RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14380
(513 letters)
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase,
oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP:
c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A*
1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Length = 564
Score = 254 bits (651), Expect = 4e-78
Identities = 97/136 (71%), Positives = 110/136 (80%)
Query: 269 EDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITI 328
I E V+A+VVTDGERILGLGDLG GMGIPVGKL LYTA AGI+P +CLP+ I
Sbjct: 124 RSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCI 183
Query: 329 DVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 388
DVGT+N LLKDP Y+GL QKR + YD+LIDEFMKA+ RYG+NTLIQFEDFGNHNAF
Sbjct: 184 DVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAF 243
Query: 389 RFLDKYRDKYCTFNDE 404
RFL KYR+KYCTFND+
Sbjct: 244 RFLRKYREKYCTFNDD 259
Score = 189 bits (481), Expect = 1e-53
Identities = 80/111 (72%), Positives = 93/111 (83%)
Query: 403 DEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 462
D GT+N LLKDP Y+GL QKR + YD+LIDEFMKA+ RYG+NTLIQFEDFGNHNAF
Sbjct: 184 DVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAF 243
Query: 463 RFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
RFL KYR+KYCTFNDDIQGTA+VA+AGL+A ++V K ISE + LFLGAGE
Sbjct: 244 RFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGE 294
Score = 122 bits (307), Expect = 7e-30
Identities = 41/78 (52%), Positives = 57/78 (73%), Gaps = 6/78 (7%)
Query: 69 DRNERLFFRLLSENVEELMPIVYTPTVGLACQKFGLIFRRPRGLFITIHDKGHCFDLLKN 128
+RNE+LF+R+L +++E LMPIVYTPTVGLAC ++G IFRRP+GLFI+I D+GH ++ N
Sbjct: 70 ERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDN 129
Query: 129 WTITNEVIRDKIKMTKVT 146
W + +K VT
Sbjct: 130 WP------ENHVKAVVVT 141
Score = 102 bits (255), Expect = 3e-23
Identities = 47/62 (75%), Positives = 54/62 (87%)
Query: 159 HFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGA 218
FEDFGNHNAFRFL KYR+KYCTFNDDIQGTA+VA+AGL+A ++V K ISE + LFLGA
Sbjct: 233 QFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGA 292
Query: 219 GE 220
GE
Sbjct: 293 GE 294
Score = 102 bits (255), Expect = 3e-23
Identities = 36/59 (61%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 220 EGRCIFASGSPFPPVKMET-KTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
EGRC+FASGSPF PVK+ + + PGQGNN YIFPGVAL VI HI++ +FL AA+
Sbjct: 418 EGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAK 476
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent,
NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET:
NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB:
2aw5_A
Length = 555
Score = 253 bits (648), Expect = 8e-78
Identities = 95/136 (69%), Positives = 110/136 (80%)
Query: 269 EDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITI 328
+ E ++AIVVTDGERILGLGDLG GMGIPVGKL+LYTA G+KPHQCLP+ +
Sbjct: 122 ATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVML 181
Query: 329 DVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 388
DVGT+NE LLKDPLY+GLR KR G+AYD+L+DEFM+AV RYG N LIQFEDF N NAF
Sbjct: 182 DVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAF 241
Query: 389 RFLDKYRDKYCTFNDE 404
R L KYR+KYCTFND+
Sbjct: 242 RLLHKYRNKYCTFNDD 257
Score = 189 bits (481), Expect = 1e-53
Identities = 78/111 (70%), Positives = 90/111 (81%)
Query: 403 DEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 462
D GT+NE LLKDPLY+GLR KR G+AYD+L+DEFM+AV RYG N LIQFEDF N NAF
Sbjct: 182 DVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAF 241
Query: 463 RFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
R L KYR+KYCTFNDDIQGTASVAVAGL+A R+T ++S+ LF GAGE
Sbjct: 242 RLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGE 292
Score = 121 bits (306), Expect = 9e-30
