETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVG 307 (513)
Q Consensus 237 ---------~Gk~y~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~~g~~~~vg 307 (513)
.|++++|||+||+|+|||||+|++.+++++|||+|+.+||+++ |.++++++ ++-|-+.|+-.. +
T Consensus 301 ~~~g~~i~atGrs~~p~Q~NN~~~FPgi~~Gal~~~a~~I~d~m~~aAa~al--A~~~~~~~--~~~~~i~P~~~~---~ 373 (398)
T 2a9f_A 301 LEAGAYIVGTGRSDFPNQINNVLAFPGIFRGALDARAKTITVEMQIAAAKGI--ASLVPDDA--LSTTNIIPDAFK---E 373 (398)
T ss_dssp HTTTCSEEEESCTTSSSBCCGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHH--HHTCSSCS--SCCSCCSCSSTT---H
T ss_pred HHhCCeEEEeCCCCCCCcCCceeEcchHHHHHHHcCCcCCCHHHHHHHHHHH--HhcCCccc--CCCCccCCCCCc---c
Confidence 6899999999999999999999999999999999999999997 88998876 666777776433 7
Q ss_pred hheeehhccCCCCCc
Q psy14380 308 KLSLYTALAGIKPHQ 322 (513)
Q Consensus 308 Klsl~~A~agI~~a~ 322 (513)
+++..+|.++...|+
T Consensus 374 ~v~~~VA~aVa~~A~ 388 (398)
T 2a9f_A 374 GVAEIVAKSVRSVVL 388 (398)
T ss_dssp HHHHHHTTTTCCCCC
T ss_pred hhHHHHHHHHHHHHH
Confidence 899999999998765
No 9
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=100.00 E-value=2.4e-45 Score=379.86 Aligned_cols=240 Identities=24% Similarity=0.291 Sum_probs=183.0
Q ss_pred hHHHHHhhCcccccceeeccchhhhhhhhhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhccccccCEEEcCch
Q psy14380 16 LFFRLLSENVEELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTV 95 (513)
Q Consensus 16 LFYrLL~~hleEllPIVYTPTVGeACQ~ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~i~~IVVTDG~ 95 (513)
.++++..++. |+|||+||||||++||+|+. . + +.++++..++.+ .+|||||.
T Consensus 28 ~~~~~~~~~~-~~l~i~YtP~V~~~c~~~~~---~-------------------p--~~v~~~t~~~~~---V~VvTdg~ 79 (388)
T 1vl6_A 28 TALPVEKVDR-ETLSLLYTPGVADVARACAE---D-------------------P--EKTYVYTSRWNT---VAVVSDGS 79 (388)
T ss_dssp EECSCSCCCH-HHHHHHSTTTHHHHHHHHHH---C-------------------G--GGHHHHSGGGGE---EEEEECST
T ss_pred EEEeeecCCH-HHCeEEECchHHHHHHHHHh---C-------------------H--HHHHhhcccCCe---EEEEECCc
Confidence 4455556664 55899999999999999751 1 1 124455555555 49999983
Q ss_pred ---hhhhhhc----ccc------ccC---CCeeEEeecCCcchHHHhhccCCCccccccccchhhhHHHH-HHHHHhhc-
Q psy14380 96 ---GLACQKF----GLI------FRR---PRGLFITIHDKGHCFDLLKNWTITNEVIRDKIKMTKVTKKI-QEQRLQWY- 157 (513)
Q Consensus 96 ---Gig~~g~----gi~------~~p---~~gL~I~I~d~g~~~~vl~d~ttnne~L~dplY~g~~~~~v-~~a~~~~~- 157 (513)
|+|+.|. .++ |+. -..+||++ |++ + .+|+ ..++..++
T Consensus 80 ~vLGlGD~G~~ag~pI~egK~~Lf~~~agid~~pi~l-dv~----------~--------------~dE~v~~vk~~~p~ 134 (388)
T 1vl6_A 80 AVLGLGNIGPYGALPVMEGKAFLFKAFADIDAFPICL-SES----------E--------------EEKIISIVKSLEPS 134 (388)
T ss_dssp TBTTTBSCCHHHHHHHHHHHHHHHHHHHCCEEEEEEC-SCC----------C--------------HHHHHHHHHHTGGG
T ss_pred cccCCCccccccCCcchhCHHHHHHhccCCceEeEEe-CCC----------C--------------HHHHHHHHHHcCCc
Confidence 5544443 221 111 12456666 344 1 3444 44444442
Q ss_pred ---cccccCCccchHHHHHHhccc--CcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC-------------
Q psy14380 158 ---GHFEDFGNHNAFRFLDKYRDK--YCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG------------- 219 (513)
Q Consensus 158 ---~qFEDF~~~NAfrlLerYR~~--~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG------------- 219 (513)
.|||||+++|||++|+|||++ +||||||||||++|++||+++|++++|++++++|+||+|||
T Consensus 135 f~~i~lED~~~p~af~il~r~r~~~~Ipvf~DDiqGTasV~lAal~~A~~i~g~~l~~~kVVv~GAGaAG~~iAkll~~~ 214 (388)
T 1vl6_A 135 FGGINLEDIGAPKCFRILQRLSEEMNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDL 214 (388)
T ss_dssp CSEEEECSCCTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHH
T ss_pred ceEeCHhhcCCHHHHHHHHHhhhhcCcceeccccccHHHHHHHHHHHHHHHhCCCCCCcEEEEECCCHHHHHHHHHHHhC
Confidence 399999999999999999996 99999999999999999999999999999999999999999
Q ss_pred -----------------------------------------------------------------------CceEEEeeC
Q psy14380 220 -----------------------------------------------------------------------EGRCIFASG 228 (513)
Q Consensus 220 -----------------------------------------------------------------------~GkalfAsG 228 (513)
++.+||+..
T Consensus 215 G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~Sap~l~t~emVk~Ma~~pIIfalS 294 (388)
T 1vl6_A 215 GVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNILKPEWIKKMSRKPVIFALA 294 (388)
T ss_dssp TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSCSSCSCHHHHTTSCSSCEEEECC
T ss_pred CCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEEeCCCCccCHHHHHhcCCCCEEEEcC
Confidence 477999999
Q ss_pred CCCCCccc------------CCeeeccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCC
Q psy14380 229 SPFPPVKM------------ETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGD 296 (513)
Q Consensus 229 SPfp~V~~------------~Gk~y~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gD 296 (513)
.|-|++++ .|++++|||+||+|+|||||+|++.++++ |||+|+.+||+++ |.++ + ++-|-
T Consensus 295 NPt~E~~p~~a~~~g~~i~atGr~~~p~Q~NN~~~FPgi~~Gal~~~a~-i~~~m~~aAa~al--A~~~---~--~~~~~ 366 (388)
T 1vl6_A 295 NPVPEIDPELAREAGAFIVATGRSDHPNQVNNLLAFPGIMKGAVEKRSK-ITKNMLLSAVEAI--ARSC---E--PEPER 366 (388)
T ss_dssp SSSCSSCHHHHHHTTCSEEEESCTTSSSBCCGGGTHHHHHHHHHHHCSC-CCHHHHHHHHHHH--HHTS---C--CBTTB
T ss_pred CCCCCCCHHHHHHhcCeEEEeCCCCCCCcCCceeEcchHhHHHHhcCCc-cCHHHHHHHHHHH--Hhhh---c--cCCCc
Confidence 99988764 68999999999999999999999999999 9999999999997 6676 1 34455
Q ss_pred CCCCCcCcccchheeehhccCCC
Q psy14380 297 LGACGMGIPVGKLSLYTALAGIK 319 (513)
Q Consensus 297 lG~~g~~~~vgKlsl~~A~agI~ 319 (513)
+.|+-.. ++++..+|.++..
T Consensus 367 i~P~~~~---~~v~~~vA~aVa~ 386 (388)
T 1vl6_A 367 IIPEAFD---MKVHLNVYTAVKG 386 (388)
T ss_dssp SSCCTTC---HHHHHHHHHHHHH
T ss_pred ccCCCCc---chhhHHHHHHHHh
Confidence 5554222 6777777766554
No 10
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}
Probab=100.00 E-value=4.4e-44 Score=376.38 Aligned_cols=183 Identities=34% Similarity=0.593 Sum_probs=163.4
Q ss_pred CceEEEeeCCCCCCcccCCeeeccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCC
Q psy14380 220 EGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGA 299 (513)
Q Consensus 220 ~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~ 299 (513)
.||+-+.+..|.....+....| +|||| ..|..+.+.|+..+.++.+++.+ +|||||+|||||||+|+
T Consensus 44 ~GKi~v~~~~~~~~~~dLslaY----------TPgVa--~~c~~i~~dp~~~~~yt~kgn~V-aVVTDG~aILGLGDiG~ 110 (487)
T 3nv9_A 44 KGKIQIMPKCTLAGFNWFNAYY----------TPGVS--RISTNIRDNNDSSLFYSLRGNFV-GVVSDSTRVLGDGDVTP 110 (487)
T ss_dssp TSSEEEEECSCCSSGGGHHHHS----------TTTHH--HHHHHHHHCGGGHHHHSGGGGEE-EEEECSSSBGGGBCCCG
T ss_pred CCeEEEEecCCCCCHHHCeeee----------CcchH--HHHHHHHhChHHHhhhcccCCEE-EEEEcCceeeecccccc
Confidence 4899999999999998888888 78888 78889999999999999999976 79999999999999999
Q ss_pred -CCcCcccchheeehhccCCCCCceeceeeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhhccccccc
Q psy14380 300 -CGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQ 378 (513)
Q Consensus 300 -~g~~~~vgKlsl~~A~agI~~a~~~p~~~~~~~~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (513)
.|||||+||++||++||||+ |||||||+||++ +++|| |+|+ |+|+++.
