RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14380
(513 letters)
>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional.
Length = 581
Score = 269 bits (690), Expect = 1e-83
Identities = 90/132 (68%), Positives = 102/132 (77%), Gaps = 2/132 (1%)
Query: 277 EPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEK 336
E DV+ IVVTDGERILGLGDLG GMGIPVGKL LYTA GI+P LP+ IDVGTNNEK
Sbjct: 169 ERDVQVIVVTDGERILGLGDLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEK 228
Query: 337 LLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRD 396
LL DP Y+GLRQ R TGE YDEL+DEFM+AV +R+G L+QFEDF N NAFR L +YR
Sbjct: 229 LLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYRT 288
Query: 397 KYCTFND--EGT 406
+ FND +GT
Sbjct: 289 THLCFNDDIQGT 300
Score = 213 bits (544), Expect = 3e-62
Identities = 71/111 (63%), Positives = 85/111 (76%)
Query: 403 DEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 462
D GTNNEKLL DP Y+GLRQ R TGE YDEL+DEFM+AV +R+G L+QFEDF N NAF
Sbjct: 221 DVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAF 280
Query: 463 RFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
R L +YR + FNDDIQGTA+VA+AGL+A R TG +++ R LF GAGE
Sbjct: 281 RLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGE 331
Score = 126 bits (320), Expect = 3e-31
Identities = 41/61 (67%), Positives = 53/61 (86%)
Query: 69 DRNERLFFRLLSENVEELMPIVYTPTVGLACQKFGLIFRRPRGLFITIHDKGHCFDLLKN 128
+RNERLF+R+L +N+EEL+PIVYTPTVG ACQK+G +FRRPRGL+I++ DKG +LKN
Sbjct: 107 ERNERLFYRVLIDNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKN 166
Query: 129 W 129
W
Sbjct: 167 W 167
Score = 119 bits (301), Expect = 9e-29
Identities = 37/62 (59%), Positives = 45/62 (72%)
Query: 159 HFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGA 218
FEDF N NAFR L +YR + FNDDIQGTA+VA+AGL+A R TG +++ R LF GA
Sbjct: 270 QFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGA 329
Query: 219 GE 220
GE
Sbjct: 330 GE 331
Score = 104 bits (263), Expect = 6e-24
Identities = 34/58 (58%), Positives = 43/58 (74%)
Query: 220 EGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
GR IFASGSPF PV+ KT++PGQ NNAYIFPG+ LG + +G +T+D+ L AAE
Sbjct: 454 GGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAE 511
>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional.
Length = 563
Score = 250 bits (641), Expect = 2e-76
Identities = 86/145 (59%), Positives = 105/145 (72%), Gaps = 4/145 (2%)
Query: 264 IHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQC 323
I EDI A D++ IVVTDGERILG+GD G GMGIP+GKLSLYTA GI P +
Sbjct: 132 RDRI-EDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGIPIGKLSLYTACGGIDPART 190
Query: 324 LPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFG 383
LP+ +DVGTNNE+LL DPLY+G R R GE YDE +DEF++AV +R+ N L+QFEDF
Sbjct: 191 LPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFA 249
Query: 384 NHNAFRFLDKYRDKYCTFND--EGT 406
NA R L++YRD+ CTFND +GT
Sbjct: 250 QKNARRILERYRDEICTFNDDIQGT 274
Score = 192 bits (490), Expect = 1e-54
Identities = 64/110 (58%), Positives = 84/110 (76%), Gaps = 1/110 (0%)
Query: 403 DEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 462
D GTNNE+LL DPLY+G R R GE YDE +DEF++AV +R+ N L+QFEDF NA
Sbjct: 196 DVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKNAR 254
Query: 463 RFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512
R L++YRD+ CTFNDDIQGT +V +AGL+A ++TG+ +S+ R +FLGAG
Sbjct: 255 RILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAG 304
Score = 122 bits (308), Expect = 1e-29
Identities = 36/65 (55%), Positives = 48/65 (73%)
Query: 159 HFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGA 218
FEDF NA R L++YRD+ CTFNDDIQGT +V +AGL+A ++TG+ +S+ R +FLGA
Sbjct: 244 QFEDFAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGA 303
Query: 219 GEGRC 223
G C
Sbjct: 304 GSAGC 308
Score = 120 bits (304), Expect = 4e-29
Identities = 41/78 (52%), Positives = 55/78 (70%), Gaps = 6/78 (7%)
Query: 69 DRNERLFFRLLSENVEELMPIVYTPTVGLACQKFGLIFRRPRGLFITIHDKGHCFDLLKN 128
DRNE LF+RLLS+++EE+MPI+YTPTVG AC++F I+RRPRGLFI+ D+ D+L+N
Sbjct: 82 DRNETLFYRLLSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQN 141
Query: 129 WTITNEVIRDKIKMTKVT 146
IK+ VT
Sbjct: 142 AP------NRDIKLIVVT 153
Score = 94.0 bits (235), Expect = 2e-20
Identities = 31/58 (53%), Positives = 41/58 (70%)
Query: 220 EGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
+GR + A+GSPF PV+ KTY GQ NNAYIFPG+ LGVIA+G +T+ + + AA
Sbjct: 435 DGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAH 492
>gnl|CDD|215894 pfam00390, malic, Malic enzyme, N-terminal domain.
