Query psy14385
Match_columns 228
No_of_seqs 248 out of 1706
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 18:31:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3170|consensus 100.0 8.5E-60 1.8E-64 401.4 15.7 186 38-227 1-194 (240)
2 cd02988 Phd_like_VIAF Phosduci 100.0 3.5E-54 7.5E-59 367.9 18.0 178 45-226 1-184 (192)
3 PF02114 Phosducin: Phosducin; 100.0 2.8E-34 6.1E-39 256.3 14.2 142 85-226 79-230 (265)
4 cd02987 Phd_like_Phd Phosducin 100.0 1.1E-32 2.5E-37 231.9 13.2 137 90-227 23-168 (175)
5 KOG1672|consensus 99.9 9.6E-26 2.1E-30 191.9 12.6 119 104-225 35-169 (211)
6 KOG3171|consensus 99.9 5.9E-23 1.3E-27 177.5 10.2 139 82-220 89-237 (273)
7 cd02957 Phd_like Phosducin (Ph 99.8 9.2E-20 2E-24 141.8 9.8 100 126-225 1-107 (113)
8 cd02989 Phd_like_TxnDC9 Phosdu 99.8 4.8E-19 1E-23 138.8 10.4 98 126-226 1-108 (113)
9 cd02954 DIM1 Dim1 family; Dim1 99.6 3.8E-15 8.2E-20 118.1 10.1 80 135-215 1-88 (114)
10 KOG0907|consensus 99.6 5.6E-15 1.2E-19 115.5 10.0 83 133-216 6-95 (106)
11 KOG0910|consensus 99.6 6.9E-15 1.5E-19 121.3 8.6 85 131-217 45-137 (150)
12 cd02985 TRX_CDSP32 TRX family, 99.5 3.6E-14 7.7E-19 108.7 9.4 81 135-216 2-92 (103)
13 KOG0908|consensus 99.5 2.1E-14 4.5E-19 127.1 8.5 88 130-218 2-97 (288)
14 cd03065 PDI_b_Calsequestrin_N 99.5 7.5E-14 1.6E-18 111.4 8.9 86 128-216 8-107 (120)
15 PHA02278 thioredoxin-like prot 99.5 8.1E-14 1.8E-18 108.1 8.6 78 135-215 3-92 (103)
16 cd02965 HyaE HyaE family; HyaE 99.5 9.6E-14 2.1E-18 109.6 8.8 83 131-216 12-104 (111)
17 PTZ00051 thioredoxin; Provisio 99.5 4.3E-13 9.2E-18 100.2 9.9 84 131-216 2-92 (98)
18 cd02984 TRX_PICOT TRX domain, 99.4 8E-13 1.7E-17 98.4 10.0 81 135-216 1-89 (97)
19 PF00085 Thioredoxin: Thioredo 99.4 1.7E-12 3.6E-17 96.5 10.4 83 131-215 1-91 (103)
20 cd02986 DLP Dim1 family, Dim1- 99.4 8.8E-13 1.9E-17 104.6 9.2 74 136-210 2-83 (114)
21 PTZ00062 glutaredoxin; Provisi 99.4 1.1E-12 2.3E-17 113.6 10.1 76 134-216 4-83 (204)
22 PLN00410 U5 snRNP protein, DIM 99.4 1.3E-12 2.8E-17 107.3 9.2 82 132-214 6-98 (142)
23 PRK09381 trxA thioredoxin; Pro 99.4 4E-12 8.6E-17 97.2 10.4 85 130-216 4-96 (109)
24 cd03006 PDI_a_EFP1_N PDIa fami 99.4 2.9E-12 6.3E-17 101.0 9.7 88 129-216 9-105 (113)
25 cd02962 TMX2 TMX2 family; comp 99.4 5.9E-12 1.3E-16 104.3 10.5 87 128-215 27-128 (152)
26 cd03004 PDI_a_ERdj5_C PDIa fam 99.4 3.9E-12 8.5E-17 96.3 8.5 84 130-215 2-94 (104)
27 cd02948 TRX_NDPK TRX domain, T 99.4 5.1E-12 1.1E-16 96.5 9.2 80 133-215 3-91 (102)
28 COG3118 Thioredoxin domain-con 99.3 1.8E-12 3.8E-17 117.3 7.5 88 130-217 24-119 (304)
29 cd02963 TRX_DnaJ TRX domain, D 99.3 6.1E-12 1.3E-16 97.7 8.6 85 132-216 7-100 (111)
30 cd03003 PDI_a_ERdj5_N PDIa fam 99.3 6E-12 1.3E-16 95.1 7.9 83 130-215 2-92 (101)
31 cd02956 ybbN ybbN protein fami 99.3 1.3E-11 2.8E-16 92.0 9.3 77 138-215 2-86 (96)
32 cd03005 PDI_a_ERp46 PDIa famil 99.3 2.5E-11 5.3E-16 90.8 8.5 82 131-216 2-94 (102)
33 cd02999 PDI_a_ERp44_like PDIa 99.2 2.6E-11 5.6E-16 92.8 7.9 77 138-216 8-92 (100)
34 TIGR01295 PedC_BrcD bacterioci 99.2 8E-11 1.7E-15 93.7 10.2 80 131-214 8-109 (122)
35 cd02996 PDI_a_ERp44 PDIa famil 99.2 5.9E-11 1.3E-15 90.8 8.9 83 130-215 2-99 (108)
36 PRK10996 thioredoxin 2; Provis 99.2 8.6E-11 1.9E-15 95.0 10.3 85 129-216 35-127 (139)
37 TIGR01068 thioredoxin thioredo 99.2 8.9E-11 1.9E-15 86.7 8.8 80 134-215 1-88 (101)
38 cd02975 PfPDO_like_N Pyrococcu 99.1 2.4E-10 5.2E-15 89.4 8.4 75 137-214 13-96 (113)
39 cd02995 PDI_a_PDI_a'_C PDIa fa 99.1 3.1E-10 6.7E-15 84.7 8.1 82 131-214 2-94 (104)
40 cd02997 PDI_a_PDIR PDIa family 99.1 5.8E-10 1.3E-14 83.4 9.2 83 130-215 1-95 (104)
41 cd03002 PDI_a_MPD1_like PDI fa 99.1 2.6E-10 5.7E-15 86.4 7.3 74 131-206 2-85 (109)
42 cd02994 PDI_a_TMX PDIa family, 99.1 4.4E-10 9.6E-15 84.5 8.2 80 130-215 2-90 (101)
43 cd02949 TRX_NTR TRX domain, no 99.1 7.7E-10 1.7E-14 83.3 8.9 74 141-216 7-88 (97)
44 cd03001 PDI_a_P5 PDIa family, 99.0 1.2E-09 2.5E-14 81.8 8.7 81 131-213 2-91 (103)
45 cd02993 PDI_a_APS_reductase PD 99.0 1E-09 2.2E-14 84.6 8.0 84 130-213 2-97 (109)
46 cd02947 TRX_family TRX family; 99.0 2.4E-09 5.1E-14 76.4 9.2 76 138-216 2-84 (93)
47 cd02952 TRP14_like Human TRX-r 99.0 1.2E-09 2.6E-14 87.2 8.3 71 135-206 8-101 (119)
48 cd02992 PDI_a_QSOX PDIa family 99.0 1.4E-09 3.1E-14 85.0 7.5 87 129-218 1-100 (114)
49 cd02961 PDI_a_family Protein D 99.0 1.3E-09 2.9E-14 79.4 6.9 80 133-215 2-92 (101)
50 cd02950 TxlA TRX-like protein 99.0 1.5E-09 3.3E-14 88.2 7.5 77 137-216 11-98 (142)
51 cd02998 PDI_a_ERp38 PDIa famil 99.0 2.6E-09 5.6E-14 79.7 7.4 81 131-213 2-94 (105)
52 PRK11509 hydrogenase-1 operon 98.9 6.7E-09 1.5E-13 84.4 8.8 67 151-217 36-113 (132)
53 PTZ00443 Thioredoxin domain-co 98.9 9.2E-09 2E-13 90.2 9.6 87 129-215 30-126 (224)
54 TIGR01126 pdi_dom protein disu 98.9 5.3E-09 1.2E-13 77.5 6.8 79 134-215 1-89 (102)
55 cd02953 DsbDgamma DsbD gamma f 98.9 4.2E-09 9.2E-14 79.8 6.0 77 137-216 2-95 (104)
56 cd03000 PDI_a_TMX3 PDIa family 98.8 8.3E-09 1.8E-13 78.5 6.9 65 150-215 16-91 (104)
57 TIGR00424 APS_reduc 5'-adenyly 98.8 9.9E-09 2.1E-13 98.5 8.8 78 129-206 351-439 (463)
58 TIGR02187 GlrX_arch Glutaredox 98.8 1.7E-08 3.6E-13 87.0 7.6 76 137-215 11-98 (215)
59 PLN02309 5'-adenylylsulfate re 98.7 3.7E-08 7.9E-13 94.5 8.8 80 128-207 344-434 (457)
60 TIGR01130 ER_PDI_fam protein d 98.7 4.6E-08 1E-12 90.8 7.6 107 106-214 321-440 (462)
61 PTZ00102 disulphide isomerase; 98.7 1E-07 2.2E-12 89.7 9.5 86 128-215 356-452 (477)
62 cd02959 ERp19 Endoplasmic reti 98.5 1.7E-07 3.7E-12 73.9 6.3 69 149-217 19-99 (117)
63 cd02982 PDI_b'_family Protein 98.5 1.1E-07 2.4E-12 71.3 4.7 61 150-210 13-85 (103)
64 TIGR01130 ER_PDI_fam protein d 98.5 2.9E-07 6.4E-12 85.5 8.4 83 130-215 2-96 (462)
65 TIGR02187 GlrX_arch Glutaredox 98.5 7.4E-07 1.6E-11 76.7 9.2 56 157-215 145-203 (215)
66 PTZ00102 disulphide isomerase; 98.5 5.4E-07 1.2E-11 84.9 9.0 83 129-215 32-125 (477)
67 cd02951 SoxW SoxW family; SoxW 98.5 4.2E-07 9.1E-12 71.1 6.3 67 150-216 15-107 (125)
68 cd02973 TRX_GRX_like Thioredox 98.4 9.5E-07 2.1E-11 61.8 6.8 55 152-208 3-63 (67)
69 PHA02125 thioredoxin-like prot 98.4 8.5E-07 1.8E-11 64.2 6.4 51 157-215 10-63 (75)
70 TIGR00412 redox_disulf_2 small 98.4 7.2E-07 1.6E-11 65.0 5.8 54 157-214 10-64 (76)
71 cd03026 AhpF_NTD_C TRX-GRX-lik 98.4 1E-06 2.2E-11 66.5 6.7 52 157-210 24-78 (89)
72 TIGR00411 redox_disulf_1 small 98.4 1.6E-06 3.4E-11 62.3 7.1 60 152-215 3-69 (82)
73 cd03010 TlpA_like_DsbE TlpA-li 98.3 2.2E-06 4.8E-11 66.9 7.7 67 149-216 25-122 (127)
74 KOG0190|consensus 98.2 2.1E-06 4.6E-11 82.9 6.6 85 129-216 25-120 (493)
75 cd03007 PDI_a_ERp29_N PDIa fam 98.2 2.5E-06 5.4E-11 67.9 5.3 73 130-206 2-91 (116)
76 PRK00293 dipZ thiol:disulfide 98.2 3.4E-06 7.4E-11 82.9 7.1 85 131-215 454-557 (571)
77 cd02966 TlpA_like_family TlpA- 98.2 9.8E-06 2.1E-10 59.6 7.8 64 150-213 20-116 (116)
78 TIGR02740 TraF-like TraF-like 98.1 9.2E-06 2E-10 73.0 8.0 66 149-215 166-251 (271)
79 KOG0190|consensus 98.1 1.2E-05 2.5E-10 77.9 7.8 79 128-208 365-451 (493)
80 cd03009 TryX_like_TryX_NRX Try 98.0 1.4E-05 3E-10 62.7 5.7 62 149-210 18-115 (131)
81 cd02955 SSP411 TRX domain, SSP 97.9 7.3E-05 1.6E-09 59.9 8.9 66 149-214 15-100 (124)
82 KOG0914|consensus 97.9 1.4E-05 3E-10 70.3 4.9 92 127-218 122-228 (265)
83 PRK15412 thiol:disulfide inter 97.9 5.4E-05 1.2E-09 63.7 7.7 66 149-216 68-164 (185)
84 PRK14018 trifunctional thiored 97.9 3E-05 6.4E-10 75.8 7.0 70 148-217 55-162 (521)
85 TIGR00385 dsbE periplasmic pro 97.8 9.5E-05 2.1E-09 61.4 7.6 65 149-215 63-158 (173)
86 cd02964 TryX_like_family Trypa 97.8 6.6E-05 1.4E-09 59.4 6.3 63 149-211 17-116 (132)
87 PF13098 Thioredoxin_2: Thiore 97.8 2.9E-05 6.3E-10 59.0 3.9 68 149-216 5-104 (112)
88 cd03012 TlpA_like_DipZ_like Tl 97.7 9.3E-05 2E-09 57.9 6.7 66 149-214 23-125 (126)
89 TIGR02738 TrbB type-F conjugat 97.7 0.00019 4.1E-09 59.5 8.0 66 150-216 51-141 (153)
90 PLN02919 haloacid dehalogenase 97.7 0.00015 3.3E-09 76.1 8.7 68 148-215 419-523 (1057)
91 PRK03147 thiol-disulfide oxido 97.6 0.00024 5.3E-09 57.8 7.9 68 149-216 61-160 (173)
92 cd03011 TlpA_like_ScsD_MtbDsbE 97.5 0.00029 6.2E-09 54.2 6.6 67 150-217 21-115 (123)
93 COG0526 TrxA Thiol-disulfide i 97.5 0.0001 2.2E-09 53.0 3.5 64 150-213 33-107 (127)
94 cd03008 TryX_like_RdCVF Trypar 97.5 0.00028 6.1E-09 58.2 6.5 63 148-210 24-128 (146)
95 cd01659 TRX_superfamily Thiore 97.5 0.00048 1E-08 44.0 6.2 49 157-205 9-63 (69)
96 PF13905 Thioredoxin_8: Thiore 97.5 0.00028 6.2E-09 52.0 5.6 56 149-204 1-91 (95)
97 cd02967 mauD Methylamine utili 97.4 0.00057 1.2E-08 51.8 7.2 62 149-210 21-111 (114)
98 KOG0911|consensus 97.4 5.8E-05 1.3E-09 66.3 1.4 83 130-217 2-92 (227)
99 cd02958 UAS UAS family; UAS is 97.2 0.0022 4.8E-08 49.5 7.8 68 149-216 17-99 (114)
100 PF08534 Redoxin: Redoxin; In 97.1 0.0017 3.6E-08 51.6 6.5 68 149-216 28-136 (146)
101 KOG0912|consensus 97.0 0.00072 1.6E-08 62.3 4.5 71 137-210 4-87 (375)
102 KOG0191|consensus 97.0 0.0012 2.7E-08 61.4 5.4 87 126-213 26-119 (383)
103 PF07449 HyaE: Hydrogenase-1 e 96.9 0.0027 5.9E-08 50.0 6.4 84 131-217 11-104 (107)
104 PF14595 Thioredoxin_9: Thiore 96.9 0.005 1.1E-07 49.6 7.6 76 139-214 32-117 (129)
105 TIGR02196 GlrX_YruB Glutaredox 96.9 0.0031 6.8E-08 43.3 5.5 49 157-215 10-65 (74)
106 PRK13728 conjugal transfer pro 96.8 0.004 8.6E-08 53.3 7.2 65 152-217 73-160 (181)
107 cd02969 PRX_like1 Peroxiredoxi 96.8 0.0042 9.1E-08 51.0 7.1 62 149-210 25-125 (171)
108 PF06110 DUF953: Eukaryotic pr 96.8 0.0063 1.4E-07 48.7 7.3 75 136-213 5-104 (119)
109 KOG0191|consensus 96.8 0.0029 6.3E-08 59.0 6.2 84 130-214 145-238 (383)
110 PF13192 Thioredoxin_3: Thiore 96.6 0.0084 1.8E-07 43.4 6.6 52 157-213 10-63 (76)
111 cd02960 AGR Anterior Gradient 96.6 0.0069 1.5E-07 49.2 6.4 65 149-216 23-101 (130)
112 cd03017 PRX_BCP Peroxiredoxin 96.4 0.013 2.8E-07 45.8 7.0 67 150-216 24-131 (140)
113 TIGR02661 MauD methylamine deh 96.4 0.0086 1.9E-07 50.6 6.2 61 149-210 74-162 (189)
114 cd03014 PRX_Atyp2cys Peroxired 96.4 0.034 7.4E-07 43.9 9.2 69 149-217 26-132 (143)
115 TIGR02200 GlrX_actino Glutared 96.4 0.0094 2E-07 41.8 5.3 53 152-210 2-65 (77)
116 PF13728 TraF: F plasmid trans 96.4 0.011 2.3E-07 51.6 6.8 58 150-207 121-195 (215)
117 COG4232 Thiol:disulfide interc 96.3 0.0081 1.8E-07 59.3 6.2 90 126-216 450-556 (569)
118 PRK11200 grxA glutaredoxin 1; 96.3 0.014 3E-07 42.8 5.9 51 157-209 11-70 (85)
119 PRK09437 bcp thioredoxin-depen 96.1 0.023 5E-07 45.7 7.1 68 149-216 30-141 (154)
120 KOG4277|consensus 95.9 0.0064 1.4E-07 56.3 3.1 61 149-209 44-114 (468)
121 smart00594 UAS UAS domain. 95.9 0.076 1.7E-06 41.7 8.9 76 137-214 14-111 (122)
122 TIGR02739 TraF type-F conjugat 95.8 0.047 1E-06 49.1 8.4 63 151-213 152-231 (256)
123 PF13848 Thioredoxin_6: Thiore 95.7 0.096 2.1E-06 42.5 9.1 78 123-203 71-159 (184)
124 PRK15317 alkyl hydroperoxide r 95.7 0.058 1.3E-06 52.2 8.9 50 157-208 128-180 (517)
125 TIGR02180 GRX_euk Glutaredoxin 95.6 0.02 4.3E-07 40.8 4.2 55 152-209 1-66 (84)
126 PTZ00056 glutathione peroxidas 95.4 0.073 1.6E-06 45.6 7.7 36 149-184 39-80 (199)
127 PRK13703 conjugal pilus assemb 95.3 0.088 1.9E-06 47.2 8.1 58 151-208 145-219 (248)
128 TIGR03140 AhpF alkyl hydropero 95.3 0.09 2E-06 50.9 8.8 50 157-208 129-181 (515)
129 PF11009 DUF2847: Protein of u 95.3 0.057 1.2E-06 42.4 5.9 79 133-212 3-95 (105)
130 PF13899 Thioredoxin_7: Thiore 95.2 0.014 2.9E-07 42.5 2.2 55 149-203 17-81 (82)
131 KOG3425|consensus 95.1 0.12 2.6E-06 41.8 7.5 67 137-204 13-104 (128)
132 TIGR03143 AhpF_homolog putativ 95.1 0.11 2.4E-06 50.8 8.9 50 157-208 488-540 (555)
133 PRK00522 tpx lipid hydroperoxi 94.9 0.14 3E-06 42.3 7.8 67 149-215 44-151 (167)
134 PLN02399 phospholipid hydroper 94.8 0.14 3.1E-06 45.3 8.1 36 149-184 99-140 (236)
135 cd00340 GSH_Peroxidase Glutath 94.8 0.15 3.3E-06 41.1 7.6 35 149-184 22-62 (152)
136 cd02983 P5_C P5 family, C-term 94.7 0.18 4E-06 40.4 7.7 76 130-207 3-93 (130)
137 cd02970 PRX_like2 Peroxiredoxi 94.7 0.12 2.7E-06 40.4 6.6 36 151-186 26-67 (149)
138 KOG2603|consensus 94.6 0.14 3.1E-06 47.3 7.6 73 130-202 41-133 (331)
139 cd03015 PRX_Typ2cys Peroxiredo 94.6 0.17 3.7E-06 41.7 7.4 70 149-218 29-143 (173)
140 PLN02412 probable glutathione 94.5 0.21 4.5E-06 41.3 7.9 36 149-184 29-70 (167)
141 cd02981 PDI_b_family Protein D 94.5 0.12 2.7E-06 37.9 5.9 72 132-205 2-74 (97)
142 cd02971 PRX_family Peroxiredox 94.5 0.17 3.8E-06 39.3 6.9 68 149-216 22-131 (140)
143 TIGR02183 GRXA Glutaredoxin, G 94.4 0.069 1.5E-06 39.5 4.3 50 157-208 10-68 (86)
144 PF01216 Calsequestrin: Calseq 94.2 0.17 3.7E-06 47.6 7.3 81 128-211 33-128 (383)
145 cd03018 PRX_AhpE_like Peroxire 94.0 0.24 5.1E-06 39.1 6.9 68 150-217 29-136 (149)
146 KOG3414|consensus 93.8 0.41 9E-06 39.1 8.0 74 135-209 10-91 (142)
147 cd02066 GRX_family Glutaredoxi 93.6 0.089 1.9E-06 35.6 3.3 53 152-211 2-64 (72)
148 PRK15000 peroxidase; Provision 93.4 0.32 7E-06 41.7 7.2 71 149-219 34-149 (200)
149 PTZ00256 glutathione peroxidas 93.3 0.31 6.6E-06 40.9 6.8 28 157-184 53-82 (183)
150 KOG2501|consensus 93.0 0.38 8.2E-06 40.4 6.8 62 149-210 33-131 (157)
151 TIGR03137 AhpC peroxiredoxin. 93.0 0.38 8.3E-06 40.5 7.0 69 149-217 31-141 (187)
152 cd03419 GRX_GRXh_1_2_like Glut 93.0 0.21 4.5E-06 35.5 4.6 53 152-209 2-65 (82)
153 PHA03050 glutaredoxin; Provisi 93.0 0.16 3.5E-06 39.6 4.3 69 137-210 3-82 (108)
154 COG2143 Thioredoxin-related pr 93.0 0.23 5.1E-06 42.0 5.4 68 149-216 42-137 (182)
155 cd02976 NrdH NrdH-redoxin (Nrd 92.8 0.37 7.9E-06 32.7 5.5 49 157-215 10-65 (73)
156 PF02966 DIM1: Mitosis protein 92.4 1.7 3.7E-05 35.6 9.6 72 135-208 7-87 (133)
157 TIGR01626 ytfJ_HI0045 conserve 92.2 0.25 5.3E-06 42.4 4.8 67 149-215 59-167 (184)
158 PF00578 AhpC-TSA: AhpC/TSA fa 92.1 0.26 5.7E-06 37.3 4.4 38 149-186 25-69 (124)
159 PRK10382 alkyl hydroperoxide r 92.1 1.3 2.8E-05 37.7 9.0 82 129-218 19-142 (187)
160 cd02968 SCO SCO (an acronym fo 91.8 0.35 7.5E-06 37.7 4.8 37 149-185 22-68 (142)
161 PF00462 Glutaredoxin: Glutare 90.9 0.37 8.1E-06 32.6 3.8 45 157-208 9-60 (60)
162 TIGR02540 gpx7 putative glutat 89.9 0.63 1.4E-05 37.5 4.9 69 149-217 22-142 (153)
163 PRK10329 glutaredoxin-like pro 89.5 1.5 3.2E-05 32.2 6.2 50 157-216 11-66 (81)
164 cd03023 DsbA_Com1_like DsbA fa 89.5 0.89 1.9E-05 35.4 5.4 32 151-182 7-42 (154)
165 TIGR02190 GlrX-dom Glutaredoxi 89.3 0.89 1.9E-05 32.8 4.8 52 151-209 9-69 (79)
166 PRK13189 peroxiredoxin; Provis 88.3 2.4 5.1E-05 37.0 7.7 71 149-219 35-150 (222)
167 cd03027 GRX_DEP Glutaredoxin ( 87.1 1.9 4.2E-05 30.2 5.4 46 157-209 11-63 (73)
168 TIGR02194 GlrX_NrdH Glutaredox 87.1 1.5 3.2E-05 30.9 4.7 51 157-216 9-65 (72)
169 TIGR02189 GlrX-like_plant Glut 86.6 1 2.2E-05 34.3 3.9 52 151-209 9-73 (99)
170 KOG1731|consensus 86.6 0.5 1.1E-05 47.0 2.6 77 130-208 40-129 (606)
171 PRK13190 putative peroxiredoxi 86.5 2.7 5.9E-05 35.8 6.9 70 149-218 27-140 (202)
172 TIGR03143 AhpF_homolog putativ 86.1 3.2 7E-05 40.7 8.0 57 157-213 378-439 (555)
173 TIGR00365 monothiol glutaredox 84.8 3.3 7.2E-05 31.3 5.9 63 138-210 3-80 (97)
174 PTZ00137 2-Cys peroxiredoxin; 84.4 8 0.00017 34.9 9.1 70 149-218 98-211 (261)
175 cd03028 GRX_PICOT_like Glutare 84.3 2.1 4.5E-05 31.8 4.5 52 151-209 9-75 (90)
176 PF13848 Thioredoxin_6: Thiore 84.3 0.94 2E-05 36.6 2.9 51 162-213 7-59 (184)
177 cd03072 PDI_b'_ERp44 PDIb' fam 84.0 3.3 7.2E-05 32.1 5.7 73 131-205 1-83 (111)
178 cd03418 GRX_GRXb_1_3_like Glut 82.8 3 6.5E-05 28.9 4.7 46 157-209 10-63 (75)
179 cd03029 GRX_hybridPRX5 Glutare 82.6 4.5 9.8E-05 28.2 5.5 46 157-209 11-62 (72)
180 cd03016 PRX_1cys Peroxiredoxin 82.5 5.3 0.00012 34.0 6.9 69 150-218 26-140 (203)
181 PF10587 EF-1_beta_acid: Eukar 81.0 1.6 3.6E-05 26.4 2.2 22 100-121 5-26 (28)
182 cd03066 PDI_b_Calsequestrin_mi 80.8 5.5 0.00012 30.0 5.8 73 131-205 2-76 (102)
183 TIGR02181 GRX_bact Glutaredoxi 80.7 2.5 5.5E-05 29.9 3.7 46 157-209 9-61 (79)
184 PF13462 Thioredoxin_4: Thiore 79.1 4.3 9.4E-05 32.0 4.9 34 151-184 14-54 (162)
185 cd02991 UAS_ETEA UAS family, E 79.1 12 0.00025 29.4 7.3 66 149-216 17-101 (116)
186 PTZ00253 tryparedoxin peroxida 79.1 4 8.6E-05 34.6 5.0 70 149-218 36-150 (199)
187 PRK10954 periplasmic protein d 78.1 2.7 5.9E-05 35.8 3.7 33 152-184 41-80 (207)
188 cd02974 AhpF_NTD_N Alkyl hydro 77.7 11 0.00024 28.6 6.6 42 157-206 30-71 (94)
189 cd03069 PDI_b_ERp57 PDIb famil 76.6 7.2 0.00016 29.5 5.3 69 131-203 2-72 (104)
190 cd03073 PDI_b'_ERp72_ERp57 PDI 76.6 6.3 0.00014 30.7 5.1 69 133-205 3-87 (111)
191 cd03019 DsbA_DsbA DsbA family, 75.9 5.2 0.00011 32.1 4.6 30 151-180 18-51 (178)
192 PRK10638 glutaredoxin 3; Provi 74.8 7.7 0.00017 27.9 4.8 48 157-211 12-66 (83)
193 cd03068 PDI_b_ERp72 PDIb famil 74.7 12 0.00027 28.7 6.3 73 131-205 2-76 (107)
194 PF11069 DUF2870: Protein of u 73.7 6 0.00013 30.8 4.2 60 41-113 23-84 (98)
195 KOG1752|consensus 73.6 14 0.00029 28.9 6.2 55 151-210 15-80 (104)
196 COG2118 DNA-binding protein [G 73.4 3.7 7.9E-05 32.8 2.9 20 104-123 2-21 (116)
197 PRK13191 putative peroxiredoxi 73.0 7.6 0.00017 33.6 5.2 71 149-219 33-148 (215)
198 PRK13599 putative peroxiredoxi 72.6 8.2 0.00018 33.5 5.3 70 149-218 28-142 (215)
199 PRK12759 bifunctional gluaredo 71.6 6.3 0.00014 37.5 4.7 51 152-209 4-72 (410)
200 KOG0913|consensus 70.7 1.9 4.1E-05 38.6 0.9 81 130-215 25-113 (248)
201 PTZ00062 glutaredoxin; Provisi 67.9 15 0.00033 31.8 5.9 64 137-210 103-181 (204)
202 PRK10824 glutaredoxin-4; Provi 66.9 13 0.00028 29.5 4.8 67 137-211 5-84 (115)
203 PF14097 SpoVAE: Stage V sporu 65.7 87 0.0019 26.9 9.8 55 126-182 30-88 (180)
204 PF01323 DSBA: DSBA-like thior 60.3 10 0.00022 30.8 3.3 33 152-184 2-37 (193)
205 KOG4277|consensus 60.3 25 0.00055 33.1 6.1 95 111-207 115-212 (468)
206 PF13362 Toprim_3: Toprim doma 59.5 6.8 0.00015 29.0 1.9 17 40-56 79-95 (96)
207 PF05768 DUF836: Glutaredoxin- 58.6 15 0.00032 26.6 3.6 43 157-201 10-55 (81)
208 PRK10606 btuE putative glutath 57.4 21 0.00046 30.3 4.8 35 149-184 25-65 (183)
209 PF07912 ERp29_N: ERp29, N-ter 57.0 54 0.0012 26.7 6.8 72 131-205 6-93 (126)
210 cd02972 DsbA_family DsbA famil 56.9 18 0.00038 25.2 3.7 27 157-183 9-36 (98)
211 COG3634 AhpF Alkyl hydroperoxi 53.9 16 0.00034 35.3 3.7 51 157-209 128-181 (520)
212 TIGR03140 AhpF alkyl hydropero 53.0 46 0.001 32.3 7.0 44 157-207 30-73 (515)
213 KOG4752|consensus 52.1 18 0.00039 21.1 2.4 16 109-124 3-18 (26)
214 PF00837 T4_deiodinase: Iodoth 51.7 23 0.0005 31.7 4.2 58 130-187 83-145 (237)
215 PRK15317 alkyl hydroperoxide r 51.6 72 0.0016 30.9 8.1 43 157-207 30-72 (517)
216 COG0278 Glutaredoxin-related p 48.9 60 0.0013 25.6 5.6 58 150-210 15-84 (105)