T Consensus 111 ~agmpImeGKl~Lyk~~aGId---~lPI~LD~gt~~--~~~d~---------------defv-e~v~~~~---------- 159 (487)
T 3nv9_A 111 PGGLGVMEGKALLMKYLGGID---AVPICIDSKNKE--GKNDP---------------DAVI-EFVQRIQ---------- 159 (487)
T ss_dssp GGGHHHHHHHHHHHHHHHCCE---EEEEECCCBCTT--SCBCH---------------HHHH-HHHHHHG----------
T ss_pred ccCCchhhhHHHHHHhcCCCc---eeeeEEeCCCcc--ccCCH---------------HHHH-HHHHHhC----------
Confidence 59999999999999999999 999999999754 34555 4444 3444444
Q ss_pred ccccCCccchhhcccccCceeeeecCCCcccccccCcccccccccccccchhhHHHHHHHHHHHhhcCCceeeeeccCCC
Q psy14380 379 FEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGN 458 (513)
Q Consensus 379 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~ 458 (513)
|+||. ||||||++
T Consensus 160 ----------------------------------------------------------------P~fG~---InlEDf~a 172 (487)
T 3nv9_A 160 ----------------------------------------------------------------HTFGA---INLEDISQ 172 (487)
T ss_dssp ----------------------------------------------------------------GGCSE---EEECSCCT
T ss_pred ----------------------------------------------------------------CCCCe---ecHhhcCC
Confidence 44454 99999999
Q ss_pred ccHHHHHHHhhc--cCCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccCC
Q psy14380 459 HNAFRFLDKYRD--KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513 (513)
Q Consensus 459 ~~~~~~l~~~~~--~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag~ 513 (513)
+|||++|+|||+ ++|||||||||||+|++|||++|+|++||+|+|+||||+|||+
T Consensus 173 p~af~il~ryr~~~~ipvFnDD~qGTA~V~lAgllnAlki~gk~l~d~riV~~GAGa 229 (487)
T 3nv9_A 173 PNCYKILDVLRESCDIPVWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGS 229 (487)
T ss_dssp THHHHHHHHHHHHCSSCEEETTTHHHHHHHHHHHHHHHHHHTCCGGGCCEEEECCSH
T ss_pred chHHHHHHHHHhhccCCccccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCH
Confidence 999999999999 5799999999999999999999999999999999999999995
No 11
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=100.00 E-value=4.6e-38 Score=326.23 Aligned_cols=177 Identities=25% Similarity=0.444 Sum_probs=163.5
Q ss_pred CceEEEeeCCCCCCcccCCeeeccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCC
Q psy14380 220 EGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGA 299 (513)
Q Consensus 220 ~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~ 299 (513)
.||+-+.+..|....+.....| +|||| ..|.++.+.|+.++.++.+.+.+ .|||||++||||||+|+
T Consensus 19 ~gk~~~~~~~~~~~~~~l~i~Y----------tP~V~--~~c~~i~~~p~~v~~~t~~~~~V-~VvTdG~~iLGLGD~G~ 85 (398)
T 2a9f_A 19 GGKLEVQPKVDIKTKHDLSIAY----------TPGVA--SVSSAIAKDKTLAYDLTTKKNTV-AVISDGTAVLGLGDIGP 85 (398)
T ss_dssp TSSEEEEESSCCSSHHHHHHHS----------TTTTH--HHHHHHHHCGGGHHHHSGGGTEE-EEEECSSSCTTSCCCCH
T ss_pred CCeEEEEEecccCCHHHCeEEE----------CchHH--HHHHHHHhCHHHHHHhcccCCEE-EEEECCccccCCCCccc
Confidence 4899999999999888877788 78888 67788889999999999999866 79999999999999999
Q ss_pred C-CcCcccchheeehhccCCCCCceeceeeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhhccccccc
Q psy14380 300 C-GMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQ 378 (513)
Q Consensus 300 ~-g~~~~vgKlsl~~A~agI~~a~~~p~~~~~~~~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (513)
. ||+||+||+.+|+++|||+ |+||+||+|+ +||||+++++.|
T Consensus 86 ~aG~pI~eGK~~Lf~~~agid---~~pi~Ldv~~---------------------------~dEfv~~v~~~~------- 128 (398)
T 2a9f_A 86 EAAMPVMEGKAALFKAFAGVD---AIPIVLDTKD---------------------------TEEIISIVKALA------- 128 (398)
T ss_dssp HHHHHHHHHHHHHHHHHSSCE---EEEEECCCCC---------------------------HHHHHHHHHHHG-------
T ss_pred ccCCcchhCHHHHHHhccCCc---eeeeEeCCCC---------------------------HHHHHHHHHHcC-------
Confidence 8 9999999999999999999 9999999974 588888888887
Q ss_pred ccccCCccchhhcccccCceeeeecCCCcccccccCcccccccccccccchhhHHHHHHHHHHHhhcCCceeeeeccCCC
Q psy14380 379 FEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGN 458 (513)
Q Consensus 379 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~ 458 (513)
|+|| .||||||++
T Consensus 129 ----------------------------------------------------------------p~F~---~I~lED~~~ 141 (398)
T 2a9f_A 129 ----------------------------------------------------------------PTFG---GINLEDISA 141 (398)
T ss_dssp ----------------------------------------------------------------GGCS---EEEECSCCT
T ss_pred ----------------------------------------------------------------Ccee---EeccccCCC
Confidence 5555 599999999
Q ss_pred ccHHHHHHHhhcc--CCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccCC
Q psy14380 459 HNAFRFLDKYRDK--YCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513 (513)
Q Consensus 459 ~~~~~~l~~~~~~--~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag~ 513 (513)
+|||++|+|||++ +|+|||||||||+|++||+++|+|++|++++++||||+|||+
T Consensus 142 p~~f~il~~~r~~~~ipvf~DDiqGTa~V~lAall~al~l~g~~l~d~kVVi~GAGa 198 (398)
T 2a9f_A 142 PRCFEIEQRLIKECHIPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGS 198 (398)
T ss_dssp THHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHTTTCCTTSCEEEEECCSH
T ss_pred hHHHHHHHHhhhcCCcceecchhhhHHHHHHHHHHHHHHHhCCCCCccEEEEECCCH
Confidence 9999999999998 999999999999999999999999999999999999999994
No 12
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=100.00 E-value=1.5e-36 Score=314.25 Aligned_cols=177 Identities=29% Similarity=0.450 Sum_probs=162.6
Q ss_pred CceEEEeeCCCCCCcccCCeeeccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCC
Q psy14380 220 EGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGA 299 (513)
Q Consensus 220 ~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~ 299 (513)
.||+-+.+..|....+.....| +|||| ..|.++.+.|+.++.++.+.+.+ .|||||++||||||+|+
T Consensus 23 ~gk~~~~~~~~~~~~~~l~i~Y----------tP~V~--~~c~~~~~~p~~v~~~t~~~~~V-~VvTdg~~vLGlGD~G~ 89 (388)
T 1vl6_A 23 KGKIRTALPVEKVDRETLSLLY----------TPGVA--DVARACAEDPEKTYVYTSRWNTV-AVVSDGSAVLGLGNIGP 89 (388)
T ss_dssp TCSCEEECSCSCCCHHHHHHHS----------TTTHH--HHHHHHHHCGGGHHHHSGGGGEE-EEEECSTTBTTTBSCCH
T ss_pred CCeEEEEEeeecCCHHHCeEEE----------CchHH--HHHHHHHhCHHHHHhhcccCCeE-EEEECCccccCCCcccc
Confidence 4899999999998888877778 78888 56777889999999999998866 79999999999999999
Q ss_pred C-CcCcccchheeehhccCCCCCceeceeeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhhccccccc
Q psy14380 300 C-GMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQ 378 (513)
Q Consensus 300 ~-g~~~~vgKlsl~~A~agI~~a~~~p~~~~~~~~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (513)
. ||+||+||+.+|+++|||+ |+||+||+|+ +||||+++++.|
T Consensus 90 ~ag~pI~egK~~Lf~~~agid---~~pi~ldv~~---------------------------~dE~v~~vk~~~------- 132 (388)
T 1vl6_A 90 YGALPVMEGKAFLFKAFADID---AFPICLSESE---------------------------EEKIISIVKSLE------- 132 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHCCE---EEEEECSCCC---------------------------HHHHHHHHHHTG-------
T ss_pred ccCCcchhCHHHHHHhccCCc---eEeEEeCCCC---------------------------HHHHHHHHHHcC-------
Confidence 7 9999999999999999999 9999999974 588888888887
Q ss_pred ccccCCccchhhcccccCceeeeecCCCcccccccCcccccccccccccchhhHHHHHHHHHHHhhcCCceeeeeccCCC
Q psy14380 379 FEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGN 458 (513)
Q Consensus 379 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~ 458 (513)
|+|| .||||||++
T Consensus 133 ----------------------------------------------------------------p~f~---~i~lED~~~ 145 (388)
T 1vl6_A 133 ----------------------------------------------------------------PSFG---GINLEDIGA 145 (388)
T ss_dssp ----------------------------------------------------------------GGCS---EEEECSCCT
T ss_pred ----------------------------------------------------------------Ccce---EeCHhhcCC
Confidence 4555 599999999
Q ss_pred ccHHHHHHHhhcc--CCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccCC
Q psy14380 459 HNAFRFLDKYRDK--YCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513 (513)
Q Consensus 459 ~~~~~~l~~~~~~--~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag~ 513 (513)
+|||++|+|||++ +|+|||||||||+|++||+++|++++|++++++|+||+|||+
T Consensus 146 p~af~il~r~r~~~~Ipvf~DDiqGTasV~lAal~~A~~i~g~~l~~~kVVv~GAGa 202 (388)
T 1vl6_A 146 PKCFRILQRLSEEMNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGA 202 (388)
T ss_dssp THHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHHHTCCTTTCEEEEECCSH
T ss_pred HHHHHHHHHhhhhcCcceeccccccHHHHHHHHHHHHHHHhCCCCCCcEEEEECCCH
Confidence 9999999999997 899999999999999999999999999999999999999995
No 13
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*
Probab=99.97 E-value=2.3e-32 Score=286.92 Aligned_cols=245 Identities=26% Similarity=0.358 Sum_probs=175.1
Q ss_pred HHHHHhhCcccccceeeccchhhhhhhhhhHhhhcccccccccceeeecCCCCchHHHHHHHhhhccccccCEEEcCch-
Q psy14380 17 FFRLLSENVEELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPLDRNERLFFRLLSENVEELMPIVYTPTV- 95 (513)
Q Consensus 17 FYrLL~~hleEllPIVYTPTVGeACQ~ys~i~rys~~~~~~~~~~~~~is~~Drg~~~~~~~l~~~~~~i~~IVVTDG~- 95 (513)
++++..++ .|+|||+||||||++||+|++ |++ .++++..+|.. .+|||||.
T Consensus 23 ~~~~~~~~-~~~l~~~YtP~v~~~c~~~~~----------------------~~~--~~~~~~~~~~~---v~vvtdgt~ 74 (439)
T 2dvm_A 23 IPKVSLES-REELTLAYTPGVAEPCKEIAR----------------------DPG--KVYEYTSKGNL---VAVVSDGSR 74 (439)
T ss_dssp EESSCCCS-HHHHHHHSTTTTHHHHHHHHH----------------------CGG--GHHHHSSGGGE---EEEEECSTT
T ss_pred EEeeccCC-HHHCeeEECchhHHHHHHHHH----------------------CHH--HHHhhcccCcE---EEEEECCCe
Confidence 34444444 567899999999999999753 111 25556556555 49999984
Q ss_pred --hhhhhhcc--cc--------ccC---CCeeEEeecCCcchHHHhhccCCCccccccccchhhhHHHHHHH----HHhh
Q psy14380 96 --GLACQKFG--LI--------FRR---PRGLFITIHDKGHCFDLLKNWTITNEVIRDKIKMTKVTKKIQEQ----RLQW 156 (513)
Q Consensus 96 --Gig~~g~g--i~--------~~p---~~gL~I~I~d~g~~~~vl~d~ttnne~L~dplY~g~~~~~v~~a----~~~~ 156 (513)
|+|+.|.. .+ |.. -..+|++++ +. -.+++.++ .+.+
T Consensus 75 ilGlG~iG~hS~sPvmh~ka~lf~~~gGid~~yi~ld-v~------------------------d~de~~~~v~~l~~~f 129 (439)
T 2dvm_A 75 ILGLGNIGPLAGLPVMEGKALLFKRFGGVDAFPIMIK-EQ------------------------EPNKFIDIVKAIAPTF 129 (439)
T ss_dssp BTTTBCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECS-CC------------------------SHHHHHHHHHHTGGGC
T ss_pred EecccceeccccCHHHHHHHHHHHHhCCCCCeeeeee-cC------------------------CHHHHHHHHHHhCccC
Confidence 54343321 11 110 123455442 20 02333333 2333
Q ss_pred cc-ccccCCccchHHHHHHhcc--cCcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC------------Cc
Q psy14380 157 YG-HFEDFGNHNAFRFLDKYRD--KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG------------EG 221 (513)
Q Consensus 157 ~~-qFEDF~~~NAfrlLerYR~--~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG------------~G 221 (513)
-+ |||||+.+|++++|++|++ .+|+||||+||||++.+||+++|++.+|++++++|+||+||| .|
T Consensus 130 ~GinvED~T~P~k~~il~~l~~avNt~vf~dD~~gtgntd~aG~~~AL~~~g~~l~~~rvlvlGAGgAg~aia~~L~~~G 209 (439)
T 2dvm_A 130 GGINLEDIASPKCFYILERLREELDIPVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAGFATLRILTEAG 209 (439)
T ss_dssp SEEEECSCCTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEECCSHHHHHHHHHHHHTT
T ss_pred cEEEEEeCCCchHHHHHHHHHHhcCEEEEeCCCcEEeehHHHHHHHHHHHhCCCccCCEEEEECccHHHHHHHHHHHHcC
Confidence 23 9999999999999999998 489999999999999999999999999999999999999999 23
Q ss_pred ----eEEEee----CC----------------------------------------------CCC---------------
Q psy14380 222 ----RCIFAS----GS----------------------------------------------PFP--------------- 232 (513)
Q Consensus 222 ----kalfAs----GS----------------------------------------------Pfp--------------- 232 (513)
++.++. .+ |-+
T Consensus 210 ~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~aDVlInaT~~~~G~~~~e~v~~m~~~ 289 (439)
T 2dvm_A 210 VKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDADVLISFTRPGPGVIKPQWIEKMNED 289 (439)
T ss_dssp CCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTTCSEEEECSCCCSSSSCHHHHTTSCTT
T ss_pred CCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhccCCEEEEcCCCccCCCChHHHHhcCCC
Confidence 344433 11 110
Q ss_pred Cc---------c-------------c-CCeeeccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCc
Q psy14380 233 PV---------K-------------M-ETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGE 289 (513)
Q Consensus 233 ~V---------~-------------~-~Gk~y~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~ 289 (513)
++ + . +|+.+.|+|+||+|+|||||+|++.+++++|||+|+.+||+++ |.++++.