Length = 182
Score = 221 bits (565), Expect = 4e-70
Identities = 86/157 (54%), Positives = 99/157 (63%), Gaps = 14/157 (8%)
Query: 253 PGVALGVIA------------TGIHHI--TEDIFLIAAEPDVRAIVVTDGERILGLGDLG 298
P V A T I ++ +DI E DVR IVVTDGERILGLGDLG
Sbjct: 26 PTVGEACQAISEIYRRPRGLYTSIGNLGKIKDILKNWPEEDVRVIVVTDGERILGLGDLG 85
Query: 299 ACGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDE 358
GM I GKL+LYTA AGI P + LPI +DVGTNNEKLL DPLY+GLR KR GE YDE
Sbjct: 86 VAGMPIMEGKLALYTAFAGIDPSRVLPIVLDVGTNNEKLLNDPLYLGLRHKRVRGEEYDE 145
Query: 359 LIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYR 395
+DEF++AV + IQFEDFG NAF L++YR
Sbjct: 146 FVDEFVEAVKALFPPFGGIQFEDFGAPNAFEILERYR 182
Score = 118 bits (299), Expect = 3e-31
Identities = 41/67 (61%), Positives = 48/67 (71%)
Query: 403 DEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 462
D GTNNEKLL DPLY+GLR KR GE YDE +DEF++AV + IQFEDFG NAF
Sbjct: 116 DVGTNNEKLLNDPLYLGLRHKRVRGEEYDEFVDEFVEAVKALFPPFGGIQFEDFGAPNAF 175
Query: 463 RFLDKYR 469
L++YR
Sbjct: 176 EILERYR 182
Score = 106 bits (266), Expect = 1e-26
Identities = 35/65 (53%), Positives = 47/65 (72%)
Query: 69 DRNERLFFRLLSENVEELMPIVYTPTVGLACQKFGLIFRRPRGLFITIHDKGHCFDLLKN 128
+NE LF++LLS ++EE +PIVYTPTVG ACQ I+RRPRGL+ +I + G D+LKN
Sbjct: 2 GKNEVLFYKLLSTHIEEDLPIVYTPTVGEACQAISEIYRRPRGLYTSIGNLGKIKDILKN 61
Query: 129 WTITN 133
W +
Sbjct: 62 WPEED 66
Score = 41.1 bits (97), Expect = 4e-04
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 159 HFEDFGNHNAFRFLDKYR 176
FEDFG NAF L++YR
Sbjct: 165 QFEDFGAPNAFEILERYR 182
>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional.