Identities = 45/78 (57%), Positives = 57/78 (73%), Gaps = 6/78 (7%)
Query: 69 DRNERLFFRLLSENVEELMPIVYTPTVGLACQKFGLIFRRPRGLFITIHDKGHCFDLLKN 128
DRNE+LF+++L+ ++E MPIVYTPTVGLACQ +GL FRRPRGLFITIHD+GH +L++
Sbjct: 68 DRNEKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQS 127
Query: 129 WTITNEVIRDKIKMTKVT 146
W IK VT
Sbjct: 128 WP------ESVIKAIVVT 139
Score = 103 bits (258), Expect = 1e-23
Identities = 43/62 (69%), Positives = 49/62 (79%)
Query: 159 HFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGA 218
FEDF N NAFR L KYR+KYCTFNDDIQGTASVAVAGL+A R+T ++S+ LF GA
Sbjct: 231 QFEDFANANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGA 290
Query: 219 GE 220
GE
Sbjct: 291 GE 292
Score = 102 bits (256), Expect = 2e-23
Identities = 39/59 (66%), Positives = 48/59 (81%), Gaps = 1/59 (1%)
Query: 220 EGRCIFASGSPFPPVKMET-KTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
EGR IFASGSPF PV + + +T YPGQGNN+Y+FPGVALGVI+ G+ HI +D+FL AE
Sbjct: 413 EGRGIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAE 471
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative
decarboxylase, rossmann fold, MAla dehydrogenase; HET:
NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB:
1llq_A*
Length = 605
Score = 253 bits (649), Expect = 1e-77
Identities = 94/151 (62%), Positives = 110/151 (72%), Gaps = 1/151 (0%)
Query: 254 GVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYT 313
G+ + + + I I E DVRAIVVTDGERILGLGDLGA G+GIPVGKL+LY
Sbjct: 146 GLYITINDNSVSKI-YQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYV 204
Query: 314 ALAGIKPHQCLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQ 373
AL G++P CLP+ +DVGTNN LL DP Y+GLR KR G+ YD L+D FMKA K+YGQ
Sbjct: 205 ALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQ 264
Query: 374 NTLIQFEDFGNHNAFRFLDKYRDKYCTFNDE 404
TLIQFEDF N NAFR LDKY+DKY FND+
Sbjct: 265 KTLIQFEDFANPNAFRLLDKYQDKYTMFNDD 295
Score = 188 bits (480), Expect = 3e-53
Identities = 73/111 (65%), Positives = 83/111 (74%)
Query: 403 DEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 462
D GTNN LL DP Y+GLR KR G+ YD L+D FMKA K+YGQ TLIQFEDF N NAF
Sbjct: 220 DVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAF 279
Query: 463 RFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
R LDKY+DKY FNDDIQGTASV VAGL+ RVT K +S+ ++LF GAG
Sbjct: 280 RLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGA 330
Score = 112 bits (282), Expect = 1e-26
Identities = 40/80 (50%), Positives = 57/80 (71%), Gaps = 8/80 (10%)
Query: 69 DRNERLFFRLLSENVEELMPIVYTPTVGLACQKFGLIFRRPRGLFITIHDKG--HCFDLL 126
DRNE+LF+R++ ++V+ELMPIVYTPTVGLACQ FG I+R+P+GL+ITI+D + +L
Sbjct: 104 DRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQIL 163
Query: 127 KNWTITNEVIRDKIKMTKVT 146
NW + ++ VT
Sbjct: 164 SNWH------EEDVRAIVVT 177
Score = 105 bits (265), Expect = 2e-24
Identities = 34/60 (56%), Positives = 42/60 (70%)
Query: 218 AGEGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
G ++ASGSPFP ++ TY PGQGNNAYIFPGVALG I I H+ D+FL+AA+
Sbjct: 449 FTNGAALYASGSPFPNFELNGHTYKPGQGNNAYIFPGVALGTILFQIRHVDNDLFLLAAK 508
Score = 102 bits (257), Expect = 2e-23
Identities = 41/65 (63%), Positives = 47/65 (72%)
Query: 159 HFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGA 218
FEDF N NAFR LDKY+DKY FNDDIQGTASV VAGL+ RVT K +S+ ++LF GA
Sbjct: 269 QFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGA 328
Query: 219 GEGRC 223
G
Sbjct: 329 GAAST 333
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.1 bits (168), Expect = 2e-12
Identities = 85/597 (14%), Positives = 165/597 (27%), Gaps = 200/597 (33%)
Query: 5 QEILIMDRNE----RLFFRLLSEN-------VEELM----PIVYTPTVGLACQKSEKIKN 49
I++ RLF+ LLS+ VEE++ + +P Q S +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 50 YSSCR--------LVKKYSLSYGISPLDRNERLFFRLLSENVEELMP----IVY------ 91