217 COG0695 GrxC Glutaredoxin and 48.1 8 0.00017 28.2 0.7 45 157-208 11-64 (80)
218 PRK10877 protein disulfide iso 47.9 24 0.00051 30.9 3.7 19 189-208 196-214 (232)
219 COG4604 CeuD ABC-type enteroch 46.0 36 0.00078 30.4 4.5 50 157-210 168-217 (252)
220 KOG3431|consensus 46.0 16 0.00035 29.6 2.1 19 105-123 2-20 (129)
221 cd03031 GRX_GRX_like Glutaredo 43.3 38 0.00083 27.9 4.1 46 157-209 16-72 (147)
222 PRK04239 hypothetical protein; 43.2 19 0.00041 28.6 2.2 17 108-124 3-19 (110)
223 PF04909 Amidohydro_2: Amidohy 42.5 35 0.00076 28.8 3.9 45 138-184 121-172 (273)
224 PF10262 Rdx: Rdx family; Int 40.5 69 0.0015 22.9 4.6 49 152-210 3-56 (76)
225 PHA03075 glutaredoxin-like pro 40.3 27 0.00058 28.2 2.6 25 151-175 3-31 (123)
226 KOG2792|consensus 37.1 64 0.0014 29.5 4.8 62 125-186 115-188 (280)
227 PF01323 DSBA: DSBA-like thior 36.7 32 0.0007 27.8 2.7 26 188-217 160-185 (193)
228 COG1651 DsbG Protein-disulfide 35.4 86 0.0019 26.8 5.3 27 157-183 96-122 (244)
229 TIGR02159 PA_CoA_Oxy4 phenylac 34.6 50 0.0011 27.2 3.5 30 33-62 60-94 (146)
230 PF02630 SCO1-SenC: SCO1/SenC; 33.6 96 0.0021 25.6 5.1 37 149-185 52-97 (174)
231 cd03020 DsbA_DsbC_DsbG DsbA fa 33.0 21 0.00047 29.8 1.1 19 189-208 166-184 (197)
232 cd03074 PDI_b'_Calsequestrin_C 33.0 1.9E+02 0.0041 23.2 6.3 54 134-188 6-66 (120)
233 TIGR03439 methyl_EasF probable 32.0 1.3E+02 0.0029 27.8 6.2 34 152-185 79-113 (319)
234 cd03020 DsbA_DsbC_DsbG DsbA fa 31.6 79 0.0017 26.3 4.3 13 157-169 89-101 (197)
235 PRK11657 dsbG disulfide isomer 30.9 87 0.0019 27.7 4.6 17 157-173 129-145 (251)
236 COG1744 Med Uncharacterized AB 30.1 58 0.0013 30.3 3.5 28 158-185 103-130 (345)
237 PF05361 PP1_inhibitor: PKC-ac 28.9 84 0.0018 26.1 3.8 42 88-145 71-112 (144)
238 PF02608 Bmp: Basic membrane p 28.8 44 0.00094 30.1 2.4 24 163-186 72-95 (306)
239 PF04592 SelP_N: Selenoprotein 28.3 94 0.002 27.9 4.3 40 148-187 25-73 (238)
240 PF05047 L51_S25_CI-B8: Mitoch 28.2 1.6E+02 0.0035 19.2 4.6 36 163-206 5-41 (52)
241 cd03013 PRX5_like Peroxiredoxi 28.0 1.1E+02 0.0025 24.6 4.6 36 150-185 30-74 (155)
242 PF06491 Disulph_isomer: Disul 27.9 3.5E+02 0.0075 22.3 11.3 93 117-215 7-115 (136)
243 cd06353 PBP1_BmpA_Med_like Per 27.6 69 0.0015 28.0 3.4 27 159-185 64-90 (258)
244 PF14459 Prok-E2_C: Prokaryoti 27.5 2.3E+02 0.0051 22.7 5.9 57 151-208 28-93 (131)
245 PF11287 DUF3088: Protein of u 26.9 75 0.0016 25.3 3.1 48 156-203 23-76 (112)
246 cd01840 SGNH_hydrolase_yrhL_li 26.6 2.5E+02 0.0055 22.0 6.3 48 136-183 66-117 (150)
247 PF03190 Thioredox_DsbH: Prote 26.0 1.3E+02 0.0029 25.3 4.6 75 135-213 26-121 (163)
248 PRK12772 bifunctional flagella 24.7 1.4E+02 0.003 30.2 5.3 84 90-175 477-565 (609)
249 PF06053 DUF929: Domain of unk 24.0 2.8E+02 0.006 25.0 6.5 70 126-204 40-114 (249)
250 cd03025 DsbA_FrnE_like DsbA fa 23.4 85 0.0018 25.4 3.0 23 190-213 164-186 (193)
251 PF10281 Ish1: Putative stress 23.3 1.2E+02 0.0027 18.8 3.1 23 48-71 10-32 (38)
252 TIGR02742 TrbC_Ftype type-F co 23.2 2.6E+02 0.0057 22.5 5.7 66 137-206 15-82 (130)
253 PF09803 DUF2346: Uncharacteri 22.9 46 0.001 24.8 1.2 37 22-60 10-46 (80)
254 PRK05702 flhB flagellar biosyn 22.2 1.9E+02 0.0041 27.3 5.4 84 90-175 221-309 (359)
255 PRK12468 flhB flagellar biosyn 22.0 1.9E+02 0.004 27.7 5.3 84 90-175 221-309 (386)
256 cd00643 HMG-CoA_reductase_clas 22.0 6.7E+02 0.014 24.3 9.0 76 104-188 139-225 (403)
257 PRK08156 type III secretion sy 21.9 1.9E+02 0.004 27.5 5.3 84 90-175 209-297 (361)
258 PRK10877 protein disulfide iso 21.8 46 0.00099 29.1 1.1 31 150-180 108-142 (232)
259 PF05988 DUF899: Bacterial pro 21.7 1.5E+02 0.0032 26.2 4.2 37 147-183 66-113 (211)
260 PF02597 ThiS: ThiS family; I 21.2 88 0.0019 21.6 2.3 37 158-210 19-55 (77)
261 PRK06298 type III secretion sy 20.9 2.1E+02 0.0046 27.0 5.4 84 90-175 215-303 (356)
262 cd03060 GST_N_Omega_like GST_N 20.0 2.2E+02 0.0048 19.2 4.2 52 153-208 3-60 (71)
No 1
>KOG3170|consensus
Probab=100.00 E-value=8.5e-60 Score=401.45 Aligned_cols=186 Identities=49% Similarity=0.893 Sum_probs=174.0
Q ss_pred CCCCCCCccchHHHHHcCCCCCCCCCCChhHHHHHHHHHHHHhhhhchhhccCCChhHHhhccCh---hcHHHHHHHHHH
Q psy14385 38 KPNYEEDTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELEDE---EDERVLQEYRRK 114 (228)
Q Consensus 38 ~~~~~edTewnDilrk~Gi~p~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ldeL~elede---eDd~~Le~yR~k 114 (228)
++||++||||||||||+||||+|++.++ +.+.+++++++.+ ++++++++++|+||++|||+ +||+|||+||++
T Consensus 1 ~~d~~~dtewnDIlRkkGiLPekep~~~-~~~~ea~~~~~~~---~~~~~~edk~leeLeelEDded~dDerfLE~YR~k 76 (240)
T KOG3170|consen 1 MDDESEDTEWNDILRKKGILPEKEPSPD-AKLEEALEEAIAK---SHENRLEDKDLEELEELEDDEDSDDERFLEMYRIK 76 (240)
T ss_pred CCCcccccchHHHHHhcCCCCCCCCCcc-hhhhHHHHHHHHH---HHHhhhhcccHHHHHHhhhcccccHHHHHHHHHHH
Confidence 4699999999999999999999998877 5566666666654 79999999999999999876 456699999999
Q ss_pred HHHHHHHHHhccCCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCCCC
Q psy14385 115 RIAEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPN 190 (228)
Q Consensus 115 Rl~ELk~~~~~~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~~~ 190 (228)
||+||+..+.+++||+|++||+.+|+++||++|.+.|||||+ .+.|++++.||..||.+||.+|||||.++.|++|
T Consensus 77 Rl~E~r~~~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cIpN 156 (240)
T KOG3170|consen 77 RLAEWRATAEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCIPN 156 (240)
T ss_pred HHHHHHHHHHHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccccCC
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEECCEEEeEEeCccccC-CCCCccccC
Q psy14385 191 YPDKNLPTLFIYFEGKMQSQMVGPDEFR-TNLSCDANV 227 (228)
Q Consensus 191 y~v~~LPTllvYk~G~~v~~lvG~~~~G-~~~t~e~~~ 227 (228)
||.+|||||+||..|.+.+|+||+..|| |++|++++.
T Consensus 157 YPe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e 194 (240)
T KOG3170|consen 157 YPESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVE 194 (240)
T ss_pred CcccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHH
Confidence 9999999999999999999999999999 999999863
No 2
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=100.00 E-value=3.5e-54 Score=367.86 Aligned_cols=178 Identities=54% Similarity=0.891 Sum_probs=161.6
Q ss_pred ccchHHHHHcCCCCCCCCCCChhHHHHHHHHHHHHhhhhchhhccCCChhHHhhccChhcH-HHHHHHHHHHHHHHHHHH
Q psy14385 45 TQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELEDEEDE-RVLQEYRRKRIAEMKAMA 123 (228)
Q Consensus 45 TewnDilrk~Gi~p~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ldeL~eledeeDd-~~Le~yR~kRl~ELk~~~ 123 (228)
|||||||||||||||||++++++...... .+.. .++.++++++++|||++++|++|| +||++||++||+||++.+
T Consensus 1 tew~di~r~~g~~p~~~~~~~~~~~~~~~-~~~~---~~~~~~~e~~~~~el~~~~d~~~d~~~Le~yR~kRl~el~~~~ 76 (192)
T cd02988 1 TEWNDILRKKGILPPKPPSPKEEEEEALE-LAIQ---EAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKALA 76 (192)
T ss_pred CchhHHHHHcCCCCCCCCCCchhhHHHHH-HHHH---HHHHhHhhhccHHHHHHhhcccccHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999988876554333 3332 257899999999999988766544 499999999999999998
Q ss_pred hccCCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCCCCCCCcEE
Q psy14385 124 EKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTL 199 (228)
Q Consensus 124 ~~~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~~~y~v~~LPTl 199 (228)
++++||.|++|+.++|..+|++++++.+||||| |++|++|+++|++||++|+.++|++|+++.|+++|+++++|||
T Consensus 77 ~~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~~~~~~i~~lPTl 156 (192)
T cd02988 77 EKSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQCIPNYPDKNLPTI 156 (192)
T ss_pred hhCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHhHhhCCCCCCCEE
Confidence 899999999999999999999887677999999 9999999999999999999999999999999999999999999
Q ss_pred EEEECCEEEeEEeCccccC-CCCCcccc
Q psy14385 200 FIYFEGKMQSQMVGPDEFR-TNLSCDAN 226 (228)
Q Consensus 200 lvYk~G~~v~~lvG~~~~G-~~~t~e~~ 226 (228)
++|+||+++++++|+..+| ++||++++
T Consensus 157 liyk~G~~v~~ivG~~~~gg~~~~~~~l 184 (192)
T cd02988 157 LVYRNGDIVKQFIGLLEFGGMNTTMEDL 184 (192)
T ss_pred EEEECCEEEEEEeCchhhCCCCCCHHHH
Confidence 9999999999999999999 99998875
No 3
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=100.00 E-value=2.8e-34 Score=256.27 Aligned_cols=142 Identities=39% Similarity=0.745 Sum_probs=110.9
Q ss_pred hhhccCCChhHHhhcc-ChhcHHHHHHHHHHHHHHHHHHHh-ccCCCceEEe-ChhhHHHHHHhcCCCceEEEEe----c
Q psy14385 85 EKELGDMDLDDLDELE-DEEDERVLQEYRRKRIAEMKAMAE-KSRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF----I 157 (228)
Q Consensus 85 ~~~~e~~~ldeL~ele-deeDd~~Le~yR~kRl~ELk~~~~-~~~fG~V~eI-s~edf~~eV~~a~~~~~VVVhf----~ 157 (228)
.+..++++++|+++++ |++||+||++||++||+||++... .++||.|++| +.++|++.|++.++++|||||| +
T Consensus 79 e~~~~~~~~~e~e~~~~d~eDeefL~~yR~qRm~El~~~~~~~~~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~ 158 (265)
T PF02114_consen 79 EKLSEKMSLDELEELEDDEEDEEFLEQYREQRMQELKQKLQKGPRFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGF 158 (265)
T ss_dssp S----SS-HHHHHHHCC----HHHHHHHHHHHHHHHHHHH-------SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTS
T ss_pred hhhcccccHhHHhhhhcccccHHHHHHHHHHHHHHHHHHHHhCCcCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCC
Confidence 4455678999999886 567889999999999999997644 5889999999 5689999999888889999999 9
Q ss_pred cchHHHHHHHHHHHHhCCCcEEEEEeCCC--CCCCCCCCCCcEEEEEECCEEEeEEeCccccC-CCCCcccc
Q psy14385 158 PLCSLINNHLSELAAKFPTTKFIKSISTT--CIPNYPDKNLPTLFIYFEGKMQSQMVGPDEFR-TNLSCDAN 226 (228)
Q Consensus 158 ~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--~~~~y~v~~LPTllvYk~G~~v~~lvG~~~~G-~~~t~e~~ 226 (228)
+.|.+|+.+|..||++||.||||+|.++. |+++|++++|||||+||+|+++++|||+..+| ++|+++++
T Consensus 159 ~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dl 230 (265)
T PF02114_consen 159 PRCEIMNSCLECLARKYPEVKFVKIRASKCPASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDL 230 (265)
T ss_dssp CCHHHHHHHHHHHHHH-TTSEEEEEEECGCCTTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHH
T ss_pred chHHHHHHHHHHHHHhCCceEEEEEehhccCcccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHH
Confidence 99999999999999999999999999987 47999999999999999999999999999887 88988764
No 4
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=100.00 E-value=1.1e-32 Score=231.95 Aligned_cols=137 Identities=28% Similarity=0.521 Sum_probs=121.0
Q ss_pred CCChhHHhhccChhcHHHHHHHHHHHHHHHHHHH-hccCCCceEEeCh-hhHHHHHHhcCCCceEEEEe----ccchHHH
Q psy14385 90 DMDLDDLDELEDEEDERVLQEYRRKRIAEMKAMA-EKSRFGRVLEING-DTYVQEVNNAGEGIWVVLHF----IPLCSLI 163 (228)
Q Consensus 90 ~~~ldeL~eledeeDd~~Le~yR~kRl~ELk~~~-~~~~fG~V~eIs~-edf~~eV~~a~~~~~VVVhf----~~~C~~l 163 (228)
+.+.++|++++| ++|++|++||++||+||++.. .+.+||.|++|+. ++|...|++++++++||||| |++|+.|
T Consensus 23 ~~~~~~~d~~~~-~~e~~l~~~R~~R~~el~~~~~~~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m 101 (175)
T cd02987 23 KESEQEDDDDDE-DKEEFLQQYREQRMQEMHAKLPFGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAAL 101 (175)
T ss_pred hchhhhhhhhhh-hHHHHHHHHHHHHHHHHHHhccccCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHH
Confidence 445556665543 347899999999999999965 5788999999987 99999998877667999999 9999999
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCC--CCCCCCCCCCcEEEEEECCEEEeEEeCccccC-CCCCccccC
Q psy14385 164 NNHLSELAAKFPTTKFIKSISTT--CIPNYPDKNLPTLFIYFEGKMQSQMVGPDEFR-TNLSCDANV 227 (228)
Q Consensus 164 ~~~L~~LA~kyp~~KFvkI~ad~--~~~~y~v~~LPTllvYk~G~~v~~lvG~~~~G-~~~t~e~~~ 227 (228)
+++|+.||++||.++|++||++. ++.+|+++++|||++|++|+.+++++|+.++| .+|++++.+
T Consensus 102 ~~~l~~LA~~~~~vkF~kVd~d~~~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le 168 (175)
T cd02987 102 NSSLLCLAAEYPAVKFCKIRASATGASDEFDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLE 168 (175)
T ss_pred HHHHHHHHHHCCCeEEEEEeccchhhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHH
Confidence 99999999999999999999996 57999999999999999999999999999988 999887653
No 5
>KOG1672|consensus
Probab=99.93 E-value=9.6e-26 Score=191.88 Aligned_cols=119 Identities=28% Similarity=0.448 Sum_probs=106.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhc------cCCCceEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHH
Q psy14385 104 DERVLQEYRRKRIAEMKAMAEK------SRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAA 172 (228)
Q Consensus 104 Dd~~Le~yR~kRl~ELk~~~~~------~~fG~V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ 172 (228)
|++.++..|++||++|++.+.+ .+||.+.+| +..+|+..++++ .-||||| +.+|++|+.||+.||+
T Consensus 35 d~~dle~lr~qRl~~lkk~~~kr~~~~~~GhG~y~ev~~Ekdf~~~~~kS---~kVVcHFY~~~f~RCKimDkhLe~LAk 111 (211)
T KOG1672|consen 35 DEDDLEVLREQRLEQLKKEQEKRKEWLSKGHGEYEEVASEKDFFEEVKKS---EKVVCHFYRPEFFRCKIMDKHLEILAK 111 (211)
T ss_pred CchhHHHhHHHHHHHHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhhcC---ceEEEEEEcCCCcceehHHHHHHHHHH
Confidence 3444677799999999987653 689999999 588999999866 3699999 8999999999999999
Q ss_pred hCCCcEEEEEeCCCCC---CCCCCCCCcEEEEEECCEEEeEEeCccccC--CCCCccc
Q psy14385 173 KFPTTKFIKSISTTCI---PNYPDKNLPTLFIYFEGKMQSQMVGPDEFR--TNLSCDA 225 (228)
Q Consensus 173 kyp~~KFvkI~ad~~~---~~y~v~~LPTllvYk~G~~v~~lvG~~~~G--~~~t~e~ 225 (228)
+|..|+|+||||+.|+ .++.++.|||+++|+||..++++|||..+| +.||++.
T Consensus 112 ~h~eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~D~iVGF~dLGnkDdF~te~ 169 (211)
T KOG1672|consen 112 RHVETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTVDYVVGFTDLGNKDDFTTET 169 (211)
T ss_pred hcccceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEEEEEeeHhhcCCCCcCcHHH
Confidence 9999999999999985 899999999999999999999999999999 8888764
No 6
>KOG3171|consensus
Probab=99.89 E-value=5.9e-23 Score=177.54 Aligned_cols=139 Identities=29% Similarity=0.536 Sum_probs=121.3
Q ss_pred hhchhhccCCChhHHhhc-cChhcHHHHHHHHHHHHHHHHHHHh-ccCCCceEEe-ChhhHHHHHHhcCCCceEEEEe--
Q psy14385 82 GKGEKELGDMDLDDLDEL-EDEEDERVLQEYRRKRIAEMKAMAE-KSRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF-- 156 (228)
Q Consensus 82 ~~~~~~~e~~~ldeL~el-edeeDd~~Le~yR~kRl~ELk~~~~-~~~fG~V~eI-s~edf~~eV~~a~~~~~VVVhf-- 156 (228)
+..++.-.+|+++|.... ++.+|+.+|++||+|||++|++..+ .++||.|+++ ++.+|+..|.+.-+...++||.
T Consensus 89 d~kEkvsrkms~~E~~~m~~~~~de~~L~~yr~qrm~eMrq~l~~gp~~~~V~El~~gkqfld~idke~ks~~i~VhIYE 168 (273)
T KOG3171|consen 89 DSKEKVSRKMSIQEYELMHKEKEDENCLRKYRRQRMQEMRQKLSFGPRYGFVYELETGKQFLDTIDKELKSTTIVVHIYE 168 (273)
T ss_pred hhHHHhhccccHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHhhcCCccceEEEeccchhHHHHHhcccceEEEEEEEec
Confidence 355666778899888766 3557899999999999999998765 6999999999 7899999999875567788898
Q ss_pred --ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--CCCCCCCCCCcEEEEEECCEEEeEEeCcc-ccCCC
Q psy14385 157 --IPLCSLINNHLSELAAKFPTTKFIKSISTT--CIPNYPDKNLPTLFIYFEGKMQSQMVGPD-EFRTN 220 (228)
Q Consensus 157 --~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--~~~~y~v~~LPTllvYk~G~~v~~lvG~~-~~G~~ 220 (228)
++.|..|+.+|.-||+.||.+|||||-++. +..+|.-.+||||++|++|+++++||... .||.+
T Consensus 169 dgi~gcealn~~~~cLAAeyP~vKFckikss~~gas~~F~~n~lP~LliYkgGeLIgNFv~va~qlged 237 (273)
T KOG3171|consen 169 DGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLGED 237 (273)
T ss_pred CCCchHHHHhhhHHHhhccCCceeEEEeeeccccchhhhcccCCceEEEeeCCchhHHHHHHHHHHhhh
Confidence 999999999999999999999999999886 57899999999999999999999999875 55633
No 7
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.81 E-value=9.2e-20 Score=141.81 Aligned_cols=100 Identities=37% Similarity=0.697 Sum_probs=90.4
Q ss_pred cCCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--CCCCCCCCCCcEE
Q psy14385 126 SRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT--CIPNYPDKNLPTL 199 (228)
Q Consensus 126 ~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--~~~~y~v~~LPTl 199 (228)
.+||.|.+|+.++|.+.|.+++.+.+|||+| |++|+.|.+.|++||.+|++++|++||+++ .+.+|++.++||+
T Consensus 1 ~~~g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~~l~~~~~i~~~Pt~ 80 (113)
T cd02957 1 KGFGEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKAFLVNYLDIKVLPTL 80 (113)
T ss_pred CCCceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhhHHHHhcCCCcCCEE
Confidence 3799999999999999998765456899999 999999999999999999999999999996 4688999999999
Q ss_pred EEEECCEEEeEEeCccccC-CCCCccc
Q psy14385 200 FIYFEGKMQSQMVGPDEFR-TNLSCDA 225 (228)
Q Consensus 200 lvYk~G~~v~~lvG~~~~G-~~~t~e~ 225 (228)
++|++|+.+++++|...++ .+++.+.
T Consensus 81 ~~f~~G~~v~~~~G~~~~~~~~~~~~~ 107 (113)
T cd02957 81 LVYKNGELIDNIVGFEELGGDDFTTED 107 (113)
T ss_pred EEEECCEEEEEEecHHHhCCCCCCHHH
Confidence 9999999999999999887 7777654
No 8
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.79 E-value=4.8e-19 Score=138.83 Aligned_cols=98 Identities=29% Similarity=0.471 Sum_probs=87.8
Q ss_pred cCCCceEEeCh-hhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCc
Q psy14385 126 SRFGRVLEING-DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLP 197 (228)
Q Consensus 126 ~~fG~V~eIs~-edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LP 197 (228)
.+||++.+|+. ++|.+.+.+. .+|||+| |++|+.|.+.|++||++||+++|++||+++. +.+|++.++|
T Consensus 1 ~~~g~v~~i~~~~~~~~~i~~~---~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vP 77 (113)
T cd02989 1 KGHGKYREVSDEKEFFEIVKSS---ERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLP 77 (113)
T ss_pred CCCCCeEEeCCHHHHHHHHhCC---CcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCC
Confidence 36999999966 8998888644 4788888 9999999999999999999999999999985 5889999999
Q ss_pred EEEEEECCEEEeEEeCccccC--CCCCcccc
Q psy14385 198 TLFIYFEGKMQSQMVGPDEFR--TNLSCDAN 226 (228)
Q Consensus 198 TllvYk~G~~v~~lvG~~~~G--~~~t~e~~ 226 (228)
|+++|++|+.+++++|+.++| .+++.+..
T Consensus 78 t~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~ 108 (113)
T cd02989 78 TVILFKNGKTVDRIVGFEELGGKDDFSTETL 108 (113)
T ss_pred EEEEEECCEEEEEEECccccCCCCCCCHHHH
Confidence 999999999999999999997 77776654
No 9
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.61 E-value=3.8e-15 Score=118.10 Aligned_cols=80 Identities=19% Similarity=0.261 Sum_probs=70.9
Q ss_pred ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEEEEECCE
Q psy14385 135 NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLFIYFEGK 206 (228)
Q Consensus 135 s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~ 206 (228)
+.++|...+..++ +.+|||+| |++|+.|.|.|++||.+|++ ++|++||+++. +..|++.++||+++||+|+
T Consensus 1 ~~~~~~~~i~~~~-~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 1 SGWAVDQAILSEE-EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred CHHHHHHHHhccC-CCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 3577888887433 46899999 99999999999999999997 69999999986 5899999999999999999
Q ss_pred EEeEEeCcc
Q psy14385 207 MQSQMVGPD 215 (228)
Q Consensus 207 ~v~~lvG~~ 215 (228)
.+++++|..