Length = 559
Score = 203 bits (519), Expect = 8e-59
Identities = 78/131 (59%), Positives = 99/131 (75%), Gaps = 3/131 (2%)
Query: 278 PDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITIDVGTNNEKL 337
+V IV+TDG RILGLGDLGA GMGI +GKLSLY A GI P + LP+ +DVGTNNEKL
Sbjct: 147 DNVDVIVITDGSRILGLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKL 206
Query: 338 LKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDK 397
L DPLY+GLR+KR + Y EL+DEFM+AV R+ N ++QFEDF N++ F L++Y++K
Sbjct: 207 LNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNHCFDLLERYQNK 265
Query: 398 YCTFND--EGT 406
Y FND +GT
Sbjct: 266 YRCFNDDIQGT 276
Score = 154 bits (391), Expect = 6e-41
Identities = 58/110 (52%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Query: 403 DEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 462
D GTNNEKLL DPLY+GLR+KR + Y EL+DEFM+AV R+ N ++QFEDF N++ F
Sbjct: 198 DVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNHCF 256
Query: 463 RFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512
L++Y++KY FNDDIQGT +V AG + +++G E R +F GAG
Sbjct: 257 DLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAG 306
Score = 94.7 bits (236), Expect = 1e-20
Identities = 34/69 (49%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 69 DRNERLFFRLLSENVEELMPIVYTPTVGLACQKFGLIFRRPRGLFITIHDKGHCFDLLKN 128
D NE LF+ LL + ++EL+PI+YTPTVG ACQ + +F+R RGL+++ KG ++LKN
Sbjct: 84 DTNETLFYALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKN 143
Query: 129 WTITN-EVI 136
W N +VI
Sbjct: 144 WPYDNVDVI 152
Score = 87.0 bits (216), Expect = 4e-18
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 160 FEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219
FEDF N++ F L++Y++KY FNDDIQGT +V AG + +++G E R +F GAG
Sbjct: 247 FEDFSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAG 306
Score = 80.8 bits (200), Expect = 3e-16
Identities = 29/56 (51%), Positives = 36/56 (64%)
Query: 221 GRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAA 276
GR I ASGSPFPPV + KT P QGNN Y+FPGV LG +I +++ + AA
Sbjct: 435 GRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAA 490
>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion].
Length = 432
Score = 116 bits (293), Expect = 3e-28
Identities = 49/157 (31%), Positives = 64/157 (40%), Gaps = 34/157 (21%)
Query: 253 PGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGAC-GMGIPVGKLSL 311
PGVA A I + A VVTDG +LGLG++G G + GK L
Sbjct: 53 PGVAEACKA--ISEDPRKAYSYTA-RGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVL 109
Query: 312 YTALAGIKPHQCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRY 371
+ A AGI LPI +DVGTNNE I EF+KA+ +
Sbjct: 110 FKAFAGID---VLPIELDVGTNNE------------------------IIEFVKALEPTF 142
Query: 372 GQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDE--GT 406
G ++ D A +YR F+D+ GT
Sbjct: 143 G-GINLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGT 178
Score = 109 bits (275), Expect = 6e-26
Identities = 42/192 (21%), Positives = 68/192 (35%), Gaps = 51/192 (26%)
Query: 68 LDRNERLFFRLLSENVEELMPIVYTPTVGLACQKFGLIFRRPR------GLFITIHD--- 118
LD + L + + + +E +P+ YTP V AC+ R+ L + D
Sbjct: 28 LDPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAYSYTARGNLVAVVTDGTA 87
Query: 119 ------------------KGH---------CFDLLKNWTITNEVIRDKIKMTKVTKKIQE 151
K + + TN I + +K + T
Sbjct: 88 VLGLGNIGPLAGKPVMEGKAVLFKAFAGIDVLPIELD-VGTNNEIIEFVKALEPT----- 141
Query: 152 QRLQWYG----HFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKK 207
+G D A +YR F+DD QGTA V +A L+ ++TGKK
Sbjct: 142 -----FGGINLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNALKLTGKK 196
Query: 208 ISECRFLFLGAG 219
+ + + + GAG
Sbjct: 197 LKDQKIVINGAG 208
Score = 96.9 bits (242), Expect = 1e-21
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 434 IDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAG 493
I EF+KA+ +G ++ D A +YR F+DD QGTA V +A L+
Sbjct: 131 IIEFVKALEPTFG-GINLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNA 189
Query: 494 RRVTGKKISECRFLFLGAG 512
++TGKK+ + + + GAG
Sbjct: 190 LKLTGKKLKDQKIVINGAG 208
Score = 57.6 bits (140), Expect = 6e-09
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 218 AGEGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
G+G I A+G YP Q NN IFPG+ G + IT+++ + AAE
Sbjct: 314 WGDGAAIVATGRSD----------YPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAE 363
Score = 44.5 bits (106), Expect = 1e-04
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 10 MDRNERLFFRLLSENVEELMPIVYTPTVGLACQKSEKIKNYS 51
+D + L + + + +E +P+ YTP V AC+ + +
Sbjct: 28 LDPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKA 69
>gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic
enzyme (ME), subgroup 1. Malic enzyme (ME), a member of
the amino acid dehydrogenase (DH)-like domain family,
catalyzes the oxidative decarboxylation of L-malate to
pyruvate in the presence of cations (typically Mg++ or
Mn++) with the concomitant reduction of cofactor NAD+ or
NADP+. ME has been found in all organisms, and plays
important roles in diverse metabolic pathways such as
photosynthesis and lipogenesis. This enzyme generally
forms homotetramers. The conversion of malate to
pyruvate by ME typically involves oxidation of malate to
produce oxaloacetate, followed by decarboxylation of
oxaloacetate to produce pyruvate and CO2. This
subfamily consists of eukaryotic and bacterial ME.