T Consensus 290 ~iVfDLynP~~t~~~~~A~~~G~~ivatG~~ml~~Q~nn~~~FPGi~~g~l~~~a~~i~~~m~~aaa~al--a~~~~~~- 366 (439)
T 2dvm_A 290 AIVFPLANPVPEILPEEAKKAGARIVATGRSDYPNQINNLLGFPGIFRGALDVRARTITDSMIIAAAKAI--ASIVEEP- 366 (439)
T ss_dssp CEEEECCSSSCSSCHHHHHHHTCSEECBSCSSSSSBCCGGGTHHHHHHHHHHTTCSCCCHHHHHHHHHHH--HHTSSSC-
T ss_pred CEEEECCCCCCcchHHHHHHcCCeEEcCCCchhHHHHHHHhcccCchHHHHhcCCCCCCHHHHHHHHHHH--HhhCccc-
Confidence 00 0 0 5778889999999999999999999999999999999999997 7888765
Q ss_pred eeeccCCCCCCCcCcccchheeehhccCCCCCce
Q psy14380 290 RILGLGDLGACGMGIPVGKLSLYTALAGIKPHQC 323 (513)
Q Consensus 290 ~Ilg~gDlG~~g~~~~vgKlsl~~A~agI~~a~~ 323 (513)
+-|-+.|+-.. ++++..+|.++...|+-
T Consensus 367 ---~~~~i~P~~~~---~~v~~~va~av~~~a~~ 394 (439)
T 2dvm_A 367 ---SEENIIPSPLN---PIVYAREARAVAEEAMK 394 (439)
T ss_dssp ---BTTBCSCCTTC---HHHHHHHHHHHHHHHHH
T ss_pred ---cCCccCCCccc---chhhHHHHHHHHHHHHH
Confidence 44556555322 78888888888875543
No 14
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*
Probab=99.91 E-value=1.2e-25 Score=236.03 Aligned_cols=177 Identities=33% Similarity=0.573 Sum_probs=157.1
Q ss_pred CceEEEeeCCCCCCcccCCeeeccCCCcceeeccccchheeccccccccHHHHHhhcCCCceeeeecCCceeeccCCCCC
Q psy14380 220 EGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGA 299 (513)
Q Consensus 220 ~GkalfAsGSPfp~V~~~Gk~y~pgQ~NN~yiFPGIgLGai~s~a~~Itd~m~~aAA~~l~~A~vVTdg~~Ilg~gDlG~ 299 (513)
.||+-+.+..|....+.....| +|||| ..|.++.+.|+.++.++.+.+.+ ++|||+++||||||+|+
T Consensus 17 ~gk~~~~~~~~~~~~~~l~~~Y----------tP~v~--~~c~~~~~~~~~~~~~~~~~~~v-~vvtdgt~ilGlG~iG~ 83 (439)
T 2dvm_A 17 NGKIEVIPKVSLESREELTLAY----------TPGVA--EPCKEIARDPGKVYEYTSKGNLV-AVVSDGSRILGLGNIGP 83 (439)
T ss_dssp SSSEEEEESSCCCSHHHHHHHS----------TTTTH--HHHHHHHHCGGGHHHHSSGGGEE-EEEECSTTBTTTBCCCH
T ss_pred CCEEEEEEeeccCCHHHCeeEE----------CchhH--HHHHHHHHCHHHHHhhcccCcEE-EEEECCCeEecccceec
Confidence 5899999999999888888888 78888 67888999999999999999866 79999999999999999
Q ss_pred C-CcCcccchheeehhccCCCCCceeceeeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhhccccccc
Q psy14380 300 C-GMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQ 378 (513)
Q Consensus 300 ~-g~~~~vgKlsl~~A~agI~~a~~~p~~~~~~~~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (513)
. ++|++.+|+.+|+++|||+ ++|+++|+ +|| |+|+++++..+
T Consensus 84 hS~sPvmh~ka~lf~~~gGid---~~yi~ldv--------~d~-------------------de~~~~v~~l~------- 126 (439)
T 2dvm_A 84 LAGLPVMEGKALLFKRFGGVD---AFPIMIKE--------QEP-------------------NKFIDIVKAIA------- 126 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHCCE---EEEEECSC--------CSH-------------------HHHHHHHHHTG-------
T ss_pred cccCHHHHHHHHHHHHhCCCC---Ceeeeeec--------CCH-------------------HHHHHHHHHhC-------
Confidence 6 8999999999999999999 99999999 343 55666555543
Q ss_pred ccccCCccchhhcccccCceeeeecCCCcccccccCcccccccccccccchhhHHHHHHHHHHHhhcCCceeeeeccCCC
Q psy14380 379 FEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGN 458 (513)
Q Consensus 379 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~ 458 (513)
+.|+ .+|||||+.
T Consensus 127 ----------------------------------------------------------------~~f~---GinvED~T~ 139 (439)
T 2dvm_A 127 ----------------------------------------------------------------PTFG---GINLEDIAS 139 (439)
T ss_dssp ----------------------------------------------------------------GGCS---EEEECSCCT
T ss_pred ----------------------------------------------------------------ccCc---EEEEEeCCC
Confidence 2333 399999999
Q ss_pred ccHHHHHHHhhcc--CCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccCC
Q psy14380 459 HNAFRFLDKYRDK--YCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513 (513)
Q Consensus 459 ~~~~~~l~~~~~~--~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag~ 513 (513)
+++|++|++|++. .|+||||+||||++.++|+++|++.+|++++++|+||+|||.
T Consensus 140 P~k~~il~~l~~avNt~vf~dD~~gtgntd~aG~~~AL~~~g~~l~~~rvlvlGAGg 196 (439)
T 2dvm_A 140 PKCFYILERLREELDIPVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGA 196 (439)
T ss_dssp THHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEECCSH
T ss_pred chHHHHHHHHHHhcCEEEEeCCCcEEeehHHHHHHHHHHHhCCCccCCEEEEECccH
Confidence 9999999999984 899999999999999999999999999999999999999994
No 15
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=84.95 E-value=0.94 Score=47.98 Aligned_cols=84 Identities=15% Similarity=0.183 Sum_probs=58.8
Q ss_pred ccccccchhhHHHHHHHHHHHhhcCCceeeeeccCCCccHHHHH---------------------HHhhc-------cCC
Q psy14380 422 QKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFL---------------------DKYRD-------KYC 473 (513)
Q Consensus 422 ~~~~~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~~~~l---------------------~~~~~-------~~~ 473 (513)
.|-.+-|||-..++..... ...+||.++ |=|..=...+. .|++. .+|
T Consensus 109 ~~g~~~~ey~~~~~~~~~~--~~~~p~~il---DdGgdl~~~~h~~~~~~~~~i~G~~EeTttGv~rl~~~~~~g~L~~P 183 (435)
T 3gvp_A 109 WKGESEDDFWWCIDRCVNV--EGWQPNMIL---DDGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVP 183 (435)
T ss_dssp CTTCCHHHHHHHHHHHHCB--TTBCCSEEE---ESSSHHHHHHHHHCHHHHHTCCEEEECCHHHHHHHTCC--CCCCCSC
T ss_pred ecCCCHHHHHHHHHHHHhc--cCCCCcEEE---ecchHHHHHHHHHhHHHHhhcceeEeccchhHHHHHHHHHcCCCCCC
Confidence 4666778888888876642 234566544 44443222222 23333 379
Q ss_pred ee----------ccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccCC
Q psy14380 474 TF----------NDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513 (513)
Q Consensus 474 ~~----------~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag~ 513 (513)
+| .|+..||+-++++|++. .++..+.+.+++|+|+|.
T Consensus 184 vi~vnds~tK~~fDn~yGt~~s~~~gi~r---at~~~L~GktV~ViG~G~ 230 (435)
T 3gvp_A 184 AMNVNDSVTKQKFDNLYCCRESILDGLKR---TTDMMFGGKQVVVCGYGE 230 (435)
T ss_dssp EEECTTCHHHHHHHTHHHHHHHHHHHHHH---HHCCCCTTCEEEEECCSH
T ss_pred EEEecchhhhhhhhhhhhhHHHHHHHHHH---hhCceecCCEEEEEeeCH
Confidence 99 79999999999999875 479999999999999983
No 16
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=76.23 E-value=1.7 Score=45.90 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=34.5
Q ss_pred cCCee----------ccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccC
Q psy14380 471 KYCTF----------NDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 471 ~~~~~----------~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag 512 (513)
.+|+| .|+..||+-+++.|++ |.++..+++.+++|+|.|
T Consensus 172 ~iPVinvndsvtk~~~Dn~~Gt~~slldgi~---ratg~~L~GktVgIiG~G 220 (436)
T 3h9u_A 172 TIPAMNVNDSVTKSKFDNLYGCRESLVDGIK---RATDVMIAGKTACVCGYG 220 (436)
T ss_dssp CSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---HHHCCCCTTCEEEEECCS
T ss_pred CCceEeechhhhhhhhhccccchHHHHHHHH---HhcCCcccCCEEEEEeeC
Confidence 37999 7888999999999985 557999999999999998
No 17
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=69.26 E-value=4.6 Score=42.79 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=35.4
Q ss_pred cCccc----------ccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC
Q psy14380 178 KYCTF----------NDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219 (513)
Q Consensus 178 ~~~~F----------NDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG 219 (513)
.+|+| -|+..||+-++++|+..+ ++..+.+.+++|+|+|
T Consensus 181 ~~Pvi~vnds~tK~~fDn~yGt~~s~~~gi~ra---t~~~L~GktV~ViG~G 229 (435)
T 3gvp_A 181 CVPAMNVNDSVTKQKFDNLYCCRESILDGLKRT---TDMMFGGKQVVVCGYG 229 (435)
T ss_dssp CSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHH---HCCCCTTCEEEEECCS
T ss_pred CCCEEEecchhhhhhhhhhhhhHHHHHHHHHHh---hCceecCCEEEEEeeC
Confidence 58999 789999999999999754 6889999999999999
No 18
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=60.81 E-value=5.9 Score=42.46 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=30.5
Q ss_pred ccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccC
Q psy14380 476 NDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 476 ~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag 512 (513)
.|+..||+-.++.|++ |.++..+++.+++|.|+|
T Consensus 241 fDn~yGt~~sl~dgi~---r~tg~~L~GKtVvVtGaG 274 (488)
T 3ond_A 241 FDNLYGCRHSLPDGLM---RATDVMIAGKVAVVAGYG 274 (488)
T ss_dssp THHHHHHHHHHHHHHH---HHHCCCCTTCEEEEECCS
T ss_pred hhhhccccHHHHHHHH---HHcCCcccCCEEEEECCC
Confidence 5778899999888887 789999999999999998
No 19
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=53.13 E-value=9.4 Score=40.39 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=34.3
Q ss_pred cCccc----------ccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC
Q psy14380 178 KYCTF----------NDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219 (513)
Q Consensus 178 ~~~~F----------NDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG 219 (513)
.+|+| -|+..||+-+++++++ |.++..+++.+++|+|.|
T Consensus 172 ~iPVinvndsvtk~~~Dn~~Gt~~slldgi~---ratg~~L~GktVgIiG~G 220 (436)
T 3h9u_A 172 TIPAMNVNDSVTKSKFDNLYGCRESLVDGIK---RATDVMIAGKTACVCGYG 220 (436)
T ss_dssp CSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---HHHCCCCTTCEEEEECCS
T ss_pred CCceEeechhhhhhhhhccccchHHHHHHHH---HhcCCcccCCEEEEEeeC
Confidence 47888 6788899999999996 556899999999999999
No 20
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=51.31 E-value=8.1 Score=41.40 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=34.7
Q ss_pred cCccc----------ccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC
Q psy14380 178 KYCTF----------NDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219 (513)
Q Consensus 178 ~~~~F----------NDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG 219 (513)
.+|+| -|+..||+-.++.|+. |.++..|++.+++|.|+|
T Consensus 226 ~iPvinvnDs~tK~~fDn~yGt~~sl~dgi~---r~tg~~L~GKtVvVtGaG 274 (488)
T 3ond_A 226 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVVAGYG 274 (488)
T ss_dssp CSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---HHHCCCCTTCEEEEECCS
T ss_pred CCceecccchhhhhHhhhhccccHHHHHHHH---HHcCCcccCCEEEEECCC
Confidence 58899 4788899999999887 788889999999999999
No 21
>1jfx_A 1,4-beta-N-acetylmuramidase M1; beta-alpha-barrel, cellosyl, lysozyme, hydrolase; 1.65A {Streptomyces coelicolor} SCOP: c.1.8.8
Probab=44.66 E-value=24 Score=32.87 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=35.7
Q ss_pred ceeceeeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhhcccccccc
Q psy14380 322 QCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQF 379 (513)
Q Consensus 322 ~~~p~~~~~~~~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (513)
..||+.||+-.+ + +-+ +....+-+...+.+.+|++.+++++|.+++||.
T Consensus 91 ~~lp~~lD~E~~-------~-~~~-~~~~~~~~~~~~~~~~f~~~v~~~~G~~~~iYt 139 (217)
T 1jfx_A 91 RTLPGVLDIEHN-------P-SGA-MCYGLSTTQMRTWINDFHARYKARTTRDVVIYT 139 (217)
T ss_dssp SBCCCEEECCSC-------S-SSC-TTTTCCHHHHHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred CCcCeEEEeecC-------C-CCc-ccCCCCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 368999999532 1 111 222345577888899999999999999999985
No 22
>2x8r_A Glycosyl hydrolase; peptidoglycan cleavage, endo-N-acetylmuramidases, motif; 1.70A {Aspergillus fumigatus}
Probab=42.72 E-value=26 Score=32.60 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=36.1
Q ss_pred ceeceeeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhhcccccccc
Q psy14380 322 QCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQF 379 (513)
Q Consensus 322 ~~~p~~~~~~~~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (513)
..||+.||+-.+ + + +-+....+.++..+.+.+|++.+++++|.+++||.