T Consensus 80 ~v~~~~G~~ 88 (114)
T cd02954 80 HMKIDLGTG 88 (114)
T ss_pred EEEEEcCCC
Confidence 999999965
No 10
>KOG0907|consensus
Probab=99.60 E-value=5.6e-15 Score=115.54 Aligned_cols=83 Identities=25% Similarity=0.437 Sum_probs=70.7
Q ss_pred EeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECC
Q psy14385 133 EINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEG 205 (228)
Q Consensus 133 eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G 205 (228)
..+..++.....+++ +..|||+| |+||+.|.|.+..||.+||++.|+++|++++ +..|+++.+|||++||+|
T Consensus 6 ~~~~~~~~~~~~~~~-~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g 84 (106)
T KOG0907|consen 6 TVSDLDLVLSAAEAG-DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGG 84 (106)
T ss_pred ehhhHHHHHHHhhCC-CCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECC
Confidence 334444554454443 47999999 9999999999999999999999999999984 478999999999999999
Q ss_pred EEEeEEeCccc
Q psy14385 206 KMQSQMVGPDE 216 (228)
Q Consensus 206 ~~v~~lvG~~~ 216 (228)
+.+++++|...
T Consensus 85 ~~~~~~vGa~~ 95 (106)
T KOG0907|consen 85 EEVDEVVGANK 95 (106)
T ss_pred EEEEEEecCCH
Confidence 99999999864
No 11
>KOG0910|consensus
Probab=99.57 E-value=6.9e-15 Score=121.30 Aligned_cols=85 Identities=19% Similarity=0.334 Sum_probs=76.5
Q ss_pred eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEE
Q psy14385 131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIY 202 (228)
Q Consensus 131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvY 202 (228)
+.-.+..+|...|.+++ ++|+|.| |+||+.|.|.|++++.+|. .++|++||.++. +..|.|+.+||+++|
T Consensus 45 ~~~~s~~~~~~~Vi~S~--~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVINSD--VPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred ccccCHHHHHHHHHccC--CCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 33448899999999875 7999999 9999999999999999985 599999999984 689999999999999
Q ss_pred ECCEEEeEEeCcccc
Q psy14385 203 FEGKMQSQMVGPDEF 217 (228)
Q Consensus 203 k~G~~v~~lvG~~~~ 217 (228)
+||+.+++++|..+-
T Consensus 123 knGe~~d~~vG~~~~ 137 (150)
T KOG0910|consen 123 KNGEKVDRFVGAVPK 137 (150)
T ss_pred ECCEEeeeecccCCH
Confidence 999999999998753
No 12
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.54 E-value=3.6e-14 Score=108.74 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=72.0
Q ss_pred ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC------CCCCCCCCCcEEEEEEC
Q psy14385 135 NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC------IPNYPDKNLPTLFIYFE 204 (228)
Q Consensus 135 s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~------~~~y~v~~LPTllvYk~ 204 (228)
|.++|.+.|.++ ++.+|||+| |++|+.|.|.|..||++|+.+.|++||+++. +..|++.++||+++|++
T Consensus 2 ~~~~~~~~i~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKA-KGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHc-CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 457888888765 357999999 9999999999999999999999999998863 36899999999999999
Q ss_pred CEEEeEEeCccc
Q psy14385 205 GKMQSQMVGPDE 216 (228)
Q Consensus 205 G~~v~~lvG~~~ 216 (228)
|+.+.++.|...
T Consensus 81 G~~v~~~~G~~~ 92 (103)
T cd02985 81 GEKIHEEEGIGP 92 (103)
T ss_pred CeEEEEEeCCCH
Confidence 999999999764
No 13
>KOG0908|consensus
Probab=99.53 E-value=2.1e-14 Score=127.05 Aligned_cols=88 Identities=27% Similarity=0.479 Sum_probs=81.5
Q ss_pred ceEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385 130 RVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFI 201 (228)
Q Consensus 130 ~V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllv 201 (228)
.|+.| +.++|..++..++ ++.|||.| |+||+.+.|+|+.||.|||..-|+|+|+++| +..+++..+||+++
T Consensus 2 ~Vi~v~~d~df~~~ls~ag-~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAG-GKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIF 80 (288)
T ss_pred CeEEecCcHHHHHhhhccC-ceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEE
Confidence 37788 6799999998775 57999999 9999999999999999999999999999998 58899999999999
Q ss_pred EECCEEEeEEeCccccC
Q psy14385 202 YFEGKMQSQMVGPDEFR 218 (228)
Q Consensus 202 Yk~G~~v~~lvG~~~~G 218 (228)
|+||..++++-|.+.-|
T Consensus 81 f~ng~kid~~qGAd~~g 97 (288)
T KOG0908|consen 81 FRNGVKIDQIQGADASG 97 (288)
T ss_pred EecCeEeeeecCCCHHH
Confidence 99999999999998766
No 14
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.51 E-value=7.5e-14 Score=111.43 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=75.8
Q ss_pred CCceEEeChhhHHHHHHhcCCCceEEEEe----ccc--hH--HHHHHHHHHHHhC--C-CcEEEEEeCCCC---CCCCCC
Q psy14385 128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPL--CS--LINNHLSELAAKF--P-TTKFIKSISTTC---IPNYPD 193 (228)
Q Consensus 128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~--C~--~l~~~L~~LA~ky--p-~~KFvkI~ad~~---~~~y~v 193 (228)
+-.|..++.++|.+.|.+++ .+||++| |++ |+ +|.|+|.++|+++ . +++|++||+++. +.+|++
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~--~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I 85 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYD--VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL 85 (120)
T ss_pred CcceeeCChhhHHHHHHhCC--ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC
Confidence 34688899999999998775 6888888 776 99 9999999999998 4 599999999984 589999
Q ss_pred CCCcEEEEEECCEEEeEEeCccc
Q psy14385 194 KNLPTLFIYFEGKMQSQMVGPDE 216 (228)
Q Consensus 194 ~~LPTllvYk~G~~v~~lvG~~~ 216 (228)
+++|||++|+||+.+. ++|...
T Consensus 86 ~~iPTl~lfk~G~~v~-~~G~~~ 107 (120)
T cd03065 86 DEEDSIYVFKDDEVIE-YDGEFA 107 (120)
T ss_pred ccccEEEEEECCEEEE-eeCCCC
Confidence 9999999999999998 999764
No 15
>PHA02278 thioredoxin-like protein
Probab=99.50 E-value=8.1e-14 Score=108.11 Aligned_cols=78 Identities=8% Similarity=0.086 Sum_probs=66.7
Q ss_pred ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC-CCcEEEEEeCCC-------CCCCCCCCCCcEEEEE
Q psy14385 135 NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF-PTTKFIKSISTT-------CIPNYPDKNLPTLFIY 202 (228)
Q Consensus 135 s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky-p~~KFvkI~ad~-------~~~~y~v~~LPTllvY 202 (228)
+.++|.+.+.+ +.+|||+| |++|+.|.|.|+++|.++ ..+.|++||++. .+.+|.++++||+++|
T Consensus 3 ~~~~~~~~i~~---~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 3 SLVDLNTAIRQ---KKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred CHHHHHHHHhC---CCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence 45678888843 35889999 999999999999999985 457899999885 2478999999999999
Q ss_pred ECCEEEeEEeCcc
Q psy14385 203 FEGKMQSQMVGPD 215 (228)
Q Consensus 203 k~G~~v~~lvG~~ 215 (228)
+||+.+++++|..
T Consensus 80 k~G~~v~~~~G~~ 92 (103)
T PHA02278 80 KDGQLVKKYEDQV 92 (103)
T ss_pred ECCEEEEEEeCCC
Confidence 9999999999965
No 16
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.50 E-value=9.6e-14 Score=109.61 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=72.1
Q ss_pred eEEeChhhHHHHHHhcCCCceEEEEe------ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385 131 VLEINGDTYVQEVNNAGEGIWVVLHF------IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLF 200 (228)
Q Consensus 131 V~eIs~edf~~eV~~a~~~~~VVVhf------~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTll 200 (228)
+-+++..+|.+.+ +++ ..+||.| ||+|+.|.|+|.++|++|++ ++|+++|+++. +..|+++++|||+
T Consensus 12 ~~~~~~~~~~~~~-~~~--~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 12 WPRVDAATLDDWL-AAG--GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred CcccccccHHHHH-hCC--CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 3467888888555 443 5788888 99999999999999999987 78999999984 6899999999999
Q ss_pred EEECCEEEeEEeCccc
Q psy14385 201 IYFEGKMQSQMVGPDE 216 (228)
Q Consensus 201 vYk~G~~v~~lvG~~~ 216 (228)
+|++|+.+++++|...
T Consensus 89 ~fkdGk~v~~~~G~~~ 104 (111)
T cd02965 89 FFRDGRYVGVLAGIRD 104 (111)
T ss_pred EEECCEEEEEEeCccC
Confidence 9999999999999764
No 17
>PTZ00051 thioredoxin; Provisional
Probab=99.47 E-value=4.3e-13 Score=100.21 Aligned_cols=84 Identities=14% Similarity=0.273 Sum_probs=70.6
Q ss_pred eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEE
Q psy14385 131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYF 203 (228)
Q Consensus 131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk 203 (228)
|.+|+..+.+..+.+.+ .+|+|+| |++|+.+.+.|..++++|++++|+.+|.++. ...|++.++||+++|+
T Consensus 2 v~~i~~~~~~~~~~~~~--~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQN--ELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred eEEecCHHHHHHHHhcC--CeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence 56775444444444443 5888888 9999999999999999999999999999974 5889999999999999
Q ss_pred CCEEEeEEeCccc
Q psy14385 204 EGKMQSQMVGPDE 216 (228)
Q Consensus 204 ~G~~v~~lvG~~~ 216 (228)
+|+.++++.|...
T Consensus 80 ~g~~~~~~~G~~~ 92 (98)
T PTZ00051 80 NGSVVDTLLGAND 92 (98)
T ss_pred CCeEEEEEeCCCH
Confidence 9999999999753
No 18
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.45 E-value=8e-13 Score=98.36 Aligned_cols=81 Identities=21% Similarity=0.453 Sum_probs=71.8
Q ss_pred ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHh-CCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCE
Q psy14385 135 NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAK-FPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGK 206 (228)
Q Consensus 135 s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~k-yp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~ 206 (228)
|.++|.+.+.++. +.+|+|+| |++|+.|.+.|++++.+ ++.++|+++|++.. ..+|++.++||+++|++|+
T Consensus 1 s~~~~~~~~~~~~-~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 1 SEEEFEELLKSDA-SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred CHHHHHHHHhhCC-CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 4578888888774 56888888 99999999999999999 78899999999875 4889999999999999999
Q ss_pred EEeEEeCccc
Q psy14385 207 MQSQMVGPDE 216 (228)
Q Consensus 207 ~v~~lvG~~~ 216 (228)
.+.++.|...
T Consensus 80 ~~~~~~g~~~ 89 (97)
T cd02984 80 IVDRVSGADP 89 (97)
T ss_pred EEEEEeCCCH
Confidence 9999999753
No 19
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.42 E-value=1.7e-12 Score=96.50 Aligned_cols=83 Identities=25% Similarity=0.440 Sum_probs=74.9
Q ss_pred eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEE
Q psy14385 131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIY 202 (228)
Q Consensus 131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvY 202 (228)
|..++.++|.+.+.+. +.+|||.| |++|+.+.+.|.++|++|+ .+.|++||.++. ...|.+.++||+++|
T Consensus 1 v~~lt~~~f~~~i~~~--~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINES--DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTT--SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred CEECCHHHHHHHHHcc--CCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 4678999999999863 35788888 9999999999999999998 899999999974 589999999999999
Q ss_pred ECCEEEeEEeCcc
Q psy14385 203 FEGKMQSQMVGPD 215 (228)
Q Consensus 203 k~G~~v~~lvG~~ 215 (228)
++|+.+.++.|..
T Consensus 79 ~~g~~~~~~~g~~ 91 (103)
T PF00085_consen 79 KNGKEVKRYNGPR 91 (103)
T ss_dssp ETTEEEEEEESSS
T ss_pred ECCcEEEEEECCC
Confidence 9999999999974
No 20
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.42 E-value=8.8e-13 Score=104.59 Aligned_cols=74 Identities=14% Similarity=0.252 Sum_probs=66.5
Q ss_pred hhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEEEEECCEE
Q psy14385 136 GDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLFIYFEGKM 207 (228)
Q Consensus 136 ~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~ 207 (228)
.++|.+.+.++ .+++|||+| |++|+.|+|.|++||.+|++ +.|+++|+++. +..|.++.+||+++|++|+-
T Consensus 2 ~~~~d~~i~~~-~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 2 KKEVDQAIKST-AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHHhc-CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 56788888877 358999999 99999999999999999998 99999999986 48999999999999999987
Q ss_pred EeE
Q psy14385 208 QSQ 210 (228)
Q Consensus 208 v~~ 210 (228)
+.-
T Consensus 81 ~~~ 83 (114)
T cd02986 81 MKV 83 (114)
T ss_pred EEE
Confidence 653
No 21
>PTZ00062 glutaredoxin; Provisional
Probab=99.41 E-value=1.1e-12 Score=113.60 Aligned_cols=76 Identities=13% Similarity=0.174 Sum_probs=67.1
Q ss_pred eChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCCCCCCCcEEEEEECCEEEe
Q psy14385 134 INGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQS 209 (228)
Q Consensus 134 Is~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~~~y~v~~LPTllvYk~G~~v~ 209 (228)
++.++|.+.+.+. . ..+|++| |++|+.|+++|.+||.+||+++|++|+++ |+|.++||+++|++|+.++
T Consensus 4 ~~~ee~~~~i~~~-~-g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----~~V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 4 IKKEEKDKLIESN-T-GKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----DANNEYGVFEFYQNSQLIN 76 (204)
T ss_pred CCHHHHHHHHhcC-C-CcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----cCcccceEEEEEECCEEEe
Confidence 4667888777532 1 3578888 99999999999999999999999999998 9999999999999999999
Q ss_pred EEeCccc
Q psy14385 210 QMVGPDE 216 (228)
Q Consensus 210 ~lvG~~~ 216 (228)
+++|...
T Consensus 77 r~~G~~~ 83 (204)
T PTZ00062 77 SLEGCNT 83 (204)
T ss_pred eeeCCCH
Confidence 9999763
No 22
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.40 E-value=1.3e-12 Score=107.26 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=70.6
Q ss_pred EEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEE-E
Q psy14385 132 LEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLF-I 201 (228)
Q Consensus 132 ~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTll-v 201 (228)
.+| |..+|.+.+..++ +.+|||.| |++|+.|.|+|+++|++|++ +.|++||+++. +..|.+++.||++ +
T Consensus 6 ~~l~s~~e~d~~I~~~~-~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~f 84 (142)
T PLN00410 6 PHLHSGWAVDQAILAEE-ERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFF 84 (142)
T ss_pred hhhCCHHHHHHHHHhcC-CCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEE
Confidence 455 6789999887553 57899999 99999999999999999987 88899999985 5899999775555 9
Q ss_pred EECCE-EEeEEeCc
Q psy14385 202 YFEGK-MQSQMVGP 214 (228)
Q Consensus 202 Yk~G~-~v~~lvG~ 214 (228)
||+|+ .+++.+|.
T Consensus 85 fk~g~~~vd~~tG~ 98 (142)
T PLN00410 85 FRNKHIMIDLGTGN 98 (142)
T ss_pred EECCeEEEEEeccc
Confidence 99999 99999994
No 23
>PRK09381 trxA thioredoxin; Provisional
Probab=99.38 E-value=4e-12 Score=97.16 Aligned_cols=85 Identities=21% Similarity=0.425 Sum_probs=74.5
Q ss_pred ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385 130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFI 201 (228)
Q Consensus 130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllv 201 (228)
.|.+++.++|.+++.+.+ .+|||+| |++|+.+.+.|++||++|+ .++|+++|.+.. ...|+++++||+++
T Consensus 4 ~v~~~~~~~~~~~v~~~~--~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 81 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKAD--GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL 81 (109)
T ss_pred cceeeChhhHHHHHhcCC--CeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence 478899999999887653 5788888 9999999999999999995 589999999875 36799999999999
Q ss_pred EECCEEEeEEeCccc
Q psy14385 202 YFEGKMQSQMVGPDE 216 (228)
Q Consensus 202 Yk~G~~v~~lvG~~~ 216 (228)
|++|+.+.++.|...
T Consensus 82 ~~~G~~~~~~~G~~~ 96 (109)
T PRK09381 82 FKNGEVAATKVGALS 96 (109)
T ss_pred EeCCeEEEEecCCCC
Confidence 999999999999754
No 24
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.38 E-value=2.9e-12 Score=101.00 Aligned_cols=88 Identities=10% Similarity=0.106 Sum_probs=73.1
Q ss_pred CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---C-CCCCCCCCcEE
Q psy14385 129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---I-PNYPDKNLPTL 199 (228)
Q Consensus 129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~-~~y~v~~LPTl 199 (228)
+.|.++++++|.+.+.-...+.+|+|.| |++|+.|.+.|+++|++|.+ ++|++||++.. + ..|.+.++|||
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl 88 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVI 88 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEE
Confidence 4689999999998642111235788888 99999999999999999965 89999999863 3 58999999999
Q ss_pred EEEECCEEEeEEeCccc
Q psy14385 200 FIYFEGKMQSQMVGPDE 216 (228)
Q Consensus 200 lvYk~G~~v~~lvG~~~ 216 (228)
++|++|.....+.|...
T Consensus 89 ~lf~~g~~~~~y~G~~~ 105 (113)
T cd03006 89 HLYYRSRGPIEYKGPMR 105 (113)
T ss_pred EEEECCccceEEeCCCC
Confidence 99999998888888653
No 25
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.36 E-value=5.9e-12 Score=104.27 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=74.5
Q ss_pred CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC---CCCCCCCC---
Q psy14385 128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC---IPNYPDKN--- 195 (228)
Q Consensus 128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~---~~~y~v~~--- 195 (228)
.+.+.+++.++|.+.+... ++.+|||+| |++|+.|.+.|+++|.+|. +++|++||+++. +..|.+..
T Consensus 27 ~~~v~~l~~~~f~~~l~~~-~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~ 105 (152)
T cd02962 27 PEHIKYFTPKTLEEELERD-KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPL 105 (152)
T ss_pred CCccEEcCHHHHHHHHHhc-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCC
Confidence 4578899999998877654 345788888 9999999999999999986 499999999874 46677776
Q ss_pred ---CcEEEEEECCEEEeEEeCcc
Q psy14385 196 ---LPTLFIYFEGKMQSQMVGPD 215 (228)
Q Consensus 196 ---LPTllvYk~G~~v~~lvG~~ 215 (228)
+||+++|++|+.+.++.|+.
T Consensus 106 v~~~PT~ilf~~Gk~v~r~~G~~ 128 (152)
T cd02962 106 SKQLPTIILFQGGKEVARRPYYN 128 (152)
T ss_pred cCCCCEEEEEECCEEEEEEeccc
Confidence 99999999999999999965
No 26
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.35 E-value=3.9e-12 Score=96.28 Aligned_cols=84 Identities=14% Similarity=0.116 Sum_probs=73.2
Q ss_pred ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385 130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFI 201 (228)
Q Consensus 130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllv 201 (228)
.|.+++.++|.+.|.+.+ .+|+|+| |++|+.|.+.++++|.+|. .+.|+++|++.. ...|+++++||+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~--~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRK--EPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCC--CeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 467889999999887653 4788888 9999999999999999985 589999999974 47899999999999
Q ss_pred EECC-EEEeEEeCcc
Q psy14385 202 YFEG-KMQSQMVGPD 215 (228)
Q Consensus 202 Yk~G-~~v~~lvG~~ 215 (228)
|++| +.+..+.|..
T Consensus 80 ~~~g~~~~~~~~G~~ 94 (104)
T cd03004 80 YPGNASKYHSYNGWH 94 (104)
T ss_pred EcCCCCCceEccCCC
Confidence 9999 8888888864
No 27
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.35 E-value=5.1e-12 Score=96.48 Aligned_cols=80 Identities=18% Similarity=0.338 Sum_probs=68.3
Q ss_pred Ee-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC--CCCCCCCCCCcEEEEEE
Q psy14385 133 EI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTT--CIPNYPDKNLPTLFIYF 203 (228)
Q Consensus 133 eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~--~~~~y~v~~LPTllvYk 203 (228)
+| |.++|...+. + +.+|||+| |++|+.|.+.|..++.+|. .++|++++++. .+..|.++++||+++|+
T Consensus 3 ~i~~~~~~~~~i~-~--~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~ 79 (102)
T cd02948 3 EINNQEEWEELLS-N--KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYK 79 (102)
T ss_pred EccCHHHHHHHHc-c--CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEE
Confidence 35 6677877664 3 35888988 9999999999999999996 37899999883 45899999999999999
Q ss_pred CCEEEeEEeCcc
Q psy14385 204 EGKMQSQMVGPD 215 (228)
Q Consensus 204 ~G~~v~~lvG~~ 215 (228)
+|+.+.+++|..
T Consensus 80 ~g~~~~~~~G~~ 91 (102)
T cd02948 80 NGELVAVIRGAN 91 (102)
T ss_pred CCEEEEEEecCC
Confidence 999999999964
No 28
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.8e-12 Score=117.28 Aligned_cols=88 Identities=18% Similarity=0.344 Sum_probs=81.8
Q ss_pred ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385 130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFI 201 (228)
Q Consensus 130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllv 201 (228)
.+++||..+|.++|..+|..++|+|.| |++|+.+.|.|++|+..|. .++++|||++.. +..|++++|||+.+
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~a 103 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYA 103 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEE
Confidence 399999999999999999888999999 9999999999999999996 589999999984 58999999999999
Q ss_pred EECCEEEeEEeCcccc
Q psy14385 202 YFEGKMQSQMVGPDEF 217 (228)
Q Consensus 202 Yk~G~~v~~lvG~~~~ 217 (228)
|++|++|+.|.|..+-
T Consensus 104 f~dGqpVdgF~G~qPe 119 (304)
T COG3118 104 FKDGQPVDGFQGAQPE 119 (304)
T ss_pred eeCCcCccccCCCCcH
Confidence 9999999999998754
No 29
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.33 E-value=6.1e-12 Score=97.66 Aligned_cols=85 Identities=8% Similarity=0.033 Sum_probs=73.0
Q ss_pred EEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC---CCCCCCCCCcEEEEE
Q psy14385 132 LEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC---IPNYPDKNLPTLFIY 202 (228)
Q Consensus 132 ~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~---~~~y~v~~LPTllvY 202 (228)
+.++.++|.+.+...+.+++|||+| |++|+.+.+.|.+++++++ .+.|++||.+.. ...|+++++||+++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 4568889988876544457899999 9999999999999999996 589999998763 578999999999999
Q ss_pred ECCEEEeEEeCccc
Q psy14385 203 FEGKMQSQMVGPDE 216 (228)
Q Consensus 203 k~G~~v~~lvG~~~ 216 (228)
++|+.+..+.|...
T Consensus 87 ~~g~~~~~~~G~~~ 100 (111)
T cd02963 87 INGQVTFYHDSSFT 100 (111)
T ss_pred ECCEEEEEecCCCC
Confidence 99999999999653
No 30
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.32 E-value=6e-12 Score=95.08 Aligned_cols=83 Identities=12% Similarity=0.218 Sum_probs=71.1
Q ss_pred ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385 130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFI 201 (228)
Q Consensus 130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllv 201 (228)
.|++++..+|...+.+. .+|+|.| |++|+.|.+.|+++|.++. .++|++||.++. ...|+++.+||+++
T Consensus 2 ~~~~l~~~~f~~~v~~~---~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAVNSG---EIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHhcCC---CeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 47788999999888533 4677777 9999999999999999996 479999999974 47899999999999
Q ss_pred EECCEEEeEEeCcc
Q psy14385 202 YFEGKMQSQMVGPD 215 (228)
Q Consensus 202 Yk~G~~v~~lvG~~ 215 (228)
|++|+.+..+.|..
T Consensus 79 ~~~g~~~~~~~G~~ 92 (101)
T cd03003 79 FPSGMNPEKYYGDR 92 (101)
T ss_pred EcCCCCcccCCCCC
Confidence 99999888888754
No 31
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.31 E-value=1.3e-11 Score=91.96 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=67.1
Q ss_pred hHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEe
Q psy14385 138 TYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQS 209 (228)
Q Consensus 138 df~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~ 209 (228)
+|.+.|.++ .+.+|||+| |++|+.+.+.|.+++..|+ .+.|++||++.. ...|++.++||+++|++|+.+.
T Consensus 2 ~f~~~i~~~-~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 2 NFQQVLQES-TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred ChHHHHHhc-CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEee
Confidence 577778655 346888888 9999999999999999996 478999999985 4789999999999999999999
Q ss_pred EEeCcc
Q psy14385 210 QMVGPD 215 (228)
Q Consensus 210 ~lvG~~ 215 (228)
.+.|..
T Consensus 81 ~~~g~~ 86 (96)
T cd02956 81 GFQGAQ 86 (96)
T ss_pred eecCCC
Confidence 999865
No 32
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.27 E-value=2.5e-11 Score=90.76 Aligned_cols=82 Identities=23% Similarity=0.435 Sum_probs=70.8
Q ss_pred eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC----CcEEEEEeCCCC---CCCCCCCCCcEE
Q psy14385 131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP----TTKFIKSISTTC---IPNYPDKNLPTL 199 (228)
Q Consensus 131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~~---~~~y~v~~LPTl 199 (228)
+++++.++|...+.+ + +|+|+| |++|+.+.+.|.++|.++. .++|+++|.+.. ...|++.++||+
T Consensus 2 ~~~l~~~~f~~~~~~-~---~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 77 (102)
T cd03005 2 VLELTEDNFDHHIAE-G---NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTL 77 (102)
T ss_pred eeECCHHHHHHHhhc-C---CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEE
Confidence 678899999988853 2 377777 9999999999999999984 589999998863 478999999999
Q ss_pred EEEECCEEEeEEeCccc
Q psy14385 200 FIYFEGKMQSQMVGPDE 216 (228)
Q Consensus 200 lvYk~G~~v~~lvG~~~ 216 (228)
++|++|..+.++.|...
T Consensus 78 ~~~~~g~~~~~~~G~~~ 94 (102)
T cd03005 78 LLFKDGEKVDKYKGTRD 94 (102)
T ss_pred EEEeCCCeeeEeeCCCC
Confidence 99999999999999764
No 33
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.25 E-value=2.6e-11 Score=92.81 Aligned_cols=77 Identities=13% Similarity=0.291 Sum_probs=65.1
Q ss_pred hHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCC-CC---CCCCCCCCCcEEEEEECCEEEe
Q psy14385 138 TYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSIST-TC---IPNYPDKNLPTLFIYFEGKMQS 209 (228)
Q Consensus 138 df~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad-~~---~~~y~v~~LPTllvYk~G~~v~ 209 (228)
.+++-+.. .++.+|||+| |++|+.|.+.|+++|++|+++.|++||.+ .. ...|++.++||+++|++| .+.
