RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14380
(513 letters)
>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic
enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Length = 294
Score = 216 bits (553), Expect = 2e-67
Identities = 93/141 (65%), Positives = 105/141 (74%), Gaps = 1/141 (0%)
Query: 263 GIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQ 322
+ I I E DVRAIVVTDGERILGLGDLGA G+GIPVGKL+LY AL G++P
Sbjct: 154 SVSKI-YQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKW 212
Query: 323 CLPITIDVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDF 382
CLP+ +DVGTNN LL DP Y+GLR KR G+ YD L+D FMKA K+YGQ TLIQFEDF
Sbjct: 213 CLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDF 272
Query: 383 GNHNAFRFLDKYRDKYCTFND 403
N NAFR LDKY+DKY FND
Sbjct: 273 ANPNAFRLLDKYQDKYTMFND 293
Score = 140 bits (355), Expect = 1e-38
Identities = 52/76 (68%), Positives = 57/76 (75%)
Query: 403 DEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 462
D GTNN LL DP Y+GLR KR G+ YD L+D FMKA K+YGQ TLIQFEDF N NAF
Sbjct: 219 DVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAF 278
Query: 463 RFLDKYRDKYCTFNDD 478
R LDKY+DKY FNDD
Sbjct: 279 RLLDKYQDKYTMFNDD 294
Score = 99.1 bits (247), Expect = 9e-24
Identities = 59/207 (28%), Positives = 92/207 (44%), Gaps = 43/207 (20%)
Query: 9 IMDRNERLFFRLLSENVEELMPIVYTPTVGLACQKSEKIKNYSS-CRLVKKYSLSYGISP 67
+ DRNE+LF+R++ ++V+ELMPIVYTPTVGLACQ N+ R K ++ +
Sbjct: 101 LQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQ------NFGYIYRKPKGLYITINDNS 154
Query: 68 LDRNERLFFRLLSENVEELMPIVYTPTVGLACQKFGLIFRRPRGLFITIH---------- 117
+ + ++ E+V + +V L G G+ I +
Sbjct: 155 VSKIYQILSNWHEEDVRAI--VVTDGERILGLGDLG-----AYGIGIPVGKLALYVALGG 207
Query: 118 -DKGHCFDL-LKNWTITNEVIRDKIKMTKVTKKIQEQRL-------------QWYG---- 158
C + L T +++ D + K+++ + ++
Sbjct: 208 VQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLI 267
Query: 159 HFEDFGNHNAFRFLDKYRDKYCTFNDD 185
FEDF N NAFR LDKY+DKY FNDD
Sbjct: 268 QFEDFANPNAFRLLDKYQDKYTMFNDD 294
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Length = 257
Score = 213 bits (544), Expect = 1e-66
Identities = 95/135 (70%), Positives = 109/135 (80%)
Query: 269 EDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITI 328
+ E ++AIVVTDGERILGLGDLG GMGIPVGKL+LYTA G+KPHQCLP+ +
Sbjct: 122 ATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVML 181
Query: 329 DVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 388
DVGT+NE LLKDPLY+GLR KR G+AYD+L+DEFM+AV RYG N LIQFEDF N NAF
Sbjct: 182 DVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAF 241
Query: 389 RFLDKYRDKYCTFND 403
R L KYR+KYCTFND
Sbjct: 242 RLLHKYRNKYCTFND 256
Score = 137 bits (348), Expect = 5e-38
Identities = 56/76 (73%), Positives = 63/76 (82%)
Query: 403 DEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 462
D GT+NE LLKDPLY+GLR KR G+AYD+L+DEFM+AV RYG N LIQFEDF N NAF
Sbjct: 182 DVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAF 241
Query: 463 RFLDKYRDKYCTFNDD 478
R L KYR+KYCTFNDD
Sbjct: 242 RLLHKYRNKYCTFNDD 257
Score = 99.8 bits (249), Expect = 3e-24
Identities = 41/62 (66%), Positives = 53/62 (85%)
Query: 69 DRNERLFFRLLSENVEELMPIVYTPTVGLACQKFGLIFRRPRGLFITIHDKGHCFDLLKN 128
DRNE+LF+++L+ ++E MPIVYTPTVGLACQ +GL FRRPRGLFITIHD+GH +L++
Sbjct: 68 DRNEKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQS 127
Query: 129 WT 130
W
Sbjct: 128 WP 129
Score = 93.3 bits (232), Expect = 4e-22
Identities = 60/205 (29%), Positives = 88/205 (42%), Gaps = 41/205 (20%)
Query: 9 IMDRNERLFFRLLSENVEELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPL 68
+ DRNE+LF+++L+ ++E MPIVYTPTVGLACQ +Y + L I
Sbjct: 66 LQDRNEKLFYKVLTSDIERFMPIVYTPTVGLACQ------HYGL-AFRRPRGLFITIHDR 118
Query: 69 DRNERLFFRLLSENV--------EELMPIVYTPT--VGLACQKFGLIFRRPRGLFITIHD 118
+ + E ++ + +G+ K L + G+
Sbjct: 119 GHIATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLAL-YTACGGV-----K 172