T Consensus 90 ~~lp~~lD~E~~-------~-~-~~~~~~~~~~~~~~~~~~f~~~v~~~~G~~p~iYt 138 (210)
T 2x8r_A 90 RTLPGMLDIEYN-------P-Y-GATCYGLSHSQMVAWIHDFVNEYHHATSRWPMIYT 138 (210)
T ss_dssp SBCCCEEECCCC-------T-T-SCGGGGCCHHHHHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred CccceEEeeecc-------C-C-cccccCCCHHHHHHHHHHHHHHHHHHHCCccEEEc
Confidence 378999999532 1 1 11223345677888899999999999999999985
No 23
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Probab=39.81 E-value=94 Score=32.55 Aligned_cols=85 Identities=18% Similarity=0.258 Sum_probs=61.7
Q ss_pred chhhHHHHHHHHHHHhhcCCceeeeeccCCCccH--HHHHHHhhcc---C---Ceec----------cCCccHHHHHHHH
Q psy14380 428 EAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNA--FRFLDKYRDK---Y---CTFN----------DDIQGTASVAVAG 489 (513)
Q Consensus 428 ~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~--~~~l~~~~~~---~---~~~~----------dd~qgt~~~~~~~ 489 (513)
+|-..|...|+.++.+.-||.+-|-=+|.+..-. --+.+.|+.. . .++. +.-.-||-=++-+
T Consensus 119 ~el~r~~r~f~~~l~~~iG~~~dvpA~Dvgt~~~~m~~~~~~y~~~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv~~~ 198 (421)
T 2yfq_A 119 RELEQLSRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAFGGSEGRNEATGFGVAVV 198 (421)
T ss_dssp HHHHHHHHHHHHHHGGGCBTTTEEEEECTTCCHHHHHHHHHHHHHHTTTCCCGGGSCSCCGGGTCCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCCEEecCchhcCCCCCCCcchHHHHHHH
Confidence 4556789999999999999999999999997421 1355666532 1 1221 2223466666667
Q ss_pred HHHHHHHhCCcCCcceEEEeccC
Q psy14380 490 LMAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~gag 512 (513)
+-.+++..|.+++..|++|.|.|
T Consensus 199 ~~~~~~~~g~~l~g~~vaVqG~G 221 (421)
T 2yfq_A 199 VRESAKRFGIKMEDAKIAVQGFG 221 (421)
T ss_dssp HHHHHHHTTCCGGGSCEEEECCS
T ss_pred HHHHHHhcCCCccCCEEEEECcC
Confidence 77788889999999999999988
No 24
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*
Probab=39.19 E-value=57 Score=34.70 Aligned_cols=82 Identities=15% Similarity=0.284 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhhcccccccccccCCccchhhcccccCceeeeecCCCcccccccCcccccccccccccchhhHHHHHH
Q psy14380 358 ELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEF 437 (513)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 437 (513)
+++.|+.+|+++ +|.+.-+|+--..- .+|.| .+.++|.+|+..=
T Consensus 112 Div~el~~A~r~-~gl~~g~Y~S~~d~----------------------------~~~~y-------~~~~~y~~~~~~q 155 (478)
T 3ues_A 112 DLVREVSESARR-HGLKFGVYLSPWDR----------------------------TEESY-------GKGKAYDDFYVGQ 155 (478)
T ss_dssp CHHHHHHHHHHH-TTCEEEEEECSCCS----------------------------SCTTT-------TSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-cCCeEEEEeChHHh----------------------------CCccc-------CchHHHHHHHHHH
Confidence 688999999977 59999988753211 12334 1246899998888
Q ss_pred HHHHHhhcCCceeeeeccCCC-------------ccHHHHHHHhhccCCeecc
Q psy14380 438 MKAVVKRYGQNTLIQFEDFGN-------------HNAFRFLDKYRDKYCTFND 477 (513)
Q Consensus 438 ~~~v~~~~g~~~~~~~ed~~~-------------~~~~~~l~~~~~~~~~~~d 477 (513)
+.-+-.+|||-. +-|=|.+. ..-++++++|+... ++||
T Consensus 156 l~EL~~~Yg~~~-~~W~Dg~~~~~~~~~~~~~~~~~~~~~i~~~qP~~-vi~~ 206 (478)
T 3ues_A 156 LTELLTQYGPIF-SVWLDGANGEGKNGKTQYYDWDRYYNVIRSLQPDA-VISV 206 (478)
T ss_dssp HHHHHHSSSCCS-EEEECCCCCCCTTSCCCCCCHHHHHHHHHHHCTTS-EEEE
T ss_pred HHHHHhcCCcce-EEEeeCCCCCCCccchhhhhHHHHHHHHHHHCcCE-EEEC
Confidence 888888999833 44556653 22567888888874 5665
No 25
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=37.77 E-value=26 Score=34.18 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=26.9
Q ss_pred cCcccccCcchhHHHHHHHHHhh-hhhcCcccccceEEEecCC
Q psy14380 178 KYCTFNDDIQGTASVAVAGLMAG-RRVTGKKISECRFLFLGAG 219 (513)
Q Consensus 178 ~~~~FNDDIQGTgAVaLAGlLaA-lr~tg~~l~d~rivf~GAG 219 (513)
+..=+|-|. .|++.+ ++..+.+++++++++.|||
T Consensus 95 ~l~G~NTD~--------~G~~~~lL~~~~~~l~~k~~lvlGaG 129 (272)
T 3pwz_A 95 RIVAENFDG--------IGLLRDIEENLGEPLRNRRVLLLGAG 129 (272)
T ss_dssp EEEEECCHH--------HHHHHHHHTTSCCCCTTSEEEEECCS
T ss_pred eEEEecCCH--------HHHHHHHHHHcCCCccCCEEEEECcc
Confidence 355577774 567777 7777888999999999999
No 26
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Probab=36.93 E-value=93 Score=32.76 Aligned_cols=85 Identities=16% Similarity=0.244 Sum_probs=63.3
Q ss_pred chhhHHHHHHHHHHHhhcCCceeeeeccCCCccH-HH-HHHHhhcc---C--Cee----------ccCCccHHHHHHHHH
Q psy14380 428 EAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNA-FR-FLDKYRDK---Y--CTF----------NDDIQGTASVAVAGL 490 (513)
Q Consensus 428 ~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~-~~-~l~~~~~~---~--~~~----------~dd~qgt~~~~~~~~ 490 (513)
.|-..|...||.++.+.-||++-|-=+|.+..-. .. +.+.|+.. . .++ .+-..-||--++.++
T Consensus 129 ~El~r~~r~f~~~l~~~iG~~~dipApDvgt~~~~m~~~~~~y~~~~g~~~~~~vTGkp~~~GGs~~r~~aTg~Gv~~~~ 208 (424)
T 3k92_A 129 GELERLSRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGGSQGRETATAQGVTICI 208 (424)
T ss_dssp HHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHTSCCGGGCSSCCGGGTCCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccCCcCCCCHHHHHHHHHHHHHHhCCCCcceeecccccCCCcCCCcccHHHHHHHHH
Confidence 4555688999999999999999999999986322 22 45677432 1 111 222345787788888
Q ss_pred HHHHHHhCCcCCcceEEEeccC
Q psy14380 491 MAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~gag 512 (513)
-++++..|.++++.|++|-|.|
T Consensus 209 ~~~~~~~g~~l~g~~vaVqG~G 230 (424)
T 3k92_A 209 EEAVKKKGIKLQNARIIIQGFG 230 (424)
T ss_dssp HHHHHHTTCCGGGCEEEEECCS
T ss_pred HHHHHHcCCCcccCEEEEECCC
Confidence 8888889999999999999988
No 27
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=36.19 E-value=28 Score=34.06 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=26.9
Q ss_pred cCcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC
Q psy14380 178 KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219 (513)
Q Consensus 178 ~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG 219 (513)
+..=+|-|. .|++.+++..+.++++.+++|.|||
T Consensus 102 ~l~G~NTD~--------~G~~~~L~~~~~~l~~k~vlvlGaG 135 (281)
T 3o8q_A 102 EILGDNTDG--------EGLVQDLLAQQVLLKGATILLIGAG 135 (281)
T ss_dssp CEEEECCHH--------HHHHHHHHHTTCCCTTCEEEEECCS
T ss_pred cEEEEecHH--------HHHHHHHHHhCCCccCCEEEEECch
Confidence 355577774 5677777777888999999999999
No 28
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=35.53 E-value=1.6e+02 Score=24.92 Aligned_cols=96 Identities=13% Similarity=0.236 Sum_probs=56.7
Q ss_pred ChhhHHHHHHHHHHHHHHhhcccccccccccCCccchhhcccccCceeeeecCC---CcccccccCcccccccccccccc
Q psy14380 352 TGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEG---TNNEKLLKDPLYVGLRQKRTTGE 428 (513)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 428 (513)
+.+.=.+++++..+++.+.+|- -.++-|-++....+....|.... ..++ +-.+|=+.....+-|
T Consensus 13 ~~e~k~~l~~~i~~al~~~~g~---------p~~~~~v~i~~~~~~~~~~~g~~l~~~~~~----~~~~I~i~~~grt~e 79 (131)
T 2aal_A 13 TDAQIKSLLDAAHGAMVDAFGV---------PANDRYQTVSQHRPGEMVLEDTGLGYGRSS----AVVLLTVISRPRSEE 79 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCC---------CTTCCEEEEEEECTTSEEECCTTSCCCCCT----TCEEEEEEESCCCHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCc---------ChhHEEEEEEEECHHHcccCCccCCcCCCC----CeEEEEEEeCCCCHH
Confidence 4556688889999999888861 11111222222222233333211 1111 223444443334678
Q ss_pred hhhHHHHHHHHHHHhhcC---CceeeeeccCCCcc
Q psy14380 429 AYDELIDEFMKAVVKRYG---QNTLIQFEDFGNHN 460 (513)
Q Consensus 429 ~y~~~~~~~~~~v~~~~g---~~~~~~~ed~~~~~ 460 (513)
...+|+.++.++++++.| .+..|.+.|...+|
T Consensus 80 qK~~l~~~l~~~l~~~lg~~~~~v~I~i~e~~~~~ 114 (131)
T 2aal_A 80 QKVCFYKLLTGALERDCGISPDDVIVALVENSDAD 114 (131)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHH
Confidence 889999999999999887 35678888876554
No 29
>2wag_A Lysozyme, putative; hydrolase, GH25, lysin; 1.40A {Bacillus anthracis}
Probab=32.87 E-value=43 Score=31.54 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=35.2
Q ss_pred eeceeeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhhcccccccc
Q psy14380 323 CLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQF 379 (513)
Q Consensus 323 ~~p~~~~~~~~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (513)
.||+.||+-... +-.+.+.+-+...+.+.+|++.+++++|-+++|+.