Y R + KY++S R + + L + + EL P ++
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVS-------RLQP--YLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 92 -TPTVGLACQKFGLIFRRPRGLF-ITIHDKGHC--------------FDLLKNWTITNEV 135
T C + + + +F + + +C + + NWT ++
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNL---KNCNSPETVLEMLQKLLYQIDPNWTSRSD- 218
Query: 136 IRDKIKMTKVTKKIQEQRLQWYGHFEDFGNHNAFRFLDKYRDKYC--TFNDDIQ-----G 188
IK+ + + + +RL + N L ++ F ++
Sbjct: 219 HSSNIKLRIHSIQAELRRL-----LKSKPYENCLLVLLNVQNAKAWNAF--NLSCKILLT 271
Query: 189 TASVAVAGLMAGRRVTGKKISECRFLFLGAGEGRCIFAS--GSPFPPVKMETKTYYPGQG 246
T V ++ T + E + + + E T P
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYLDCRPQDLPREVLTTNP--- 327
Query: 247 NNAYIFPGVALGVIATGIH----------HITEDIFLIAAEPDVRAIVVTDGERILGLGD 296
L +IA I H+ D E + + + +
Sbjct: 328 --------RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK------ 373
Query: 297 LGACGMGIPVGKLSLYTALA----GIK-PHQCLPI------TIDVGTNNEKLLKDPLYVG 345
++ L+ P L + DV KL K L V
Sbjct: 374 --------------MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-VE 418
Query: 346 LRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYR--DKYCTFND 403
+ K +T ++ +K ++ H +D Y +
Sbjct: 419 KQPKESTISIPSIYLELKVKLE------------NEYALHR--SIVDHYNIPKTFD---- 460
Query: 404 EGTNNEKLLKDPL------YVG--LRQKRTTGEAYDEL----ID-EFMKAVVKRYG---- 446
++ L+ L ++G L+ E +D F++ ++
Sbjct: 461 ----SDDLIPPYLDQYFYSHIGHHLKNIEHP-ERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 447 -----QNTLIQFEDFG-----NHNAF--------RFLDK-----YRDKYCTFNDDIQ 480
NTL Q + + N + FL K KY D ++
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT---DLLR 569
Score = 46.8 bits (110), Expect = 2e-05
Identities = 73/489 (14%), Positives = 152/489 (31%), Gaps = 150/489 (30%)
Query: 81 ENVEELMPIVYTPTVGLACQKFGLIFRRP------RGLFITIHDKG----HCF--DLLK- 127
++V+++ + + ++ I LF T+ K F ++L+
Sbjct: 36 KDVQDMPKSILSK------EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 128 --NWTITNEVIRDKIKMTKVTKKIQEQRLQWYGHFEDFGNHNAFRF--LDKYRDKYCTFN 183
+ + + + ++ + + +T+ EQR + Y + F +N R K R
Sbjct: 90 NYKF-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL--- 145
Query: 184 DDIQGTASVAVAGLMAGRRVTGK-----------KISECRFLF----LGAGEGRCIFASG 228
+++ +V + G + G +GK K+ +C+ F L C
Sbjct: 146 -ELRPAKNVLIDG-VLG---SGKTWVALDVCLSYKV-QCKMDFKIFWLNLK--NC----N 193
Query: 229 SPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDI-----FLIAAEPDVRAI 283
SP ++M K Y N + ++ I I L+ ++P +
Sbjct: 194 SPETVLEMLQKLLYQIDPN------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 284 VVTD-------------GERIL------GLGD-LGACGMGIPVGK-----------LSLY 312
+V +IL + D L A SL
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 313 TALAGIKPHQCLPITIDVGTNNEKLLKDPLYVGL-----RQKRTTGEAYDEL-IDEFMKA 366
+P Q LP E L +P + + R T + + + D+
Sbjct: 308 LKYLDCRP-QDLP--------REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 367 VVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFN--DEGTN-NEKLLKDPLYVGLRQK 423
+ +++L E +YR + + + LL +
Sbjct: 359 I-----ESSLNVLEP----------AEYRKMFDRLSVFPPSAHIPTILL-----SLIWFD 398
Query: 424 RTTGEAYDELIDEFMK--AVVKRYGQNTL----IQFE-------DFGNHNAFRFLDKYRD 470
+ ++++ K V K+ ++T+ I E ++ H +D Y
Sbjct: 399 VIKSDV-MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR--SIVDHYNI 455
Query: 471 KYCTFNDDI 479
+DD+
Sbjct: 456 PKTFDSDDL 464
Score = 46.4 bits (109), Expect = 2e-05
Identities = 32/204 (15%), Positives = 69/204 (33%), Gaps = 47/204 (23%)
Query: 1 MSSHQEILIMDRNERLFFRLLSENVEEL-------MPIVYTPTVGLACQK----SEKIKN 49
+ H L D + L + L ++L P + + + + + K+
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-IIAESIRDGLATWDNWKH 349
Query: 50 YSSCRLVKKYSLSYGISPLDRNE-RLFFRLLS---ENV---EELMPIV------YTPTVG 96
+ +L S ++ L+ E R F LS + L+ ++ V