Query: 119 KGHCFDL-LKNWTITNEVIRDKIKMTKVTKKIQEQRLQW------------YG-----HF 160
C + L T +++D + + K+I+ Q YG F
Sbjct: 173 PHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQF 232
Query: 161 EDFGNHNAFRFLDKYRDKYCTFNDD 185
EDF N NAFR L KYR+KYCTFNDD
Sbjct: 233 EDFANANAFRLLHKYRNKYCTFNDD 257
>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic
enzyme {Human (Homo sapiens) [TaxId: 9606]}
Length = 259
Score = 209 bits (533), Expect = 7e-65
Identities = 97/135 (71%), Positives = 109/135 (80%)
Query: 269 EDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPVGKLSLYTALAGIKPHQCLPITI 328
I E V+A+VVTDGERILGLGDLG GMGIPVGKL LYTA AGI+P +CLP+ I
Sbjct: 124 RSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCI 183
Query: 329 DVGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAF 388
DVGT+N LLKDP Y+GL QKR + YD+LIDEFMKA+ RYG+NTLIQFEDFGNHNAF
Sbjct: 184 DVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAF 243
Query: 389 RFLDKYRDKYCTFND 403
RFL KYR+KYCTFND
Sbjct: 244 RFLRKYREKYCTFND 258
Score = 134 bits (339), Expect = 1e-36
Identities = 60/103 (58%), Positives = 68/103 (66%), Gaps = 7/103 (6%)
Query: 376 LIQFEDFGNHNAFRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELID 435
L + R L D GT+N LLKDP Y+GL QKR + YD+LID
Sbjct: 164 LCLYTACAGIRPDRCL-------PVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLID 216
Query: 436 EFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDD 478
EFMKA+ RYG+NTLIQFEDFGNHNAFRFL KYR+KYCTFNDD
Sbjct: 217 EFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDD 259
Score = 99.8 bits (249), Expect = 3e-24
Identities = 41/78 (52%), Positives = 57/78 (73%), Gaps = 6/78 (7%)
Query: 69 DRNERLFFRLLSENVEELMPIVYTPTVGLACQKFGLIFRRPRGLFITIHDKGHCFDLLKN 128
+RNE+LF+R+L +++E LMPIVYTPTVGLAC ++G IFRRP+GLFI+I D+GH ++ N
Sbjct: 70 ERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDN 129
Query: 129 WTITNEVIRDKIKMTKVT 146
W + +K VT
Sbjct: 130 WP------ENHVKAVVVT 141
Score = 93.7 bits (233), Expect = 3e-22
Identities = 68/206 (33%), Positives = 93/206 (45%), Gaps = 43/206 (20%)
Query: 9 IMDRNERLFFRLLSENVEELMPIVYTPTVGLACQKSEKIKNYSSCRLVKKYSLSYGISPL 68
I +RNE+LF+R+L +++E LMPIVYTPTVGLAC Y + ++ + IS
Sbjct: 68 IQERNEKLFYRILQDDIESLMPIVYTPTVGLACS------QYGH--IFRRPKGLF-ISIS 118
Query: 69 DRNE-------------RLFFRLLSENVEEL-------MPIVYTPTVGLACQ--KFGLIF 106
DR + E + L M I VG C I
Sbjct: 119 DRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP----VGKLCLYTACAGI- 173
Query: 107 RRPRGLFITIHDKGHCFDLLKN---WTITNEVIRDKIKMTKVTKKIQEQRLQWYG----H 159
R R L + I LLK+ + + R + + + ++ ++
Sbjct: 174 RPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQ 233
Query: 160 FEDFGNHNAFRFLDKYRDKYCTFNDD 185
FEDFGNHNAFRFL KYR+KYCTFNDD
Sbjct: 234 FEDFGNHNAFRFLRKYREKYCTFNDD 259
>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic
enzyme {Human (Homo sapiens) [TaxId: 9606]}
Length = 294
Score = 82.3 bits (203), Expect = 5e-18
Identities = 36/59 (61%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 220 EGRCIFASGSPFPPVKMET-KTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
EGRC+FASGSPF PVK+ + + PGQGNN YIFPGVAL VI HI++ +FL AA+
Sbjct: 159 EGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAK 217
Score = 58.5 bits (141), Expect = 4e-10
Identities = 23/35 (65%), Positives = 29/35 (82%)
Query: 186 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 220
IQGTA+VA+AGL+A ++V K ISE + LFLGAGE
Sbjct: 1 IQGTAAVALAGLLAAQKVISKPISEHKILFLGAGE 35
Score = 58.5 bits (141), Expect = 4e-10
Identities = 23/35 (65%), Positives = 29/35 (82%)
Query: 479 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
IQGTA+VA+AGL+A ++V K ISE + LFLGAGE
Sbjct: 1 IQGTAAVALAGLLAAQKVISKPISEHKILFLGAGE 35
>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic
enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Length = 308
Score = 77.3 bits (190), Expect = 2e-16
Identities = 34/60 (56%), Positives = 42/60 (70%)
Query: 218 AGEGRCIFASGSPFPPVKMETKTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