T Consensus 8 ~~~~~~~~-~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~ 85 (100)
T cd02999 8 IALDLMAF-NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRV 85 (100)
T ss_pred HHHHHHHh-cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-cee
Confidence 34444443 3578899999 99999999999999999999999999987 42 478999999999999999 888
Q ss_pred EEeCccc
Q psy14385 210 QMVGPDE 216 (228)
Q Consensus 210 ~lvG~~~ 216 (228)
++.|...
T Consensus 86 ~~~G~~~ 92 (100)
T cd02999 86 RYNGTRT 92 (100)
T ss_pred EecCCCC
Confidence 8888643
No 34
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.23 E-value=8e-11 Score=93.69 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=64.4
Q ss_pred eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC-----CC---------CCC-
Q psy14385 131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT-----CI---------PNY- 191 (228)
Q Consensus 131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~-----~~---------~~y- 191 (228)
+.+|+.++|.+.+.+. ..+||.| ||+|+.|.|.|.+++.+ .+.+|+.+|++. .+ ..|
T Consensus 8 ~~~it~~~~~~~i~~~---~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 8 LEVTTVVRALEALDKK---ETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred ceecCHHHHHHHHHcC---CcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 5678999999988654 3577777 99999999999999999 446788888773 11 234
Q ss_pred ---CCCCCcEEEEEECCEEEeEEeCc
Q psy14385 192 ---PDKNLPTLFIYFEGKMQSQMVGP 214 (228)
Q Consensus 192 ---~v~~LPTllvYk~G~~v~~lvG~ 214 (228)
++.++|||++|++|+.+++++|.
T Consensus 84 i~~~i~~~PT~v~~k~Gk~v~~~~G~ 109 (122)
T TIGR01295 84 IPTSFMGTPTFVHITDGKQVSVRCGS 109 (122)
T ss_pred CcccCCCCCEEEEEeCCeEEEEEeCC
Confidence 56669999999999999999994
No 35
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.22 E-value=5.9e-11 Score=90.80 Aligned_cols=83 Identities=18% Similarity=0.302 Sum_probs=68.7
Q ss_pred ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC----C---CcEEEEEeCCCC---CCCCCCCC
Q psy14385 130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF----P---TTKFIKSISTTC---IPNYPDKN 195 (228)
Q Consensus 130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky----p---~~KFvkI~ad~~---~~~y~v~~ 195 (228)
.|.+++.++|.+.+. .+ .+|+|+| |++|+.+.+.|+++|.++ + .++|+++|++.. ..+|++.+
T Consensus 2 ~v~~l~~~~f~~~i~-~~--~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~ 78 (108)
T cd02996 2 EIVSLTSGNIDDILQ-SA--ELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINK 78 (108)
T ss_pred ceEEcCHhhHHHHHh-cC--CEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCc
Confidence 578899999998774 32 5788888 999999999999999874 3 389999999874 47899999
Q ss_pred CcEEEEEECCEE-EeEEeCcc
Q psy14385 196 LPTLFIYFEGKM-QSQMVGPD 215 (228)
Q Consensus 196 LPTllvYk~G~~-v~~lvG~~ 215 (228)
+||+++|++|+. ...+.|..
T Consensus 79 ~Ptl~~~~~g~~~~~~~~g~~ 99 (108)
T cd02996 79 YPTLKLFRNGMMMKREYRGQR 99 (108)
T ss_pred CCEEEEEeCCcCcceecCCCC
Confidence 999999999994 46666644
No 36
>PRK10996 thioredoxin 2; Provisional
Probab=99.22 E-value=8.6e-11 Score=95.04 Aligned_cols=85 Identities=20% Similarity=0.390 Sum_probs=72.9
Q ss_pred CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385 129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLF 200 (228)
Q Consensus 129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTll 200 (228)
|.+.+++..+|.+.+. . +.+|+|.| |++|+.|.+.|..++.++. .+.|+++|.+.. ...|++.++||++
T Consensus 35 ~~~i~~~~~~~~~~i~-~--~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptli 111 (139)
T PRK10996 35 GEVINATGETLDKLLQ-D--DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIM 111 (139)
T ss_pred CCCEEcCHHHHHHHHh-C--CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEE
Confidence 4567788888887664 3 35788888 9999999999999999985 699999999874 4789999999999
Q ss_pred EEECCEEEeEEeCccc
Q psy14385 201 IYFEGKMQSQMVGPDE 216 (228)
Q Consensus 201 vYk~G~~v~~lvG~~~ 216 (228)
+|++|+.+..+.|...
T Consensus 112 i~~~G~~v~~~~G~~~ 127 (139)
T PRK10996 112 IFKNGQVVDMLNGAVP 127 (139)
T ss_pred EEECCEEEEEEcCCCC
Confidence 9999999999999653
No 37
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.21 E-value=8.9e-11 Score=86.67 Aligned_cols=80 Identities=24% Similarity=0.426 Sum_probs=69.0
Q ss_pred eChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEEECC
Q psy14385 134 INGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIYFEG 205 (228)
Q Consensus 134 Is~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G 205 (228)
|+.++|...+.+.+ ..|+|+| |+.|+.+.+.|+.++++++ .++|+++|.+.. ...|++.++||+++|++|
T Consensus 1 i~~~~~~~~~~~~~--~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 1 LTDANFDETIASSD--KPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred CCHHHHHHHHhhcC--CcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence 46678888887543 5788888 9999999999999999997 599999998874 478999999999999999
Q ss_pred EEEeEEeCcc
Q psy14385 206 KMQSQMVGPD 215 (228)
Q Consensus 206 ~~v~~lvG~~ 215 (228)
+.+..+.|..
T Consensus 79 ~~~~~~~g~~ 88 (101)
T TIGR01068 79 KEVDRSVGAL 88 (101)
T ss_pred cEeeeecCCC
Confidence 9999888865
No 38
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.13 E-value=2.4e-10 Score=89.37 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=62.1
Q ss_pred hhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEe
Q psy14385 137 DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQS 209 (228)
Q Consensus 137 edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~ 209 (228)
++|.+.+.+ +..|||+| |++|+.|.+.|+++|.+++.++|+++|.++. ...|+++++||+++|++|...+
T Consensus 13 ~~~~~~l~~---~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~ 89 (113)
T cd02975 13 EEFFKEMKN---PVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDG 89 (113)
T ss_pred HHHHHHhCC---CeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecc
Confidence 346666643 24678887 9999999999999999999999999999974 5889999999999999987665
Q ss_pred --EEeCc
Q psy14385 210 --QMVGP 214 (228)
Q Consensus 210 --~lvG~ 214 (228)
.+.|.
T Consensus 90 ~~~~~G~ 96 (113)
T cd02975 90 GIRYYGL 96 (113)
T ss_pred eEEEEec
Confidence 56664
No 39
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.12 E-value=3.1e-10 Score=84.71 Aligned_cols=82 Identities=20% Similarity=0.277 Sum_probs=68.0
Q ss_pred eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC---cEEEEEeCCC--CCCCCCCCCCcEEEE
Q psy14385 131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT---TKFIKSISTT--CIPNYPDKNLPTLFI 201 (228)
Q Consensus 131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~---~KFvkI~ad~--~~~~y~v~~LPTllv 201 (228)
|..++.++|.+.+.+.+ ..|+|+| |++|+.|.+.|.++|+.+.+ +.|+++|.+. +...+.+.++||+++
T Consensus 2 v~~l~~~~f~~~i~~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 2 VKVVVGKNFDEVVLDSD--KDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILF 79 (104)
T ss_pred eEEEchhhhHHHHhCCC--CcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEE
Confidence 67889999988887654 4677777 99999999999999999854 8999999876 456788899999999
Q ss_pred EECCE--EEeEEeCc
Q psy14385 202 YFEGK--MQSQMVGP 214 (228)
Q Consensus 202 Yk~G~--~v~~lvG~ 214 (228)
|++|. ....+.|.
T Consensus 80 ~~~~~~~~~~~~~g~ 94 (104)
T cd02995 80 FPAGDKSNPIKYEGD 94 (104)
T ss_pred EcCCCcCCceEccCC
Confidence 99998 45555554
No 40
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.10 E-value=5.8e-10 Score=83.38 Aligned_cols=83 Identities=16% Similarity=0.283 Sum_probs=69.8
Q ss_pred ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCC--C---CCCCCCCCCc
Q psy14385 130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTT--C---IPNYPDKNLP 197 (228)
Q Consensus 130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~--~---~~~y~v~~LP 197 (228)
.|.+++..+|...+.+. .+++|+| |++|+.+.+.+..+++++. .+.|+++|++. . ...|++.++|
T Consensus 1 ~~~~l~~~~~~~~~~~~---~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P 77 (104)
T cd02997 1 DVVHLTDEDFRKFLKKE---KHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFP 77 (104)
T ss_pred CeEEechHhHHHHHhhC---CCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcccc
Confidence 36788888998887643 3677777 9999999999999999875 47899999886 3 3689999999
Q ss_pred EEEEEECCEEEeEEeCcc
Q psy14385 198 TLFIYFEGKMQSQMVGPD 215 (228)
Q Consensus 198 TllvYk~G~~v~~lvG~~ 215 (228)
|+++|++|+.+..+.|..
T Consensus 78 t~~~~~~g~~~~~~~g~~ 95 (104)
T cd02997 78 TFKYFENGKFVEKYEGER 95 (104)
T ss_pred EEEEEeCCCeeEEeCCCC
Confidence 999999999998888854
No 41
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.10 E-value=2.6e-10 Score=86.43 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=64.7
Q ss_pred eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC--C---CCCCCCCCCcEEE
Q psy14385 131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTT--C---IPNYPDKNLPTLF 200 (228)
Q Consensus 131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~--~---~~~y~v~~LPTll 200 (228)
|++++.++|...|.+.+ .+|+|+| |++|+.+.+.|.++|+++. .+.|+.++.+. . ...|++.++||++
T Consensus 2 v~~l~~~~~~~~i~~~~--~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTN--YTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCC--CeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 67899999999987653 5788888 9999999999999999986 47899999886 2 4689999999999
Q ss_pred EEECCE
Q psy14385 201 IYFEGK 206 (228)
Q Consensus 201 vYk~G~ 206 (228)
+|++|.
T Consensus 80 ~~~~~~ 85 (109)
T cd03002 80 VFRPPK 85 (109)
T ss_pred EEeCCC
Confidence 999997
No 42
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.09 E-value=4.4e-10 Score=84.54 Aligned_cols=80 Identities=20% Similarity=0.318 Sum_probs=66.2
Q ss_pred ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC---CCCCCCCCCcEEE
Q psy14385 130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC---IPNYPDKNLPTLF 200 (228)
Q Consensus 130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~---~~~y~v~~LPTll 200 (228)
.|.+++.++|.+.+ + + . ++|+| |++|+.+.+.|+++|..+. .+.|.++|++.. ..+|.+.++||++
T Consensus 2 ~v~~l~~~~f~~~~-~-~--~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 2 NVVELTDSNWTLVL-E-G--E-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIY 76 (101)
T ss_pred ceEEcChhhHHHHh-C-C--C-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEE
Confidence 47889999998755 2 2 3 45766 9999999999999999874 589999998874 4789999999999
Q ss_pred EEECCEEEeEEeCcc
Q psy14385 201 IYFEGKMQSQMVGPD 215 (228)
Q Consensus 201 vYk~G~~v~~lvG~~ 215 (228)
+|++|+. ..+.|..
T Consensus 77 ~~~~g~~-~~~~G~~ 90 (101)
T cd02994 77 HAKDGVF-RRYQGPR 90 (101)
T ss_pred EeCCCCE-EEecCCC
Confidence 9999984 7777754
No 43
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.08 E-value=7.7e-10 Score=83.31 Aligned_cols=74 Identities=9% Similarity=0.185 Sum_probs=64.1
Q ss_pred HHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEeEEe
Q psy14385 141 QEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQSQMV 212 (228)
Q Consensus 141 ~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~~lv 212 (228)
.++.+++ .+|++.| |+.|+.+.+.++.++++++ ++.|+++|.+.. ...|.+.++||+++|++|+.+.++.
T Consensus 7 ~~~~~~~--~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~ 84 (97)
T cd02949 7 KLYHESD--RLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEIS 84 (97)
T ss_pred HHHHhCC--CeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEe
Confidence 4555543 5788888 9999999999999999996 589999999864 4789999999999999999999999
Q ss_pred Cccc
Q psy14385 213 GPDE 216 (228)
Q Consensus 213 G~~~ 216 (228)
|...
T Consensus 85 g~~~ 88 (97)
T cd02949 85 GVKM 88 (97)
T ss_pred CCcc
Confidence 9764
No 44
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.04 E-value=1.2e-09 Score=81.75 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=67.4
Q ss_pred eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEE
Q psy14385 131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIY 202 (228)
Q Consensus 131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvY 202 (228)
|.+++.++|.+.+.+.. .+|+|.| |++|+.+.+.|..+|++++ .+.|+++|.+.. ..+|+++++||+++|
T Consensus 2 v~~l~~~~~~~~i~~~~--~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTDSNFDKKVLNSD--DVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCHHhHHHHHhcCC--CcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 67889999999887553 5677777 9999999999999999985 589999999874 478999999999999
Q ss_pred ECC-EEEeEEeC
Q psy14385 203 FEG-KMQSQMVG 213 (228)
Q Consensus 203 k~G-~~v~~lvG 213 (228)
++| .....+.|
T Consensus 80 ~~~~~~~~~~~g 91 (103)
T cd03001 80 GAGKNSPQDYQG 91 (103)
T ss_pred CCCCcceeecCC
Confidence 999 44444544
No 45
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.03 E-value=1e-09 Score=84.60 Aligned_cols=84 Identities=14% Similarity=0.215 Sum_probs=66.4
Q ss_pred ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC-C---C-CCCCCCCCcE
Q psy14385 130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTT-C---I-PNYPDKNLPT 198 (228)
Q Consensus 130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~-~---~-~~y~v~~LPT 198 (228)
.|.+++.++|...+.....+.+|+|+| |++|+.|.+.|.++|++|. ++.|++|+++. . + ..|++..+||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 478899999987775333346788888 9999999999999999996 48899999875 2 2 3599999999
Q ss_pred EEEEECCE-EEeEEeC
Q psy14385 199 LFIYFEGK-MQSQMVG 213 (228)
Q Consensus 199 llvYk~G~-~v~~lvG 213 (228)
+++|.+|. ....+.|
T Consensus 82 i~~f~~~~~~~~~y~g 97 (109)
T cd02993 82 ILFFPKNSRQPIKYPS 97 (109)
T ss_pred EEEEcCCCCCceeccC
Confidence 99998874 3444444
No 46
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.03 E-value=2.4e-09 Score=76.40 Aligned_cols=76 Identities=29% Similarity=0.497 Sum_probs=65.7
Q ss_pred hHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC---CCCCCCCCCCcEEEEEECCEEEeE
Q psy14385 138 TYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT---CIPNYPDKNLPTLFIYFEGKMQSQ 210 (228)
Q Consensus 138 df~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~---~~~~y~v~~LPTllvYk~G~~v~~ 210 (228)
+|...+... .+++|+| |+.|+.+.+.|..++.+++++.|+.++.+. ....|++.++||+++|++|+.+..
T Consensus 2 ~~~~~~~~~---~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~ 78 (93)
T cd02947 2 EFEELIKSA---KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDR 78 (93)
T ss_pred chHHHHhcC---CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEE
Confidence 466666644 4677777 999999999999999999999999999887 357899999999999999999999
Q ss_pred EeCccc
Q psy14385 211 MVGPDE 216 (228)
Q Consensus 211 lvG~~~ 216 (228)
+.|...
T Consensus 79 ~~g~~~ 84 (93)
T cd02947 79 VVGADP 84 (93)
T ss_pred EecCCC
Confidence 998754
No 47
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.02 E-value=1.2e-09 Score=87.22 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=60.2
Q ss_pred ChhhHHHHHHhcCCCceEEEEe-----------ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC----------CCCCCC
Q psy14385 135 NGDTYVQEVNNAGEGIWVVLHF-----------IPLCSLINNHLSELAAKFP-TTKFIKSISTT----------CIPNYP 192 (228)
Q Consensus 135 s~edf~~eV~~a~~~~~VVVhf-----------~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~----------~~~~y~ 192 (228)
+.++|.+.|... ++.+|||+| |++|+.|.+.|++++.+|+ .++|++|++++ ....|.
T Consensus 8 ~~~~f~~~i~~~-~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 8 GYEEFLKLLKSH-EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred CHHHHHHHHHhc-CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC
Confidence 457888888754 346888888 9999999999999999999 79999999974 236788
Q ss_pred CC-CCcEEEEEECCE
Q psy14385 193 DK-NLPTLFIYFEGK 206 (228)
Q Consensus 193 v~-~LPTllvYk~G~ 206 (228)
+. ++||+++|++|.
T Consensus 87 I~~~iPT~~~~~~~~ 101 (119)
T cd02952 87 LTTGVPTLLRWKTPQ 101 (119)
T ss_pred cccCCCEEEEEcCCc
Confidence 88 999999998885
No 48
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.99 E-value=1.4e-09 Score=85.03 Aligned_cols=87 Identities=10% Similarity=0.120 Sum_probs=70.8
Q ss_pred CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC----CcEEEEEeCCC-----CCCCCCCCC
Q psy14385 129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP----TTKFIKSISTT-----CIPNYPDKN 195 (228)
Q Consensus 129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~-----~~~~y~v~~ 195 (228)
+.|++++.++|...|.++. .+|||+| |++|+.|.+.|+++|.+|. .++|.++|.+. ....|+++.
T Consensus 1 ~~v~~l~~~~f~~~i~~~~--~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~ 78 (114)
T cd02992 1 DPVIVLDAASFNSALLGSP--SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG 78 (114)
T ss_pred CCeEECCHHhHHHHHhcCC--CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC
Confidence 4578999999999998664 5788888 9999999999999999764 38999998642 247899999
Q ss_pred CcEEEEEECCEEEeEEeCccccC
Q psy14385 196 LPTLFIYFEGKMQSQMVGPDEFR 218 (228)
Q Consensus 196 LPTllvYk~G~~v~~lvG~~~~G 218 (228)
+||+++|++|. .....|..--|
T Consensus 79 ~Pt~~lf~~~~-~~~~~~~~~~~ 100 (114)
T cd02992 79 YPTLRYFPPFS-KEATDGLKQEG 100 (114)
T ss_pred CCEEEEECCCC-ccCCCCCcccC
Confidence 99999999998 55555655444
No 49
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.99 E-value=1.3e-09 Score=79.43 Aligned_cols=80 Identities=21% Similarity=0.354 Sum_probs=67.7
Q ss_pred EeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC---CCcEEEEEeCCC---CCCCCCCCCCcEEEEE
Q psy14385 133 EINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF---PTTKFIKSISTT---CIPNYPDKNLPTLFIY 202 (228)
Q Consensus 133 eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky---p~~KFvkI~ad~---~~~~y~v~~LPTllvY 202 (228)
+++..+|.+.+.+.. +++|+| |++|+.+.+.+..+|+.+ ..++|+.++.+. ....|++.++||+++|
T Consensus 2 ~l~~~~~~~~i~~~~---~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02961 2 ELTDDNFDELVKDSK---DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLF 78 (101)
T ss_pred cccHHHHHHHHhCCC---cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEE
Confidence 577889998887552 677777 999999999999999999 679999999886 3588999999999999
Q ss_pred ECC-EEEeEEeCcc
Q psy14385 203 FEG-KMQSQMVGPD 215 (228)
Q Consensus 203 k~G-~~v~~lvG~~ 215 (228)
++| ....++.|..
T Consensus 79 ~~~~~~~~~~~g~~ 92 (101)
T cd02961 79 PNGSKEPVKYEGPR 92 (101)
T ss_pred cCCCcccccCCCCc
Confidence 998 6777776654
No 50
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.98 E-value=1.5e-09 Score=88.23 Aligned_cols=77 Identities=17% Similarity=0.312 Sum_probs=63.3
Q ss_pred hhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC-----CCCCCCCCCcEEEEE-ECC
Q psy14385 137 DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC-----IPNYPDKNLPTLFIY-FEG 205 (228)
Q Consensus 137 edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~-----~~~y~v~~LPTllvY-k~G 205 (228)
.+|...+. . +.+|||+| |++|+.|.+.|.+++.+|. .+.|+.|+++.. +..|.+.++||+++| ++|
T Consensus 11 ~~~~~a~~-~--gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 11 TPPEVALS-N--GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred CCHHHHHh-C--CCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 34444443 3 36888888 9999999999999999996 478999888752 478999999999999 589
Q ss_pred EEEeEEeCccc
Q psy14385 206 KMQSQMVGPDE 216 (228)
Q Consensus 206 ~~v~~lvG~~~ 216 (228)
+++.+++|...
T Consensus 88 ~~v~~~~G~~~ 98 (142)
T cd02950 88 NEEGQSIGLQP 98 (142)
T ss_pred CEEEEEeCCCC
Confidence 99999999763
No 51
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.95 E-value=2.6e-09 Score=79.67 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=66.3
Q ss_pred eEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCC-C---CCCCCCCCCcEE
Q psy14385 131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTT-C---IPNYPDKNLPTL 199 (228)
Q Consensus 131 V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~-~---~~~y~v~~LPTl 199 (228)
|.+++.++|...+.+. +.+|||+| |++|+.+.+.+..+++++. .+.|+++|.+. . ...|++.++||+
T Consensus 2 ~~~l~~~~~~~~~~~~--~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~ 79 (105)
T cd02998 2 VVELTDSNFDKVVGDD--KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTL 79 (105)
T ss_pred eEEcchhcHHHHhcCC--CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEE
Confidence 5788889998877544 35788888 9999999999999999985 58999999877 4 478999999999
Q ss_pred EEEECCE-EEeEEeC
Q psy14385 200 FIYFEGK-MQSQMVG 213 (228)
Q Consensus 200 lvYk~G~-~v~~lvG 213 (228)
++|++|. ....+.|
T Consensus 80 ~~~~~~~~~~~~~~g 94 (105)
T cd02998 80 KFFPKGSTEPVKYEG 94 (105)
T ss_pred EEEeCCCCCccccCC
Confidence 9999983 4444444
No 52
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.91 E-value=6.7e-09 Score=84.41 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=60.5
Q ss_pred eEEEEe------ccchHHHHHHHHHHHHhCC-C-cEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEeEEeCcccc
Q psy14385 151 WVVLHF------IPLCSLINNHLSELAAKFP-T-TKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQSQMVGPDEF 217 (228)
Q Consensus 151 ~VVVhf------~~~C~~l~~~L~~LA~kyp-~-~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~~lvG~~~~ 217 (228)
..|++| ++.+.-+.-+|.+||++|+ . ++|++||++.. +..|+++++|||++||||+.+++++|....
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k 113 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPW 113 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEEEEeCcCCH
Confidence 467777 8999999999999999998 3 89999999985 589999999999999999999999998754
No 53
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.89 E-value=9.2e-09 Score=90.25 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=72.0
Q ss_pred CceEEeChhhHHHHHHhcC--CCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcE
Q psy14385 129 GRVLEINGDTYVQEVNNAG--EGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPT 198 (228)
Q Consensus 129 G~V~eIs~edf~~eV~~a~--~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPT 198 (228)
..|.+++.++|.+.+.... .+.+++|.| |++|+.+.+.++++|++|.+ +.|.++|++.. ..+|++.++||
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT 109 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence 3588999999998775431 124667777 99999999999999999975 88999998874 47899999999
Q ss_pred EEEEECCEEEeEEeCcc
Q psy14385 199 LFIYFEGKMQSQMVGPD 215 (228)
Q Consensus 199 llvYk~G~~v~~lvG~~ 215 (228)
+++|++|+.+....|..
T Consensus 110 l~~f~~G~~v~~~~G~~ 126 (224)
T PTZ00443 110 LLLFDKGKMYQYEGGDR 126 (224)
T ss_pred EEEEECCEEEEeeCCCC
Confidence 99999999988777743
No 54
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.88 E-value=5.3e-09 Score=77.54 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=66.1
Q ss_pred eChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCCC---CCCCCCCCCcEEEEEE
Q psy14385 134 INGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTTC---IPNYPDKNLPTLFIYF 203 (228)
Q Consensus 134 Is~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~~---~~~y~v~~LPTllvYk 203 (228)
++.++|...+. . +.++||+| |+.|+.+.+.|+.+|..+. .+.|+++|.+.. ...|++..+||+++|+
T Consensus 1 l~~~~~~~~~~-~--~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~ 77 (102)
T TIGR01126 1 LTASNFDDIVL-S--NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFP 77 (102)
T ss_pred CchhhHHHHhc-c--CCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEec
Confidence 35677887775 3 35778888 9999999999999999987 499999999874 4789999999999999
Q ss_pred CCEEEeEEeCcc
Q psy14385 204 EGKMQSQMVGPD 215 (228)
Q Consensus 204 ~G~~v~~lvG~~ 215 (228)
+|..+..+.|..
T Consensus 78 ~~~~~~~~~g~~ 89 (102)
T TIGR01126 78 KGKKPVDYEGGR 89 (102)
T ss_pred CCCcceeecCCC
Confidence 998777777753
No 55
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.87 E-value=4.2e-09 Score=79.83 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=62.8
Q ss_pred hhHHHHHHhcCCCceEEEEe----ccchHHHHHHH---HHHHHhCC-CcEEEEEeCCCC-------CCCCCCCCCcEEEE
Q psy14385 137 DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHL---SELAAKFP-TTKFIKSISTTC-------IPNYPDKNLPTLFI 201 (228)
Q Consensus 137 edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L---~~LA~kyp-~~KFvkI~ad~~-------~~~y~v~~LPTllv 201 (228)
++|.+.+. . +.+|+|.| |++|+.|.+.+ .+++..+. ++.|++||.+.. ..+|++.++||+++
T Consensus 2 ~~~~~~~~-~--~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQALA-Q--GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHH-c--CCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 35566554 3 25888888 99999999988 68888887 789999998752 36899999999999
Q ss_pred EE--CCEEEeEEeCccc
Q psy14385 202 YF--EGKMQSQMVGPDE 216 (228)
Q Consensus 202 Yk--~G~~v~~lvG~~~ 216 (228)
|+ +|+.+.++.|...
T Consensus 79 ~~~~~g~~~~~~~G~~~ 95 (104)
T cd02953 79 YGPGGEPEPLRLPGFLT 95 (104)
T ss_pred ECCCCCCCCcccccccC
Confidence 99 8999999988753
No 56
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.85 E-value=8.3e-09 Score=78.48 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=53.9
Q ss_pred ceEEEEe----ccchHHHHHHHHHHHHhCC----CcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385 150 IWVVLHF----IPLCSLINNHLSELAAKFP----TTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQSQMVGPD 215 (228)
Q Consensus 150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~~lvG~~ 215 (228)
..|+|+| |++|+.+.+.|+++|++|. .+.|.+++++.. ...|++.++||+++|++|. +..+.|..