Amino acid DH-like NAD(P)-binding domains are members of
the Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 279
Score = 108 bits (273), Expect = 1e-26
Identities = 39/58 (67%), Positives = 47/58 (81%)
Query: 220 EGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
+GR +FASGSPFPPV+ KTY PGQGNNAYIFPG+ LG I +G HIT+++FL AAE
Sbjct: 158 DGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAE 215
Score = 60.3 bits (147), Expect = 5e-10
Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 186 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGEG 221
IQGTA+VA+AGL+A R+TGK +S+ R LFLGAG
Sbjct: 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSA 36
Score = 59.5 bits (145), Expect = 9e-10
Identities = 23/35 (65%), Positives = 29/35 (82%)
Query: 479 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
IQGTA+VA+AGL+A R+TGK +S+ R LFLGAG
Sbjct: 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGS 35
>gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain.
Length = 255
Score = 102 bits (256), Expect = 1e-24
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 218 AGEGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
GR +FA+GSPFPPV++ ++ YP Q NN IFPG+ LG + IT+++FL AAE
Sbjct: 157 WTAGRALFATGSPFPPVELNGRSDYPNQVNNVLIFPGIGLGALDVRARRITDEMFLAAAE 216
Score = 62.2 bits (152), Expect = 8e-11
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 186 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 220
IQGTA+V +AGL+ ++TGK +S+ + +F GAG
Sbjct: 1 IQGTAAVVLAGLLNALKITGKPLSDQKIVFFGAGA 35
Score = 62.2 bits (152), Expect = 8e-11
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 479 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
IQGTA+V +AGL+ ++TGK +S+ + +F GAG
Sbjct: 1 IQGTAAVVLAGLLNALKITGKPLSDQKIVFFGAGA 35
>gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme.
Malic enzyme (ME), a member of the amino acid
dehydrogenase (DH)-like domain family, catalyzes the
oxidative decarboxylation of L-malate to pyruvate in the
presence of cations (typically Mg++ or Mn++) with the
concomitant reduction of cofactor NAD+ or NADP+. ME has
been found in all organisms and plays important roles in
diverse metabolic pathways such as photosynthesis and
lipogenesis. This enzyme generally forms homotetramers.
The conversion of malate to pyruvate by ME typically
involves oxidation of malate to produce oxaloacetate,
followed by decarboxylation of oxaloacetate to produce
pyruvate and CO2. Amino acid DH-like NAD(P)-binding
domains are members of the Rossmann fold superfamily and
include glutamate, leucine, and phenylalanine DHs,
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha-beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 254
Score = 102 bits (255), Expect = 1e-24
Identities = 43/60 (71%), Positives = 47/60 (78%)
Query: 218 AGEGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
A EGR IFASGSPF PV++ TY PGQGNN YIFPGVALGVI I HIT+D+FL AAE
Sbjct: 157 ATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAE 216
Score = 55.3 bits (133), Expect = 2e-08
Identities = 25/35 (71%), Positives = 28/35 (80%)
Query: 186 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 220
IQGTASVAVAGL+A +VT KKISE + LF GAG
Sbjct: 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGA 35
Score = 55.3 bits (133), Expect = 2e-08
Identities = 25/35 (71%), Positives = 28/35 (80%)
Query: 479 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
IQGTASVAVAGL+A +VT KKISE + LF GAG
Sbjct: 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGA 35
>gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain. Malic
enzymes (malate oxidoreductases) catalyse the oxidative
decarboxylation of malate to form pyruvate.
