BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14383
         (287 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3T5P|A Chain A, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|B Chain B, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|C Chain C, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|D Chain D, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|E Chain E, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|F Chain F, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|G Chain G, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|H Chain H, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|I Chain I, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|J Chain J, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|K Chain K, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
 pdb|3T5P|L Chain L, Crystal Structure Of A Putative Diacylglycerol Kinase From
           Bacillus Anthracis Str. Sterne
          Length = 306

 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 13/106 (12%)

Query: 4   DGRKGRGHHFPHFVDKALRLLNLRQVVEEIETSVMSSMSCTACKAGVGLLQYYIKSGRTV 63
           D  K  G HF +F    L        V E+  ++ +       KA +G + YY+ + RTV
Sbjct: 133 DVAKANGQHFLNFWGIGL--------VSEVSNNIDAEE-----KAKLGKIGYYLSTIRTV 179

Query: 64  ADIEKMSYKFCVTFQTPRGEVVYVLKRVKLTPEEVCSFVIGDACDD 109
            + E    K     Q    E V V          + SF+    CDD
Sbjct: 180 KNAETFPVKITYDGQVYEDEAVLVXVGNGEYLGGIPSFIPNVKCDD 225


>pdb|3S40|A Chain A, The Crystal Structure Of A Diacylglycerol Kinases From
           Bacillus Anthracis Str. Sterne
 pdb|3S40|B Chain B, The Crystal Structure Of A Diacylglycerol Kinases From
           Bacillus Anthracis Str. Sterne
 pdb|3S40|C Chain C, The Crystal Structure Of A Diacylglycerol Kinases From
           Bacillus Anthracis Str. Sterne
 pdb|3S40|D Chain D, The Crystal Structure Of A Diacylglycerol Kinases From
           Bacillus Anthracis Str. Sterne
          Length = 304

 Score = 28.9 bits (63), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 13/106 (12%)

Query: 4   DGRKGRGHHFPHFVDKALRLLNLRQVVEEIETSVMSSMSCTACKAGVGLLQYYIKSGRTV 63
           D  K  G HF +F    L        V E+  ++ +       KA +G + YY+ + RTV
Sbjct: 129 DVAKANGQHFLNFWGIGL--------VSEVSNNIDAEE-----KAKLGKIGYYLSTIRTV 175

Query: 64  ADIEKMSYKFCVTFQTPRGEVVYVLKRVKLTPEEVCSFVIGDACDD 109
            + E    K     Q    E V V          + SF+    CDD
Sbjct: 176 KNAETFPVKITYDGQVYEDEAVLVXVGNGEYLGGIPSFIPNVKCDD 221


>pdb|1IGO|A Chain A, Family 11 Xylanase
 pdb|1IGO|B Chain B, Family 11 Xylanase
          Length = 205

 Score = 28.5 bits (62), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 18/45 (40%)

Query: 155 HYEEGSNADCNEPLCCRATSGPPLSPQTRAGRWGDYRKCDTPKRT 199
           +Y    N   N  LC    +  PL+       WG YR   TPK T
Sbjct: 69  NYNATFNPGGNSYLCVYGWTKDPLTEYYIVDNWGTYRPTGTPKGT 113


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,564,891
Number of Sequences: 62578
Number of extensions: 401279
Number of successful extensions: 831
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 828
Number of HSP's gapped (non-prelim): 5
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)