Sbjct: 350 VNCDKLTTIIESS--LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 97 LA-CQKFGLIFRRPRGLFITIHDKGHCFDLLKNWTITNEVIRDKIKMTKVTKKIQEQRLQ 155
+ K+ L+ ++P+ I+I +L + NE + + I +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPS--IYLELKV--KLENE--------YALHRSIVDH--- 452
Query: 156 WYGHFEDFGNHNAFRFLDKYRDKY 179
Y + F + + + Y D+Y
Sbjct: 453 -YNIPKTFDSDD---LIPPYLDQY 472
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba
histolytica}
Length = 487
Score = 48.4 bits (116), Expect = 3e-06
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 182 FNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219
++DD QGTASV +AGL+ ++ K I ECR +F+GAG
Sbjct: 191 WHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAG 228
Score = 48.4 bits (116), Expect = 3e-06
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 475 FNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512
++DD QGTASV +AGL+ ++ K I ECR +F+GAG
Sbjct: 191 WHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAG 228
Score = 43.8 bits (104), Expect = 1e-04
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 25/98 (25%)
Query: 253 PGVALGVIATGIHHITEDIF-------LIAAEPDVRAIVVTDGERILGLGDLGACGMGIP 305
PGV+ I + + VV+D R+LG GD+ G G+
Sbjct: 67 PGVSRISTN--IRDNNDSSLFYSLRGNFVG--------VVSDSTRVLGDGDVTPPG-GLG 115
Query: 306 V--GKLSLYTALAGIKPHQCLPITIDVGTNNEKLLKDP 341
V GK L L GI +PI ID + N++ DP
Sbjct: 116 VMEGKALLMKYLGGI---DAVPICID--SKNKEGKNDP 148
Score = 30.3 bits (69), Expect = 1.5
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 242 YPGQGNNAYIFPGV---ALGVIATGIHHITEDIFLIAAE 277
+P Q NN+ FPG+ AL V A IT+++ + A+
Sbjct: 353 FPNQVNNSVGFPGILKGALIVRAR---KITDNMAIAASR 388
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD,
structural genomics, NPPSFA; HET: NAD MES; 1.60A
{Pyrococcus horikoshii} PDB: 1ww8_A*
Length = 439
Score = 46.8 bits (112), Expect = 1e-05
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 182 FNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219
F+DD QGTA+V +AGL+ +V GKKISE GAG
Sbjct: 158 FHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAG 195
Score = 46.8 bits (112), Expect = 1e-05
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 475 FNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512
F+DD QGTA+V +AGL+ +V GKKISE GAG
Sbjct: 158 FHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAG 195
Score = 39.5 bits (93), Expect = 0.002
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 24/90 (26%)
Query: 249 AYIFPGVALGVIATGIHHITEDIF-------LIAAEPDVRAIVVTDGERILGLGDLGACG 301
AY PGVA I ++ L+A VV+DG RILGLG++G
Sbjct: 37 AYT-PGVAEPCKE--IARDPGKVYEYTSKGNLVA--------VVSDGSRILGLGNIGPLA 85
Query: 302 MGIPV--GKLSLYTALAGIKPHQCLPITID 329
G+PV GK L+ G+ PI I
Sbjct: 86 -GLPVMEGKALLFKRFGGV---DAFPIMIK 111
Score = 29.1 bits (66), Expect = 3.8
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 10/45 (22%)
Query: 242 YPGQGNNAYIFPGV---ALGVIATGIHHITEDIFLIAAEPDVRAI 283
YP Q NN FPG+ AL V A IT+ + +IAA +AI
Sbjct: 322 YPNQINNLLGFPGIFRGALDVRAR---TITDSM-IIAA---AKAI 359
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme,
structural genomics, JCS protein structure initiative,
PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3
PDB: 2hae_A*
Length = 388
Score = 46.0 bits (110), Expect = 2e-05
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 182 FNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219
F+DD QGTA V A + ++T KKI E + + G G
Sbjct: 164 FHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIG 201
Score = 46.0 bits (110), Expect = 2e-05
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 475 FNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512
F+DD QGTA V A + ++T KKI E + + G G
Sbjct: 164 FHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIG 201
