BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14385
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EVI|A Chain A, Crystal Structure Of The Thioredoxin-Fold Domain Of Human
Phosducin- Like Protein 2
pdb|3EVI|B Chain B, Crystal Structure Of The Thioredoxin-Fold Domain Of Human
Phosducin- Like Protein 2
Length = 118
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 65/91 (71%), Gaps = 4/91 (4%)
Query: 127 RFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKS 182
+FG + EI+G+ YV EV NA E +WV++H IP+C L+N HLS LA KFP TKF+K+
Sbjct: 1 KFGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKA 60
Query: 183 ISTTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
I +CI +Y D LPT+F+Y G+++++ +G
Sbjct: 61 IVNSCIQHYHDNCLPTIFVYKNGQIEAKFIG 91
>pdb|2DBC|A Chain A, Solution Structure Of The Thioredoxin-Like Domain Of
Phosducin-Like Protein 2(Pdcl2)
Length = 135
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 64/91 (70%), Gaps = 4/91 (4%)
Query: 127 RFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKS 182
+FG + EI+G+ YV EV NA + +WVV+H +P+C ++N HLS LA KFP TKF+K+
Sbjct: 8 KFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKA 67
Query: 183 ISTTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
I +CI +Y D LPT+F+Y G+++ + +G
Sbjct: 68 IVNSCIEHYHDNCLPTIFVYKNGQIEGKFIG 98
>pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 245
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 107 VLQEYRRKRIAEM-KAMAEKSRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLC 160
L++YRR+ + +M + ++ R+G V E+ +G+ +++ + + +V+H I C
Sbjct: 89 CLRKYRRQCMQDMHQKLSFGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGC 148
Query: 161 SLINNHLSELAAKFPTTKF--IKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMV 212
+N+ L LAA++P KF IK+ +T + LPTL +Y G++ S +
Sbjct: 149 DALNSSLICLAAEYPMVKFCKIKASNTGAGDRFSSDVLPTLLVYKGGELLSNFI 202
>pdb|1B9X|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
Length = 246
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 107 VLQEYRRKRIAEM-KAMAEKSRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLC 160
L++YRR+ + +M + ++ R+G V E+ G+ +++ + + +V++ + C
Sbjct: 89 CLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGC 148
Query: 161 SLINNHLSELAAKFPTTKF--IKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMV 212
+N+ L LAA++P KF I++ +T + LPTL +Y G++ S +
Sbjct: 149 DALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFI 202
>pdb|1B9Y|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 246
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 107 VLQEYRRKRIAEM-KAMAEKSRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLC 160
L++YRR+ + +M + ++ R+G V E+ G+ +++ + + +V++ + C
Sbjct: 89 CLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGC 148
Query: 161 SLINNHLSELAAKFPTTKF--IKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMV 212
+N+ L LAA++P KF I++ +T + LPTL +Y G++ S +
Sbjct: 149 DALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFI 202
>pdb|2TRC|P Chain P, PhosducinTRANSDUCIN BETA-Gamma Complex
Length = 217
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 107 VLQEYRRKRIAEM-KAMAEKSRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLC 160
L++YRR+ + + ++ R+G V E+ G+ +++ + + +V++ + C
Sbjct: 76 CLRKYRRQCXQDXHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGC 135
Query: 161 SLINNHLSELAAKFPTTKF--IKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMV 212
+N+ L LAA++P KF I++ +T + LPTL +Y G++ S +
Sbjct: 136 DALNSSLECLAAEYPXVKFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFI 189
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 156 FIPLCSLINNHLSELAAKFPTTKFIK---SISTTCIPNYPDKNLPTLFIYFEGKMQSQMV 212
+ P C +I +ELA KFP F+K + + +PT +GK+ + V
Sbjct: 37 WCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTV 96
Query: 213 GPDE 216
G D+
Sbjct: 97 GADK 100
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 10/61 (16%)
Query: 152 VVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDK----NLPTLFIYF 203
+V+HF P C+ +N ++ELA + P F+K + +P +K ++PT F++F
Sbjct: 41 LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVK-LEAEGVPEVSEKYEISSVPT-FLFF 98
Query: 204 E 204
+
Sbjct: 99 K 99
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 151 WVVLHFIPLCSLINNHLSELAAKFPTTKFIKSIS---TTCIPNYPDKNLPTLFIYFEGKM 207
W + C I + ++A +FPT KF K + + + LPT I GKM
Sbjct: 43 WFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIARSGKM 102
Query: 208 QSQMVG--PDEFRTNL 221
++G P R L
Sbjct: 103 LGHVIGANPGMLRQKL 118
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 10/61 (16%)
Query: 152 VVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDK----NLPTLFIYF 203
+V+HF P C+ +N ++ELA + P F+K + +P +K ++PT F++F
Sbjct: 35 LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVK-LEAEGVPEVSEKYEISSVPT-FLFF 92
Query: 204 E 204
+
Sbjct: 93 K 93
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 131 VLEINGDTYVQEVNNAGEGIWVVLHFIPL----CSLINNHLSELAAKFPTTKFIK---SI 183
V +I T QE +A VV+ F C +I L+ K+ F++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 184 STTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
+ P Y + +PTL ++ G++ + VG
Sbjct: 62 AQDVAPKYGIRGIPTLLLFKNGEVAATKVG 91
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 129 GRVLEINGDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAA 172
G V+E+ D++ + V ++ E +W+V + P C N E AA
Sbjct: 7 GDVIELTDDSFDKNVLDS-EDVWMVEFYAPWCGHCKNLEPEWAA 49
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 130 RVLEINGDTYVQEVNNAGEGIWVVL--HFIPLCSLINNHLSELA----AKFPTTKFIKSI 183
+++ + D++ +V A I V + C LI + L E+A K K
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQ 62
Query: 184 STTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
+ P Y + +PTL ++ G++ + VG
Sbjct: 63 NPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,799,131
Number of Sequences: 62578
Number of extensions: 204351
Number of successful extensions: 470
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 15
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)