T Consensus 16 ~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~-~~~~~G~~ 91 (104)
T cd03000 16 DIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL-AYNYRGPR 91 (104)
T ss_pred CeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-ceeecCCC
Confidence 4788888 9999999999999999973 488999998763 4789999999999998884 45566643
No 57
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.84 E-value=9.9e-09 Score=98.53 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=65.5
Q ss_pred CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCCCC-----CCCCCCCCCc
Q psy14385 129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSISTTC-----IPNYPDKNLP 197 (228)
Q Consensus 129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad~~-----~~~y~v~~LP 197 (228)
..|.+++.++|...|.....+.+|||+| |++|+.|.+.|+++|.+|.+ ++|++|+++.. ...|.+.++|
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P 430 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 430 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence 4688999999999885222346888888 99999999999999999963 89999988742 2579999999
Q ss_pred EEEEEECCE
Q psy14385 198 TLFIYFEGK 206 (228)
Q Consensus 198 TllvYk~G~ 206 (228)
||++|++|.
T Consensus 431 Tii~Fk~g~ 439 (463)
T TIGR00424 431 TILFFPKHS 439 (463)
T ss_pred eEEEEECCC
Confidence 999999996
No 58
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.79 E-value=1.7e-08 Score=87.00 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=59.8
Q ss_pred hhHHHHHHhcCCCceEEEEe------ccchHHHHHHHHHHHHhCCCcE--EEEEeCCCC---CCCCCCCCCcEEEEEECC
Q psy14385 137 DTYVQEVNNAGEGIWVVLHF------IPLCSLINNHLSELAAKFPTTK--FIKSISTTC---IPNYPDKNLPTLFIYFEG 205 (228)
Q Consensus 137 edf~~eV~~a~~~~~VVVhf------~~~C~~l~~~L~~LA~kyp~~K--FvkI~ad~~---~~~y~v~~LPTllvYk~G 205 (228)
+.|+..+. + +..+++++ |++|+.|.+.|+++|.+|++++ |+++|+++. +..|++.++||+++|++|
T Consensus 11 ~~~~~~~~-~--~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g 87 (215)
T TIGR02187 11 ELFLKELK-N--PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEG 87 (215)
T ss_pred HHHHHhcC-C--CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCC
Confidence 44565553 2 24555655 8999999999999999998755 667766553 589999999999999999
Q ss_pred EEEe-EEeCcc
Q psy14385 206 KMQS-QMVGPD 215 (228)
Q Consensus 206 ~~v~-~lvG~~ 215 (228)
+.+. +++|..
T Consensus 88 ~~~~~~~~G~~ 98 (215)
T TIGR02187 88 KDGGIRYTGIP 98 (215)
T ss_pred eeeEEEEeecC
Confidence 9985 899964
No 59
>PLN02309 5'-adenylylsulfate reductase
Probab=98.73 E-value=3.7e-08 Score=94.54 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=66.3
Q ss_pred CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCC-C---CC-CCCCCCCC
Q psy14385 128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIST-T---CI-PNYPDKNL 196 (228)
Q Consensus 128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad-~---~~-~~y~v~~L 196 (228)
.+.|.+++.++|.+.+.....+.+|||+| |++|+.|.+.|++||.+|. +++|+++|++ . .+ ..|.+.++
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~ 423 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 423 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCcee
Confidence 35789999999988775333346788888 9999999999999999985 4999999998 3 23 46999999
Q ss_pred cEEEEEECCEE
Q psy14385 197 PTLFIYFEGKM 207 (228)
Q Consensus 197 PTllvYk~G~~ 207 (228)
|||++|++|..
T Consensus 424 PTil~f~~g~~ 434 (457)
T PLN02309 424 PTILLFPKNSS 434 (457)
T ss_pred eEEEEEeCCCC
Confidence 99999999863
No 60
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.68 E-value=4.6e-08 Score=90.83 Aligned_cols=107 Identities=18% Similarity=0.247 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHh--ccCCCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC---
Q psy14385 106 RVLQEYRRKRIAEMKAMAE--KSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT--- 176 (228)
Q Consensus 106 ~~Le~yR~kRl~ELk~~~~--~~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--- 176 (228)
+|++.++.-+++...+... ....|.|..++..+|.+.|.+.+ ..|+|.| |++|+.|.+.++.+|..|.+
T Consensus 321 ~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~--~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~ 398 (462)
T TIGR01130 321 AFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDET--KDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAES 398 (462)
T ss_pred HHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCC--CeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCC
Confidence 4566665555543322211 11357788999999999887553 5778877 99999999999999999964
Q ss_pred -cEEEEEeCCCC-CCCCCCCCCcEEEEEECCEEE--eEEeCc
Q psy14385 177 -TKFIKSISTTC-IPNYPDKNLPTLFIYFEGKMQ--SQMVGP 214 (228)
Q Consensus 177 -~KFvkI~ad~~-~~~y~v~~LPTllvYk~G~~v--~~lvG~ 214 (228)
++|+++|++.. ...|.++++||+++|++|..+ ..+.|.
T Consensus 399 ~i~~~~id~~~n~~~~~~i~~~Pt~~~~~~~~~~~~~~~~g~ 440 (462)
T TIGR01130 399 DVVIAKMDATANDVPPFEVEGFPTIKFVPAGKKSEPVPYDGD 440 (462)
T ss_pred cEEEEEEECCCCccCCCCccccCEEEEEeCCCCcCceEecCc
Confidence 78999998763 233999999999999999764 345553
No 61
>PTZ00102 disulphide isomerase; Provisional
Probab=98.66 E-value=1e-07 Score=89.73 Aligned_cols=86 Identities=20% Similarity=0.256 Sum_probs=72.4
Q ss_pred CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCCC---CCCCCCCCCc
Q psy14385 128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTTC---IPNYPDKNLP 197 (228)
Q Consensus 128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~~---~~~y~v~~LP 197 (228)
-+.|..++.++|...|.+.+ ..|+|.| |++|+.|.+.|+++|..+. .+.|+++|++.. +..|.++++|
T Consensus 356 ~~~v~~l~~~~f~~~v~~~~--k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~P 433 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKSD--KDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFP 433 (477)
T ss_pred CCCeEEecccchHHHHhcCC--CCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccC
Confidence 45688899999999987664 5788888 9999999999999999985 488999998864 4689999999
Q ss_pred EEEEEECCEEE-eEEeCcc
Q psy14385 198 TLFIYFEGKMQ-SQMVGPD 215 (228)
Q Consensus 198 TllvYk~G~~v-~~lvG~~ 215 (228)
|+++|++|..+ ..+.|..
T Consensus 434 t~~~~~~~~~~~~~~~G~~ 452 (477)
T PTZ00102 434 TILFVKAGERTPIPYEGER 452 (477)
T ss_pred eEEEEECCCcceeEecCcC
Confidence 99999998765 3677754
No 62
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.55 E-value=1.7e-07 Score=73.88 Aligned_cols=69 Identities=10% Similarity=0.206 Sum_probs=55.1
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhC-CCcEEEEEeCCCC----CCCCCCCC--CcEEEEEE-CCEEEeEEeCccc
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKF-PTTKFIKSISTTC----IPNYPDKN--LPTLFIYF-EGKMQSQMVGPDE 216 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~ky-p~~KFvkI~ad~~----~~~y~v~~--LPTllvYk-~G~~v~~lvG~~~ 216 (228)
+++|+|+| |++|+.|.+.+.+++..+ ....|+.++.+.. ...|.+.+ +||+++|. +|+++.++++...
T Consensus 19 ~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~~~~ 98 (117)
T cd02959 19 GKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIINKKG 98 (117)
T ss_pred CCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhccCCC
Confidence 46899999 999999999999988765 3467887777643 26677875 99999995 9999997776654
Q ss_pred c
Q psy14385 217 F 217 (228)
Q Consensus 217 ~ 217 (228)
.
T Consensus 99 ~ 99 (117)
T cd02959 99 N 99 (117)
T ss_pred C
Confidence 3
No 63
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.53 E-value=1.1e-07 Score=71.25 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=52.5
Q ss_pred ceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCC--CCcEEEEEEC--CEEEeE
Q psy14385 150 IWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDK--NLPTLFIYFE--GKMQSQ 210 (228)
Q Consensus 150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~--~LPTllvYk~--G~~v~~ 210 (228)
.++++.| |++|..+.+.|+++|++|. .++|+.||+++. ...|++. ++||+++|++ |.....
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~ 85 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLM 85 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCC
Confidence 4677777 9999999999999999995 599999999983 5789999 9999999999 655443
No 64
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.53 E-value=2.9e-07 Score=85.47 Aligned_cols=83 Identities=24% Similarity=0.375 Sum_probs=70.1
Q ss_pred ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC----CCcEEEEEeCCCC---CCCCCCCCCcE
Q psy14385 130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF----PTTKFIKSISTTC---IPNYPDKNLPT 198 (228)
Q Consensus 130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky----p~~KFvkI~ad~~---~~~y~v~~LPT 198 (228)
.|..++.++|...+.+. .+++|+| |++|+.+.+.+.++|..+ +.+.|++||++.. ...|++.+.||
T Consensus 2 ~v~~l~~~~~~~~i~~~---~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 78 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSH---EFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPT 78 (462)
T ss_pred CceECCHHHHHHHHhcC---CCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccE
Confidence 46788999998888643 4678888 999999999999998875 4589999999874 57899999999
Q ss_pred EEEEECCEE-EeEEeCcc
Q psy14385 199 LFIYFEGKM-QSQMVGPD 215 (228)
Q Consensus 199 llvYk~G~~-v~~lvG~~ 215 (228)
+++|++|.. +..+.|..
T Consensus 79 ~~~~~~g~~~~~~~~g~~ 96 (462)
T TIGR01130 79 LKIFRNGEDSVSDYNGPR 96 (462)
T ss_pred EEEEeCCccceeEecCCC
Confidence 999999998 78888854
No 65
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.48 E-value=7.4e-07 Score=76.74 Aligned_cols=56 Identities=14% Similarity=0.070 Sum_probs=50.6
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQSQMVGPD 215 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~~lvG~~ 215 (228)
|++|+.+.+.++.++.+++.++|.++|.+.. +..|++.++||+++|++|.. ++|..
T Consensus 145 C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~ 203 (215)
T TIGR02187 145 CPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAY 203 (215)
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCC
Confidence 9999999999999999999999999999874 57899999999999999974 77754
No 66
>PTZ00102 disulphide isomerase; Provisional
Probab=98.48 E-value=5.4e-07 Score=84.86 Aligned_cols=83 Identities=13% Similarity=0.203 Sum_probs=69.4
Q ss_pred CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC----CCcEEEEEeCCCC---CCCCCCCCCc
Q psy14385 129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF----PTTKFIKSISTTC---IPNYPDKNLP 197 (228)
Q Consensus 129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky----p~~KFvkI~ad~~---~~~y~v~~LP 197 (228)
..+..++..+|...+.+. ..|+|.| |++|+.+.+.+..+|..+ +.+.|+++|++.. ..+|++.+.|
T Consensus 32 ~~v~~l~~~~f~~~i~~~---~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~P 108 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITEN---EIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYP 108 (477)
T ss_pred CCcEEcchhhHHHHHhcC---CcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCccc
Confidence 357888999999888654 3677777 999999999999998664 5699999998874 4789999999
Q ss_pred EEEEEECCEEEeEEeCcc
Q psy14385 198 TLFIYFEGKMQSQMVGPD 215 (228)
Q Consensus 198 TllvYk~G~~v~~lvG~~ 215 (228)
|+++|++|..+ .+.|..
T Consensus 109 t~~~~~~g~~~-~y~g~~ 125 (477)
T PTZ00102 109 TIKFFNKGNPV-NYSGGR 125 (477)
T ss_pred EEEEEECCceE-EecCCC
Confidence 99999999987 777754
No 67
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.45 E-value=4.2e-07 Score=71.12 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=54.6
Q ss_pred ceEEEEe----ccchHHHHHHHH---HHHHhCC-CcEEEEEeCCC----------------CCCCCCCCCCcEEEEEEC-
Q psy14385 150 IWVVLHF----IPLCSLINNHLS---ELAAKFP-TTKFIKSISTT----------------CIPNYPDKNLPTLFIYFE- 204 (228)
Q Consensus 150 ~~VVVhf----~~~C~~l~~~L~---~LA~kyp-~~KFvkI~ad~----------------~~~~y~v~~LPTllvYk~- 204 (228)
.+|+|+| |++|+.|.+.+. .++..+. ++.|++|+++. ....|++.++||+++|.+
T Consensus 15 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~~ 94 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFLDPE 94 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEEcCC
Confidence 5888888 999999999874 5666663 57788998764 236799999999999997
Q ss_pred -CEEEeEEeCccc
Q psy14385 205 -GKMQSQMVGPDE 216 (228)
Q Consensus 205 -G~~v~~lvG~~~ 216 (228)
|+.+.+++|...
T Consensus 95 gg~~~~~~~G~~~ 107 (125)
T cd02951 95 GGKEIARLPGYLP 107 (125)
T ss_pred CCceeEEecCCCC
Confidence 599999999753
No 68
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.42 E-value=9.5e-07 Score=61.77 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=46.7
Q ss_pred EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEE
Q psy14385 152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQ 208 (228)
Q Consensus 152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v 208 (228)
|+++. |++|+.+.+.|++|+..++++.|..+|+++. ...|++.++||+++ +|+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 44555 9999999999999999999999999998863 57899999999866 77544
No 69
>PHA02125 thioredoxin-like protein
Probab=98.40 E-value=8.5e-07 Score=64.24 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQSQMVGPD 215 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~~lvG~~ 215 (228)
|++|+.+.+.|..++ .+|++||.+.. ...|++.++||++ +|+.++++.|+.
T Consensus 10 C~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~ 63 (75)
T PHA02125 10 CANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVP 63 (75)
T ss_pred CHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCC
Confidence 999999999998774 57899998874 4789999999998 899999999974
No 70
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.39 E-value=7.2e-07 Score=65.03 Aligned_cols=54 Identities=13% Similarity=0.292 Sum_probs=46.8
Q ss_pred ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCCCCCCCCcEEEEEECCEEEeEEeCc
Q psy14385 157 IPLCSLINNHLSELAAKFP-TTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGP 214 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~~~~y~v~~LPTllvYk~G~~v~~lvG~ 214 (228)
|++|+.+.+.+++++++++ .+.|++|+..+-+..|++.++|||++ ||+.+ +.|.
T Consensus 10 C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~a~~~~v~~vPti~i--~G~~~--~~G~ 64 (76)
T TIGR00412 10 CANCQMTEKNVKKAVEELGIDAEFEKVTDMNEILEAGVTATPGVAV--DGELV--IMGK 64 (76)
T ss_pred CcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHcCCCcCCEEEE--CCEEE--EEec
Confidence 9999999999999999997 48999998333356799999999999 99888 6674
No 71
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.39 E-value=1e-06 Score=66.52 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=47.5
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEeE
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQSQ 210 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~~ 210 (228)
|+.|+.+.+.+++|+..+|+++|..+|.++. +.+|++.++||+++ ||+.+..
T Consensus 24 C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~ 78 (89)
T cd03026 24 CHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF 78 (89)
T ss_pred CCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe
Confidence 9999999999999999999999999999875 48999999999965 9987763
No 72
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.37 E-value=1.6e-06 Score=62.27 Aligned_cols=60 Identities=17% Similarity=0.310 Sum_probs=49.4
Q ss_pred EEEEe---ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385 152 VVLHF---IPLCSLINNHLSELAAKFP-TTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQSQMVGPD 215 (228)
Q Consensus 152 VVVhf---~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~~lvG~~ 215 (228)
|.+++ |++|+.+.+.|+++|+.|+ .+.|++||.++. ...|+++.+||+++ +|+. .+.|..
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~ 69 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAP 69 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCC
Confidence 44444 9999999999999999985 589999998763 47899999999986 8863 677754
No 73
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.33 E-value=2.2e-06 Score=66.86 Aligned_cols=67 Identities=19% Similarity=0.133 Sum_probs=54.3
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--------------------------CCCCCCCCCCc-
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT--------------------------CIPNYPDKNLP- 197 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--------------------------~~~~y~v~~LP- 197 (228)
+.+|||+| |++|+.+.+.|.++++++. ++|+-|+.+. ....|++..+|
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~ 103 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPE 103 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCe
Confidence 46888888 9999999999999999984 8888777431 12358999999
Q ss_pred EEEEEECCEEEeEEeCccc
Q psy14385 198 TLFIYFEGKMQSQMVGPDE 216 (228)
Q Consensus 198 TllvYk~G~~v~~lvG~~~ 216 (228)
++++.++|+++.++.|...
T Consensus 104 ~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 104 TFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred EEEECCCceEEEEEeccCC
Confidence 6666689999999999754
No 74
>KOG0190|consensus
Probab=98.23 E-value=2.1e-06 Score=82.95 Aligned_cols=85 Identities=24% Similarity=0.430 Sum_probs=73.1
Q ss_pred CceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC----CCcEEEEEeCCC---CCCCCCCCCCc
Q psy14385 129 GRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF----PTTKFIKSISTT---CIPNYPDKNLP 197 (228)
Q Consensus 129 G~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky----p~~KFvkI~ad~---~~~~y~v~~LP 197 (228)
..|..++.++|...|..++ +|+|-| |++|+.|.|.+...|... |.++.+|||++. .+.+|.+++.|
T Consensus 25 ~~Vl~Lt~dnf~~~i~~~~---~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 25 EDVLVLTKDNFKETINGHE---FVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred cceEEEecccHHHHhccCc---eEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 4689999999999998664 787877 999999999999999875 479999999987 36899999999
Q ss_pred EEEEEECCEEEeEEeCccc
Q psy14385 198 TLFIYFEGKMQSQMVGPDE 216 (228)
Q Consensus 198 TllvYk~G~~v~~lvG~~~ 216 (228)
|+.+||||.....+.|...
T Consensus 102 TlkiFrnG~~~~~Y~G~r~ 120 (493)
T KOG0190|consen 102 TLKIFRNGRSAQDYNGPRE 120 (493)
T ss_pred eEEEEecCCcceeccCccc
Confidence 9999999998666667653
No 75
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.19 E-value=2.5e-06 Score=67.94 Aligned_cols=73 Identities=11% Similarity=0.247 Sum_probs=59.9
Q ss_pred ceEEeChhhHHHHHHhcCCCceEEEEe-c--cchHHHHHHHHHHHHhCC----CcEEEEEeCCC--------CCCCCCCC
Q psy14385 130 RVLEINGDTYVQEVNNAGEGIWVVLHF-I--PLCSLINNHLSELAAKFP----TTKFIKSISTT--------CIPNYPDK 194 (228)
Q Consensus 130 ~V~eIs~edf~~eV~~a~~~~~VVVhf-~--~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~--------~~~~y~v~ 194 (228)
.++.++..+|.+.|.+. ..|+|.| . |-|.. .+++..||.+|- .+.+.+|++++ ...+|+|.
T Consensus 2 g~v~L~~~nF~~~v~~~---~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 2 GCVDLDTVTFYKVIPKF---KYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred CeeECChhhHHHHHhcC---CcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCC
Confidence 36688999999988654 4799999 6 88886 488999998872 48899999942 45899999
Q ss_pred --CCcEEEEEECCE
Q psy14385 195 --NLPTLFIYFEGK 206 (228)
Q Consensus 195 --~LPTllvYk~G~ 206 (228)
+.|||++|++|.
T Consensus 78 ~~gyPTl~lF~~g~ 91 (116)
T cd03007 78 KESYPVIYLFHGGD 91 (116)
T ss_pred cCCCCEEEEEeCCC
Confidence 999999999995
No 76
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.18 E-value=3.4e-06 Score=82.95 Aligned_cols=85 Identities=18% Similarity=0.269 Sum_probs=68.6
Q ss_pred eEEe-ChhhHHHHHHhcC-CCceEEEEe----ccchHHHHHHH---HHHHHhCCCcEEEEEeCCCC-------CCCCCCC
Q psy14385 131 VLEI-NGDTYVQEVNNAG-EGIWVVLHF----IPLCSLINNHL---SELAAKFPTTKFIKSISTTC-------IPNYPDK 194 (228)
Q Consensus 131 V~eI-s~edf~~eV~~a~-~~~~VVVhf----~~~C~~l~~~L---~~LA~kyp~~KFvkI~ad~~-------~~~y~v~ 194 (228)
..++ +.+++.+.+..+. ++++|+|+| |++|+.|.+.. .++++++.++.|+++|.++. ..+|++.
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~ 533 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVL 533 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCC
Confidence 4566 5678888886542 257899999 99999999875 77888888999999998753 3679999
Q ss_pred CCcEEEEEE-CCEE--EeEEeCcc
Q psy14385 195 NLPTLFIYF-EGKM--QSQMVGPD 215 (228)
Q Consensus 195 ~LPTllvYk-~G~~--v~~lvG~~ 215 (228)
++||+++|. +|+. +.+++|..
T Consensus 534 g~Pt~~~~~~~G~~i~~~r~~G~~ 557 (571)
T PRK00293 534 GLPTILFFDAQGQEIPDARVTGFM 557 (571)
T ss_pred CCCEEEEECCCCCCcccccccCCC
Confidence 999999996 8998 46788864
No 77
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.17 E-value=9.8e-06 Score=59.62 Aligned_cols=64 Identities=23% Similarity=0.411 Sum_probs=55.5
Q ss_pred ceEEEEe----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCCC--------------------------CCCCCCCCCc
Q psy14385 150 IWVVLHF----IPLCSLINNHLSELAAKF--PTTKFIKSISTTC--------------------------IPNYPDKNLP 197 (228)
Q Consensus 150 ~~VVVhf----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~~--------------------------~~~y~v~~LP 197 (228)
.+++|.| |+.|+...+.|..+..+| ++++|+.|+.+.. ...|++.++|
T Consensus 20 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 99 (116)
T cd02966 20 KVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGLP 99 (116)
T ss_pred CEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCccc
Confidence 5777777 999999999999999999 7899999888762 4678999999
Q ss_pred EEEEEE-CCEEEeEEeC
Q psy14385 198 TLFIYF-EGKMQSQMVG 213 (228)
Q Consensus 198 TllvYk-~G~~v~~lvG 213 (228)
+++++. +|+++.++.|
T Consensus 100 ~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 100 TTFLIDRDGRIRARHVG 116 (116)
T ss_pred eEEEECCCCcEEEEecC
Confidence 999995 8999988876
No 78
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.12 E-value=9.2e-06 Score=73.02 Aligned_cols=66 Identities=11% Similarity=0.142 Sum_probs=50.3
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--------------CCCCCCCCCCcEEEEEEC-CEEEe
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT--------------CIPNYPDKNLPTLFIYFE-GKMQS 209 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--------------~~~~y~v~~LPTllvYk~-G~~v~ 209 (228)
+.++||+| |++|+.+.++|..++.+|. +.++-|+.+. ....|++..+||+++++. |..+.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 46888888 9999999999999999996 4555444432 235899999999999996 55554
Q ss_pred E-EeCcc
Q psy14385 210 Q-MVGPD 215 (228)
Q Consensus 210 ~-lvG~~ 215 (228)
. ..|+.
T Consensus 245 ~v~~G~~ 251 (271)
T TIGR02740 245 PIGFGVM 251 (271)
T ss_pred EEEeCCC
Confidence 4 34653
No 79
>KOG0190|consensus
Probab=98.06 E-value=1.2e-05 Score=77.89 Aligned_cols=79 Identities=22% Similarity=0.343 Sum_probs=68.8
Q ss_pred CCceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCCC-CCCCCCCCCcEE
Q psy14385 128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTTC-IPNYPDKNLPTL 199 (228)
Q Consensus 128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~~-~~~y~v~~LPTl 199 (228)
-+.|.-+-+.+|...|.+.++ -|+|.| |++|+.+.|++++||.+|. ++-++|||++.. ++...+.+.|||
T Consensus 365 ~~pVkvvVgknfd~iv~de~K--dVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~~~~~~fPTI 442 (493)
T KOG0190|consen 365 RSPVKVVVGKNFDDIVLDEGK--DVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPSLKVDGFPTI 442 (493)
T ss_pred cCCeEEEeecCHHHHhhcccc--ceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCccccccccceE
Confidence 367999999999999987764 578877 9999999999999999984 688999999975 688888999999
Q ss_pred EEEECCEEE
Q psy14385 200 FIYFEGKMQ 208 (228)
Q Consensus 200 lvYk~G~~v 208 (228)
++|+.|...
T Consensus 443 ~~~pag~k~ 451 (493)
T KOG0190|consen 443 LFFPAGHKS 451 (493)
T ss_pred EEecCCCCC
Confidence 999999843
No 80
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.98 E-value=1.4e-05 Score=62.73 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=48.7
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhCC----CcEEEEEeCCCC---------------------------CCCCCC
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKFP----TTKFIKSISTTC---------------------------IPNYPD 193 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~~---------------------------~~~y~v 193 (228)
+++|||+| |++|+.+.+.|.+++++|. ++.++-|+.+.. ...|++
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI 97 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC
Confidence 46899999 9999999999999988763 456665554421 246899
Q ss_pred CCCcEEEEEE-CCEEEeE
Q psy14385 194 KNLPTLFIYF-EGKMQSQ 210 (228)
Q Consensus 194 ~~LPTllvYk-~G~~v~~ 210 (228)
.++||+++|. +|+++.+
T Consensus 98 ~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 98 EGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCEEEEECCCCCEEcc
Confidence 9999999996 8988766
No 81
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.92 E-value=7.3e-05 Score=59.95 Aligned_cols=66 Identities=14% Similarity=-0.058 Sum_probs=51.3
Q ss_pred CceEEEEe----ccchHHHHHH-H--HHHHHh-CCCcEEEEEeCCCCCC-----------CCCCCCCcEEEEE-ECCEEE
Q psy14385 149 GIWVVLHF----IPLCSLINNH-L--SELAAK-FPTTKFIKSISTTCIP-----------NYPDKNLPTLFIY-FEGKMQ 208 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~-L--~~LA~k-yp~~KFvkI~ad~~~~-----------~y~v~~LPTllvY-k~G~~v 208 (228)
+++|+|+| |+.|+.|.+. + .+++.. +.+..+|++|+++.++ .|++.+.||++++ .+|+.+
T Consensus 15 ~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~ 94 (124)
T cd02955 15 DKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPF 94 (124)
T ss_pred CCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEE
Confidence 36899999 9999999873 3 246655 4578889999987431 3689999999999 569999
Q ss_pred eEEeCc
Q psy14385 209 SQMVGP 214 (228)
Q Consensus 209 ~~lvG~ 214 (228)
.+..++
T Consensus 95 ~~~~~~ 100 (124)
T cd02955 95 FGGTYF 100 (124)
T ss_pred eeeeec
Confidence 888665
No 82
>KOG0914|consensus
Probab=97.91 E-value=1.4e-05 Score=70.34 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=71.8
Q ss_pred CCCceEEe-ChhhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhC--CCcEEEEEeCCCC---CCCCCC----
Q psy14385 127 RFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKF--PTTKFIKSISTTC---IPNYPD---- 193 (228)
Q Consensus 127 ~fG~V~eI-s~edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~~---~~~y~v---- 193 (228)
+-|.+.-. +.+.+..+.+......|+|.+| .+.|+...|++.+|+.+| +..+|-|+|.-.. +.+|.+
T Consensus 122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~ 201 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSP 201 (265)
T ss_pred CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCc
Confidence 34566666 4566677777665556888888 899999999999999999 5799999998763 355654
Q ss_pred --CCCcEEEEEECCEEEeEEeCccccC
Q psy14385 194 --KNLPTLFIYFEGKMQSQMVGPDEFR 218 (228)
Q Consensus 194 --~~LPTllvYk~G~~v~~lvG~~~~G 218 (228)
+.|||+++|++|+.+.+.--+..-|
T Consensus 202 ~srQLPT~ilFq~gkE~~RrP~vd~~g 228 (265)
T KOG0914|consen 202 GSRQLPTYILFQKGKEVSRRPDVDVKG 228 (265)
T ss_pred ccccCCeEEEEccchhhhcCccccccC
Confidence 6899999999999998876655544
No 83
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.87 E-value=5.4e-05 Score=63.71 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=52.1
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC--------------------------CCCCCCCCCcE
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC--------------------------IPNYPDKNLPT 198 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~--------------------------~~~y~v~~LPT 198 (228)
+++|||+| |++|+...+.|.+++.+ +++|+-|+.++- ...|++.++|+
T Consensus 68 gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~ 145 (185)
T PRK15412 68 GKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPE 145 (185)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCe
Confidence 46899999 99999999999999874 678888875430 01578999995
Q ss_pred -EEEEECCEEEeEEeCccc
Q psy14385 199 -LFIYFEGKMQSQMVGPDE 216 (228)
Q Consensus 199 -llvYk~G~~v~~lvG~~~ 216 (228)
+++-++|+++.+.+|...