Score = 39.8 bits (94), Expect = 0.002
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 21/79 (26%)
Query: 249 AYIFPGVALGVIATGIHHITEDIF-------LIAAEPDVRAIVVTDGERILGLGDLGACG 301
Y PGVA A E + +A VV+DG +LGLG++G G
Sbjct: 43 LYT-PGVADVARA--CAEDPEKTYVYTSRWNTVA--------VVSDGSAVLGLGNIGPYG 91
Query: 302 MGIPV--GKLSLYTALAGI 318
+PV GK L+ A A I
Sbjct: 92 -ALPVMEGKAFLFKAFADI 109
Score = 29.4 bits (67), Expect = 3.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 242 YPGQGNNAYIFPGV---ALGVIATGIHHITEDIFLIAAE 277
+P Q NN FPG+ A+ + IT+++ L A E
Sbjct: 320 HPNQVNNLLAFPGIMKGAVEKRSK----ITKNMLLSAVE 354
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase
(decarboxylating)); hypothetical protein, structural
genomics, PSI; 2.50A {Streptococcus pyogenes}
Length = 398
Score = 45.6 bits (109), Expect = 2e-05
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 182 FNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 219
F+DD GTA V +A + ++ K + E + G G
Sbjct: 160 FHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGG 197
Score = 45.6 bits (109), Expect = 2e-05
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 475 FNDDIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAG 512
F+DD GTA V +A + ++ K + E + G G
Sbjct: 160 FHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGG 197
Score = 41.0 bits (97), Expect = 7e-04
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 24/90 (26%)
Query: 249 AYIFPGVALGVIATGIHHITEDIF-------LIAAEPDVRAIVVTDGERILGLGDLGACG 301
AY PGVA A I + +A V++DG +LGLGD+G
Sbjct: 39 AYT-PGVASVSSA--IAKDKTLAYDLTTKKNTVA--------VISDGTAVLGLGDIGPEA 87
Query: 302 MGIPV--GKLSLYTALAGIKPHQCLPITID 329
+PV GK +L+ A AG+ +PI +D
Sbjct: 88 -AMPVMEGKAALFKAFAGV---DAIPIVLD 113
Score = 31.3 bits (72), Expect = 0.68
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 242 YPGQGNNAYIFPGV---ALGVIATGIHHITEDIFLIAAE 277
+P Q NN FPG+ AL A IT ++ + AA+
Sbjct: 315 FPNQINNVLAFPGIFRGALDARAK---TITVEMQIAAAK 350
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.021
Identities = 69/416 (16%), Positives = 121/416 (29%), Gaps = 162/416 (38%)
Query: 49 NYSSCR-LVKKY-SLSYGIS-PLDRNERLFFRL--LSENVEELMPIVYTPTVGLACQ--- 100
+ S R L + SL + + P FF L E +++P PT G A
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVP----TASFFIASQLQEQFNKILP---EPTEGFAADDEP 54
Query: 101 --KFGLIFRRPRGLFITIHDKGHCFDLLKNWTITNEVIRDKIK-MTKVTKKIQEQRLQWY 157
L+ + F+ G+ +++ V K+ +V
Sbjct: 55 TTPAELVGK-----FL-----GY---------VSSLVEPSKVGQFDQVLNLC-------L 88
Query: 158 GHFE-DF--GN--HN-AFRFLDKYRDKYCTFNDDIQGTASVAVAGLMAGRRVTGKKISEC 211
FE + GN H A + L + + I+ + A +MA R K S
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK---NYITARIMAKRPFDKKSNSA- 144
Query: 212 RFLFLGAGEGRCIFASGSPFPPVKMETKTY--YPGQGNN-AY---------IFPGVALGV 259
LF GEG + + GQGN Y + + +
Sbjct: 145 --LFRAVGEG---------------NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 260 IATGIHHITE----------------DI--------------FLIAAE---PDVRAIVVT 286
I ++E +I +L++ P I V
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP---LIGVI 244
Query: 287 D------GERILGL--GDL-----GA--CGMGIPVGKL--------SLYTALA------- 316
++LG G+L GA G+ S + ++
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 317 --GIKPHQCLPITIDVGTNNEKLLKDPLYVG-------LRQKRTTGEAYDELIDEF 363
G++ ++ P T + +L+D L L T E + +++
Sbjct: 305 FIGVRCYEAYPNT----SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Score = 36.2 bits (83), Expect = 0.031
Identities = 40/198 (20%), Positives = 72/198 (36%), Gaps = 43/198 (21%)
Query: 321 HQCLPITIDVGTN---NEKLLKDPLYVGLRQKRTTGEAYD-------ELIDEFM------ 364
H L + V T L++ L + T G A D EL+ +F+
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPE-PTEGFAADDEPTTPAELVGKFLGYVSSL 71
Query: 365 --KAVVKRYGQ---NTLIQFE-DF--GN--HNAFRFLDKYRDKYCTFNDEGTNNEKLLKD 414
+ V ++ Q L +FE + GN H L + D ++L+K+