G ++ASGSPFP ++ TY PGQGNNAYIFPGVALG I I H+ D+FL+AA+
Sbjct: 154 FTNGAALYASGSPFPNFELNGHTYKPGQGNNAYIFPGVALGTILFQIRHVDNDLFLLAAK 213
Score = 58.8 bits (142), Expect = 4e-10
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 186 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 220
IQGTASV VAGL+ RVT K +S+ ++LF GAG
Sbjct: 1 IQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGA 35
Score = 58.8 bits (142), Expect = 4e-10
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 479 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
IQGTASV VAGL+ RVT K +S+ ++LF GAG
Sbjct: 1 IQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGA 35
>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic
enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Length = 298
Score = 73.1 bits (179), Expect = 7e-15
Identities = 39/59 (66%), Positives = 48/59 (81%), Gaps = 1/59 (1%)
Query: 220 EGRCIFASGSPFPPVKMET-KTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAE 277
EGR IFASGSPF PV + + +T YPGQGNN+Y+FPGVALGVI+ G+ HI +D+FL AE
Sbjct: 156 EGRGIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAE 214
Score = 58.1 bits (140), Expect = 5e-10
Identities = 22/35 (62%), Positives = 27/35 (77%)
Query: 186 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 220
IQGTASVAVAGL+A R+T ++S+ LF GAGE
Sbjct: 1 IQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGE 35
Score = 58.1 bits (140), Expect = 5e-10
Identities = 22/35 (62%), Positives = 27/35 (77%)
Query: 479 IQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
IQGTASVAVAGL+A R+T ++S+ LF GAGE
Sbjct: 1 IQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGE 35
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme)
{Thermotoga maritima [TaxId: 2336]}
Length = 222
Score = 60.5 bits (146), Expect = 5e-11
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 185 DIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGEG 221
D QGTA V A + ++T KKI E + + G G
Sbjct: 1 DQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAA 37
Score = 60.1 bits (145), Expect = 5e-11
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 478 DIQGTASVAVAGLMAGRRVTGKKISECRFLFLGAGE 513
D QGTA V A + ++T KKI E + + G G
Sbjct: 1 DQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGA 36
Score = 40.4 bits (94), Expect = 2e-04
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 239 KTYYPGQGNNAYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERIL 292
++ +P Q NN FPG+ G + IT+++ L A E + + ERI+
Sbjct: 151 RSDHPNQVNNLLAFPGIMKGAVEKR-SKITKNMLLSAVE-AIARSCEPEPERII 202
>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme)
{Thermotoga maritima [TaxId: 2336]}
Length = 154
Score = 37.8 bits (88), Expect = 7e-04
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 249 AYIFPGVALGVIATGIHHITEDIFLIAAEPDVRAIVVTDGERILGLGDLGACGMGIPV-- 306
Y PGVA +A E ++ + + VV+DG +LGLG++G G +PV
Sbjct: 31 LYT-PGVA--DVARACAEDPEKTYVYTSRWN-TVAVVSDGSAVLGLGNIGPYG-ALPVME 85
Query: 307 GKLSLYTALAGIKPHQCLPITIDVGTNNE 335
GK L+ A A I PI + +
Sbjct: 86 GKAFLFKAFADID---AFPICLSESEEEK 111
>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId:
9606]}
Length = 165
Score = 36.1 bits (83), Expect = 0.004
Identities = 27/150 (18%), Positives = 45/150 (30%), Gaps = 22/150 (14%)
Query: 346 LRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEG 405
T E + + + + F F A K + G
Sbjct: 28 SGINGTYSPFSLETCRIMIAMLDR--DHTGKMGFNAFKELWAALNAWKENFMTVDQDGSG 85
Query: 406 TNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGN------- 458
T L+ + G L + + +VKRY +N I F+D+
Sbjct: 86 TVEHHELRQAI----------GLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVACCVKLRA 135
Query: 459 -HNAFRFLDKYRDKYCTFNDD--IQGTASV 485
+ FR D + F D +QGT ++
Sbjct: 136 LTDFFRKRDHLQQGSANFIYDDFLQGTMAI 165
>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal
domain (domain IV) {Rat (Rattus norvegicus), mu-type
[TaxId: 10116]}
Length = 188
Score = 30.1 bits (67), Expect = 0.47
