RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14383
(287 letters)
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative
splicing, disease mutation, gaucher disease,
glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens}
SCOP: a.64.1.1 PDB: 2z9a_A
Length = 91
Score = 41.9 bits (98), Expect = 1e-05
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 36 SVMSSMSCTACKAGVGLLQYYIKSGRTVADIEKMSYKFCVTFQTPR-----------GEV 84
+ +S + C C+ V + I + +T +I K C G
Sbjct: 1 AYVSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSS 60
Query: 85 VYVLKRVKLTPEEVCSFVIGDACDDVKNPTH 115
+ + +++PE VCS + C ++ H
Sbjct: 61 ILSILLEEVSPELVCSML--HLCSGTRHHHH 89
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein,
lipid-binding prote binding protein; 2.40A {Homo
sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Length = 83
Score = 38.8 bits (90), Expect = 2e-04
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 11/77 (14%)
Query: 37 VMSSMSCTACKAGVGLLQYYIKSGRTVADIEKMSYKFCVTFQTPR-----------GEVV 85
+ S + C C+ V + I + +T +I K C G +
Sbjct: 1 MDSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSI 60
Query: 86 YVLKRVKLTPEEVCSFV 102
+ +++PE VCS +
Sbjct: 61 LSILLEEVSPELVCSML 77
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase,
metalloprotein, metallophosphoesterase, protein
structure initiative; 1.70A {Danio rerio} SCOP:
d.159.1.12
Length = 322
Score = 41.5 bits (96), Expect = 2e-04
Identities = 19/134 (14%), Positives = 37/134 (27%), Gaps = 5/134 (3%)
Query: 142 FKVLHISDTHYDPHYEEGSNADCNEPLCCRATSGPPLSPQTRAGRWGDYRKCDTPKRTVD 201
F +L D EE + + + + R +
Sbjct: 144 FVLLDAYDLSVIGREEESEKHTHSWRILTQHNHNLQDLNLPPVSVGLEQRFVKFNGGFSE 203
Query: 202 HMLQHISTTHTSAEFSGEKVHVIGHIPP----GHSDCLRVWSRNYYSIINRYEATIAAQF 257
LQ + T ++ E+V + H+P CL S++ +++ +
Sbjct: 204 QQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAADPICLAWNHEAVLSVLRSHQS-VLCFI 262
Query: 258 FGHTHFDEFELFYD 271
GH H
Sbjct: 263 AGHDHDGGRCTDSS 276
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 2e-04
Identities = 45/398 (11%), Positives = 84/398 (21%), Gaps = 163/398 (40%)
Query: 14 PHFVDKALRLLNLRQVVEEIET--------------SVMSSMSCTA----CKAGVGLLQY 55
+ V + L LRQ + E+ + ++ C + CK + +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--F 185
Query: 56 YIKSGR--TVADIEKMSYKFCVTFQTPRGEVVYVLKRVKLTPEEV--------------- 98
++ + + +M K +KL +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 99 CSFVIGDACDDVKNPTHEWE-------------------VIFPPVPKPPTM---PLAL-P 135
C V+ +V+N W + ++ + L P
Sbjct: 246 CLLVL----LNVQNAKA-WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 136 SESAPTF-KVLHISDTHYD-PHYEEGSNADCNEPLCCRATSGPPL-------SPQTRAGR 186
E K L D P + P S +
Sbjct: 301 DEVKSLLLKYLDCRPQ--DLPR---------------EVLTTNPRRLSIIAESIRDGLAT 343
Query: 187 WGDYRK--CDTPKRTVDHMLQHISTTHTSAEFSG-----EKVHVIGHIPPG--------- 230
W +++ CD ++ L + F HIP
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA----HIPTILLSLIWFDV 399
Query: 231 ------------HSDCL--RVWSRNYYSI---------------------INRYEATIA- 254
H L + + SI ++ Y
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 255 --------------AQFFGHTHFDEFELFYDKEDMSRT 278
GH H E ++ + R
Sbjct: 460 DSDDLIPPYLDQYFYSHIGH-HLKNIEH-PERMTLFRM 495
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein,
galactosylcera lauryldimethylamine-N-oxide, lipid,
detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB:
2dob_A*
Length = 83
Score = 35.7 bits (82), Expect = 0.002
Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 13/76 (17%)
Query: 38 MSSMSCTACKAGVGLLQYYIKSGRTVADIEKMSYKFCVTFQTPRG-------------EV 84
M S+ C CK V +K T +I K C P +
Sbjct: 1 MGSLPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVI 60
Query: 85 VYVLKRVKLTPEEVCS 100
+ ++K P EVCS
Sbjct: 61 LDIIKGEMSRPGEVCS 76
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}
Length = 108