Length = 231
Score = 77.1 bits (191), Expect = 5e-16
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 221 GRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
I A+G YP Q NN IFPG+ LG + IT+++ L AAE
Sbjct: 145 TAAIVATGRSD----------YPNQVNNVLIFPGIFLGALDVRARRITDEMKLAAAE 191
Score = 60.1 bits (147), Expect = 3e-10
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 186 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 220
QGTA V +AGL+ ++TGKK+ + R + GAG
Sbjct: 1 QQGTAIVVLAGLLNALKITGKKLEDQRIVVNGAGA 35
Score = 60.1 bits (147), Expect = 3e-10
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 479 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
QGTA V +AGL+ ++TGKK+ + R + GAG
Sbjct: 1 QQGTAIVVLAGLLNALKITGKKLEDQRIVVNGAGA 35
>gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic
enzyme (ME), subgroup 2. Malic enzyme (ME), a member of
the amino acid dehydrogenase (DH)-like domain family,
catalyzes the oxidative decarboxylation of L-malate to
pyruvate in the presence of cations (typically Mg++ or
Mn++) with the concomitant reduction of cofactor NAD+ or
NADP+. ME has been found in all organisms, and plays
important roles in diverse metabolic pathways such as
photosynthesis and lipogenesis. This enzyme generally
forms homotetramers. The conversion of malate to
pyruvate by ME typically involves oxidation of malate to
produce oxaloacetate, followed by decarboxylation of
oxaloacetate to produce pyruvate and CO2. This
subfamily consists primarily of archaeal and bacterial
ME. Amino acid DH-like NAD(P)-binding domains are
members of the Rossmann fold superfamily and include
glutamate, leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 226
Score = 45.0 bits (107), Expect = 3e-05
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 187 QGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219
GTA V +AGL+ ++ GKKI E + + GAG
Sbjct: 2 HGTAIVTLAGLLNALKLVGKKIEEVKIVINGAG 34
Score = 45.0 bits (107), Expect = 3e-05
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 480 QGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512
GTA V +AGL+ ++ GKKI E + + GAG
Sbjct: 2 HGTAIVTLAGLLNALKLVGKKIEEVKIVINGAG 34
Score = 35.3 bits (82), Expect = 0.051
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 242 YPGQGNNAYIFPGV---ALGVIATGIHHITEDIFLIAAE 277
+P Q NN FPG+ AL V AT ITE++ L AAE
Sbjct: 154 FPNQVNNVLGFPGIFRGALDVRAT---KITEEMKLAAAE 189
>gnl|CDD|235976 PRK07232, PRK07232, bifunctional malic enzyme
oxidoreductase/phosphotransacetylase; Reviewed.
Length = 752
Score = 41.2 bits (98), Expect = 0.001
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 182 FNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219
F+DD GTA ++ A L+ + GKKI + + + GAG
Sbjct: 157 FHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAG 194
Score = 41.2 bits (98), Expect = 0.001
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 475 FNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512
F+DD GTA ++ A L+ + GKKI + + + GAG
Sbjct: 157 FHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAG 194
Score = 30.1 bits (69), Expect = 3.8
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 284 VVTDGERILGLGDLGACGMGIPV--GKLSLYTALAGI 318
V+++G +LGLG++GA PV GK L+ AGI
Sbjct: 67 VISNGTAVLGLGNIGALA-SKPVMEGKGVLFKKFAGI 102
>gnl|CDD|183798 PRK12861, PRK12861, malic enzyme; Reviewed.
Length = 764
Score = 39.1 bits (91), Expect = 0.006
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 451 IQFEDFGNHNAFRFLDKYRD--KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLF 508
I ED F K R+ K F+DD GTA A + G +V GK I E + +
Sbjct: 135 INLEDIKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVT 194
Query: 509 LGAG 512
GAG
Sbjct: 195 SGAG 198
Score = 37.2 bits (86), Expect = 0.022
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 159 HFEDFGNHNAFRFLDKYRD--KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFL 216
+ ED F K R+ K F+DD GTA A + G +V GK I E + +
Sbjct: 136 NLEDIKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTS 195
Query: 217 GAG 219
GAG
Sbjct: 196 GAG 198
Score = 30.2 bits (68), Expect = 2.8
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 284 VVTDGERILGLGDLGACGMGIPV--GKLSLYTALAGI 318
V+T+G +LGLG++GA PV GK L+ AGI
Sbjct: 71 VITNGTAVLGLGNIGALA-SKPVMEGKAVLFKKFAGI 106
>gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed.