Identities = 22/158 (13%), Positives = 48/158 (30%), Gaps = 21/158 (13%)
Query: 329 DVGTNNEKLLKDPL-YVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNA 387
D + K L+ L + + K + M ++ R G N + +F
Sbjct: 32 DDMEISVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRDG-NGKLGLVEFNILWN 90
Query: 388 FRFLDKYRDKYCTFNDEGTNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQ 447
+ + G+ + ++ + A +L + + +V R+
Sbjct: 91 RIRNYLTIFRKFDLDKSGSMSAYEMRMAI----------EAAGFKLPCQLHQVIVARFAD 140
Query: 448 NTL-IQFEDF--------GNHNAFRFLDKYRDKYCTFN 476
+ L I F++F F+ LD +
Sbjct: 141 DELIIDFDNFVRCLVRLEILFKIFKQLDPENTGTIQLD 178
Score = 27.4 bits (60), Expect = 3.2
Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 16/95 (16%)
Query: 105 IFRRPRGLFITIHDKGHCFDLLKNWTITNEVIRDKIK--MTKVTKKIQEQRLQWYGH--- 159
F FDL K+ +++ +R I+ K+ ++ + + +
Sbjct: 84 EFNILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARFADDEL 143
Query: 160 ---FEDF--------GNHNAFRFLDKYRDKYCTFN 183
F++F F+ LD +
Sbjct: 144 IIDFDNFVRCLVRLEILFKIFKQLDPENTGTIQLD 178
Score = 27.0 bits (59), Expect = 4.2
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 354 EAYDELIDEFMKAVVKRYGQNTL-IQFEDF--------GNHNAFRFLDKYRDKYCTFNDE 404
A +L + + +V R+ + L I F++F F+ LD +
Sbjct: 121 AAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILFKIFKQLDPENTGTIQLDLI 180
>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 29.7 bits (66), Expect = 0.52
Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 20/141 (14%)
Query: 346 LRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGNHNAFRFLDKYRDKYCTFNDEG 405
E + + + + + F +F A + + G
Sbjct: 35 SGIAGGYKPFNLETCRLMVSMLDR--DMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSG 92
Query: 406 TNNEKLLKDPLYVGLRQKRTTGEAYDELIDEFMKAVVKRYGQNTLIQFEDFGN------- 458
T + + L+ L L + + ++ KRY N I F+D+
Sbjct: 93 TVDPQELQKAL----------TTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLRA 142
Query: 459 -HNAFRFLDKYRDKYCTFNDD 478
++FR D + F D
Sbjct: 143 LTDSFRRRDTAQQGVVNFPYD 163
>d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 452
Score = 27.9 bits (61), Expect = 3.2
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 143 TKVTKKIQEQRLQWYGHFEDFGNHNAFRFLDKYRDKYC-TFNDDIQGTASVAVAGLMAGR 201
T+V + E ++ F ++ N+ F + Y Y T + S+ + GL G
Sbjct: 119 TEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGN 178
Query: 202 RVTG 205
++
Sbjct: 179 GLSS 182
>d1f1ma_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease
spirochete (Borrelia burgdorferi), different strains
[TaxId: 139]}
Length = 162
Score = 26.2 bits (58), Expect = 7.1
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 360 IDEFMKAVVKRYGQNTLIQFEDFGNHN 386
IDE KA+ K+ + ++ +HN
Sbjct: 30 IDELAKAIGKKIKSDVS--LDNEADHN 54
Score = 26.2 bits (58), Expect = 7.1
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 434 IDEFMKAVVKRYGQNTLIQFEDFGNHN 460
IDE KA+ K+ + ++ +HN
Sbjct: 30 IDELAKAIGKKIKSDVS--LDNEADHN 54
>d1sbpa_ c.94.1.1 (A:) Sulphate-binding protein {Salmonella
typhimurium [TaxId: 90371]}
Length = 309
Score = 26.4 bits (57), Expect = 8.7
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 351 TTGEAYDELIDEFMKAVVKRYGQNTLIQF 379
T E Y++ F + G N +I
Sbjct: 12 PTRELYEQYNKAFSAHWKQETGDNVVIDQ 40
Score = 26.4 bits (57), Expect = 8.7
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 425 TTGEAYDELIDEFMKAVVKRYGQNTLIQF 453
T E Y++ F + G N +I
Sbjct: 12 PTRELYEQYNKAFSAHWKQETGDNVVIDQ 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.142 0.427
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,035,934
Number of extensions: 104294
Number of successful extensions: 360
Number of sequences better than 10.0: 1
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 50
Length of query: 513
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 424
Effective length of database: 1,185,626
Effective search space: 502705424
Effective search space used: 502705424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)