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT------TLVKTKELIKN 125
Query: 415 PLYVGLRQKRTTGEAYDELID-EFMKAVVKRYGQNTLI-QFEDFGNHNAFRFLDKYRDKY 472
Y+ R +D+ + +AV + G L+ F GN + + ++ RD Y
Sbjct: 126 --YITARI--MAKRPFDKKSNSALFRAVGE--GNAQLVAIFGGQGNTDD--YFEELRDLY 177
Query: 473 CTFNDDIQGTASVAVAGL 490
T++ + + L
Sbjct: 178 QTYHVLVGDLIKFSAETL 195
Score = 36.2 bits (83), Expect = 0.034
Identities = 52/310 (16%), Positives = 86/310 (27%), Gaps = 125/310 (40%)
Query: 116 IHDKGHCFDLLKNWTITNEVIRDKIKMTKVTKKIQEQRLQWYGHFEDFGNHNAFRFLDKY 175
++G DL K ++ +D V + YG F LD
Sbjct: 1626 SQEQGMGMDLYKT----SKAAQD------VWNRADNHFKDTYG----------FSILDIV 1665
Query: 176 RD--KYCTFNDDIQGTASVAVAGLMAGRRVTGKKISE--CRFLFLGAGEGRCIFASGSPF 231
+ T G + GK+I E +F +G+ F
Sbjct: 1666 INNPVNLTI--------------HFGGEK--GKRIRENYSAMIFETIVDGKLKTEK--IF 1707
Query: 232 PPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITED----IFLIAAEPDVRAIVVTD 287
+ + +Y F G++ T+ + L+ +A
Sbjct: 1708 KEINEHSTSY---------TFRSEK-GLL-----SATQFTQPALTLME-----KAAF--- 1744
Query: 288 GERIL---GLGDLGACGMGIPVGKLSL--YTALA------------------GIKPHQCL 324
L GL A G SL Y ALA G+ +
Sbjct: 1745 --EDLKSKGLIPADATFAG-----HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAV 1797
Query: 325 PITIDVGTNNEKLLK-DPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFG 383
P ++G +N ++ +P V E ++ VV+R G+ T G
Sbjct: 1798 PRD-ELGRSNYGMIAINPGRVAA-----------SFSQEALQYVVERVGKRT-------G 1838
Query: 384 ------NHNA 387
N+N
Sbjct: 1839 WLVEIVNYNV 1848
Score = 31.9 bits (72), Expect = 0.64
Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 46/159 (28%)
Query: 354 EAYDELIDEFMKAVVKRYGQNTL-IQFED-------FGNHNAFRFLDKYRD-KYCTFNDE 404
+ ++ D K YG + L I + FG R + Y + T D
Sbjct: 1644 DVWNR-ADNHFK---DTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 405 GTNNEKLLKDPLYVGLRQKRTTGEAYDELID--EF----M----KAVVKRYGQNTLIQFE 454
EK+ K+ + T + L+ +F + KA + LI +
Sbjct: 1700 KLKTEKIFKE---INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD 1756
Query: 455 DF--GNHNAFRFLDKYRDKYCTFNDDIQGTASVAVAGLM 491
G H+ L +Y A ++A +M
Sbjct: 1757 ATFAG-HS----LGEY-------------AALASLADVM 1777
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 33.5 bits (77), Expect = 0.065
Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 24/121 (19%)
Query: 377 IQFEDFGNHNAFRFLDKYRDKYCTF--NDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELI 434
+ F F + L+ +++ + T + GT L+ + G L
Sbjct: 57 MGFNAF--KELWAALNAWKENFMTVDQDGSGTVEHHELRQAI-------GLMGY---RLS 104
Query: 435 DEFMKAVVKRYGQNTLIQFEDFGN--------HNAFRFLDKYRDKYCTFNDD--IQGTAS 484
+ + +VKRY +N I F+D+ + FR D + F D +QGT +
Sbjct: 105 PQTLTTIVKRYSKNGRIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMA 164
Query: 485 V 485
+
Sbjct: 165 I 165
Score = 32.3 bits (74), Expect = 0.16
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 361 DEFMKAVVKRYGQNTLIQFEDFGN--------HNAFRFLDKYRDKYCTFNDE 404
+ + +VKRY +N I F+D+ + FR D + F +
Sbjct: 105 PQTLTTIVKRYSKNGRIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYD 156
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 33.1 bits (76), Expect = 0.10
Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 22/110 (20%)
Query: 377 IQFEDFGNHNAFRFLDKYRDKYCTF--NDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELI 434
+ F +F + L+ +R + +F + GT + + L+ L L
Sbjct: 59 MGFNEF--KELWAVLNGWRQHFISFDSDRSGTVDPQELQKALT----------TMGFRLN 106
Query: 435 DEFMKAVVKRYGQNTLIQFEDFGN--------HNAFRFLDKYRDKYCTFN 476
+ + ++ KRY + I F+D+ ++FR D + F+
Sbjct: 107 PQTVNSIAKRYSTSGKITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFS 156
Score = 32.7 bits (75), Expect = 0.14
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 361 DEFMKAVVKRYGQNTLIQFEDFGN--------HNAFRFLDKYRDKYCTFNDE 404
+ + ++ KRY + I F+D+ ++FR D + F+ +