T Consensus 146 t~vid~~G~i~~~~~G~~~ 164 (185)
T PRK15412 146 TFLIDGNGIIRYRHAGDLN 164 (185)
T ss_pred EEEECCCceEEEEEecCCC
Confidence 555579999999999753
No 84
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.87 E-value=3e-05 Score=75.77 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=56.6
Q ss_pred CCceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCC----------------------------C---CCCC
Q psy14385 148 EGIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIST----------------------------T---CIPN 190 (228)
Q Consensus 148 ~~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad----------------------------~---~~~~ 190 (228)
++++|||+| |++|+.+.|.|.+|+++|. ++.|+-|..+ . ....
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 357899999 9999999999999999986 6788776531 0 1256
Q ss_pred CCCCCCcEEE-EEECCEEEeEEeCcccc
Q psy14385 191 YPDKNLPTLF-IYFEGKMQSQMVGPDEF 217 (228)
Q Consensus 191 y~v~~LPTll-vYk~G~~v~~lvG~~~~ 217 (228)
|.+.++||++ +.++|+++..++|....
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~~~ 162 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSISE 162 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCCCH
Confidence 8999999995 55899999999997643
No 85
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.78 E-value=9.5e-05 Score=61.42 Aligned_cols=65 Identities=22% Similarity=0.202 Sum_probs=50.7
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC--------------------------CCCCCCCCCCc-
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT--------------------------CIPNYPDKNLP- 197 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~--------------------------~~~~y~v~~LP- 197 (228)
+++|||+| |++|+.+.+.+.+++++ +++++.|+.+. ....|++.++|
T Consensus 63 gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~ 140 (173)
T TIGR00385 63 GKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPE 140 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCe
Confidence 46899999 99999999999999876 46666666431 12457889999
Q ss_pred EEEEEECCEEEeEEeCcc
Q psy14385 198 TLFIYFEGKMQSQMVGPD 215 (228)
Q Consensus 198 TllvYk~G~~v~~lvG~~ 215 (228)
|+++.++|+++...+|..
T Consensus 141 ~~~id~~G~i~~~~~G~~ 158 (173)
T TIGR00385 141 TFLVDGNGVILYRHAGPL 158 (173)
T ss_pred EEEEcCCceEEEEEeccC
Confidence 555668999999999964
No 86
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.77 E-value=6.6e-05 Score=59.36 Aligned_cols=63 Identities=21% Similarity=0.320 Sum_probs=48.3
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhCC----CcEEEEEeCCCC----------------------------CCCCC
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKFP----TTKFIKSISTTC----------------------------IPNYP 192 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~~----------------------------~~~y~ 192 (228)
+++|||+| |++|+.+.+.|.+++++|. .+.++-|+.+.- ...|+
T Consensus 17 Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 96 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFK 96 (132)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcC
Confidence 46889999 9999999999999988774 355655544321 13489
Q ss_pred CCCCcEEEEEE-CCEEEeEE
Q psy14385 193 DKNLPTLFIYF-EGKMQSQM 211 (228)
Q Consensus 193 v~~LPTllvYk-~G~~v~~l 211 (228)
+.++||++++. +|+++.+-
T Consensus 97 v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 97 VEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred CCCCCEEEEECCCCCEEchh
Confidence 99999999996 78887664
No 87
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.76 E-value=2.9e-05 Score=58.96 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=48.9
Q ss_pred CceEEEEe----ccchHHHHHHHHH---HHHhC-CCcEEEEEeCCC-----------------------CCCCCCCCCCc
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSE---LAAKF-PTTKFIKSISTT-----------------------CIPNYPDKNLP 197 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~---LA~ky-p~~KFvkI~ad~-----------------------~~~~y~v~~LP 197 (228)
+.++|+.| |+.|+.+.+.+.. ++..+ .+..++.++.+. ....|++.+.|
T Consensus 5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtP 84 (112)
T PF13098_consen 5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTP 84 (112)
T ss_dssp SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccC
Confidence 46777777 9999999999986 44444 257777777663 13568999999
Q ss_pred EEEEEE-CCEEEeEEeCccc
Q psy14385 198 TLFIYF-EGKMQSQMVGPDE 216 (228)
Q Consensus 198 TllvYk-~G~~v~~lvG~~~ 216 (228)
|++++. +|+.+..+.|+..
T Consensus 85 t~~~~d~~G~~v~~~~G~~~ 104 (112)
T PF13098_consen 85 TIVFLDKDGKIVYRIPGYLS 104 (112)
T ss_dssp EEEECTTTSCEEEEEESS--
T ss_pred EEEEEcCCCCEEEEecCCCC
Confidence 999995 8999999999864
No 88
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.75 E-value=9.3e-05 Score=57.94 Aligned_cols=66 Identities=23% Similarity=0.320 Sum_probs=53.5
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCC-----C-------------C------------CCCCC
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIST-----T-------------C------------IPNYP 192 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad-----~-------------~------------~~~y~ 192 (228)
+++|||+| |++|....+.|.+|+++|. ++.++-|..+ . . ...|+
T Consensus 23 gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~ 102 (126)
T cd03012 23 GKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYG 102 (126)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhC
Confidence 45788888 9999999999999999997 4778877541 0 0 13478
Q ss_pred CCCCcEEEEE-ECCEEEeEEeCc
Q psy14385 193 DKNLPTLFIY-FEGKMQSQMVGP 214 (228)
Q Consensus 193 v~~LPTllvY-k~G~~v~~lvG~ 214 (228)
+..+|+.+++ ++|+++...+|.
T Consensus 103 v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 103 NQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCcCCeEEEECCCCcEEEEEecC
Confidence 8999999999 689999999985
No 89
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.69 E-value=0.00019 Score=59.50 Aligned_cols=66 Identities=14% Similarity=0.224 Sum_probs=48.6
Q ss_pred ceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---------------C-CCC---CCCCCcEEEEEE-C-
Q psy14385 150 IWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---------------I-PNY---PDKNLPTLFIYF-E- 204 (228)
Q Consensus 150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---------------~-~~y---~v~~LPTllvYk-~- 204 (228)
.++||+| |++|+...|.|.+++++|. +.|+-|+.+.. . ..| .+.++||.+++. +
T Consensus 51 ~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G 129 (153)
T TIGR02738 51 DYALVFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNT 129 (153)
T ss_pred CCEEEEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCC
Confidence 3668888 9999999999999999994 66666655431 1 224 678999999994 3
Q ss_pred CEEEeEEeCccc
Q psy14385 205 GKMQSQMVGPDE 216 (228)
Q Consensus 205 G~~v~~lvG~~~ 216 (228)
|..+....|...
T Consensus 130 ~~i~~~~~G~~s 141 (153)
T TIGR02738 130 RKAYPVLQGAVD 141 (153)
T ss_pred CEEEEEeecccC
Confidence 445667788653
No 90
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.66 E-value=0.00015 Score=76.10 Aligned_cols=68 Identities=22% Similarity=0.279 Sum_probs=55.7
Q ss_pred CCceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeC-----CC-------------------------CCCCC
Q psy14385 148 EGIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSIS-----TT-------------------------CIPNY 191 (228)
Q Consensus 148 ~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~a-----d~-------------------------~~~~y 191 (228)
++++|||+| |++|+...|.|.+|+++|++ +.|+.|.. ++ ....|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 357899999 99999999999999999975 56666631 11 12468
Q ss_pred CCCCCcEEEEE-ECCEEEeEEeCcc
Q psy14385 192 PDKNLPTLFIY-FEGKMQSQMVGPD 215 (228)
Q Consensus 192 ~v~~LPTllvY-k~G~~v~~lvG~~ 215 (228)
.+.++||+++| ++|+++.++.|..
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~ 523 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEG 523 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEeccc
Confidence 99999999999 7999999999954
No 91
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.64 E-value=0.00024 Score=57.80 Aligned_cols=68 Identities=26% Similarity=0.345 Sum_probs=54.7
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhCCC--cEEEEEeCCC-------------------------CCCCCCCCCCc
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKFPT--TKFIKSISTT-------------------------CIPNYPDKNLP 197 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~--~KFvkI~ad~-------------------------~~~~y~v~~LP 197 (228)
+++++|.| |+.|+...+.|.+++++|++ ++|+-|..+. ....|++..+|
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 140 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLP 140 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcC
Confidence 35777777 99999999999999999964 7888887642 12678999999
Q ss_pred EEEEEE-CCEEEeEEeCccc
Q psy14385 198 TLFIYF-EGKMQSQMVGPDE 216 (228)
Q Consensus 198 TllvYk-~G~~v~~lvG~~~ 216 (228)
+++++. +|+++..+.|...
T Consensus 141 ~~~lid~~g~i~~~~~g~~~ 160 (173)
T PRK03147 141 TTFLIDKDGKVVKVITGEMT 160 (173)
T ss_pred eEEEECCCCcEEEEEeCCCC
Confidence 887775 8999988888653
No 92
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.53 E-value=0.00029 Score=54.22 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=48.9
Q ss_pred ceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCC------------------------CCCCCCCCCCCcEEEE
Q psy14385 150 IWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSIST------------------------TCIPNYPDKNLPTLFI 201 (228)
Q Consensus 150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad------------------------~~~~~y~v~~LPTllv 201 (228)
.++||.| |+.|+.+.+.|..++.++. +-.+.++.+ .....|++.++||+++
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~v 99 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIVI 99 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEEEE
Confidence 5677777 9999999999999998843 222222221 1235799999999999
Q ss_pred EECCEEEeEEeCcccc
Q psy14385 202 YFEGKMQSQMVGPDEF 217 (228)
Q Consensus 202 Yk~G~~v~~lvG~~~~ 217 (228)
|.+|.++..+.|+...
T Consensus 100 id~~gi~~~~~g~~~~ 115 (123)
T cd03011 100 VDPGGIVFVTTGVTSE 115 (123)
T ss_pred EcCCCeEEEEeccCCH
Confidence 9876688888887643
No 93
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.51 E-value=0.0001 Score=52.98 Aligned_cols=64 Identities=23% Similarity=0.440 Sum_probs=55.2
Q ss_pred ceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCC-C---CCCCCC--CCCCcEEEEEECCEEEeEEeC
Q psy14385 150 IWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSIST-T---CIPNYP--DKNLPTLFIYFEGKMQSQMVG 213 (228)
Q Consensus 150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad-~---~~~~y~--v~~LPTllvYk~G~~v~~lvG 213 (228)
.+++++| |+.|+.+.+.|.+++.+++ .+.|+.+++. . ....|. +..+|+++++.+|..+..+.|
T Consensus 33 ~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 107 (127)
T COG0526 33 KPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVG 107 (127)
T ss_pred ceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence 5788885 9999999999999999998 5999999996 3 346788 899999999999988777666
No 94
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.50 E-value=0.00028 Score=58.18 Aligned_cols=63 Identities=17% Similarity=0.382 Sum_probs=49.0
Q ss_pred CCceEEEEe----ccchHHHHHHHHHHHHhCC---------CcEEEEEeCCCC---------------------------
Q psy14385 148 EGIWVVLHF----IPLCSLINNHLSELAAKFP---------TTKFIKSISTTC--------------------------- 187 (228)
Q Consensus 148 ~~~~VVVhf----~~~C~~l~~~L~~LA~kyp---------~~KFvkI~ad~~--------------------------- 187 (228)
++++|+|+| |++|+...|.|.++..++. ++.++-|+.+.-
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 357899999 9999999999999876542 467777776630
Q ss_pred -CCCCCCCCCcEEEEEE-CCEEEeE
Q psy14385 188 -IPNYPDKNLPTLFIYF-EGKMQSQ 210 (228)
Q Consensus 188 -~~~y~v~~LPTllvYk-~G~~v~~ 210 (228)
...|++.++||++++. +|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 1357889999999997 7888765
No 95
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.48 E-value=0.00048 Score=44.02 Aligned_cols=49 Identities=27% Similarity=0.335 Sum_probs=43.5
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCC------CCCCCCCCcEEEEEECC
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTCI------PNYPDKNLPTLFIYFEG 205 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~------~~y~v~~LPTllvYk~G 205 (228)
|+.|..+.+.+..++...+++.|+.++.+... ..++...+|+++++..|
T Consensus 9 c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 9 CPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred ChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 99999999999999666788999999988753 37899999999999998
No 96
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.47 E-value=0.00028 Score=52.01 Aligned_cols=56 Identities=27% Similarity=0.354 Sum_probs=45.4
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhCC---CcEEEEEeCCCC----------------------------CCCCCC
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKFP---TTKFIKSISTTC----------------------------IPNYPD 193 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp---~~KFvkI~ad~~----------------------------~~~y~v 193 (228)
|++|+|.| |++|+...+.|.++.++|+ ++.|+-|..+.- ...|.+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 35788888 9999999999999999999 789988877641 145789
Q ss_pred CCCcEEEEEEC
Q psy14385 194 KNLPTLFIYFE 204 (228)
Q Consensus 194 ~~LPTllvYk~ 204 (228)
.++|+++++..
T Consensus 81 ~~iP~~~lld~ 91 (95)
T PF13905_consen 81 NGIPTLVLLDP 91 (95)
T ss_dssp TSSSEEEEEET
T ss_pred CcCCEEEEECC
Confidence 99999999875
No 97
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.45 E-value=0.00057 Score=51.84 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=44.4
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC---C--------------------CCCCCCCCCcEEE
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTT---C--------------------IPNYPDKNLPTLF 200 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~---~--------------------~~~y~v~~LPTll 200 (228)
+++|||+| |++|+.+.+.|++++++|. ++.++.+..+. . ...|++..+|+.+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~ 100 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAV 100 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEE
Confidence 46788888 9999999999999999884 57777552121 0 1346677788887
Q ss_pred EEE-CCEEEeE
Q psy14385 201 IYF-EGKMQSQ 210 (228)
Q Consensus 201 vYk-~G~~v~~ 210 (228)
++. +|+++.+
T Consensus 101 vid~~G~v~~~ 111 (114)
T cd02967 101 LLDEAGVIAAK 111 (114)
T ss_pred EECCCCeEEec
Confidence 775 5766543
No 98
>KOG0911|consensus
Probab=97.41 E-value=5.8e-05 Score=66.29 Aligned_cols=83 Identities=20% Similarity=0.349 Sum_probs=71.3
Q ss_pred ceEEe-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385 130 RVLEI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFI 201 (228)
Q Consensus 130 ~V~eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllv 201 (228)
.|.+| ..++| ...+ +..+|+|| +.+|..|+.++..+|...+++.|++++++.. +..+.+.+.|++.+
T Consensus 2 ~v~~i~~~~~f---~~~~--~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~ 76 (227)
T KOG0911|consen 2 TVQFIVFQEQF---LDQK--GKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVF 76 (227)
T ss_pred CceeehhHHHH---HHhc--cchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeee
Confidence 46677 55777 3223 46789999 9999999999999999999999999999984 58899999999999
Q ss_pred EECCEEEeEEeCcccc
Q psy14385 202 YFEGKMQSQMVGPDEF 217 (228)
Q Consensus 202 Yk~G~~v~~lvG~~~~ 217 (228)
+..|+.+..+.|.+..
T Consensus 77 ~~~~~~v~~l~~~~~~ 92 (227)
T KOG0911|consen 77 FFLGEKVDRLSGADPP 92 (227)
T ss_pred eecchhhhhhhccCcH
Confidence 9999999999998754
No 99
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.18 E-value=0.0022 Score=49.48 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=50.7
Q ss_pred CceEEEEe----ccchHHHHH-HHH--HHHHhC-CCcEEEEEeCCC-----CCCCCCCCCCcEEEEEE--CCEEEeEEeC
Q psy14385 149 GIWVVLHF----IPLCSLINN-HLS--ELAAKF-PTTKFIKSISTT-----CIPNYPDKNLPTLFIYF--EGKMQSQMVG 213 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~-~L~--~LA~ky-p~~KFvkI~ad~-----~~~~y~v~~LPTllvYk--~G~~v~~lvG 213 (228)
+++++|+| |+.|+.|.. .|. .+.+.. .+.-+++++++. .+..|++.++||++++. +|+.+.++.|
T Consensus 17 ~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G 96 (114)
T cd02958 17 KKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSG 96 (114)
T ss_pred CceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcC
Confidence 47999999 999999975 332 233222 245566777764 35789999999999997 6999999999
Q ss_pred ccc
Q psy14385 214 PDE 216 (228)
Q Consensus 214 ~~~ 216 (228)
...
T Consensus 97 ~~~ 99 (114)
T cd02958 97 NIT 99 (114)
T ss_pred CCC
Confidence 753
No 100
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.08 E-value=0.0017 Score=51.58 Aligned_cols=68 Identities=29% Similarity=0.379 Sum_probs=54.2
Q ss_pred CceEEEEe-----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCCC------------------------CCCCCCC---
Q psy14385 149 GIWVVLHF-----IPLCSLINNHLSELAAKF--PTTKFIKSISTTC------------------------IPNYPDK--- 194 (228)
Q Consensus 149 ~~~VVVhf-----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~~------------------------~~~y~v~--- 194 (228)
+++|||+| |++|+.-.+.|.+|+++| .++.|+-|.++.. ...|++.
T Consensus 28 gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 107 (146)
T PF08534_consen 28 GKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIME 107 (146)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEEC
T ss_pred CCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcccc
Confidence 46788887 999999999999999986 3588887776531 1457777
Q ss_pred ------CCcEE-EEEECCEEEeEEeCccc
Q psy14385 195 ------NLPTL-FIYFEGKMQSQMVGPDE 216 (228)
Q Consensus 195 ------~LPTl-lvYk~G~~v~~lvG~~~ 216 (228)
.+|++ +|-++|+++...+|...
T Consensus 108 ~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 108 DPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp CTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99975 66788999999999775
No 101
>KOG0912|consensus
Probab=97.04 E-value=0.00072 Score=62.27 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=56.4
Q ss_pred hhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHh----CCC--cEEEEEeCCC---CCCCCCCCCCcEEEEEE
Q psy14385 137 DTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAK----FPT--TKFIKSISTT---CIPNYPDKNLPTLFIYF 203 (228)
Q Consensus 137 edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~k----yp~--~KFvkI~ad~---~~~~y~v~~LPTllvYk 203 (228)
++....+..+ ..|+|.| |+-+++|.|++++-|++ ||+ +-+.+||++. .+.+|.+.--||+-+|+
T Consensus 4 ~N~~~il~s~---elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 4 ENIDSILDSN---ELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccHHHhhccc---eEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 4444444433 4788888 99999999999999976 574 5566777775 46899999999999999
Q ss_pred CCEEEeE
Q psy14385 204 EGKMQSQ 210 (228)
Q Consensus 204 ~G~~v~~ 210 (228)
||.+..+
T Consensus 81 nG~~~~r 87 (375)
T KOG0912|consen 81 NGEMMKR 87 (375)
T ss_pred ccchhhh
Confidence 9998873
No 102
>KOG0191|consensus
Probab=96.96 E-value=0.0012 Score=61.44 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=63.8
Q ss_pred cCCCceEEeChhhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcE
Q psy14385 126 SRFGRVLEINGDTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPT 198 (228)
Q Consensus 126 ~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPT 198 (228)
...|....++...|...+.... +.++|.++ |++|+.+.+.+..+|..+-+ +++..||.+.. ...|.+.+.||
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPt 104 (383)
T KOG0191|consen 26 LASGVVSELTLDSFFDFLLKDD-SPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPT 104 (383)
T ss_pred ccccchhhhhccccHHHhhccC-CceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcE
Confidence 3455666666566665555443 23444444 99999999999999999866 88999998863 58999999999
Q ss_pred EEEEECCEEEeEEeC
Q psy14385 199 LFIYFEGKMQSQMVG 213 (228)
Q Consensus 199 llvYk~G~~v~~lvG 213 (228)
+.+|+.|...-.+.|
T Consensus 105 l~~f~~~~~~~~~~~ 119 (383)
T KOG0191|consen 105 LKVFRPGKKPIDYSG 119 (383)
T ss_pred EEEEcCCCceeeccC
Confidence 999999933333334
No 103
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.95 E-value=0.0027 Score=49.97 Aligned_cols=84 Identities=18% Similarity=0.250 Sum_probs=61.5
Q ss_pred eEEeChhhHHHHHHhcCCCceEEEEe------ccchHHHHHHHHHHHHhCCCcEEEEEeCCC----CCCCCCCCCCcEEE
Q psy14385 131 VLEINGDTYVQEVNNAGEGIWVVLHF------IPLCSLINNHLSELAAKFPTTKFIKSISTT----CIPNYPDKNLPTLF 200 (228)
Q Consensus 131 V~eIs~edf~~eV~~a~~~~~VVVhf------~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~----~~~~y~v~~LPTll 200 (228)
...++.+++..-+... ...|++| ++.|.-+.=+|-+|.+.|+..-..-+.+.. ...+|++...|+++
T Consensus 11 ~~~vd~~~ld~~l~~~---~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLv 87 (107)
T PF07449_consen 11 WPRVDADTLDAFLAAP---GDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALV 87 (107)
T ss_dssp EEEE-CCCHHHHHHCC---SCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEE
T ss_pred CeeechhhHHHHHhCC---CcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEE
Confidence 3355555555555443 2567777 788888999999999999985544443322 34889999999999
Q ss_pred EEECCEEEeEEeCcccc
Q psy14385 201 IYFEGKMQSQMVGPDEF 217 (228)
Q Consensus 201 vYk~G~~v~~lvG~~~~ 217 (228)
+||+|+.++.+.|+..+
T Consensus 88 f~R~g~~lG~i~gi~dW 104 (107)
T PF07449_consen 88 FFRDGRYLGAIEGIRDW 104 (107)
T ss_dssp EEETTEEEEEEESSSTH
T ss_pred EEECCEEEEEecCeecc
Confidence 99999999999998765
No 104
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.88 E-value=0.005 Score=49.60 Aligned_cols=76 Identities=11% Similarity=0.137 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCC---CC---CCCCCCCCcEEEEE-ECCEEE
Q psy14385 139 YVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTT---CI---PNYPDKNLPTLFIY-FEGKMQ 208 (228)
Q Consensus 139 f~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~---~~---~~y~v~~LPTllvY-k~G~~v 208 (228)
....+....++..++|.. ||.|...-|+|..+|...|.+.+--+..++ .. ...+.+.+|||+++ ++|+.+
T Consensus 32 ~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~l 111 (129)
T PF14595_consen 32 QIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKEL 111 (129)
T ss_dssp HHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EE
T ss_pred HHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEe
Confidence 333444333333445544 999999999999999999976553333332 12 22678999999999 568999
Q ss_pred eEEeCc
Q psy14385 209 SQMVGP 214 (228)
Q Consensus 209 ~~lvG~ 214 (228)
++++..
T Consensus 112 g~wger 117 (129)
T PF14595_consen 112 GRWGER 117 (129)
T ss_dssp EEEESS
T ss_pred EEEcCC
Confidence 888653
No 105
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.86 E-value=0.0031 Score=43.30 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=37.9
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIYFEGKMQSQMVGPD 215 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvYk~G~~v~~lvG~~ 215 (228)
|+.|+.+.+.|+. .++.|..+|.+.. ...+++.++||++++ |+. ++|+.
T Consensus 10 C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~ 65 (74)
T TIGR02196 10 CPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFD 65 (74)
T ss_pred ChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCC
Confidence 9999999998876 3688888888763 234899999999985 654 56653
No 106
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=96.85 E-value=0.004 Score=53.28 Aligned_cols=65 Identities=20% Similarity=0.350 Sum_probs=49.8
Q ss_pred EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC--------C--------CCCCC--CCCcEEEEE-ECCEEE-
Q psy14385 152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC--------I--------PNYPD--KNLPTLFIY-FEGKMQ- 208 (228)
Q Consensus 152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~--------~--------~~y~v--~~LPTllvY-k~G~~v- 208 (228)
||+++ |++|+...+.|.+++++|. +.++-|+.+.- . ..|++ .++||.+++ ++|..+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 45544 9999999999999999995 77776665531 1 24674 699999999 789886
Q ss_pred eEEeCcccc
Q psy14385 209 SQMVGPDEF 217 (228)
Q Consensus 209 ~~lvG~~~~ 217 (228)
...+|....
T Consensus 152 ~~~~G~~~~ 160 (181)
T PRK13728 152 PLLQGATDA 160 (181)
T ss_pred EEEECCCCH
Confidence 578897653
No 107
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=96.84 E-value=0.0042 Score=51.02 Aligned_cols=62 Identities=23% Similarity=0.409 Sum_probs=49.7
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC--------------------------------CCC
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC--------------------------------IPN 190 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~--------------------------------~~~ 190 (228)
+.+|||.| |+.|....+.|.+|+.+|+ ++.|+-|..+.. ...
T Consensus 25 ~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 104 (171)
T cd02969 25 GKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKA 104 (171)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHH
Confidence 35788888 9999999999999999997 689988865320 135
Q ss_pred CCCCCCcEEEEE-ECCEEEeE
Q psy14385 191 YPDKNLPTLFIY-FEGKMQSQ 210 (228)
Q Consensus 191 y~v~~LPTllvY-k~G~~v~~ 210 (228)
|++..+|+++++ ++|+++.+
T Consensus 105 ~~v~~~P~~~lid~~G~v~~~ 125 (171)
T cd02969 105 YGAACTPDFFLFDPDGKLVYR 125 (171)
T ss_pred cCCCcCCcEEEECCCCeEEEe
Confidence 788999999999 58988755
No 108
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.77 E-value=0.0063 Score=48.71 Aligned_cols=75 Identities=21% Similarity=0.299 Sum_probs=49.5
Q ss_pred hhhHHHHHHhc-CCCceEEEEe-----------ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC--------C----CCC
Q psy14385 136 GDTYVQEVNNA-GEGIWVVLHF-----------IPLCSLINNHLSELAAKFP-TTKFIKSISTT--------C----IPN 190 (228)
Q Consensus 136 ~edf~~eV~~a-~~~~~VVVhf-----------~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~--------~----~~~ 190 (228)
-++|.+.|... .++..++|.| ||.|+...+++...-.+.| +..|+.+.+-. + .+.