T Consensus 99 ~lp~~lDvE~~~----------~~~~~~~s~~~~~~~~~~f~~~v~~~~G~~p~iYt 145 (220)
T 2wag_A 99 ALPPVIDVEFYA----------NKKDNPPKREDVTKELSVMIEMLEKHYGKKVILYA 145 (220)
T ss_dssp SCCCEEEECCCT----------TGGGSCCCHHHHHHHHHHHHHHHHHHHCSCCEEEE
T ss_pred CCceEEEEeccC----------CcccCCCCHHHHHHHHHHHHHHHHHHHCCceEEEe
Confidence 689999995311 01123456677788889999999999999999985
No 30
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=31.08 E-value=39 Score=33.23 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=28.5
Q ss_pred cCcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC
Q psy14380 178 KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219 (513)
Q Consensus 178 ~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG 219 (513)
+..-+|-|. .|++.+++..+.++++++++++|||
T Consensus 98 ~l~G~NTD~--------~G~~~~L~~~~~~~~~k~vlvlGaG 131 (282)
T 3fbt_A 98 GISGFNTDY--------IGFGKMLSKFRVEIKNNICVVLGSG 131 (282)
T ss_dssp CEEEECCHH--------HHHHHHHHHTTCCCTTSEEEEECSS
T ss_pred EEEeeCCcH--------HHHHHHHHHcCCCccCCEEEEECCc
Confidence 455678784 6788888888889999999999999
No 31
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=30.50 E-value=1.5e+02 Score=25.63 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=59.5
Q ss_pred ccCCChhhHHHHHHHHHHHHHHhhcccccccccccCCccchhhcccccCceeeeecCCCcc----ccccc-Cccccc--c
Q psy14380 348 QKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNN----EKLLK-DPLYVG--L 420 (513)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~--~ 420 (513)
..|.+.|.=.+|++++.+++.+.+|.. =.+.+..|+|....| -+... +.+||= +
T Consensus 9 ~g~~s~e~k~~L~~~it~al~~~lg~p-------------------~~~v~V~i~e~~~~~~~~gG~~~s~~~~~I~i~~ 69 (148)
T 3n4h_A 9 RIRISREAKQRIAEAITDAHHELAHAP-------------------KYLVQVIFNEVEPDSYFIAAQSASENHIWVQATI 69 (148)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHTCC-------------------GGGCEEEEEEECGGGCEETTEECCTTCEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCcC-------------------cccEEEEEEEEChHHeEECCEEccCcEEEEEEEE
Confidence 446677777889999999999988732 012223333322111 11122 446663 4
Q ss_pred cccccccchhhHHHHHHHHHHHhhcCC---ceeeeeccCCCcc
Q psy14380 421 RQKRTTGEAYDELIDEFMKAVVKRYGQ---NTLIQFEDFGNHN 460 (513)
Q Consensus 421 ~~~~~~~~~y~~~~~~~~~~v~~~~g~---~~~~~~ed~~~~~ 460 (513)
..-| +-|...+|+.++.+++.++.|- +..|.|.|....|
T Consensus 70 ~~Gr-t~eqk~~l~~~l~~~l~~~lgi~~~~v~V~i~E~~~~~ 111 (148)
T 3n4h_A 70 RSGR-TEKQKEELLLRLTQEIALILGIPNEEVWVYITEIPGSN 111 (148)
T ss_dssp ESCC-CHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGG
T ss_pred ECCC-CHHHHHHHHHHHHHHHHHHhCcCcCcEEEEEEEcCHHH
Confidence 4556 7788999999999999999984 4677777765443
No 32
>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E
Probab=30.31 E-value=2.4e+02 Score=29.95 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=63.0
Q ss_pred ccchhhHHHHHHHHHHHhhcCCceeeeeccCCCccHH--HHHHHh---hccC-Cee----------ccCCccHHHHHHHH
Q psy14380 426 TGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF--RFLDKY---RDKY-CTF----------NDDIQGTASVAVAG 489 (513)
Q Consensus 426 ~~~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~~--~~l~~~---~~~~-~~~----------~dd~qgt~~~~~~~ 489 (513)
.-.|-..|...||..+.+..||++-|--+|++..--- -+.+.| +... +++ .+.-.-||-=++-+
T Consensus 142 s~~El~R~~~~f~~eL~~~iG~d~dvpa~Dig~~~~em~~~~~~y~~~~~~~~~v~TGk~~~~GGs~~r~~aTg~Gv~~~ 221 (450)
T 4fcc_A 142 SEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYF 221 (450)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTCCSCCCSSCCGGGTCCTTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhheecCCCCCCccceeecchhhhhhhhhhhhccCCCceeecCCCcccCCCCCCCCceeeeHHHH
Confidence 3456667889999999999999999999999753210 133444 3332 222 12233477777778
Q ss_pred HHHHHHHhCCcCCcceEEEeccC
Q psy14380 490 LMAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~gag 512 (513)
+-++++..|.+++..|++|=|.|
T Consensus 222 ~~~~~~~~~~~l~Gk~vaVQG~G 244 (450)
T 4fcc_A 222 TEAMLKRHGMGFEGMRVSVSGSG 244 (450)
T ss_dssp HHHHHHHTTCCSTTCEEEEECCS
T ss_pred HHHHHHHcCCCcCCCEEEEeCCC
Confidence 88888999999999999999988
No 33
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=30.03 E-value=42 Score=32.12 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=26.9
Q ss_pred cCcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC
Q psy14380 178 KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219 (513)
Q Consensus 178 ~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG 219 (513)
+..-+|-| -.|++.+++..+.+++..+++|.|||
T Consensus 95 ~l~g~NTD--------~~G~~~~L~~~~~~~~~~~vlvlGaG 128 (272)
T 1p77_A 95 KLYADNTD--------GIGLVTDLQRLNWLRPNQHVLILGAG 128 (272)
T ss_dssp CEEEECCH--------HHHHHHHHHHTTCCCTTCEEEEECCS
T ss_pred EEEEecCC--------HHHHHHHHHHhCCCcCCCEEEEECCc
Confidence 34557777 45677778777788999999999999
No 34
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=29.97 E-value=36 Score=33.51 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=28.8
Q ss_pred cCCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccCC
Q psy14380 471 KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513 (513)
Q Consensus 471 ~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag~ 513 (513)
+..-+|-|- .|++.+++-.|.+++..+++++|||.
T Consensus 98 ~l~G~NTD~--------~G~~~~L~~~~~~~~~k~vlvlGaGG 132 (282)
T 3fbt_A 98 GISGFNTDY--------IGFGKMLSKFRVEIKNNICVVLGSGG 132 (282)
T ss_dssp CEEEECCHH--------HHHHHHHHHTTCCCTTSEEEEECSST
T ss_pred EEEeeCCcH--------HHHHHHHHHcCCCccCCEEEEECCcH
Confidence 456677773 67888888889999999999999983
No 35
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A
Probab=29.91 E-value=1.6e+02 Score=30.63 Aligned_cols=84 Identities=17% Similarity=0.191 Sum_probs=60.9
Q ss_pred chhhHHHHHHHHHHHhhcCCceeeeeccCCCccHHH---HHHHhhcc---C----CeeccC----------CccHHHHHH
Q psy14380 428 EAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFR---FLDKYRDK---Y----CTFNDD----------IQGTASVAV 487 (513)
Q Consensus 428 ~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~~~---~l~~~~~~---~----~~~~dd----------~qgt~~~~~ 487 (513)
+|-..|...|+.++.+.-||++-|-=+|.+.. +.. +.+.|.+. . .++..+ -.-||-=++
T Consensus 117 ~e~~~~~r~f~~~l~~~~g~~~dv~a~D~gt~-~~~m~~~~~~y~~~~~~~~~~~~~~tGk~~~~GGs~~~~~aTg~Gv~ 195 (419)
T 1gtm_A 117 REKERLARGYIRAIYDVISPYEDIPAPDVYTN-PQIMAWMMDEYETISRRKTPAFGIITGKPLSIGGSLGRIEATARGAS 195 (419)
T ss_dssp HHHHHHHHHHHHHHGGGCBTTTEECCBCTTCC-HHHHHHHHHHHHHHHTTSSCGGGGCSSCCGGGTCCTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEeCCCCCCC-HHHHHHHHHHHHHhhCCCCCccceEecCcchhCCCCCCCcchhhHHH
Confidence 45677899999999999999999999999873 222 33555321 1 233222 123666666
Q ss_pred HHHHHHHHHhCCc-CCcceEEEeccC
Q psy14380 488 AGLMAGRRVTGKK-ISECRFLFLGAG 512 (513)
Q Consensus 488 ~~~~~~~~~~~~~-~~~~~~~~~gag 512 (513)
-++-.+++..|.+ +++.++.|+|.|
T Consensus 196 ~~~~~~~~~~G~~~l~gktvgI~G~G 221 (419)
T 1gtm_A 196 YTIREAAKVLGWDTLKGKTIAIQGYG 221 (419)
T ss_dssp HHHHHHHHHTTCSCSTTCEEEEECCS
T ss_pred HHHHHHHHHhCCcccCCCEEEEEcCC
Confidence 6777888889999 999999999998
No 36
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=29.87 E-value=33 Score=33.61 Aligned_cols=34 Identities=32% Similarity=0.526 Sum_probs=27.3
Q ss_pred cCcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC
Q psy14380 178 KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219 (513)
Q Consensus 178 ~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG 219 (513)
+..-+|-|. .|++.+++..+.++++.+++|.|||
T Consensus 93 ~l~G~NTD~--------~G~~~~L~~~~~~l~~k~vlvlGaG 126 (277)
T 3don_A 93 KWIGYNTDG--------IGYVNGLKQIYEGIEDAYILILGAG 126 (277)
T ss_dssp EEEEECCHH--------HHHHHHHHHHSTTGGGCCEEEECCS
T ss_pred EEEEECChH--------HHHHHHHHHhCCCcCCCEEEEECCc
Confidence 456678884 4566677777888999999999999
No 37
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=29.74 E-value=79 Score=33.43 Aligned_cols=85 Identities=19% Similarity=0.383 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhhcccccccccccCCccchhhcccccCceeeeecCCCcccccccCcccccccccccccchhhHHHHHH
Q psy14380 358 ELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEF 437 (513)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 437 (513)
+++.|+.+|++++ |.+.-+|+--.--++. + +|.|- -++|.+|+..=
T Consensus 104 Div~e~~~A~r~~-Gl~~g~Y~s~~dw~~~--~-----------------------~~~y~--------~~~Y~~~~~~Q 149 (469)
T 3eyp_A 104 DVVREFVDACEEY-GLKAGIYLGPHDRHEH--L-----------------------SPLYT--------TERYKEYYAHQ 149 (469)
T ss_dssp CHHHHHHHHHHHH-TCEEEEEECSSCHHHH--T-----------------------STTCC--------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHc-CCeEEEEeChhHhCCC--c-----------------------CcccC--------cHHHHHHHHHH
Confidence 6889999999775 9999998863211110 0 12221 13688888877
Q ss_pred HHHHHhhcCCceeeeeccCCCc---cH------HHHHHHhhccCCeecc
Q psy14380 438 MKAVVKRYGQNTLIQFEDFGNH---NA------FRFLDKYRDKYCTFND 477 (513)
Q Consensus 438 ~~~v~~~~g~~~~~~~ed~~~~---~~------~~~l~~~~~~~~~~~d 477 (513)
+.-+-.+||+ ..+-|=|.+.. +. .+++++|+....+|||
T Consensus 150 l~ELlt~Yg~-i~~lW~Dg~~~~~~~~~~~~~w~~~i~~~qP~~vi~~~ 197 (469)
T 3eyp_A 150 LGELMSDYGK-IWETWWDGAGADELTTPVYRHWYKIVREKQPDCVIFGT 197 (469)
T ss_dssp HHHHHHSSCC-CCEEECCCTTCTTCCHHHHHHHHHHHHHHCTTCEEECC
T ss_pred HHHHHhcCCc-ccEEEeCCCCCCCccchhHhHHHHHHHHHCcCcEEeCC
Confidence 7778889996 33457788643 21 3788999998877765
No 38
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}
Probab=29.61 E-value=1.5e+02 Score=31.03 Aligned_cols=85 Identities=18% Similarity=0.228 Sum_probs=61.7
Q ss_pred chhhHHHHHHHHHHHhhcCCceeeeeccCCCccH--HHHHHHhhcc---C--Cee----------ccCCccHHHHHHHHH
Q psy14380 428 EAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNA--FRFLDKYRDK---Y--CTF----------NDDIQGTASVAVAGL 490 (513)
Q Consensus 428 ~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~--~~~l~~~~~~---~--~~~----------~dd~qgt~~~~~~~~ 490 (513)
+|-..|...|+.++.+.-||++-|-=+|.+..-. --+.+.|+.. + .++ .+.-.-||-=++-++
T Consensus 126 ~El~r~~r~f~~~l~~~iGp~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv~~~~ 205 (419)
T 3aoe_E 126 QELERLVRRYTAELVGLIGPDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVTGKPHALGGSEGRDDAAGLGALLVL 205 (419)
T ss_dssp HHHHHHHHHHHHHHTTTCBTTTEEEEEBTTBCHHHHHHHHHHHHHHHTSCCGGGBSSCCGGGTCCSSCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCeeeccchhcCCCCCCccchHHHHHHHH