Length = 763
Score = 38.3 bits (90), Expect = 0.009
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 182 FNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219
F+DD GTA + A L+ G ++ GK I + + + GAG
Sbjct: 165 FHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAG 202
Score = 38.3 bits (90), Expect = 0.009
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 475 FNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512
F+DD GTA + A L+ G ++ GK I + + + GAG
Sbjct: 165 FHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAG 202
Score = 33.3 bits (77), Expect = 0.37
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 24/77 (31%)
Query: 253 PGVALGVIATGIHHITEDIFLIAAEPDVRA---------IVVTDGERILGLGDLGACGMG 303
PGVA + IAA+P A VV++G +LGLG++G
Sbjct: 47 PGVAAPCLE------------IAADPANAARYTSRGNLVAVVSNGTAVLGLGNIGPLA-S 93
Query: 304 IPV--GKLSLYTALAGI 318
PV GK L+ AGI
Sbjct: 94 KPVMEGKAVLFKKFAGI 110
>gnl|CDD|216172 pfam00884, Sulfatase, Sulfatase.
Length = 332
Score = 35.5 bits (82), Expect = 0.056
Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 13/130 (10%)
Query: 331 GTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRF 390
E L KDP VG G DE + + + + + G+H +
Sbjct: 121 RNTGEDLYKDPEDVGYNCSG--GGVSDEALLDEALEFLDNNDKPFFLVLHTMGSHGPPYY 178
Query: 391 LDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAY-DELIDEFMKAVVKRYGQNT 449
D+Y +KY TF T +E+ L Y D+ I ++ + NT
Sbjct: 179 PDRYPEKYATFKPTSTCSEE--------QLLNSYDNSLLYTDDAIGRVLEKLENGLLDNT 230
Query: 450 LIQFEDFGNH 459
L+ + +H
Sbjct: 231 LVVY--TSDH 238
>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino
acid dehydrogenase-like proteins. Amino acid
dehydrogenase(DH)-like NAD(P)-binding domains are
members of the Rossmann fold superfamily and are found
in glutamate, leucine, and phenylalanine DHs (DHs),
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha-beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 86
Score = 32.0 bits (73), Expect = 0.13
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 188 GTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 220
TA+ AVA L A +VT K + + LGAGE
Sbjct: 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGE 33
Score = 32.0 bits (73), Expect = 0.13
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 481 GTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
TA+ AVA L A +VT K + + LGAGE
Sbjct: 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGE 33
>gnl|CDD|237854 PRK14898, PRK14898, DNA-directed RNA polymerase subunit A'';
Provisional.
Length = 858
Score = 31.8 bits (72), Expect = 1.1
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 404 EGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQ 452
E + + LKD L+ L ++ +E+++E + VV Y N L++
Sbjct: 11 EDLDLPRSLKDELFEKLSKRD---GVTEEMVEEIIDEVVSAY-LNALVE 55
Score = 29.9 bits (67), Expect = 4.0
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 331 GTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQ 378
+ + LKD L+ L ++ +E+++E + VV Y N L++
Sbjct: 12 DLDLPRSLKDELFEKLSKRD---GVTEEMVEEIIDEVVSAY-LNALVE 55
>gnl|CDD|107277 cd06282, PBP1_GntR_like_2, Ligand-binding domain of putative DNA
transcription repressors highly similar to that of the
repressor specific for gluconate (GntR) which is a
member of the LacI-GalR family of bacterial
transcription regulators. This group includes the
ligand-binding domain of putative DNA transcription
repressors highly similar to that of the repressor
specific for gluconate (GntR) which is a member of the
LacI-GalR family of bacterial transcription regulators.
The LacI-GalR family repressors are composed of two
functional domains: an N-terminal HTH (helix-turn-helix)
domain, which is responsible for the DNA-binding
specificity, and a C-terminal ligand-binding domain,
which is homologous to the sugar-binding domain of
ABC-type transport systems that contain the type I
periplasmic binding protein-like fold. As also observed
in the periplasmic binding proteins, the C-terminal
domain of the bacterial transcription repressor
undergoes a conformational change upon ligand binding
which in turn changes the DNA binding affinity of the
repressor.