T Consensus 5 y~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~ 84 (119)
T PF06110_consen 5 YDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPD 84 (119)
T ss_dssp HHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--C
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcce
Confidence 35677777541 2235677777 9999999999999777776 58999887643 1 257
Q ss_pred CCCCCCcEEEEEECCEEEeEEeC
Q psy14385 191 YPDKNLPTLFIYFEGKMQSQMVG 213 (228)
Q Consensus 191 y~v~~LPTllvYk~G~~v~~lvG 213 (228)
+.++++|||+-|..| .++++
T Consensus 85 ~~l~~IPTLi~~~~~---~rL~e 104 (119)
T PF06110_consen 85 LKLKGIPTLIRWETG---ERLVE 104 (119)
T ss_dssp C---SSSEEEECTSS----EEEH
T ss_pred eeeeecceEEEECCC---Cccch
Confidence 999999999999988 44554
No 109
>KOG0191|consensus
Probab=96.76 E-value=0.0029 Score=58.98 Aligned_cols=84 Identities=19% Similarity=0.302 Sum_probs=67.7
Q ss_pred ceEEeChhhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhC---CCcEEEEEeCCC---CCCCCCCCCCcEEE
Q psy14385 130 RVLEINGDTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKF---PTTKFIKSISTT---CIPNYPDKNLPTLF 200 (228)
Q Consensus 130 ~V~eIs~edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~ky---p~~KFvkI~ad~---~~~~y~v~~LPTll 200 (228)
.+.+.+..+|...+.... ..|+|.+| |+.|+.|.+.++.+|..+ ..+++.+++++. ....+.++..||++
T Consensus 145 ~v~~l~~~~~~~~~~~~~-~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~ 223 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSD-ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLK 223 (383)
T ss_pred ceEEccccchhhhhhccC-cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEE
Confidence 488999999988777654 45666666 999999999999999987 458888999863 35889999999999
Q ss_pred EEECCEE-EeEEeCc
Q psy14385 201 IYFEGKM-QSQMVGP 214 (228)
Q Consensus 201 vYk~G~~-v~~lvG~ 214 (228)
+|++|.. .....|.
T Consensus 224 ~f~~~~~~~~~~~~~ 238 (383)
T KOG0191|consen 224 LFPPGEEDIYYYSGL 238 (383)
T ss_pred EecCCCccccccccc
Confidence 9999988 4444443
No 110
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.64 E-value=0.0084 Score=43.38 Aligned_cols=52 Identities=27% Similarity=0.390 Sum_probs=40.7
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC--CCCCCCCCCcEEEEEECCEEEeEEeC
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC--IPNYPDKNLPTLFIYFEGKMQSQMVG 213 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~--~~~y~v~~LPTllvYk~G~~v~~lvG 213 (228)
|+.|..+.+.+.+++..+. +++--++.... +.+|++.++||+++ ||+.+ ++|
T Consensus 10 C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~~~--~~G 63 (76)
T PF13192_consen 10 CPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEIEKYGVMSVPALVI--NGKVV--FVG 63 (76)
T ss_dssp CTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHHHHTT-SSSSEEEE--TTEEE--EES
T ss_pred CCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHHHHcCCCCCCEEEE--CCEEE--EEe
Confidence 9999999999999999995 66655555542 48899999999955 88865 445
No 111
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.58 E-value=0.0069 Score=49.19 Aligned_cols=65 Identities=9% Similarity=0.187 Sum_probs=44.3
Q ss_pred CceEEEEe----ccchHHHHHHH------HHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEE-ECCEEEeEEeCc
Q psy14385 149 GIWVVLHF----IPLCSLINNHL------SELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIY-FEGKMQSQMVGP 214 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L------~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvY-k~G~~v~~lvG~ 214 (228)
+++|+|.| |+.|+.|...+ .+++.+ +.-.++++++.- ... ....+||+++| .+|+++.+++|.
T Consensus 23 ~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~~~~-~g~~vPtivFld~~g~vi~~i~Gy 99 (130)
T cd02960 23 NKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKNLSP-DGQYVPRIMFVDPSLTVRADITGR 99 (130)
T ss_pred CCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCCcCc-cCcccCeEEEECCCCCCccccccc
Confidence 46888888 99999998864 333332 222236665422 112 23689999999 789999999997
Q ss_pred cc
Q psy14385 215 DE 216 (228)
Q Consensus 215 ~~ 216 (228)
..
T Consensus 100 ~~ 101 (130)
T cd02960 100 YS 101 (130)
T ss_pred cc
Confidence 63
No 112
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.42 E-value=0.013 Score=45.79 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=52.6
Q ss_pred ceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC------------------------CCCCCCCCC--
Q psy14385 150 IWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC------------------------IPNYPDKNL-- 196 (228)
Q Consensus 150 ~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~------------------------~~~y~v~~L-- 196 (228)
+++||.| |+.|....+.|.+++++|. ++.|+-|..+.. ...|++...
T Consensus 24 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~ 103 (140)
T cd03017 24 KPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEKK 103 (140)
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccccc
Confidence 5677777 8999999999999999884 588888766530 134677777
Q ss_pred -------cEEEEEE-CCEEEeEEeCccc
Q psy14385 197 -------PTLFIYF-EGKMQSQMVGPDE 216 (228)
Q Consensus 197 -------PTllvYk-~G~~v~~lvG~~~ 216 (228)
|+.+++. +|+++..+.|...
T Consensus 104 ~~~~~~~p~~~lid~~G~v~~~~~g~~~ 131 (140)
T cd03017 104 KKYMGIERSTFLIDPDGKIVKVWRKVKP 131 (140)
T ss_pred cccCCcceeEEEECCCCEEEEEEecCCc
Confidence 8988886 7999999999874
No 113
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=96.39 E-value=0.0086 Score=50.63 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=44.7
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC-----------------------CCCCCCCCCCcEEEE
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT-----------------------CIPNYPDKNLPTLFI 201 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~-----------------------~~~~y~v~~LPTllv 201 (228)
+++|||.| |+.|+.+.+.+.++.+++ ++.++-|..+. ....|++..+|+.++
T Consensus 74 gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~l 152 (189)
T TIGR02661 74 GRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVL 152 (189)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEE
Confidence 46788888 999999999999998775 35555444221 124688999997666
Q ss_pred E-ECCEEEeE
Q psy14385 202 Y-FEGKMQSQ 210 (228)
Q Consensus 202 Y-k~G~~v~~ 210 (228)
+ ++|+++..
T Consensus 153 ID~~G~I~~~ 162 (189)
T TIGR02661 153 LDQDGKIRAK 162 (189)
T ss_pred ECCCCeEEEc
Confidence 4 68988875
No 114
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.37 E-value=0.034 Score=43.93 Aligned_cols=69 Identities=19% Similarity=0.239 Sum_probs=52.9
Q ss_pred CceEEEEe-----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-----------C---------------CCCCCCC--
Q psy14385 149 GIWVVLHF-----IPLCSLINNHLSELAAKFPTTKFIKSISTTC-----------I---------------PNYPDKN-- 195 (228)
Q Consensus 149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-----------~---------------~~y~v~~-- 195 (228)
+++||++| |++|+.-.+.|.+++++|+++.|+-|+.+.. . ..|++..
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~ 105 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKD 105 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeecc
Confidence 35788888 7999999999999999999999999887631 0 1233321
Q ss_pred ----CcEEEEEE-CCEEEeEEeCcccc
Q psy14385 196 ----LPTLFIYF-EGKMQSQMVGPDEF 217 (228)
Q Consensus 196 ----LPTllvYk-~G~~v~~lvG~~~~ 217 (228)
.|+.++.. +|.++...+|....
T Consensus 106 ~~~~~~~~~iid~~G~I~~~~~~~~~~ 132 (143)
T cd03014 106 LGLLARAVFVIDENGKVIYVELVPEIT 132 (143)
T ss_pred CCccceEEEEEcCCCeEEEEEECCCcc
Confidence 57888774 89999999987543
No 115
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.36 E-value=0.0094 Score=41.78 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=37.2
Q ss_pred EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CC-----CCCCCCCcEEEEEECCEEEeE
Q psy14385 152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IP-----NYPDKNLPTLFIYFEGKMQSQ 210 (228)
Q Consensus 152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~-----~y~v~~LPTllvYk~G~~v~~ 210 (228)
|+++. |++|+.+.+.|.++.- .|-.+|.++. .. +++...+|++ ++.+|..+..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~-----~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~~ 65 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA-----AYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLTN 65 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC-----ceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEecC
Confidence 45555 9999999999987744 4445665542 12 2589999997 6888876654
No 116
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.36 E-value=0.011 Score=51.58 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=44.5
Q ss_pred ceEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCC------------CCCCCCCCCCcEEEEEECCEE
Q psy14385 150 IWVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTT------------CIPNYPDKNLPTLFIYFEGKM 207 (228)
Q Consensus 150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~------------~~~~y~v~~LPTllvYk~G~~ 207 (228)
.+-+++| |+.|..+.++|..+|.+|. .+..|.+|..- .+..|++..+|++++..-+..
T Consensus 121 ~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~ 195 (215)
T PF13728_consen 121 KYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTK 195 (215)
T ss_pred CeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCC
Confidence 3555555 9999999999999999994 45566666431 246789999999999888663
No 117
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.30 E-value=0.0081 Score=59.30 Aligned_cols=90 Identities=14% Similarity=0.144 Sum_probs=70.4
Q ss_pred cCCCce-EEeChh-hHHHHHHhcCCCceEEEEe----ccchHHHHHHHH---HHHHhCCCcEEEEEeCCCC-------CC
Q psy14385 126 SRFGRV-LEINGD-TYVQEVNNAGEGIWVVLHF----IPLCSLINNHLS---ELAAKFPTTKFIKSISTTC-------IP 189 (228)
Q Consensus 126 ~~fG~V-~eIs~e-df~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~---~LA~kyp~~KFvkI~ad~~-------~~ 189 (228)
..+++. ..++.. +..+.+.++ ++++|+|+| |-.|+.+.+..= +.+.+.+++..+++|.++. -.
T Consensus 450 ~~~~~~~q~~s~~~~L~~~la~~-~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk 528 (569)
T COG4232 450 VSHGEFWQPISPLAELDQALAEA-KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLK 528 (569)
T ss_pred CccchhhhccCCHHHHHHHHHhC-CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHH
Confidence 345665 667665 566666555 446999999 999999999854 5677789999999999873 27
Q ss_pred CCCCCCCcEEEEEE-CCEEEeEEeCccc
Q psy14385 190 NYPDKNLPTLFIYF-EGKMQSQMVGPDE 216 (228)
Q Consensus 190 ~y~v~~LPTllvYk-~G~~v~~lvG~~~ 216 (228)
+|++-++|++++|. +|+....+.|+..
T Consensus 529 ~~~~~G~P~~~ff~~~g~e~~~l~gf~~ 556 (569)
T COG4232 529 RLGVFGVPTYLFFGPQGSEPEILTGFLT 556 (569)
T ss_pred HcCCCCCCEEEEECCCCCcCcCCcceec
Confidence 89999999999999 7887777777654
No 118
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.26 E-value=0.014 Score=42.80 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=40.6
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------C--CCCCCCCCcEEEEEECCEEEe
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------I--PNYPDKNLPTLFIYFEGKMQS 209 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~--~~y~v~~LPTllvYk~G~~v~ 209 (228)
|+.|+.+.+.|++|+.++.++.|..+|.+.- . ..++...+|+++ .||+.++
T Consensus 11 C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig 70 (85)
T PRK11200 11 CPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG 70 (85)
T ss_pred ChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc
Confidence 9999999999999999888888888887641 1 234568999975 5998754
No 119
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.12 E-value=0.023 Score=45.66 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=49.7
Q ss_pred CceEEEEe-----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCC------------------------CCCCCCCCCC-
Q psy14385 149 GIWVVLHF-----IPLCSLINNHLSELAAKF--PTTKFIKSISTT------------------------CIPNYPDKNL- 196 (228)
Q Consensus 149 ~~~VVVhf-----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~------------------------~~~~y~v~~L- 196 (228)
++++||+| |+.|....+.|.++++++ .++.|+-|..+. ....|++...
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 109 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEK 109 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCccc
Confidence 35677777 788999999999999888 358888887653 0134555443
Q ss_pred -----------cEEEEE-ECCEEEeEEeCccc
Q psy14385 197 -----------PTLFIY-FEGKMQSQMVGPDE 216 (228)
Q Consensus 197 -----------PTllvY-k~G~~v~~lvG~~~ 216 (228)
|+.+++ ++|.++..+.|+..
T Consensus 110 ~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~ 141 (154)
T PRK09437 110 KFMGKTYDGIHRISFLIDADGKIEHVFDKFKT 141 (154)
T ss_pred ccccccccCcceEEEEECCCCEEEEEEcCCCc
Confidence 666666 69999999999754
No 120
>KOG4277|consensus
Probab=95.89 E-value=0.0064 Score=56.27 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=50.5
Q ss_pred CceEEEEe---ccchHHHHHHHHHHHHhCC----CcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEe
Q psy14385 149 GIWVVLHF---IPLCSLINNHLSELAAKFP----TTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQS 209 (228)
Q Consensus 149 ~~~VVVhf---~~~C~~l~~~L~~LA~kyp----~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~ 209 (228)
+.|.|=++ |..|+.+.|++.++.-... -+|.-|++++.. +..|++++.||+.+||+|-.++
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~d 114 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAID 114 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeee
Confidence 46755555 9999999999999877654 378999999984 4789999999999999987664
No 121
>smart00594 UAS UAS domain.
Probab=95.88 E-value=0.076 Score=41.69 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=46.6
Q ss_pred hhHHHHHHhcCC-CceEEEEe----ccchHHHHHH------HHHHHHhCCCcEEEEEeCCC-----CCCCCCCCCCcEEE
Q psy14385 137 DTYVQEVNNAGE-GIWVVLHF----IPLCSLINNH------LSELAAKFPTTKFIKSISTT-----CIPNYPDKNLPTLF 200 (228)
Q Consensus 137 edf~~eV~~a~~-~~~VVVhf----~~~C~~l~~~------L~~LA~kyp~~KFvkI~ad~-----~~~~y~v~~LPTll 200 (228)
..|.+.+..+.+ +++++|+| |+.|..|+.. +.++-.+ +.-++.++++. .+..|.+.++|+++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~ 91 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVA 91 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEE
Confidence 344444433321 35777777 9999998764 2222222 35555677664 35889999999999
Q ss_pred EEE-CC-----EEEeEEeCc
Q psy14385 201 IYF-EG-----KMQSQMVGP 214 (228)
Q Consensus 201 vYk-~G-----~~v~~lvG~ 214 (228)
++. +| .++.++.|.
T Consensus 92 ~l~~~~g~~~~~~~~~~~G~ 111 (122)
T smart00594 92 IVDPRTGQRVIEWVGVVEGE 111 (122)
T ss_pred EEecCCCceeEEEeccccCC
Confidence 994 44 345555443
No 122
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.84 E-value=0.047 Score=49.08 Aligned_cols=63 Identities=13% Similarity=0.202 Sum_probs=47.3
Q ss_pred eEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC------------CCCCCCCCCcEEEEEECCEEEeEEeC
Q psy14385 151 WVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC------------IPNYPDKNLPTLFIYFEGKMQSQMVG 213 (228)
Q Consensus 151 ~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~------------~~~y~v~~LPTllvYk~G~~v~~lvG 213 (228)
+-+++| |+.|..+.++|..+|.+|. .+..|.+|..-. +..+++..+|++++..-....-.-||
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~ 231 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSPLA 231 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEEEe
Confidence 556666 9999999999999999996 577777776632 24788999999988776643333333
No 123
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=95.68 E-value=0.096 Score=42.49 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=59.2
Q ss_pred HhccCCCceEEeChhhHHHHHHhcCCCce-EEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCC
Q psy14385 123 AEKSRFGRVLEINGDTYVQEVNNAGEGIW-VVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPD 193 (228)
Q Consensus 123 ~~~~~fG~V~eIs~edf~~eV~~a~~~~~-VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v 193 (228)
.....+..|.++|.+++..... .+ .+ +++.| ......+...|..+|++|.+ +.|+.++++.. ...|++
T Consensus 71 I~~~~~P~v~~~t~~n~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i 147 (184)
T PF13848_consen 71 IKKNSFPLVPELTPENFEKLFS-SP--KPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGI 147 (184)
T ss_dssp HHHHSSTSCEEESTTHHHHHHS-TS--SEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTT
T ss_pred HHHhccccccccchhhHHHHhc-CC--CceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCC
Confidence 3345688899999888776554 32 34 44444 45778888999999999976 89999999953 356776
Q ss_pred C--CCcEEEEEE
Q psy14385 194 K--NLPTLFIYF 203 (228)
Q Consensus 194 ~--~LPTllvYk 203 (228)
. .+|+++++.
T Consensus 148 ~~~~~P~~vi~~ 159 (184)
T PF13848_consen 148 DEDDLPALVIFD 159 (184)
T ss_dssp TTSSSSEEEEEE
T ss_pred CCccCCEEEEEE
Confidence 6 999999999
No 124
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.65 E-value=0.058 Score=52.22 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=45.0
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEE
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQ 208 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v 208 (228)
||.|...-..+.++|..+|++.+-.|++... ..+|++.++|++++ ||+.+
T Consensus 128 Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~ 180 (517)
T PRK15317 128 CHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF 180 (517)
T ss_pred CCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE
Confidence 9999999999999999999999999998875 58999999999965 77654
No 125
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=95.61 E-value=0.02 Score=40.85 Aligned_cols=55 Identities=20% Similarity=0.380 Sum_probs=40.0
Q ss_pred EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC--------CCCCCCCCCcEEEEEECCEEEe
Q psy14385 152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC--------IPNYPDKNLPTLFIYFEGKMQS 209 (228)
Q Consensus 152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~--------~~~y~v~~LPTllvYk~G~~v~ 209 (228)
|+++. ||.|+.+.+.|.++.-. +...|+.++.+.. ...++...+|++ |-+|+.++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~ig 66 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFIG 66 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEc
Confidence 34555 99999999999998832 2367888876532 344688899997 56887654
No 126
>PTZ00056 glutathione peroxidase; Provisional
Probab=95.40 E-value=0.073 Score=45.58 Aligned_cols=36 Identities=8% Similarity=0.071 Sum_probs=31.0
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeC
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIS 184 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~a 184 (228)
+++|||+| |++|+.-.+.|.+|+++|. ++.|+-|+.
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 46788888 9999999999999999996 488888864
No 127
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.30 E-value=0.088 Score=47.17 Aligned_cols=58 Identities=9% Similarity=0.138 Sum_probs=46.1
Q ss_pred eEEEEe----ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC------------CCCCCCCCCcEEEEEECCEEE
Q psy14385 151 WVVLHF----IPLCSLINNHLSELAAKFP-TTKFIKSISTTC------------IPNYPDKNLPTLFIYFEGKMQ 208 (228)
Q Consensus 151 ~VVVhf----~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~------------~~~y~v~~LPTllvYk~G~~v 208 (228)
|-+++| |+.|..+.++|..+|.+|. .+..|.+|..-. ..++++..+|++++..-....
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS 219 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence 566666 9999999999999999996 677788876432 246889999999998776533
No 128
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.29 E-value=0.09 Score=50.93 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEE
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQ 208 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v 208 (228)
||.|...-..+.++|..+|++.+-.|++... ..+|++..+|++++ ||+.+
T Consensus 129 Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~ 181 (515)
T TIGR03140 129 CQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF 181 (515)
T ss_pred CCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE
Confidence 9999999999999999999999988998874 58999999999976 67644
No 129
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.25 E-value=0.057 Score=42.44 Aligned_cols=79 Identities=9% Similarity=0.125 Sum_probs=49.4
Q ss_pred Ee-ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCC-------CCCCCCCCC-CcE
Q psy14385 133 EI-NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTT-------CIPNYPDKN-LPT 198 (228)
Q Consensus 133 eI-s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~-------~~~~y~v~~-LPT 198 (228)
+| +.+++.+.+.+ +...+|+++= |+-+......|+..+...++ +.++-++.-. +++.|+|+- -|-
T Consensus 3 ~L~t~eql~~i~~~-S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 3 PLTTEEQLEEILEE-SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp E--SHHHHHHHHHH----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred ccCCHHHHHHHHHh-cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 46 44555555544 4456666644 77777788888888888886 8877777654 358889875 499
Q ss_pred EEEEECCEEEeEEe
Q psy14385 199 LFIYFEGKMQSQMV 212 (228)
Q Consensus 199 llvYk~G~~v~~lv 212 (228)
+|+++||+++..-.
T Consensus 82 ~ili~~g~~v~~aS 95 (105)
T PF11009_consen 82 VILIKNGKVVWHAS 95 (105)
T ss_dssp EEEEETTEEEEEEE
T ss_pred EEEEECCEEEEECc
Confidence 99999999998753
No 130
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=95.21 E-value=0.014 Score=42.54 Aligned_cols=55 Identities=20% Similarity=0.381 Sum_probs=39.5
Q ss_pred CceEEEEe----ccchHHHHHHH---HHHHHhC-CCcEEEEEeCCCCCC--CCCCCCCcEEEEEE
Q psy14385 149 GIWVVLHF----IPLCSLINNHL---SELAAKF-PTTKFIKSISTTCIP--NYPDKNLPTLFIYF 203 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L---~~LA~ky-p~~KFvkI~ad~~~~--~y~v~~LPTllvYk 203 (228)
+++|+|+| |+.|+.|...+ ..+.+.+ .+.-+++++.+.-.. .+....+|+++++.
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDRQGYPTFFFLD 81 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence 47999999 99999999887 4454422 567888999876311 12225699999984
No 131
>KOG3425|consensus
Probab=95.10 E-value=0.12 Score=41.78 Aligned_cols=67 Identities=18% Similarity=0.339 Sum_probs=50.2
Q ss_pred hhHHHHHHhcCCCceEEEEe------------ccchHHHHHHHHHHHHhCC-CcEEEEEeCCCC------------CCCC
Q psy14385 137 DTYVQEVNNAGEGIWVVLHF------------IPLCSLINNHLSELAAKFP-TTKFIKSISTTC------------IPNY 191 (228)
Q Consensus 137 edf~~eV~~a~~~~~VVVhf------------~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~------------~~~y 191 (228)
+.|.+.+.+..++..++|.| ||.|..-.|++..--+..| +++|+.+.+-.- .+++
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~ 92 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI 92 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc
Confidence 55666665543445577777 9999999999998777776 599999987652 1333
Q ss_pred CCCCCcEEEEEEC
Q psy14385 192 PDKNLPTLFIYFE 204 (228)
Q Consensus 192 ~v~~LPTllvYk~ 204 (228)
..++|||+=|++
T Consensus 93 -lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 93 -LTAVPTLLRWKR 104 (128)
T ss_pred -eeecceeeEEcC
Confidence 589999999996
No 132
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.08 E-value=0.11 Score=50.83 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=45.0
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEE
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQ 208 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v 208 (228)
|+.|..+...+.++|...|++..-.|++... +++|++.++|++++ ||+.+
T Consensus 488 C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~ 540 (555)
T TIGR03143 488 CTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV 540 (555)
T ss_pred CCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEE
Confidence 9999999999999999999999988998875 57999999999987 77755
No 133
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=94.92 E-value=0.14 Score=42.30 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=49.3
Q ss_pred CceEEEEe-----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC--------------------------CCCCCCCCCc
Q psy14385 149 GIWVVLHF-----IPLCSLINNHLSELAAKFPTTKFIKSISTTC--------------------------IPNYPDKNLP 197 (228)
Q Consensus 149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~--------------------------~~~y~v~~LP 197 (228)
+++|||+| |++|..-.+.|.+++.+|.++.++-|..+.. ...|++...|
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~ 123 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAE 123 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecc
Confidence 45788888 8999999999999999998888888877641 0234555555
Q ss_pred ---------EEEEE-ECCEEEeEEeCcc
Q psy14385 198 ---------TLFIY-FEGKMQSQMVGPD 215 (228)
Q Consensus 198 ---------TllvY-k~G~~v~~lvG~~ 215 (228)
+.++. ++|.++...++..
T Consensus 124 ~~~~g~~~r~tfvId~~G~I~~~~~~~~ 151 (167)
T PRK00522 124 GPLKGLLARAVFVLDENNKVVYSELVPE 151 (167)
T ss_pred cccCCceeeEEEEECCCCeEEEEEECCC
Confidence 55555 5888888877644
No 134
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=94.85 E-value=0.14 Score=45.34 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=30.7
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeC
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIS 184 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~a 184 (228)
+++|||+| |++|....+.|.+|.++|. ++.|+-|+.
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~ 140 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPC 140 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 35778877 9999999999999999996 478888875
No 135
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=94.81 E-value=0.15 Score=41.12 Aligned_cols=35 Identities=11% Similarity=0.014 Sum_probs=29.6
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeC
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIS 184 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~a 184 (228)
+++|||+| |+ |+.-.+.|.+|+++|. ++.|+-|+.
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~ 62 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPC 62 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 46888888 99 9999999999999995 588887754
No 136
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=94.71 E-value=0.18 Score=40.43 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=56.5
Q ss_pred ceEEeChhhHHHHHHhcCCCceEEEEecc-------ch-HHHHHHHHHHHHhCC-C-cEEEEEeCCCC---CCCCCCC--
Q psy14385 130 RVLEINGDTYVQEVNNAGEGIWVVLHFIP-------LC-SLINNHLSELAAKFP-T-TKFIKSISTTC---IPNYPDK-- 194 (228)
Q Consensus 130 ~V~eIs~edf~~eV~~a~~~~~VVVhf~~-------~C-~~l~~~L~~LA~kyp-~-~KFvkI~ad~~---~~~y~v~-- 194 (228)
.|.+++.++.+.+....+ .+.||-|.| .+ ..+...|..+|++|. . +.|+-+|++.- .+.|++.
T Consensus 3 ~~~~l~~~~~~~~~C~~~--~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~ 80 (130)
T cd02983 3 EIIELTSEDVFEETCEEK--QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGF 80 (130)
T ss_pred ceEEecCHHHHHhhccCC--CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCcc
Confidence 588998888877665442 466666622 13 457889999999995 4 79999999873 4778874
Q ss_pred CCcEEEEEECCEE
Q psy14385 195 NLPTLFIYFEGKM 207 (228)
Q Consensus 195 ~LPTllvYk~G~~ 207 (228)
..|+++++...+.
T Consensus 81 ~~P~v~i~~~~~~ 93 (130)
T cd02983 81 GYPAMVAINFRKM 93 (130)
T ss_pred CCCEEEEEecccC
Confidence 5999999988653
No 137
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=94.66 E-value=0.12 Score=40.35 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=29.5
Q ss_pred eEEEEe----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCC
Q psy14385 151 WVVLHF----IPLCSLINNHLSELAAKF--PTTKFIKSISTT 186 (228)
Q Consensus 151 ~VVVhf----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~ 186 (228)
.||++| |+.|+.-.+.|.++..+| .++.++-|..+.
