RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14383
         (287 letters)



>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 78

 Score = 40.4 bits (94), Expect = 1e-05
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 11/71 (15%)

Query: 43  CTACKAGVGLLQYYIKSGRTVADIEKMSYKFCVTFQTPR-----------GEVVYVLKRV 91
           C  C+  V  +   I + +T  +I     K C                  G  +  +   
Sbjct: 4   CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLE 63

Query: 92  KLTPEEVCSFV 102
           +++PE VCS +
Sbjct: 64  EVSPELVCSML 74


>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 78

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 9/77 (11%), Positives = 26/77 (33%), Gaps = 12/77 (15%)

Query: 43  CTACKAGVGLLQYYIKSGRTVADIEKMSYKFCVTFQTPRGEVVYVLKRV----------K 92
           C +C+  +  L+  +        + + + + C   +  RG    +++             
Sbjct: 4   CESCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILTG 63

Query: 93  LTPEEVCSFVIGDACDD 109
             P+ +C  +    C +
Sbjct: 64  KKPQAICVDI--KICKE 78


>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog
           zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}
          Length = 320

 Score = 34.7 bits (78), Expect = 0.009
 Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 202 HMLQHISTTHTSAEFSGEKVHVIGHIPP----GHSDCLRVWSRNYYSIINRYEATIAAQF 257
             LQ +    T ++   E+V +  H+P         CL        S++  +++ +    
Sbjct: 202 QQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAADPICLAWNHEAVLSVLRSHQS-VLCFI 260

Query: 258 FGHTHFDEFELFYD 271
            GH H         
Sbjct: 261 AGHDHDGGRCTDSS 274



 Score = 27.8 bits (60), Expect = 1.6
 Identities = 5/15 (33%), Positives = 6/15 (40%)

Query: 140 PTFKVLHISDTHYDP 154
           P F    I+D  Y  
Sbjct: 2   PVFTFGLIADVQYAD 16


>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 78

 Score = 30.7 bits (69), Expect = 0.030
 Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 17/79 (21%)

Query: 43  CTACKAGVGLLQYYIKSGRTVAD-IEKMSYKFCVTFQTPRG------------EVVYVLK 89
           C  C   V  +Q  +++  T    + +   + C                      + ++ 
Sbjct: 4   CQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMM 63

Query: 90  RVKLTPEEVCSFVIGDACD 108
              + P+E+C+ V    CD
Sbjct: 64  --HMQPKEICALV--GFCD 78


>d1qdma1 a.64.1.2 (A:1S-104S) (Pro)phytepsin {Barley (Hordeum
           vulgare) [TaxId: 4513]}
          Length = 104

 Score = 29.7 bits (66), Expect = 0.12
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 34  ETSVMSSMSCTACKAGVGLLQYYIKSGRTVADIEKMSYKFC 74
              + +   C+AC+  V  +Q  +   +T   I     + C
Sbjct: 60  SNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLC 100


>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId:
           5759]}
          Length = 77

 Score = 28.8 bits (64), Expect = 0.14
 Identities = 7/74 (9%), Positives = 20/74 (27%), Gaps = 12/74 (16%)

Query: 40  SMSCTACKAGVGLLQYYIKSGRTVADIEKMSYKFCVTFQTPR-----------GEVVYVL 88
            + C  C   +  L+  +   +    ++      C                   + +  L
Sbjct: 2   EILCNLCTGLINTLENLLT-TKGADKVKDYISSLCNKASGFIATLCTKVLDFGIDKLIQL 60

Query: 89  KRVKLTPEEVCSFV 102
              K+    +C+ +
Sbjct: 61  IEDKVDANAICAKI 74


>d2jn4a1 b.173.1.1 (A:1-66) Uncharacterized protein FixU (NifT)
           {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 66

 Score = 27.7 bits (62), Expect = 0.27
 Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 78  QTPRGEVVYVLKRVKLTPEEVCSFVIGDACDDVKNPTHEWEVIFPPVPKPPTMPLAL 134
           +T  G   YV K  K   E +                + W++  P +     +P+ +
Sbjct: 7   KTATGHSAYVAK--KDLEELIVEMENPALWGGKVTLANGWQLELPAMAADTPLPITV 61


>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide
           phosphodiesterase {Mycobacterium tuberculosis [TaxId:
           1773]}
          Length = 256

 Score = 28.2 bits (61), Expect = 0.92
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 140 PTFKVLHISDTHYDPHYEE 158
           P + +LHISDTH       
Sbjct: 3   PDYVLLHISDTHLIGGDRR 21


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.428 

Gapped
Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,160,237
Number of extensions: 55579
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 16
Length of query: 287
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,254,276
Effective search space: 254618028
Effective search space used: 254618028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.7 bits)