Confidence 4556789999999999999999999999987421 1245666331 1 112 122234666666677
Q ss_pred HHHHHHhCCcCCcceEEEeccC
Q psy14380 491 MAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~gag 512 (513)
-.+++..|.++++.|++|-|.|
T Consensus 206 ~~~~~~~g~~l~gk~vaVqG~G 227 (419)
T 3aoe_E 206 EALAKRRGLDLRGARVVVQGLG 227 (419)
T ss_dssp HHHHHHHTCCCTTCEEEEECCS
T ss_pred HHHHHhcCCCccCCEEEEECcC
Confidence 7888889999999999999988
No 39
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=28.66 E-value=39 Score=33.03 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=26.8
Q ss_pred cCCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccC
Q psy14380 471 KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 471 ~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag 512 (513)
+..=+|-| ..|++.+++-.|.++++.+++|+|||
T Consensus 102 ~l~G~NTD--------~~G~~~~L~~~~~~l~~k~vlvlGaG 135 (281)
T 3o8q_A 102 EILGDNTD--------GEGLVQDLLAQQVLLKGATILLIGAG 135 (281)
T ss_dssp CEEEECCH--------HHHHHHHHHHTTCCCTTCEEEEECCS
T ss_pred cEEEEecH--------HHHHHHHHHHhCCCccCCEEEEECch
Confidence 45566666 35677777778889999999999998
No 40
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=28.38 E-value=41 Score=32.19 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=27.1
Q ss_pred cCCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccC
Q psy14380 471 KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 471 ~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag 512 (513)
+..-+|-| ..|++.+++-.|..++..+++|+|||
T Consensus 95 ~l~g~NTD--------~~G~~~~L~~~~~~~~~~~vlvlGaG 128 (272)
T 1p77_A 95 KLYADNTD--------GIGLVTDLQRLNWLRPNQHVLILGAG 128 (272)
T ss_dssp CEEEECCH--------HHHHHHHHHHTTCCCTTCEEEEECCS
T ss_pred EEEEecCC--------HHHHHHHHHHhCCCcCCCEEEEECCc
Confidence 34567777 46777787777888999999999998
No 41
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=28.34 E-value=33 Score=33.58 Aligned_cols=34 Identities=32% Similarity=0.538 Sum_probs=27.6
Q ss_pred cCCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccC
Q psy14380 471 KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 471 ~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag 512 (513)
+..-+|-| ..|++.+++-.|.++++.+++|+|||
T Consensus 93 ~l~G~NTD--------~~G~~~~L~~~~~~l~~k~vlvlGaG 126 (277)
T 3don_A 93 KWIGYNTD--------GIGYVNGLKQIYEGIEDAYILILGAG 126 (277)
T ss_dssp EEEEECCH--------HHHHHHHHHHHSTTGGGCCEEEECCS
T ss_pred EEEEECCh--------HHHHHHHHHHhCCCcCCCEEEEECCc
Confidence 46778888 34567777778889999999999998
No 42
>3tum_A Shikimate dehydrogenase family protein; rossmann-fold NAD(P)(+)-binding site, shikimate dehydrogenas substrate binding domain, oxidoreductase; HET: NAD; 2.15A {Pseudomonas putida}
Probab=27.93 E-value=47 Score=32.43 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=28.0
Q ss_pred cCcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC
Q psy14380 178 KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219 (513)
Q Consensus 178 ~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG 219 (513)
+..-+|-|.. |++.+++..+.+++++|++++|||
T Consensus 101 ~l~G~NTD~~--------Gf~~~L~~~g~~~~~~~~lilGaG 134 (269)
T 3tum_A 101 RLLGDNVDGA--------GFLGAAHKHGFEPAGKRALVIGCG 134 (269)
T ss_dssp CEEEECCHHH--------HHHHHHHHTTCCCTTCEEEEECCS
T ss_pred EEEEEEcChH--------HHHHHHHHhCCCcccCeEEEEecH
Confidence 4566888864 466778888889999999999999
No 43
>4f8x_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA; 1.47A {Penicillium canescens}
Probab=27.73 E-value=1.4e+02 Score=30.23 Aligned_cols=92 Identities=15% Similarity=0.285 Sum_probs=58.3
Q ss_pred CChhhHHHHHHHHHHHHHHhhcccccccccccCCccchhhcccccCceeeeecCCCcccccccCcccccccccccccchh
Q psy14380 351 TTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAY 430 (513)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 430 (513)
.+.++..+.+.+++++|..||+-+ =...-++||....+-.+-+..|| +..|++|
T Consensus 101 ~~~~~l~~~~~~~I~~v~~rY~g~--------------------i~~WDVvNE~~~~~g~~r~s~~~------~~lG~~~ 154 (335)
T 4f8x_A 101 WTAKELTAVMKNHIFKTVQHFGRR--------------------CYSWDVVNEALNGDGTFSSSVWY------DTIGEEY 154 (335)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHGGG--------------------CSEEEEEESCBCTTSSBCCCHHH------HHHCTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCC--------------------ceEEEEecCccCCCCccccCchh------hhcCHHH
Confidence 456677888999999999999411 12355888887655433333333 3458766
Q ss_pred hHHHHHHHHHHHhh----cCCceeeeeccCCCcc-------HHHHHHHhhcc
Q psy14380 431 DELIDEFMKAVVKR----YGQNTLIQFEDFGNHN-------AFRFLDKYRDK 471 (513)
Q Consensus 431 ~~~~~~~~~~v~~~----~g~~~~~~~ed~~~~~-------~~~~l~~~~~~ 471 (513)
. .+..++.++. +.|++.+-.-|+...+ ..+++++.+++
T Consensus 155 i---~~aF~~Ar~a~~~~~dP~a~L~~NDYn~e~~~~k~~~~~~lv~~l~~~ 203 (335)
T 4f8x_A 155 F---YLAFKYAQEALAQIGANDVKLYYNDYGIENPGTKSTAVLQLVSNLRKR 203 (335)
T ss_dssp H---HHHHHHHHHHHHHTTCTTSEEEEEESSCSSSSHHHHHHHHHHHHHHHT
T ss_pred H---HHHHHHHHHhccccCCCCcEEEEecccccCCcHhHHHHHHHHHHHHHC
Confidence 5 4444444444 4799999999987442 24466666665
No 44
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=27.26 E-value=32 Score=30.74 Aligned_cols=58 Identities=7% Similarity=0.161 Sum_probs=39.0
Q ss_pred eeceeeecCCCc--------cccccCcccccccccCCChhhHHHHHHHHHHHHHHhhcccccccccccCCccchhhcccc
Q psy14380 323 CLPITIDVGTNN--------EKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKY 394 (513)
Q Consensus 323 ~~p~~~~~~~~~--------~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~ 394 (513)
-=||.||++.++ ...+.|| ++.+.+.+.| ++||+ |....+...++.+|
T Consensus 42 ~K~vlvd~~a~wC~~C~~me~~vf~d~--------------------~V~~~l~~~f---v~v~~-d~~~~~~~~l~~~y 97 (153)
T 2dlx_A 42 NKWLMINIQNVQDFACQCLNRDVWSNE--------------------AVKNIIREHF---IFWQV-YHDSEEGQRYIQFY 97 (153)
T ss_dssp TCEEEEEEECSCTTTHHHHHHHTTTCH--------------------HHHHHHHHTE---EEEEE-ESSSHHHHHHHHHH
T ss_pred CCeEEEEEECCCCHhHHHHHHHhcCCH--------------------HHHHHHHcCe---EEEEE-ecCCHhHHHHHHHc
Confidence 358888888762 3455565 5556666788 89998 55666677888888
Q ss_pred cC----ceeeeecC
Q psy14380 395 RD----KYCTFNDE 404 (513)
Q Consensus 395 ~~----~~~~~~~~ 404 (513)
+- +++.++.+
T Consensus 98 ~v~~~P~~~fld~~ 111 (153)
T 2dlx_A 98 KLGDFPYVSILDPR 111 (153)
T ss_dssp TCCSSSEEEEECTT
T ss_pred CCCCCCEEEEEeCC
Confidence 64 45555544
No 45
>3tum_A Shikimate dehydrogenase family protein; rossmann-fold NAD(P)(+)-binding site, shikimate dehydrogenas substrate binding domain, oxidoreductase; HET: NAD; 2.15A {Pseudomonas putida}
Probab=27.08 E-value=46 Score=32.47 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=27.6
Q ss_pred cCCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccC
Q psy14380 471 KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 471 ~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag 512 (513)
+..=+|-|- .|++.+++-.|.+++..|+|++|||
T Consensus 101 ~l~G~NTD~--------~Gf~~~L~~~g~~~~~~~~lilGaG 134 (269)
T 3tum_A 101 RLLGDNVDG--------AGFLGAAHKHGFEPAGKRALVIGCG 134 (269)
T ss_dssp CEEEECCHH--------HHHHHHHHHTTCCCTTCEEEEECCS
T ss_pred EEEEEEcCh--------HHHHHHHHHhCCCcccCeEEEEecH
Confidence 456788884 4566777788899999999999998
No 46
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=26.98 E-value=45 Score=32.60 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=26.8
Q ss_pred cCCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccC
Q psy14380 471 KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 471 ~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag 512 (513)
+..=+|-|- .|++.+++-.+..+++.+++++|||
T Consensus 103 ~l~G~NTD~--------~G~~~~l~~~~~~l~~k~vlVlGaG 136 (283)
T 3jyo_A 103 HTTGHNTDV--------SGFGRGMEEGLPNAKLDSVVQVGAG 136 (283)
T ss_dssp CEEEECHHH--------HHHHHHHHHHCTTCCCSEEEEECCS
T ss_pred eEEEecCCH--------HHHHHHHHHhCcCcCCCEEEEECCc
Confidence 345667663 5677777778889999999999998
No 47
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=26.97 E-value=46 Score=32.51 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=26.8
Q ss_pred cCcccccCcchhHHHHHHHHHhhhhhcCcccccceEEEecCC
Q psy14380 178 KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219 (513)
Q Consensus 178 ~~~~FNDDIQGTgAVaLAGlLaAlr~tg~~l~d~rivf~GAG 219 (513)
+..-+|-|. .|++.+++..+.+++++++++.|||
T Consensus 103 ~l~G~NTD~--------~G~~~~l~~~~~~l~~k~vlVlGaG 136 (283)
T 3jyo_A 103 HTTGHNTDV--------SGFGRGMEEGLPNAKLDSVVQVGAG 136 (283)
T ss_dssp CEEEECHHH--------HHHHHHHHHHCTTCCCSEEEEECCS
T ss_pred eEEEecCCH--------HHHHHHHHHhCcCcCCCEEEEECCc
Confidence 455677774 5677777777788999999999999
No 48
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A
Probab=26.07 E-value=1.8e+02 Score=30.62 Aligned_cols=85 Identities=14% Similarity=0.157 Sum_probs=61.2
Q ss_pred chhhHHHHHHHHHHHhhcCCceeeeeccCCCcc--HHHHHHHhhc---cC--Cee----------ccCCccHHHHHHHHH
Q psy14380 428 EAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHN--AFRFLDKYRD---KY--CTF----------NDDIQGTASVAVAGL 490 (513)
Q Consensus 428 ~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~--~~~~l~~~~~---~~--~~~----------~dd~qgt~~~~~~~~ 490 (513)
+|-..|...|+.++.+.-||++-|-=+|.+..- ---+.+.|+. .+ .++ .+.-.-||-=++-++
T Consensus 143 ~Eler~~r~f~~~l~~~iGp~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~g~vTGkp~~~GGs~~r~~aTg~Gv~~~~ 222 (440)
T 3aog_A 143 GELERLTRRYTSEIGILLGPDRDIPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVFITA 222 (440)
T ss_dssp HHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHTSCCGGGSSSCCGGGTCCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCeEeccchhhCCCCCCCcchHHHHHHHH
Confidence 455678999999999999999999999998741 1124566633 11 122 122234666666677
Q ss_pred HHHHHHhCCcCCcceEEEeccC
Q psy14380 491 MAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~gag 512 (513)
-.+++..|.++++.|++|.|.|
T Consensus 223 ~~~~~~~g~~l~g~~vaVqGfG 244 (440)
T 3aog_A 223 AAAAEKIGLQVEGARVAIQGFG 244 (440)
T ss_dssp HHHHHHHTCCSTTCEEEEECCS
T ss_pred HHHHHhcCCCccCCEEEEeccC
Confidence 7788889999999999999988
No 49
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=25.96 E-value=42 Score=32.78 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=0.0
Q ss_pred cccCcchhHHHHHHHHHhhhhhcC-cccccceEEEecCC------------Cc--eEEEeeCCC