Score = 34.3 bits (78), Expect = 0.010
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 31 EEIETSVMSSMSCTACKAGVGLLQYYIKSGRTVADIEKMSYKFC 74
E +SV + CTAC+ V +Q +K T + + + C
Sbjct: 61 ETEGSSVGEAPLCTACEMAVVWMQNQLKQEGTKEKVLEYVNQLC 104
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein,
lipid binding protein, acid ceramidase,farber disease,
lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C
2rb3_A 2r1q_A 2r0r_A
Length = 80
Score = 33.0 bits (75), Expect = 0.017
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 11/71 (15%)
Query: 43 CTACKAGVGLLQYYIKSGRTVADIEKMSYKFCVTFQTPR-----------GEVVYVLKRV 91
C CK VG L ++ T +I K C P V+ +
Sbjct: 5 CEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVE 64
Query: 92 KLTPEEVCSFV 102
+ P VC +
Sbjct: 65 VMDPSFVCLKI 75
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria
monocytogenes}
Length = 443
Score = 35.6 bits (81), Expect = 0.018
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 127 PPTMPLALPSESAPTFKVLHISDTHYDP 154
T + P E ++ +D HY
Sbjct: 25 GKTEKITAPIEKDRNLSMVVTTDVHYFA 52
Score = 29.8 bits (66), Expect = 0.97
Identities = 10/77 (12%), Positives = 21/77 (27%), Gaps = 9/77 (11%)
Query: 213 SAEFSGEKVHVIGHIPP------GHSDCLRVWSRNYYSIINRYEATIAAQFFGHTHFDEF 266
A+ +G K+ + H +++ + + GH H
Sbjct: 230 LAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGA--MDFSLSGHIHTQNI 287
Query: 267 ELFYDKEDMSRTTNIAS 283
D T+I +
Sbjct: 288 RSAKS-TDGKEITDIVT 303
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.027
Identities = 45/275 (16%), Positives = 78/275 (28%), Gaps = 99/275 (36%)
Query: 12 HFPHFVDKALRLLN-LRQVVEEIETSVMSS--MSCTACKAGVGLLQ---YYI---KSGRT 62
F ++ +L L + + S +SC +G++Q Y + G T
Sbjct: 208 VFTQGLN----ILEWLENPSNTPDKDYLLSIPISCP----LIGVIQLAHYVVTAKLLGFT 259
Query: 63 VADIEKMSYKFCVTFQTPRGEVVYV-----------------LKRVKLTPEEVCSFVIGD 105
++ T + + K + + F IG
Sbjct: 260 PGELRS---YLKGA--TGHSQGLVTAVAIAETDSWESFFVSVRKAITV------LFFIGV 308
Query: 106 ACDDVKNPTHEWEVIFPPVPKPPTM---PLALPSESAPT--FKVLHISDTHYDPHYEEGS 160
C +E +P PP++ L +E P+ + +++ + +
Sbjct: 309 RC-------YE---AYPNTSLPPSILEDSLE-NNEGVPSPMLSISNLTQEQVQDYVNK-- 355
Query: 161 NADCNEPLCCRAT--------------SGPPLSPQTRAGRWGDYRKCDTPKRTVDHMLQH 206
N L SGPP S G RK P +D Q
Sbjct: 356 ---TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY---GLNLTLRKAKAP-SGLD---Q- 404
Query: 207 ISTTHTSAEFSGEKVHVIGH--IP---PGHSDCLR 236
+ FS K+ + +P P HS L
Sbjct: 405 -----SRIPFSERKL-KFSNRFLPVASPFHSHLLV 433
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex,
metallophosphatase, exonuclease, endonuclease, RAD50,
NBS1, hydrolase; 3.00A {Homo sapiens}
Length = 431
Score = 34.5 bits (78), Expect = 0.037
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 123 PVPKPPTMPLALPSESAPTFKVLHISDTH 151
VP+ M A + TFK+L +D H
Sbjct: 14 LVPRGSHMSTADALDDENTFKILVATDIH 42
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic
peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Length = 78
Score = 29.9 bits (67), Expect = 0.19
Identities = 8/71 (11%), Positives = 24/71 (33%), Gaps = 10/71 (14%)
Query: 42 SCTACKAGVGLLQYYIKSGRTVADIEKMSYKFCVTFQTPRGEVVYVLKRV---------- 91
C +C+ + L+ + + + + + C + RG +++
Sbjct: 3 FCESCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILT 62
Query: 92 KLTPEEVCSFV 102
P+ +C +
Sbjct: 63 GKKPQAICVDI 73
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold,
swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium
tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Length = 330
Score = 31.8 bits (72), Expect = 0.23
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 130 MPLALPSESAPTFKVLHISDTH 151
L P + +LHISDTH
Sbjct: 14 HRLRAAEHPRPDYVLLHISDTH 35
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold,
metallophosphodiesterase, active site mutan nucleotide
polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB:
3rl3_A* 3rl4_A*