Sbjct: 107 PQTVNSIAKRYSTSGKITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFSYD 158
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 32.8 bits (75), Expect = 0.16
Identities = 27/127 (21%), Positives = 40/127 (31%), Gaps = 36/127 (28%)
Query: 377 IQFEDF--------GNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGE 428
+ F +F G F D R + L+ L T G
Sbjct: 90 MGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQE--------LQKAL-------TTMGF 134
Query: 429 AYDELIDEFMKAVVKRYGQNTLIQFEDFGN--------HNAFRFLDKYRDKYCTFNDD-- 478
L + + ++ KRY N I F+D+ ++FR D + F D
Sbjct: 135 R---LSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDF 191
Query: 479 IQGTASV 485
IQ SV
Sbjct: 192 IQCVMSV 198
Score = 32.4 bits (74), Expect = 0.21
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 361 DEFMKAVVKRYGQNTLIQFEDFGN--------HNAFRFLDKYRDKYCTFNDE 404
+ + ++ KRY N I F+D+ ++FR D + F +
Sbjct: 138 PQAVNSIAKRYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYD 189
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 30.7 bits (70), Expect = 0.65
Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 36/118 (30%)
Query: 377 IQFEDFGN--------HNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGE 428
I F++F + FR D D N+ ++ L ++G
Sbjct: 80 ITFDEFKDLHHFILSMREGFRKRDSSGDGRLDSNE--------VRAAL-------LSSGY 124
Query: 429 AYDELIDEFMKAVVKRYGQNT--LIQFEDF--------GNHNAFRFLDKYRDKYCTFN 476
+ ++ +A+++++ + + F+D+ N F F D+ R TF
Sbjct: 125 Q---VSEQTFQALMRKFDRQRRGSLGFDDYVELSIFVCRVRNVFAFYDRERTGQVTFT 179
Score = 27.6 bits (62), Expect = 7.3
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 10/54 (18%)
Query: 359 LIDEFMKAVVKRYGQNT--LIQFEDF--------GNHNAFRFLDKYRDKYCTFN 402
+ ++ +A+++++ + + F+D+ N F F D+ R TF
Sbjct: 126 VSEQTFQALMRKFDRQRRGSLGFDDYVELSIFVCRVRNVFAFYDRERTGQVTFT 179
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 30.0 bits (68), Expect = 1.4
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 15/97 (15%)
Query: 361 DEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGL 420
+EF++A+ Q AF LD+ D T +D L+
Sbjct: 93 EEFLRALRPPMSQAREAVIAA-----AFAKLDRSGDGVVTVDD--------LRGVYSGRA 139
Query: 421 RQKRTTGEAY-DELIDEFMKAVVKRYGQNTLIQFEDF 456
K +GE DE++ F+ + +F
Sbjct: 140 HPKVRSGEWTEDEVLRRFLDNFDSSEKDGQ-VTLAEF 175
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 29.3 bits (66), Expect = 2.1
Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 19/109 (17%)
Query: 377 IQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDE 436
+ FE+F + + K++ Y F+ + + + L A L +
Sbjct: 64 LGFEEF--KYLWNNIKKWQAIYKQFDVDRSG--TIGSSELPGAFEA------AGFHLNEH 113
Query: 437 FMKAVVKRYGQNTL-IQFEDFGN--------HNAFRFLDKYRDKYCTFN 476
+++RY + F++F + AF+ LDK N
Sbjct: 114 LYSMIIRRYSDEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVN 162
Score = 28.9 bits (65), Expect = 2.7
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 361 DEFMKAVVKRYGQNTL-IQFEDFGN--------HNAFRFLDKYRDKYCTFN 402
+ +++RY + F++F + AF+ LDK N
Sbjct: 112 EHLYSMIIRRYSDEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVN 162
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 28.4 bits (64), Expect = 3.6
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 361 DEFMKAVVKRYGQNT--LIQFEDF--------GNHNAFRFLDKYRDKYCTFNDE 404
D+F +++++ + I F+DF + FR D +D + + E
Sbjct: 109 DQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYE 162
Score = 28.4 bits (64), Expect = 4.2
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 435 DEFMKAVVKRYGQNT--LIQFEDF--------GNHNAFRFLDKYRDKYCTFNDD--IQGT 482
D+F +++++ + I F+DF + FR D +D + + + +
Sbjct: 109 DQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMV 168
Query: 483 ASV 485
S+
Sbjct: 169 FSI 171
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative
homoserine kinase, THRB, amino-acid biosynthesis,
ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Length = 298
Score = 28.4 bits (64), Expect = 5.4
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 190 ASVAVAGLMAGRRVTGKKISECRFLFLGA-GEG 221
++ VAG+ + +S+ + + A EG
Sbjct: 90 SAAVVAGIELANTLAELNLSKEEKVRIAAEIEG 122
>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics,
center for STR genomics of infectious diseases, csgid;
2.61A {Vibrio cholerae o1 biovar el tor}
Length = 212
Score = 28.3 bits (63), Expect = 5.5
Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 27/113 (23%)
Query: 178 KYCTFNDDIQGTASVAVAGLMAGRRVTGKKI---------SECRFLFLGAGEGRCIFASG 228
K+ ++ G + + R K+ S F+ G R + S
Sbjct: 29 KHSYYSGYYHGHSFDDCVRYLHPERDDVDKLVIGSFCSIGSGAVFMMAGNQGHRSDWIST 88
Query: 229 SPFPPVKMETKTYYPGQ---------------GNNAYIFPGVALG---VIATG 263
PF + G A I PGV +G +IA+
Sbjct: 89 FPFFYQDNDNFADARDGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASR 141
>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix;
3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB:
2xat_A*
Length = 212
Score = 28.0 bits (62), Expect = 6.1
Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 29/122 (23%)
Query: 178 KYCTFNDDIQGTASVAVAGLMAGRRVTGKKI---------SECRFLFLGAGEGRCIFASG 228
+Y ++ G + A + R K+ S F+ G R +AS
Sbjct: 27 RYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWAST 86
Query: 229 SPFPPVKMETKTYYPGQ----------------GNNAYIFPGVALG---VIATGIHHITE 269
PF + E G A PGV +G +I + +T
Sbjct: 87 FPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSR-ALVTG 145
Query: 270 DI 271
D+
Sbjct: 146 DV 147
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting;
1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A
1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A
1u0o_C
Length = 202
Score = 28.1 bits (63), Expect = 6.2
Identities = 4/32 (12%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 260 IATGIHHITEDIFLIAAEPDVR--AIVVTDGE 289
+ + + IF P+ A+++ +
Sbjct: 95 TSEVLKYTLFQIFSKIDRPEASRIALLLMASQ 126
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding,
cytoplasm, ligase, nucleotide-binding, phosphoprotein,
polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Length = 521
Score = 28.3 bits (64), Expect = 8.0
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 18/94 (19%)
Query: 133 NEVI---RDKIKMTKVTKKIQEQRLQWYGHFEDFG-NHNAFRFLDKYRDKYCTFNDDIQG 188
N+ I +++ Y H F + + F+ KY D
Sbjct: 6 NQYYKIRSQAIH------QLKVNGEDPYPH--KFHVDISLTDFIQKYSHLQ---PGDHLT 54
Query: 189 TASVAVAGLMAGRRVTGKKISECRFLFLGAGEGR 222
++ VAG + +R +G K+ F L +
Sbjct: 55 DITLKVAGRIHAKRASGGKLI---FYDLRGEGVK 85
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase,
hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp}
PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Length = 537
Score = 28.2 bits (63), Expect = 8.3
Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 16/111 (14%)
Query: 387 AFRFLDKYRDKYCTFNDE---GTNNEKLLKDPLYVGLRQ-KRTTGEA-YDELIDEFMKAV 441
A+ +L + + D G + L+D L R TG++ + + + +
Sbjct: 277 AYAWLGAHEMQPFHNPDGILTGEYGDAELRDELLWASCALLRMTGDSAWARVCEPLLDLD 336
Query: 442 ---------VKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDDIQGTA 483
V YG ++ + R +K + + D + A
Sbjct: 337 LPWELGWADVALYGVMDYLRTPRAAVSDDVR--NKVKSRLLRELDALAAMA 385
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.142 0.427
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,339,270
Number of extensions: 538945
Number of successful extensions: 1375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1363
Number of HSP's successfully gapped: 67
Length of query: 513
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 415
Effective length of database: 3,965,535
Effective search space: 1645697025
Effective search space used: 1645697025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)