Q psy14380 182 FNDDIQGTASVAVAGLMAGRRVTG-KKISECRFLFLGAG------------EG--RCIFASGSP 230 (513)
Q Consensus 182 FNDDIQGTgAVaLAGlLaAlr~tg-~~l~d~rivf~GAG------------~G--kalfAsGSP 230 (513)
+|-|+ .|++.+++..+ .+++..+++|+||| .| ++.++..+|
T Consensus 120 ~nTd~--------~G~~~~l~~~~~~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~ 175 (297)
T 2egg_A 120 YNTDG--------LGYVQALEEEMNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV 175 (297)
T ss_dssp ECCHH--------HHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred ccCCH--------HHHHHHHHHhCCCCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
No 50
>1v0l_A Endo-1,4-beta-xylanase A; glycoside hydrolase family 10, xylan degradation, isofagomine, hydrolase; 0.98A {Streptomyces lividans} SCOP: c.1.8.3 PDB: 1e0x_A 1e0w_A* 1od8_A 1v0k_A 1v0m_A 1v0n_A 1e0v_A* 1xas_A 2g3i_A 2g3j_A* 2g4f_A 1v6y_A
Probab=25.72 E-value=1.9e+02 Score=28.50 Aligned_cols=91 Identities=12% Similarity=0.336 Sum_probs=56.8
Q ss_pred CChhhHHHHHHHHHHHHHHhhcccccccccccCCccchhhcccccCceeeeecCCCcccc-cccCcccccccccccccch
Q psy14380 351 TTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEK-LLKDPLYVGLRQKRTTGEA 429 (513)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 429 (513)
.+.+.+.+.+.++++.|..||+-+ + ..+-++||...++.. +-.+.+| +..|++
T Consensus 96 ~~~~~~~~~~~~~i~~v~~ry~g~----------------i----~~wdv~NE~~~~~g~~~~~~~~~------~~~G~~ 149 (313)
T 1v0l_A 96 LSGSALRQAMIDHINGVMAHYKGK----------------I----VQWDVVNEAFADGSSGARRDSNL------QRSGND 149 (313)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTT----------------C----SEEEEEECCBCSSSSCCBCCSHH------HHTCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCc----------------c----eEEeeecccccCCCcccccCcHH------HhhhHH
Confidence 467888999999999999999421 1 223466666544322 2223332 123766
Q ss_pred hhHHHHHHHHHHHhhcCCceeeeeccCCCcc-------H-HHHHHHhhcc
Q psy14380 430 YDELIDEFMKAVVKRYGQNTLIQFEDFGNHN-------A-FRFLDKYRDK 471 (513)
Q Consensus 430 y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~-------~-~~~l~~~~~~ 471 (513)
| |.+..++.++.. |++.+-.-|+...+ + .+++++++++
T Consensus 150 ~---i~~af~~Ar~~d-P~a~L~~Ndyn~~~~~~~k~~~~~~~v~~l~~~ 195 (313)
T 1v0l_A 150 W---IEVAFRTARAAD-PSAKLCYNDYNVENWTWAKTQAMYNMVRDFKQR 195 (313)
T ss_dssp H---HHHHHHHHHHHC-TTSEEEEEESSCCSTTSHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHhhC-CCCEEEEeccccccCChHHHHHHHHHHHHHHHC
Confidence 6 557777777766 78888888886432 2 4566666554
No 51
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=25.42 E-value=45 Score=33.28 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=27.2
Q ss_pred cCCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccC
Q psy14380 471 KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 471 ~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag 512 (513)
+..=+|-|. .|++.+++-.|.+++++++|++|||
T Consensus 124 ~l~G~NTD~--------~Gf~~~L~~~~~~l~gk~~lVlGAG 157 (312)
T 3t4e_A 124 YLRGYNTDG--------TGHIRAIKESGFDMRGKTMVLLGAG 157 (312)
T ss_dssp EEEEECHHH--------HHHHHHHHHTTCCCTTCEEEEECCS
T ss_pred EEEEeCCcH--------HHHHHHHHhcCCCcCCCEEEEECcC
Confidence 466778774 4566777777889999999999998
No 52
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=25.33 E-value=41 Score=32.72 Aligned_cols=34 Identities=32% Similarity=0.469 Sum_probs=26.2
Q ss_pred cCCeeccCCccHHHHHHHHHHHH-HHHhCCcCCcceEEEeccC
Q psy14380 471 KYCTFNDDIQGTASVAVAGLMAG-RRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 471 ~~~~~~dd~qgt~~~~~~~~~~~-~~~~~~~~~~~~~~~~gag 512 (513)
+..=+|-| ..|++.+ ++-.|.++++++++|+|||
T Consensus 95 ~l~G~NTD--------~~G~~~~lL~~~~~~l~~k~~lvlGaG 129 (272)
T 3pwz_A 95 RIVAENFD--------GIGLLRDIEENLGEPLRNRRVLLLGAG 129 (272)
T ss_dssp EEEEECCH--------HHHHHHHHHTTSCCCCTTSEEEEECCS
T ss_pred eEEEecCC--------HHHHHHHHHHHcCCCccCCEEEEECcc
Confidence 34556666 3567777 7777889999999999998
No 53
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}
Probab=24.47 E-value=2e+02 Score=30.67 Aligned_cols=85 Identities=16% Similarity=0.209 Sum_probs=60.2
Q ss_pred chhhHHHHHHHHHHHhhcCCceeeeeccCCCccH-H-HHHHHhhcc---CC-ee----------ccCCccHHHHHHHHHH
Q psy14380 428 EAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNA-F-RFLDKYRDK---YC-TF----------NDDIQGTASVAVAGLM 491 (513)
Q Consensus 428 ~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~-~-~~l~~~~~~---~~-~~----------~dd~qgt~~~~~~~~~ 491 (513)
.|-..|...||.++.+..||.+-|-=+|++..-. . -+.+.|+.. +. ++ ..-..-|+-=++.++-
T Consensus 148 ~el~r~~r~f~~eL~~~iGp~~DvpApDvGt~~~em~w~~~~y~~~~~~~~g~vTGKp~~~GGs~~r~~aTg~Gv~~~~~ 227 (456)
T 3r3j_A 148 NEILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREIGYLFGQYKKLKNSFEGVLTGKNIKWGGSNIRAEATGYGVVYFAE 227 (456)
T ss_dssp HHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTSCCCSCBSCCGGGTCCTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcCCCCCCCCHHHHHHHHHHHHhhcCcccceecCCcccccCCCCCCcccchHHHHHHH
Confidence 4566677789999999999999999999986431 1 144566532 21 11 1112246666677777
Q ss_pred HHHHHhCCcCCcceEEEeccC
Q psy14380 492 AGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~gag 512 (513)
++++..|.++++.|++|-|.|
T Consensus 228 ~~~~~~g~~l~g~~VaVQG~G 248 (456)
T 3r3j_A 228 NVLKDLNDNLENKKCLVSGSG 248 (456)
T ss_dssp HHHHTTTCCSTTCCEEEECCS
T ss_pred HHHHHcCCCccCCEEEEECCC
Confidence 788888999999999999988
No 54
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=24.42 E-value=51 Score=32.93 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=28.2
Q ss_pred cCCeeccCCccHHHHHHHHHHHHHHHhCCcCCcceEEEeccC
Q psy14380 471 KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 471 ~~~~~~dd~qgt~~~~~~~~~~~~~~~~~~~~~~~~~~~gag 512 (513)
+..=+|-| ..|++.+++-.|.+++++++|++|||
T Consensus 130 ~l~G~NTD--------~~Gf~~~L~~~~~~l~gk~~lVlGaG 163 (315)
T 3tnl_A 130 VLTGHITD--------GTGYMRALKEAGHDIIGKKMTICGAG 163 (315)
T ss_dssp EEEEECCH--------HHHHHHHHHHTTCCCTTSEEEEECCS
T ss_pred EEEEeCCC--------HHHHHHHHHHcCCCccCCEEEEECCC
Confidence 45668888 46777788778899999999999998
No 55
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=23.95 E-value=2.7e+02 Score=27.55 Aligned_cols=111 Identities=12% Similarity=0.091 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHHHHHHhhcccccccccc---------------cCC----------ccchhhcccccCceeeeecCCCc
Q psy14380 353 GEAYDELIDEFMKAVVKRYGQNTLIQFED---------------FGN----------HNAFRFLDKYRDKYCTFNDEGTN 407 (513)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~----------~~a~~~l~~~~~~~~~~~~~~~~ 407 (513)
|..+.+-+++.++.+ +..|.+++|.|-. +++ +.+..+|..+++...++.-+..-
T Consensus 55 g~~~~~~~~~~~~~A-~~~GlkV~ld~Hysd~WadPg~Q~~p~~W~~~~~~~~~~~~~yt~~vl~~l~~~g~~~~~v~vG 133 (332)
T 1hjs_A 55 GNYNLDYNIAIAKRA-KAAGLGVYIDFHYSDTWADPAHQTMPAGWPSDIDNLSWKLYNYTLDAANKLQNAGIQPTIVSIG 133 (332)
T ss_dssp CTTSHHHHHHHHHHH-HHTTCEEEEEECCSSSCCBTTBCBCCTTCCCSHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEES
T ss_pred CcCCHHHHHHHHHHH-HHCCCEEEEEeccCCCcCCccccCCccccccchHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEe
Confidence 433444455566655 6679999998632 121 00123444444333333223334
Q ss_pred ccccccCccc-ccccccccccchhhHHHHHHHHHHHhhcC-C--ceeeeeccCCCccHHH-HHHHh
Q psy14380 408 NEKLLKDPLY-VGLRQKRTTGEAYDELIDEFMKAVVKRYG-Q--NTLIQFEDFGNHNAFR-FLDKY 468 (513)
Q Consensus 408 ~~~~~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~v~~~~g-~--~~~~~~ed~~~~~~~~-~l~~~ 468 (513)
|| +.+..+. -|. -..-+.+.+|+.+-.++|++.++ | ..+||++.-.+...++ ++|++
T Consensus 134 NE-i~~g~~w~~g~---~~~~~~~~~l~~~~~~avR~~~~~p~~~v~ih~~~~~~~~~~~~~~d~~ 195 (332)
T 1hjs_A 134 NE-IRAGLLWPTGR---TENWANIARLLHSAAWGIKDSSLSPKPKIMIHLDNGWDWGTQNWWYTNV 195 (332)
T ss_dssp SS-GGGEETBTTEE---TTCHHHHHHHHHHHHHHHHTSCCSSCCEEEEEESCTTCHHHHHHHHHHH
T ss_pred ec-ccccccCcCCC---ccCHHHHHHHHHHHHHHHHHhccCCCCeEEEEeCCccchHHHHHHHHHH
Confidence 44 2222221 111 11346788999999999999983 4 4677877644444444 34544
No 56
>4ekj_A Beta-xylosidase; TIM-barrel fold, hemicellulase, hydrolase; 2.50A {Caulobacter vibrioides}
Probab=23.90 E-value=75 Score=32.27 Aligned_cols=69 Identities=23% Similarity=0.346 Sum_probs=44.3
Q ss_pred ChhhHHHHHHHHHHHHHHhhcccccccccccCCccchhhcccccCc-eeeeecCCCcccccccCcccccccccccccchh
Q psy14380 352 TGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDK-YCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAY 430 (513)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 430 (513)
.-+.+.+++.+|++.+..|||.+- .+.. +-+.||-- + +.+. .+.+-++|
T Consensus 129 ~~~~w~~~~~~~~~~~~~RYg~~~------------------v~~w~~EvwNEp~------~--~~~~----~~~~~~~y 178 (500)
T 4ekj_A 129 KLGPWRDLIDAFVHHLRARYGVEE------------------VRTWFFEVWNEPN------L--DGFW----EKADQAAY 178 (500)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHH------------------HHTSEEEESSCTT------S--TTTS----GGGCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhCccc------------------cceeEEEEEECCC------C--ccCC----CCCCHHHH
Confidence 357889999999999999997211 1111 22344421 0 0111 23467899
Q ss_pred hHHHHHHHHHHHhhcCCceee
Q psy14380 431 DELIDEFMKAVVKRYGQNTLI 451 (513)
Q Consensus 431 ~~~~~~~~~~v~~~~g~~~~~ 451 (513)
-++..++.+++|+.- |+..|
T Consensus 179 ~~l~~~~~~aik~~~-P~~~V 198 (500)
T 4ekj_A 179 FELYDVTARAIKAID-PSLRV 198 (500)
T ss_dssp HHHHHHHHHHHHHHC-TTSEE
T ss_pred HHHHHHHHHHHHhhC-Ccccc
Confidence 999999999999876 55444
No 57
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=23.31 E-value=2.4e+02 Score=23.21 Aligned_cols=85 Identities=13% Similarity=0.182 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHHHhhcc---cccccccccCCccchhhcccccCceeeeecCCCcccccccCccccccc--ccccccc
Q psy14380 354 EAYDELIDEFMKAVVKRYGQ---NTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLR--QKRTTGE 428 (513)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 428 (513)
+.-++|..++-+++.+..|- .+.|.+++ +..=...+..+.|+.+ =++ ..|++ |
T Consensus 14 ~~~~~l~~~ls~~~a~~lgKPe~~v~V~~~~----~~~m~fgGs~~p~a~v-----------------~i~~ig~~~~-e 71 (114)
T 4dh4_A 14 AQQDALLKDAEKAVADALGKPLSYVMVGYSQ----TGQMRFGGSSDPCAFI-----------------RVASIGGITS-S 71 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEEEE----CSCCCBTTBCSCCEEE-----------------EEEEESCCCH-H
T ss_pred hhHHHHHHHHHHHHHHHHCCChHHEEEEEeC----CceEEECCcCCCeEEE-----------------EEEEEcCCCH-H
Confidence 34478888999999988872 24555553 1111222222333322 222 13333 6