Length = 296
Score = 31.1 bits (69), Expect = 0.39
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 9/60 (15%)
Query: 112 NPTHEWEVI--------FPPVPKPPTMPLALPSESAPTFKVLHISDTHYDPHYEEGSNAD 163
NPT + P V +P P + T + + ISDT + D
Sbjct: 23 NPTQAFTHYNINQSRFQPPHVHMVDPIPYDTPKPAGHT-RFVCISDTRSRTDGIQMPYGD 81
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32
chimeric protein; DNA double-strand break repair,
nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe}
PDB: 4fbq_A*
Length = 472
Score = 30.3 bits (67), Expect = 0.84
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 121 FPPVPKPPTMPLALPSESAPTFKVLHISDTH 151
F A + S T ++L SD H
Sbjct: 56 FQKKASQKVDGSAGSAGSENTIRILISSDPH 86
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein STR
initiative, PSI, joint center for structural genomics,
ELEC transport; HET: MSE; 1.80A {Thermotoga maritima}
SCOP: c.23.5.1 d.157.1.3
Length = 410
Score = 29.0 bits (65), Expect = 1.8
Identities = 10/86 (11%), Positives = 25/86 (29%), Gaps = 9/86 (10%)
Query: 194 DTPKRTV-DHMLQHISTTHTSAEFSGEKV--HVIGHIPPGHSDCLRVWSRNYYSIINRYE 250
D K + +S +++ ++ H P HS L + +
Sbjct: 67 DGWKGNYAKEFIDALSK-----IVDPKEITHIIVNHTEPDHSGSLPATLKTIGHDV-EII 120
Query: 251 ATIAAQFFGHTHFDEFELFYDKEDMS 276
A+ + + ++ K+
Sbjct: 121 ASNFGKRLLEGFYGIKDVTVVKDGEE 146
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 26.2 bits (57), Expect = 3.0
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 186 RWGDYRKCDTPKRTVDHMLQHISTTH 211
W D CD ++ HI+ H
Sbjct: 42 NWED---CDFLGDDTASIVNHINAQH 64
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease,
hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe}
PDB: 4fcx_B*
Length = 417
Score = 28.0 bits (61), Expect = 3.6
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 128 PTMPLALPSESAPTFKVLHISDTH 151
P M L +E+ T ++L SD H
Sbjct: 2 PDMNNELHNEN--TIRILISSDPH 23
>3hiq_A Vacuolar saporin; ribosome inactivating proteins, RIPS, hydrolase,
plant defense, protein synthesis inhibitor, toxin; 2.19A
{Saponaria officinalis}
Length = 345
Score = 27.9 bits (61), Expect = 3.7
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 108 DDVKNPTHEWEVIFPPVPKPPTMPLALPSESAPTFKVLHISDTHYDPHYEEGSNADCNEP 167
DD+K+P + PV K P P + + Y ++ + +
Sbjct: 59 DDIKDPNLHYGGTNLPVIKRPVGPPKFTVIIY-ELNLQGTTKAQYSTFLKQLRDDIKDPN 117
Query: 168 LCCRATSGPPLSPQTRAGRW 187
L T+ P + ++
Sbjct: 118 LHYGGTNLPVIKRPVGPPKF 137
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 27.3 bits (60), Expect = 5.8
Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 14/98 (14%)
Query: 99 CSFVIGDACDDVKNPTHEWEVIFPPVPKP-PTMPLALPSESAP---TFKVLHISDTH-YD 153
S A + P + + P P+ L P +F D
Sbjct: 166 ASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVD 225
Query: 154 PHYEEGSNADC--------NEPLCC-RATSGPPLSPQT 182
P+ E D + +C +++ G L
Sbjct: 226 PNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQ 263
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR
initiative, PSI-2, NEW YORK SGX research center for
structu genomics, nysgxrc; 1.90A {Candida albicans}
SCOP: d.114.1.1 d.159.1.2
Length = 557
Score = 27.3 bits (60), Expect = 7.6
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 131 PLALPSESAPTFKV--LHISDTH--YDPHYEEGSNA 162
+ P + + +H +DTH Y H +
Sbjct: 3 LASFPHRNLTWNDINFVHTTDTHGWYSGHINQPLYH 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.428
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,660,725
Number of extensions: 274529
Number of successful extensions: 669
Number of sequences better than 10.0: 1
Number of HSP's gapped: 666
Number of HSP's successfully gapped: 29
Length of query: 287
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 194
Effective length of database: 4,105,140
Effective search space: 796397160
Effective search space used: 796397160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.4 bits)