Length = 266
Score = 30.3 bits (69), Expect = 1.8
Identities = 40/167 (23%), Positives = 51/167 (30%), Gaps = 51/167 (30%)
Query: 172 LDKYRDKYC-TFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGEGRCIFASG-- 228
LD R Y +ND G SV+V A R V G R +G
Sbjct: 75 LDAERVPYVLAYNDPQPGRPSVSVDNRAAARDVAQ--------ALAALGHRRIAMLAGRL 126
Query: 229 ----------------------SPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHH 266
+P PPV++ T AL + T
Sbjct: 127 AASDRARQRYAGYRAAMRAAGLAPLPPVEIPFNTAALPS----------ALLALLTAHPA 176
Query: 267 ITEDIFLIAAEPDVRAIVVTDGERILGL---GDLGACGM-GIPVGKL 309
T I D+ A+ V R LGL DL G GI +G+L
Sbjct: 177 PTA----IFCSNDLLALAVIRALRRLGLRVPDDLSVVGFDGIAIGRL 219
>gnl|CDD|219291 pfam07085, DRTGG, DRTGG domain. This presumed domain is about 120
amino acids in length. It is found associated with CBS
domains pfam00571, as well as the CbiA domain pfam01656.
The function of this domain is unknown. It is named the
DRTGG domain after some of the most conserved residues.
This domain may be very distantly related to a pair of
CBS domains. There are no significant sequence
similarities, but its length and association with CBS
domains supports this idea (Bateman A, pers. obs.).
Length = 105
Score = 28.9 bits (66), Expect = 2.3
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 13/61 (21%)
Query: 250 YIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDG----ERILGLGDLGACGMGIP 305
Y+ PG VI G DI L A + +++T G E +L L + G+P
Sbjct: 37 YLRPGDL--VITPGDR---SDIQLAALLAGIAGLILTGGFEPSEEVLKLAE----EAGLP 87
Query: 306 V 306
V
Sbjct: 88 V 88
>gnl|CDD|227274 COG4938, COG4938, Uncharacterized conserved protein [Function
unknown].
Length = 374
Score = 30.3 bits (68), Expect = 2.8
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 10/103 (9%)
Query: 398 YCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELI-DEFMKAVVKRYGQNTLIQFEDF 456
D T + L V R++R L+ +F +R G + D+
Sbjct: 92 GLNLQDLTTRGASGEELILTVKHRRERVKYILKWPLVSLKFEYLKAERRGPRNVYALFDY 151
Query: 457 ---------GNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGL 490
A + L Y D +++ T +V + L
Sbjct: 152 LRSRNLLGASGEGAVQTLGFYVDNIIRVAEELPITGNVRLVSL 194
>gnl|CDD|221381 pfam12018, DUF3508, Domain of unknown function (DUF3508). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is about 280
amino acids in length. This domain has two conserved
sequence motifs: GFC and GLL. This family is also known
as UPF0704.
Length = 281
Score = 29.7 bits (67), Expect = 3.7
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 21/70 (30%)
Query: 393 KYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQ 452
KY+DKY TF+ E +DP + ID + V K+ + LIQ
Sbjct: 230 KYKDKYYTFSSRDAAYE-FAEDP---------------QQYIDAVRE-VAKKNPE--LIQ 270
Query: 453 FEDFGNHNAF 462
F
Sbjct: 271 L--LRLQQQF 278
>gnl|CDD|220229 pfam09418, DUF2009, Protein of unknown function (DUF2009). This is
a eukaryotic family of proteins with unknown function.
Length = 458
Score = 29.6 bits (67), Expect = 4.8
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 142 MTKVTKKIQEQRLQWYG----HFEDFGNHNAFRFLDKYR 176
M ++ ++ Q++ +W G H D NA F+DKY
Sbjct: 319 MHRILQETQKKLGEWVGSSVIHLGDDAVPNALFFIDKYT 357
>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin. A subgroup of the
band 7 domain of flotillin (reggie) like proteins. This
subgroup group includes proteins similar to prohibitin
(a lipid raft-associated integral membrane protein).
Individual proteins of this band 7 domain family may
cluster to form membrane microdomains which may in turn
recruit multiprotein complexes. These microdomains in
addition to being stable scaffolds may also be also
dynamic units with their own regulatory functions.