Q ss_pred hhhHHHHHHHHHHHhhcC---CceeeeeccCCCcc
Q psy14380 429 AYDELIDEFMKAVVKRYG---QNTLIQFEDFGNHN 460 (513)
Q Consensus 429 ~y~~~~~~~~~~v~~~~g---~~~~~~~ed~~~~~ 460 (513)
...++..++.+.+.++.| .+..|.|.|...+|
T Consensus 72 ~~~~l~~~i~~~l~~~Lgi~~~riyI~f~d~~~~~ 106 (114)
T 4dh4_A 72 TNCKIAAALSAACERHLGVPKNRIYTTFTNKSPSE 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECGGG
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEeCCHHH
Confidence 666777777777777766 56789999987665
No 58
>3emz_A Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 barrel, GH10 enzyme complex, hydrolase; HET: HXH; 2.08A {Bacillus SP} SCOP: c.1.8.3 PDB: 3emq_A* 3emc_A*
Probab=22.82 E-value=2.7e+02 Score=27.94 Aligned_cols=92 Identities=16% Similarity=0.351 Sum_probs=59.4
Q ss_pred CChhhHHHHHHHHHHHHHHhhcccccccccccCCccchhhcccccCceeeeecCCCcccc-cccCcccccccccccccch
Q psy14380 351 TTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEK-LLKDPLYVGLRQKRTTGEA 429 (513)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 429 (513)
.+.+...+.+.+++++|..||+- -=...-++||....+.. .+++.++ .+..|++
T Consensus 101 ~~~~~l~~~~~~~I~~v~~rYkg--------------------~i~~WDVvNE~~~~~~~~~~r~s~~-----~~~lG~~ 155 (331)
T 3emz_A 101 ASREMMLSRLKQHIDTVVGRYKD--------------------QIYAWDVVNEAIEDKTDLIMRDTKW-----LRLLGED 155 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTT--------------------TCSEEEEEECCBCSSTTCCBCCCHH-----HHHTCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCC--------------------CceEEEEeccccCCCCCccccCCch-----hhhcCHH
Confidence 45567788889999999999941 11235688888765532 1222211 1345776
Q ss_pred hhHHHHHHHHHHHhhcCCceeeeeccCCCccH------HHHHHHhhcc
Q psy14380 430 YDELIDEFMKAVVKRYGQNTLIQFEDFGNHNA------FRFLDKYRDK 471 (513)
Q Consensus 430 y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~~------~~~l~~~~~~ 471 (513)
| |.+..++.++. -|++.+-.-|+...+. .+++++.+++
T Consensus 156 ~---i~~aF~~Ar~a-dP~a~L~~NDyn~~~~~k~~~~~~~v~~l~~~ 199 (331)
T 3emz_A 156 Y---LVQAFNMAHEA-DPNALLFYNDYNETDPVKREKIYNLVRSLLDQ 199 (331)
T ss_dssp H---HHHHHHHHHHH-CTTSEEEEEESSCSSHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHhh-CCCceEEeccccccChHHHHHHHHHHHHHHHC
Confidence 6 44556666665 4889999999987653 4667777665
No 59
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Probab=22.76 E-value=56 Score=31.34 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhcCcccccceEEEecCC------------CceEEEeeCCC
Q psy14380 193 AVAGLMAGRRVTGKKISECRFLFLGAG------------EGRCIFASGSP 230 (513)
Q Consensus 193 aLAGlLaAlr~tg~~l~d~rivf~GAG------------~GkalfAsGSP 230 (513)
...|++.+++..+.++++++++|.||| .|++.++..++
T Consensus 111 d~~G~~~~L~~~~~~l~~k~vlV~GaGgiG~aia~~L~~~G~V~v~~r~~ 160 (287)
T 1nvt_A 111 DGIGARMALEEEIGRVKDKNIVIYGAGGAARAVAFELAKDNNIIIANRTV 160 (287)
T ss_dssp HHHHHHHHHHHHHCCCCSCEEEEECCSHHHHHHHHHHTSSSEEEEECSSH
T ss_pred CHHHHHHHHHHhCCCcCCCEEEEECchHHHHHHHHHHHHCCCEEEEECCH
No 60
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=21.96 E-value=62 Score=30.88 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.8
Q ss_pred HHHHHHHHhCCcCCcceEEEeccC
Q psy14380 489 GLMAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~gag 512 (513)
|++.+++-.|..++..+++|+|+|
T Consensus 115 G~~~~l~~~~~~~~~~~v~iiGaG 138 (275)
T 2hk9_A 115 GFLKSLKSLIPEVKEKSILVLGAG 138 (275)
T ss_dssp HHHHHHHHHCTTGGGSEEEEECCS
T ss_pred HHHHHHHHhCCCcCCCEEEEECch
Confidence 777777777888999999999998
No 61
>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A*
Probab=21.96 E-value=1.6e+02 Score=31.07 Aligned_cols=92 Identities=20% Similarity=0.274 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhhccccccccc---ccCCccchhhcccccCceeeeecCCCcccccccCcccccccccccccchhhHHH
Q psy14380 358 ELIDEFMKAVVKRYGQNTLIQFE---DFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELI 434 (513)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 434 (513)
+++.|+.+|++++ |.+.-+++- |.-+.+ .|.. ..++ .|- .+..-++|.+++
T Consensus 152 Dlv~El~~A~rk~-Glk~GlY~S~~~dW~~p~------~~~~----------~~~~-----~y~----~~~~~~~y~~~~ 205 (455)
T 2zxd_A 152 DLVGDLAKAVREA-GLRFGVYYSGGLDWRFTT------EPIR----------YPED-----LSY----IRPNTYEYADYA 205 (455)
T ss_dssp CHHHHHHHHHHHT-TCEEEEEEECSCCGGGCC------SCCC----------SGGG-----GGT----CSCCSHHHHHHH
T ss_pred ChHHHHHHHHHHc-CCeEEEEecCCccccCcc------cccc----------cccc-----ccc----CCCccHHHHHHH
Confidence 6889999999876 999999988 541111 1111 0011 111 112457899999
Q ss_pred HHHHHHHHhhcCCceeeeeccCCCc-----cHHHHHHHhhccC--Ceecc
Q psy14380 435 DEFMKAVVKRYGQNTLIQFEDFGNH-----NAFRFLDKYRDKY--CTFND 477 (513)
Q Consensus 435 ~~~~~~v~~~~g~~~~~~~ed~~~~-----~~~~~l~~~~~~~--~~~~d 477 (513)
..=+.-|..+|||. +| |=|.+-+ +.-++++.|++.. |+.||
T Consensus 206 ~~Ql~ELlt~Y~pd-~l-WfDg~~~~~~~w~~~~~~~~~~~~~P~~vvn~ 253 (455)
T 2zxd_A 206 YKQVMELVDLYLPD-VL-WNDMGWPEKGKEDLKYLFAYYYNKHPEGSVND 253 (455)
T ss_dssp HHHHHHHHHHHCCS-EE-EEESCCCGGGTTHHHHHHHHHHHHCTTCCBCS
T ss_pred HHHHHHHHhhcCCc-EE-EECCCCCccchhhHHHHHHHHHHhCCCEEEEc
Confidence 88888888999984 44 4476643 4457788888764 45553
No 62
>3niy_A Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.58A {Thermotoga petrophila rku-1} SCOP: c.1.8.3 PDB: 3nj3_A* 1vbr_A* 1vbu_A
Probab=21.28 E-value=2.6e+02 Score=28.19 Aligned_cols=90 Identities=16% Similarity=0.374 Sum_probs=58.7
Q ss_pred ChhhHHHHHHHHHHHHHHhhcccccccccccCCccchhhcccccCceeeeecCCCcccccccCcccccccccccccchhh
Q psy14380 352 TGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYD 431 (513)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 431 (513)
+.++..+.+.+++++|..||+- -=.-+.|+||....+-.+-+..|| +..|++|
T Consensus 119 ~~~~~~~~~~~~i~~v~~rY~g--------------------~i~~WDVvNE~~~~~g~~r~s~~~------~~lG~~~- 171 (341)
T 3niy_A 119 TKEELLNVLEDHIKTVVSHFKG--------------------RVKIWDVVNEAVSDSGTYRESVWY------KTIGPEY- 171 (341)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTT--------------------TCCEEEEEECCBCTTSSBCCCHHH------HHHCTHH-
T ss_pred CHHHHHHHHHHHHHHHHHHcCC--------------------CccEEEEecccccccccccccchh------hhcCHHH-
Confidence 4566777888999999999951 123468999987655432112221 3457655
Q ss_pred HHHHHHHHHHHhhcCCceeeeeccCCCcc--H-----HHHHHHhhcc
Q psy14380 432 ELIDEFMKAVVKRYGQNTLIQFEDFGNHN--A-----FRFLDKYRDK 471 (513)
Q Consensus 432 ~~~~~~~~~v~~~~g~~~~~~~ed~~~~~--~-----~~~l~~~~~~ 471 (513)
+.+..++.++.. |++.+-.-|+...+ + .+++++.+++
T Consensus 172 --i~~af~~Ar~~d-P~a~L~~NDyn~e~~~~k~~~~~~lv~~l~~~ 215 (341)
T 3niy_A 172 --IEKAFRWTKEAD-PDAILIYNDYSIEEINAKSNFVYNMIKELKEK 215 (341)
T ss_dssp --HHHHHHHHHHHC-TTSEEEEEESSCSSSSHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHC-CCceEEeeccccccCchHHHHHHHHHHHHHHC
Confidence 667777777765 88889999998532 2 4566666655
No 63
>3u7b_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA MAN; 1.94A {Fusarium oxysporum}
Probab=21.19 E-value=1.6e+02 Score=29.49 Aligned_cols=90 Identities=17% Similarity=0.278 Sum_probs=58.1
Q ss_pred ChhhHHHHHHHHHHHHHHhhcccccccccccCCccchhhcccccCceeeeecCCCcccccccCcccccccccccccchhh
Q psy14380 352 TGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYD 431 (513)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 431 (513)
+.+...+.+.+++++|..||+-+ =..+-++||....+-.+-+..|| +..|++|
T Consensus 100 ~~~~l~~~~~~~I~~v~~rY~g~--------------------i~~WDVvNE~~~~~g~~r~~~~~------~~~G~~~- 152 (327)
T 3u7b_A 100 NNQTLQAVMRDHINAVMGRYRGK--------------------CTHWDVVNEALNEDGTYRDSVFL------RVIGEAY- 152 (327)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTT--------------------CSEEEEEECCBCTTSSBCCCHHH------HHHCTTH-
T ss_pred CHHHHHHHHHHHHHHHHHHhCCC--------------------ceEEEEeccccCCCCCccccchh------hhccHHH-
Confidence 45677788899999999999411 12345788877655333222232 3457765
Q ss_pred HHHHHHHHHHHhhcCCceeeeeccCCCcc--H-----HHHHHHhhcc
Q psy14380 432 ELIDEFMKAVVKRYGQNTLIQFEDFGNHN--A-----FRFLDKYRDK 471 (513)
Q Consensus 432 ~~~~~~~~~v~~~~g~~~~~~~ed~~~~~--~-----~~~l~~~~~~ 471 (513)
|.+..++.++.. |++.+-.-|+.... + .+++++.+++
T Consensus 153 --i~~af~~Ar~~d-P~a~L~~Ndyn~e~~~~k~~~~~~~v~~l~~~ 196 (327)
T 3u7b_A 153 --IPIAFRMALAAD-PTTKLYYNDYNLEYGNAKTEGAKRIARLVKSY 196 (327)
T ss_dssp --HHHHHHHHHHHC-TTSEEEEEESSCTTCSHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHhHC-CCCeEEeccccccCCchhhHHHHHHHHHHHHC
Confidence 566677777765 88999999987432 2 3566666655
No 64
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Probab=20.57 E-value=2.7e+02 Score=29.03 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=60.6
Q ss_pred chhhHHHHHHHHHHHhhcCCceeeeeccCCCcc--HHHHHHHhhc---c--CCeeccC----------CccHHHHHHHHH
Q psy14380 428 EAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHN--AFRFLDKYRD---K--YCTFNDD----------IQGTASVAVAGL 490 (513)
Q Consensus 428 ~~y~~~~~~~~~~v~~~~g~~~~~~~ed~~~~~--~~~~l~~~~~---~--~~~~~dd----------~qgt~~~~~~~~ 490 (513)
+|-..|...|+.++.+.-||.+-|-=+|.+..- ---+.+.|.. . ..++..+ -.-||-=++-++
T Consensus 117 ~e~~r~~r~f~~~l~~~ig~~~dvpa~D~gt~~~~m~~~~~~y~~~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~~~~ 196 (415)
T 2tmg_A 117 RELERLSRRFFREIQVIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKVCA 196 (415)
T ss_dssp HHHHHHHHHHHHHTGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHSSCCCCSCSSCCGGGTCCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEeCCCCCCCHHHHHHHHHHHHHhhCCCCCCeEecCchhhCCCCCcCcchHHHHHHHH
Confidence 456778999999999999999999999998742 1113455533 1 1223222 233666666677
Q ss_pred HHHHHHhCCcCCcceEEEeccC
Q psy14380 491 MAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~gag 512 (513)
-.+++..|.+++..|+++.|.|
T Consensus 197 ~~~~~~~g~~l~g~~vaVqG~G 218 (415)
T 2tmg_A 197 GLAMDVLGIDPKKATVAVQGFG 218 (415)
T ss_dssp HHHHHHTTCCTTTCEEEEECCS
T ss_pred HHHHHHcCCCcCCCEEEEECCc
Confidence 7778889999999999999988
No 65
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=20.55 E-value=71 Score=30.38 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCcCCcceEEEeccC
Q psy14380 487 VAGLMAGRRVTGKKISECRFLFLGAG 512 (513)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~gag 512 (513)
..|++.+++-.|.+++..+++|+|||
T Consensus 103 ~~G~~~~L~~~~~~l~~k~vlViGaG 128 (271)
T 1nyt_A 103 GVGLLSDLERLSFIRPGLRILLIGAG 128 (271)
T ss_dssp HHHHHHHHHHHTCCCTTCEEEEECCS
T ss_pred HHHHHHHHHhcCcCcCCCEEEEECCc
Confidence 56777777777888999999999998
Done!