Prohibitin is a mitochondrial inner-membrane protein
which may act as a chaperone for the stabilization of
mitochondrial proteins. Human prohibitin forms a
heter-oligomeric complex with Bap-37 (prohibitin 2, a
band 7 domain carrying homologue). This complex may
protect non-assembled membrane proteins against
proteolysis by the m-AAA protease. Prohibitin and Bap-37
yeast homologues have been implicated in yeast longevity
and, in the maintenance of mitochondrial morphology.
Length = 196
Score = 28.7 bits (65), Expect = 5.1
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 347 RQKRTTGEAYDE-----LIDEFMKAVVKRYGQNTLIQ 378
R + GE YDE +I+E +KAVV ++ LI
Sbjct: 80 RIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELIT 116
Score = 28.7 bits (65), Expect = 5.1
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 421 RQKRTTGEAYDE-----LIDEFMKAVVKRYGQNTLIQ 452
R + GE YDE +I+E +KAVV ++ LI
Sbjct: 80 RIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELIT 116
>gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA,
catalyzes the hydrolysis of the N-acetyl group of
N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to
glucosamine 6-phosphate and acetate. This is the first
committed step in the biosynthetic pathway to
amino-sugar-nucleotides, which is needed for cell wall
peptidoglycan and teichoic acid biosynthesis.
Deacetylation of N-acetylglucosamine is also important
in lipopolysaccharide synthesis and cell wall recycling.
Length = 374
Score = 29.1 bits (66), Expect = 6.1
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 249 AYIFPGVALGVIATGIHHITEDIFLIA--AEPDVRAIVVTDGERILGLGD 296
A V +IA G H+ +A A+ + ++VTD GL D
Sbjct: 232 ALSDDDVYAELIADG-IHVHPAAVRLAYRAKGADKIVLVTDAMAAAGLPD 280
>gnl|CDD|214664 smart00439, BAH, Bromo adjacent homology domain.
Length = 121
Score = 27.6 bits (62), Expect = 6.5
Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 139 KIKMTKVTKKIQEQRLQWYGHFEDFGNHNAFRFLDK----YRDKYCTFN-DDIQGTASVA 193
+I TK + + R++W+ E+ DK D+Y T DI G +V
Sbjct: 26 EIFETKKNSESKMVRVRWFYRPEET-VLEKAALFDKNEVFLSDEYDTVPLSDIIGKCNVL 84
Query: 194 VAGLMAGRRVTGKKISECRFLF 215
G R G F
Sbjct: 85 YKSDYPGLRPEGSIGEPDVFFC 106
>gnl|CDD|99977 cd03805, GT1_ALG2_like, This family is most closely related to the
GT1 family of glycosyltransferases. ALG2, a
1,3-mannosyltransferase, in yeast catalyzes the
mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate
and Man(1)GlcNAc(2)-dolichol diphosphate to form
Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of
this enzyme causes an abnormal accumulation of
Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol,
which is associated with a type of congenital disorders
of glycosylation (CDG), designated CDG-Ii, in humans.
Length = 392
Score = 28.7 bits (65), Expect = 7.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 117 HDKGHCFDLLKNWTITNEVIRDKI 140
HD HCF+ K+ T+ V D +
Sbjct: 40 HDPSHCFEETKDGTLPVRVRGDWL 63
>gnl|CDD|182463 PRK10440, PRK10440, iron-enterobactin transporter permease;
Provisional.
Length = 330
Score = 28.5 bits (64), Expect = 8.3
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 271 IFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGI 318
+ LIAA VR + R+L +GD AC +G+ V + L L +
Sbjct: 202 LMLIAAALLVRRM------RLLEMGDDTACALGVSVERSRLLLMLVAV 243
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome partitioning].
Length = 1480
Score = 29.1 bits (65), Expect = 8.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 201 RRVTGKKISECRFLFL 216
RR+ GK IS CR LFL
Sbjct: 1390 RRLRGKDISPCRLLFL 1405
Score = 29.1 bits (65), Expect = 8.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 494 RRVTGKKISECRFLFL 509
RR+ GK IS CR LFL
Sbjct: 1390 RRLRGKDISPCRLLFL 1405
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.142 0.427
Gapped
Lambda K H
0.267 0.0886 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,400,972
Number of extensions: 2810277
Number of successful extensions: 2783
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2772
Number of HSP's successfully gapped: 86
Length of query: 513
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 412
Effective length of database: 6,457,848
Effective search space: 2660633376
Effective search space used: 2660633376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.0 bits)