T Consensus 26 ~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 26 VVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred EEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 455555 999999999999999998 468888887664
No 138
>KOG2603|consensus
Probab=94.58 E-value=0.14 Score=47.30 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=62.2
Q ss_pred ceEEeChhhHHHHHHhcCCCceEEEEe--------ccchHHHHHHHHHHHHhCC---------CcEEEEEeCCCCC---C
Q psy14385 130 RVLEINGDTYVQEVNNAGEGIWVVLHF--------IPLCSLINNHLSELAAKFP---------TTKFIKSISTTCI---P 189 (228)
Q Consensus 130 ~V~eIs~edf~~eV~~a~~~~~VVVhf--------~~~C~~l~~~L~~LA~kyp---------~~KFvkI~ad~~~---~ 189 (228)
.|+.++.+.|-.-++...++-.+||.| |.-|.-...-+..+|+-+. .+=|+.||.++.+ +
T Consensus 41 ~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq 120 (331)
T KOG2603|consen 41 GVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQ 120 (331)
T ss_pred CeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHH
Confidence 588999999999998666666788888 9999999999999998752 2348999999864 7
Q ss_pred CCCCCCCcEEEEE
Q psy14385 190 NYPDKNLPTLFIY 202 (228)
Q Consensus 190 ~y~v~~LPTllvY 202 (228)
.++..++|++.+|
T Consensus 121 ~l~ln~~P~l~~f 133 (331)
T KOG2603|consen 121 QLNLNNVPHLVLF 133 (331)
T ss_pred HhcccCCCeEEEe
Confidence 8999999999999
No 139
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=94.55 E-value=0.17 Score=41.69 Aligned_cols=70 Identities=23% Similarity=0.299 Sum_probs=51.3
Q ss_pred CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC-------------------------------CCC
Q psy14385 149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC-------------------------------IPN 190 (228)
Q Consensus 149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~-------------------------------~~~ 190 (228)
+++|||.| |+.|..-.+.|.+++.+|. ++.++-|..+.. ...
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 108 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD 108 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence 35788877 9999999999999999984 477776654420 123
Q ss_pred CCCC------CCcEEEEEE-CCEEEeEEeCccccC
Q psy14385 191 YPDK------NLPTLFIYF-EGKMQSQMVGPDEFR 218 (228)
Q Consensus 191 y~v~------~LPTllvYk-~G~~v~~lvG~~~~G 218 (228)
|++. .+|+.+++. +|.++...++....+
T Consensus 109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~ 143 (173)
T cd03015 109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVG 143 (173)
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEecCCCCC
Confidence 5554 467777776 899999998876554
No 140
>PLN02412 probable glutathione peroxidase
Probab=94.52 E-value=0.21 Score=41.35 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=29.9
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeC
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIS 184 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~a 184 (228)
+++|||+| |++|+.-.+.|.+|.++|. ++.++-|++
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~ 70 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPC 70 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecc
Confidence 35788877 9999998999999999996 478888764
No 141
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=94.51 E-value=0.12 Score=37.93 Aligned_cols=72 Identities=11% Similarity=0.050 Sum_probs=50.8
Q ss_pred EEeChhhHHHHHHhcCCCceEEEEeccchHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCCCCCCCCcEEEEEECC
Q psy14385 132 LEINGDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKFP-TTKFIKSISTTCIPNYPDKNLPTLFIYFEG 205 (228)
Q Consensus 132 ~eIs~edf~~eV~~a~~~~~VVVhf~~~C~~l~~~L~~LA~kyp-~~KFvkI~ad~~~~~y~v~~LPTllvYk~G 205 (228)
.+|+..+.++.+.... ..+||-+|...|......|..+|..+. .+.|.-+...+....|.+. -|++++|+.+
T Consensus 2 ~~i~s~~~l~~~~~~~-~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~~~~~-~~~i~l~~~~ 74 (97)
T cd02981 2 KELTSKEELEKFLDKD-DVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAKKLKVK-PGSVVLFKPF 74 (97)
T ss_pred eecCCHHHHHHHhccC-CeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEChHHHHHHcCCC-CCceEEeCCc
Confidence 4675555555544443 345555556667789999999999995 7999887766655666654 5999999886
No 142
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=94.45 E-value=0.17 Score=39.27 Aligned_cols=68 Identities=26% Similarity=0.386 Sum_probs=49.8
Q ss_pred CceEEEEe-----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCC----------C---------------CCCCCCCCC
Q psy14385 149 GIWVVLHF-----IPLCSLINNHLSELAAKF--PTTKFIKSISTT----------C---------------IPNYPDKNL 196 (228)
Q Consensus 149 ~~~VVVhf-----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~----------~---------------~~~y~v~~L 196 (228)
++++||.| |+.|....+.|.+++.+| .++.|+-|..+. . ...|++...
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~~ 101 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLIE 101 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCccc
Confidence 35677766 999999999999999997 568888887753 1 023455555
Q ss_pred c---------EEEEEE-CCEEEeEEeCccc
Q psy14385 197 P---------TLFIYF-EGKMQSQMVGPDE 216 (228)
Q Consensus 197 P---------TllvYk-~G~~v~~lvG~~~ 216 (228)
| ++++.. +|.++.+.+|...
T Consensus 102 ~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 102 KSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred cccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 5 666554 6999999998775
No 143
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=94.39 E-value=0.069 Score=39.50 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=38.9
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCC-------CCCCC--CCCCCcEEEEEECCEEE
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTT-------CIPNY--PDKNLPTLFIYFEGKMQ 208 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~-------~~~~y--~v~~LPTllvYk~G~~v 208 (228)
||.|..+...|.++..+++.+.|..++.+. ....+ ....+|+++ .+|+.+
T Consensus 10 Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~i 68 (86)
T TIGR02183 10 CPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHV 68 (86)
T ss_pred CccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEe
Confidence 999999999999999998888888887763 11222 347999994 588764
No 144
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=94.20 E-value=0.17 Score=47.57 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=56.5
Q ss_pred CCceEEeChhhHHHHHHhcCCCceEEEEe---ccchH------HHHHHHHHHHHhC---CCcEEEEEeCCC---CCCCCC
Q psy14385 128 FGRVLEINGDTYVQEVNNAGEGIWVVLHF---IPLCS------LINNHLSELAAKF---PTTKFIKSISTT---CIPNYP 192 (228)
Q Consensus 128 fG~V~eIs~edf~~eV~~a~~~~~VVVhf---~~~C~------~l~~~L~~LA~ky---p~~KFvkI~ad~---~~~~y~ 192 (228)
.-+|..++..+|.+.+.+.. .++|+| .+..+ .|..++-+||++- .++.|.-||+.+ .+.+++
T Consensus 33 kDRVi~LneKNfk~~lKkyd---~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLg 109 (383)
T PF01216_consen 33 KDRVIDLNEKNFKRALKKYD---VLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLG 109 (383)
T ss_dssp S--CEEE-TTTHHHHHHH-S---EEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT
T ss_pred ccceEEcchhHHHHHHHhhc---EEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcC
Confidence 44699999999999888764 555666 22222 2456566777764 479999999998 368999
Q ss_pred CCCCcEEEEEECCEEEeEE
Q psy14385 193 DKNLPTLFIYFEGKMQSQM 211 (228)
Q Consensus 193 v~~LPTllvYk~G~~v~~l 211 (228)
+.-.+++-||++|..+.--
T Consensus 110 v~E~~SiyVfkd~~~IEyd 128 (383)
T PF01216_consen 110 VEEEGSIYVFKDGEVIEYD 128 (383)
T ss_dssp --STTEEEEEETTEEEEE-
T ss_pred ccccCcEEEEECCcEEEec
Confidence 9999999999999988643
No 145
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=94.02 E-value=0.24 Score=39.10 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=48.3
Q ss_pred ceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC-----------------C---------CCCCCC--
Q psy14385 150 IWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC-----------------I---------PNYPDK-- 194 (228)
Q Consensus 150 ~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~-----------------~---------~~y~v~-- 194 (228)
.++||.| |+.|..-.+.|.+++++|. ++.|+-|..+.. . ..|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 4566655 9999999999999999995 588888876530 0 123443
Q ss_pred --CCc--EEEEE-ECCEEEeEEeCcccc
Q psy14385 195 --NLP--TLFIY-FEGKMQSQMVGPDEF 217 (228)
Q Consensus 195 --~LP--TllvY-k~G~~v~~lvG~~~~ 217 (228)
++| +.+++ ++|+++....|..-.
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~~~ 136 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDDGE 136 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCCcc
Confidence 333 66666 589999999997733
No 146
>KOG3414|consensus
Probab=93.84 E-value=0.41 Score=39.12 Aligned_cols=74 Identities=20% Similarity=0.285 Sum_probs=56.3
Q ss_pred ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC---CCCCCCCCCcEEEEEECCE
Q psy14385 135 NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC---IPNYPDKNLPTLFIYFEGK 206 (228)
Q Consensus 135 s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~ 206 (228)
|..+-.+.|.... ...||+.| -|.|-.|+..|..+|..-.+ +..+-++.++. ..-|.....||+++|.|++
T Consensus 10 s~~~VdqaI~~t~-~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~k 88 (142)
T KOG3414|consen 10 SGWEVDQAILSTE-ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK 88 (142)
T ss_pred cHHHHHHHHhccc-ceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence 3445555555443 47899999 89999999999999998765 44555666663 4779999999999999987
Q ss_pred EEe
Q psy14385 207 MQS 209 (228)
Q Consensus 207 ~v~ 209 (228)
-+.
T Consensus 89 Hmk 91 (142)
T KOG3414|consen 89 HMK 91 (142)
T ss_pred eEE
Confidence 554
No 147
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=93.56 E-value=0.089 Score=35.57 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=37.4
Q ss_pred EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCC-------CCCCCCCCcEEEEEECCEEEeEE
Q psy14385 152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTCI-------PNYPDKNLPTLFIYFEGKMQSQM 211 (228)
Q Consensus 152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~-------~~y~v~~LPTllvYk~G~~v~~l 211 (228)
|+++. |+.|+.+...|..+. +.|..+|..... ...+...+|++ |.+|..++.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~igg~ 64 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFIGGY 64 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEecH
Confidence 45555 999999999998775 667777776532 23466788977 5588777644
No 148
>PRK15000 peroxidase; Provisional
Probab=93.45 E-value=0.32 Score=41.68 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=55.8
Q ss_pred CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC-------------------------------CCC
Q psy14385 149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC-------------------------------IPN 190 (228)
Q Consensus 149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~-------------------------------~~~ 190 (228)
+.|||++| |+.|..-.+.|.+++.+|. +++++-|..+.. +..
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ 113 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKA 113 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHH
Confidence 46899998 8999999999999999985 577777766620 022
Q ss_pred CCCC------CCcEEEEEE-CCEEEeEEeCccccCC
Q psy14385 191 YPDK------NLPTLFIYF-EGKMQSQMVGPDEFRT 219 (228)
Q Consensus 191 y~v~------~LPTllvYk-~G~~v~~lvG~~~~G~ 219 (228)
|++. .+|+.+++. +|.++...+|....|.
T Consensus 114 ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr 149 (200)
T PRK15000 114 YGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGR 149 (200)
T ss_pred cCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCC
Confidence 5565 589988888 8999999999887773
No 149
>PTZ00256 glutathione peroxidase; Provisional
Probab=93.30 E-value=0.31 Score=40.86 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=24.6
Q ss_pred ccchHHHHHHHHHHHHhCC--CcEEEEEeC
Q psy14385 157 IPLCSLINNHLSELAAKFP--TTKFIKSIS 184 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp--~~KFvkI~a 184 (228)
|++|+.--+.|.++.++|. ++.|+-|+.
T Consensus 53 Cp~C~~e~p~l~~l~~~~~~~gv~vv~vs~ 82 (183)
T PTZ00256 53 CGLTSDHYTQLVELYKQYKSQGLEILAFPC 82 (183)
T ss_pred CCchHHHHHHHHHHHHHHhhCCcEEEEEec
Confidence 9999999999999999996 588888863
No 150
>KOG2501|consensus
Probab=93.04 E-value=0.38 Score=40.43 Aligned_cols=62 Identities=27% Similarity=0.382 Sum_probs=41.8
Q ss_pred CceEEEEe----ccchHHHHHHH----HHHHHhCCC--cEEEEEeCCC--------------------------CCCCCC
Q psy14385 149 GIWVVLHF----IPLCSLINNHL----SELAAKFPT--TKFIKSISTT--------------------------CIPNYP 192 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L----~~LA~kyp~--~KFvkI~ad~--------------------------~~~~y~ 192 (228)
|+.|.+.| |++|+.+-|+| +++...+.. +-||.-|.+. +...|.
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~ 112 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYE 112 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcc
Confidence 46788888 99999865554 556666543 5566655542 124789
Q ss_pred CCCCcEEEEEE-CCEEEeE
Q psy14385 193 DKNLPTLFIYF-EGKMQSQ 210 (228)
Q Consensus 193 v~~LPTllvYk-~G~~v~~ 210 (228)
++.+|++.+.+ +|+.+..
T Consensus 113 v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 113 VKGIPALVILKPDGTVVTE 131 (157)
T ss_pred cCcCceeEEecCCCCEehH
Confidence 99999987665 5766643
No 151
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=93.02 E-value=0.38 Score=40.46 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=49.2
Q ss_pred CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC----------------------------CCCCCCC
Q psy14385 149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTT----------------------------CIPNYPD 193 (228)
Q Consensus 149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~----------------------------~~~~y~v 193 (228)
|++|||+| |+.|..-.+.|.++..+|. ++.++-|..+. ....|++
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv 110 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV 110 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence 35788888 9999999999998888873 56776665442 0124555
Q ss_pred C------CCcEEEEE-ECCEEEeEEeCcccc
Q psy14385 194 K------NLPTLFIY-FEGKMQSQMVGPDEF 217 (228)
Q Consensus 194 ~------~LPTllvY-k~G~~v~~lvG~~~~ 217 (228)
. ..|+.+++ ++|.++...++....
T Consensus 111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~ 141 (187)
T TIGR03137 111 LIEEAGLADRGTFVIDPEGVIQAVEITDNGI 141 (187)
T ss_pred cccCCCceeeEEEEECCCCEEEEEEEeCCCC
Confidence 4 35877777 689999988765543
No 152
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=93.00 E-value=0.21 Score=35.47 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=38.0
Q ss_pred EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCC--------CCCCCCCCcEEEEEECCEEEe
Q psy14385 152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTCI--------PNYPDKNLPTLFIYFEGKMQS 209 (228)
Q Consensus 152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~--------~~y~v~~LPTllvYk~G~~v~ 209 (228)
|+++- ||.|..+.+.|+.+... ..++.++.+... ..++...+|++ |-+|..++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ig 65 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK---PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFIG 65 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC---cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEc
Confidence 44444 99999999999998874 456677765431 33467899996 77887754
No 153
>PHA03050 glutaredoxin; Provisional
Probab=92.99 E-value=0.16 Score=39.58 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=46.4
Q ss_pred hhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCC--C------CCCCCCCCCCcEEEEEECC
Q psy14385 137 DTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSIST--T------CIPNYPDKNLPTLFIYFEG 205 (228)
Q Consensus 137 edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad--~------~~~~y~v~~LPTllvYk~G 205 (228)
.+|++.+.+.+ .|+|+- ||.|+.....|..+.-.++....+.|+.. . +....+.+.+|++ |-+|
T Consensus 3 ~~~v~~~i~~~---~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g 77 (108)
T PHA03050 3 EEFVQQRLANN---KVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGK 77 (108)
T ss_pred HHHHHHHhccC---CEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECC
Confidence 45677666553 466665 99999999999998776665555555531 1 1233467899998 6678
Q ss_pred EEEeE
Q psy14385 206 KMQSQ 210 (228)
Q Consensus 206 ~~v~~ 210 (228)
+.++.
T Consensus 78 ~~iGG 82 (108)
T PHA03050 78 TSIGG 82 (108)
T ss_pred EEEeC
Confidence 76643
No 154
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=0.23 Score=42.04 Aligned_cols=68 Identities=13% Similarity=0.248 Sum_probs=50.9
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHH--hC--CCcEEEEEeCCC-------------------CCCCCCCCCCcEEEE
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAA--KF--PTTKFIKSISTT-------------------CIPNYPDKNLPTLFI 201 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~--ky--p~~KFvkI~ad~-------------------~~~~y~v~~LPTllv 201 (228)
+++.++.| |+.|..|...+..--+ +| ++.-++.++++. .+..|.+++.||+++
T Consensus 42 ~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvF 121 (182)
T COG2143 42 DKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVF 121 (182)
T ss_pred CcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEE
Confidence 56888888 9999999887644322 22 456666666553 246799999999999
Q ss_pred EEC-CEEEeEEeCccc
Q psy14385 202 YFE-GKMQSQMVGPDE 216 (228)
Q Consensus 202 Yk~-G~~v~~lvG~~~ 216 (228)
|.. |+.+.++-|..+
T Consensus 122 fdk~Gk~Il~lPGY~p 137 (182)
T COG2143 122 FDKTGKTILELPGYMP 137 (182)
T ss_pred EcCCCCEEEecCCCCC
Confidence 976 799999988753
No 155
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=92.83 E-value=0.37 Score=32.71 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=33.0
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCC----CCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPN----YPDKNLPTLFIYFEGKMQSQMVGPD 215 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~----y~v~~LPTllvYk~G~~v~~lvG~~ 215 (228)
|+.|..+...|... ++.|..++.+.. .+. .+...+|++++ +|. .+.|+.
T Consensus 10 c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~~ 65 (73)
T cd02976 10 CPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGFR 65 (73)
T ss_pred ChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecCC
Confidence 99999998888763 456666666542 122 37899999976 553 455544
No 156
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=92.41 E-value=1.7 Score=35.57 Aligned_cols=72 Identities=21% Similarity=0.255 Sum_probs=52.5
Q ss_pred ChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCCC---CCCCCCCCcE-EEEEECC
Q psy14385 135 NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTCI---PNYPDKNLPT-LFIYFEG 205 (228)
Q Consensus 135 s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~~---~~y~v~~LPT-llvYk~G 205 (228)
|+-+--+.|... .++.||+.| -+.|-.|+.+|..+|.+-.. ..++-++.++.+ .-|... -|+ +++|.++
T Consensus 7 s~~~VDqAI~~e-~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rn 84 (133)
T PF02966_consen 7 SGWHVDQAILSE-EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRN 84 (133)
T ss_dssp SHHHHHHHHHH--SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETT
T ss_pred ccchHHHHHhcc-CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecC
Confidence 444555566554 368999999 89999999999999999755 667788998854 346776 665 6666688
Q ss_pred EEE
Q psy14385 206 KMQ 208 (228)
Q Consensus 206 ~~v 208 (228)
+-+
T Consensus 85 khm 87 (133)
T PF02966_consen 85 KHM 87 (133)
T ss_dssp EEE
T ss_pred eEE
Confidence 744
No 157
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=92.21 E-value=0.25 Score=42.36 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=47.3
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHh-CCCcEE---EEEeCCC--------------------------------CC
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAK-FPTTKF---IKSISTT--------------------------------CI 188 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~k-yp~~KF---vkI~ad~--------------------------------~~ 188 (228)
|+.+||+| |++|+.=.|.|..|+++ +|--+| +-||.++ ..
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~ 138 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVK 138 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHH
Confidence 46677777 99999999999999875 453111 2233332 11
Q ss_pred CCCCCCCCcEE--EEEECCEEEeEEeCcc
Q psy14385 189 PNYPDKNLPTL--FIYFEGKMQSQMVGPD 215 (228)
Q Consensus 189 ~~y~v~~LPTl--lvYk~G~~v~~lvG~~ 215 (228)
..|++.++|+. ++=++|+++...+|..
T Consensus 139 ~~~gv~~~P~T~fVIDk~GkVv~~~~G~l 167 (184)
T TIGR01626 139 NAWQLNSEDSAIIVLDKTGKVKFVKEGAL 167 (184)
T ss_pred HhcCCCCCCceEEEECCCCcEEEEEeCCC
Confidence 46788899544 7778899999999974
No 158
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=92.07 E-value=0.26 Score=37.31 Aligned_cols=38 Identities=32% Similarity=0.430 Sum_probs=32.9
Q ss_pred CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCC
Q psy14385 149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTT 186 (228)
Q Consensus 149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~ 186 (228)
+.++||.| |+.|..-.+.|.++..+|. ++.|+-|..+.
T Consensus 25 gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~ 69 (124)
T PF00578_consen 25 GKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDD 69 (124)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSS
T ss_pred CCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccc
Confidence 35788877 9999999999999999986 79999998874
No 159
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=92.06 E-value=1.3 Score=37.72 Aligned_cols=82 Identities=18% Similarity=0.347 Sum_probs=58.0
Q ss_pred CceEEeChhhHHHHHHhcCCCceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC--------------
Q psy14385 129 GRVLEINGDTYVQEVNNAGEGIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC-------------- 187 (228)
Q Consensus 129 G~V~eIs~edf~~eV~~a~~~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~-------------- 187 (228)
|....++-.+| .++|||++| |+.|..-.+.|..++.+|. ++.++-|..+..
T Consensus 19 g~~~~v~L~d~--------~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~ 90 (187)
T PRK10382 19 GEFIEVTEKDT--------EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIA 90 (187)
T ss_pred CcceEEEHHHh--------CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhcccc
Confidence 56666665555 235888887 9999999999999999983 567776665530
Q ss_pred --------------CCCCCC----CCC--cEEEEEE-CCEEEeEEeCccccC
Q psy14385 188 --------------IPNYPD----KNL--PTLFIYF-EGKMQSQMVGPDEFR 218 (228)
Q Consensus 188 --------------~~~y~v----~~L--PTllvYk-~G~~v~~lvG~~~~G 218 (228)
...|++ .++ |+.++.- +|.++...+.....|
T Consensus 91 ~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~ 142 (187)
T PRK10382 91 KIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIG 142 (187)
T ss_pred CCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCC
Confidence 134555 356 9888885 899988887655544
No 160
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=91.76 E-value=0.35 Score=37.73 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=30.1
Q ss_pred CceEEEEe----ccc-hHHHHHHHHHHHHhCCC-----cEEEEEeCC
Q psy14385 149 GIWVVLHF----IPL-CSLINNHLSELAAKFPT-----TKFIKSIST 185 (228)
Q Consensus 149 ~~~VVVhf----~~~-C~~l~~~L~~LA~kyp~-----~KFvkI~ad 185 (228)
++++||.| |++ |....+.|.+++++|.. ++|+-|..+
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 35788877 998 99999999999999853 888777653
No 161
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=90.92 E-value=0.37 Score=32.64 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=33.1
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEEECCEEE
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIYFEGKMQ 208 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvYk~G~~v 208 (228)
|+.|+.....|+. .++.|.-++.+.. ....+...+|++++ ||+.+
T Consensus 9 C~~C~~~~~~L~~-----~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 9 CPYCKKAKEFLDE-----KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp SHHHHHHHHHHHH-----TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred CcCHHHHHHHHHH-----cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 9999999999944 3366777776652 12238899999987 88764
No 162
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=89.95 E-value=0.63 Score=37.45 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=50.3
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeC--------CC--C----C-C----CCCC----------
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIS--------TT--C----I-P----NYPD---------- 193 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~a--------d~--~----~-~----~y~v---------- 193 (228)
|++|||.| |++|..--+.|.+++++|. ++.|+-|+. +. . + . .||+
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~~ 101 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGSE 101 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCCC
Confidence 45677767 9999999999999999995 588888874 11 0 1 1 1322
Q ss_pred ------------CCCc-----EEEEEECCEEEeEEeCcccc
Q psy14385 194 ------------KNLP-----TLFIYFEGKMQSQMVGPDEF 217 (228)
Q Consensus 194 ------------~~LP-----TllvYk~G~~v~~lvG~~~~ 217 (228)
..+| |++|=++|+++..+.|....
T Consensus 102 ~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~ 142 (153)
T TIGR02540 102 AEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPV 142 (153)
T ss_pred CCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCH
Confidence 1478 68888999999999886543
No 163
>PRK10329 glutaredoxin-like protein; Provisional
Probab=89.54 E-value=1.5 Score=32.22 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=35.8
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCC------CCCCCCCCcEEEEEECCEEEeEEeCccc
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTCI------PNYPDKNLPTLFIYFEGKMQSQMVGPDE 216 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~------~~y~v~~LPTllvYk~G~~v~~lvG~~~ 216 (228)
|+.|..+...|.+ .++.|-.+|.+.-. ...+...+|++++ +| ..+.|+..
T Consensus 11 Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~---~~~~Gf~~ 66 (81)
T PRK10329 11 CVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD---LSWSGFRP 66 (81)
T ss_pred CHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC---EEEecCCH
Confidence 9999999999965 35778777777522 2347789999965 55 34667753
No 164
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=89.52 E-value=0.89 Score=35.37 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=25.6
Q ss_pred eEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEE
Q psy14385 151 WVVLHF----IPLCSLINNHLSELAAKFPTTKFIKS 182 (228)
Q Consensus 151 ~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI 182 (228)
.+|+.| ||.|+.+.+.+..+..++++++++-.
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~ 42 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFK 42 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEE
Confidence 445544 99999999999999999988766544
No 165
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=89.31 E-value=0.89 Score=32.76 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=35.6
Q ss_pred eEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC------CCCCCCCCCcEEEEEECCEEEe
Q psy14385 151 WVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC------IPNYPDKNLPTLFIYFEGKMQS 209 (228)
Q Consensus 151 ~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~------~~~y~v~~LPTllvYk~G~~v~ 209 (228)
.|+|.- |+.|+.....|..+ ++.|..++.+.- ...++...+|.++ .||+.++
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~ig 69 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKLIG 69 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEEEc
Confidence 455544 99999999999753 456666666542 1335778999996 4887643
No 166
>PRK13189 peroxiredoxin; Provisional
Probab=88.33 E-value=2.4 Score=36.97 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=50.0
Q ss_pred CceEEEEe-----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCCC------------------------------CCCC
Q psy14385 149 GIWVVLHF-----IPLCSLINNHLSELAAKF--PTTKFIKSISTTC------------------------------IPNY 191 (228)
Q Consensus 149 ~~~VVVhf-----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~~------------------------------~~~y 191 (228)
++|||+.| |+.|..-.+.|..++.+| .+++++-|..+.. +..|
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~y 114 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKL 114 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHh
Confidence 46777755 999999999999999988 4677776655420 1234
Q ss_pred CCC-------CCcEEEEEE-CCEEEeEEeCccccCC
Q psy14385 192 PDK-------NLPTLFIYF-EGKMQSQMVGPDEFRT 219 (228)
Q Consensus 192 ~v~-------~LPTllvYk-~G~~v~~lvG~~~~G~ 219 (228)
++. .+|+.+|.. +|.+....++....|.
T Consensus 115 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr 150 (222)
T PRK13189 115 GMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGR 150 (222)
T ss_pred CCCccccCCCceeEEEEECCCCeEEEEEecCCCCCC
Confidence 433 568777776 8999888887665553
No 167
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=87.14 E-value=1.9 Score=30.23 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=33.2
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEEECCEEEe
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIYFEGKMQS 209 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvYk~G~~v~ 209 (228)
|+.|+.....|++. ++.|..++.+.- ....+...+|++ |.||+.++
T Consensus 11 C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~iG 63 (73)
T cd03027 11 CEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLVG 63 (73)
T ss_pred ChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 99999999999873 466666676652 133466788988 66887665
No 168
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=87.09 E-value=1.5 Score=30.87 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=34.0
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCC------CCCCCCCCcEEEEEECCEEEeEEeCccc
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTCI------PNYPDKNLPTLFIYFEGKMQSQMVGPDE 216 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~------~~y~v~~LPTllvYk~G~~v~~lvG~~~ 216 (228)
|+.|+.....|.+. ++.|-.+|.+... ...+...+|++++ +|. ..+.|+.+
T Consensus 9 Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~ 65 (72)
T TIGR02194 9 CVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRP 65 (72)
T ss_pred CHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCH
Confidence 99999999999753 5566666665421 2347789999855 453 24566653
No 169
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=86.64 E-value=1 Score=34.26 Aligned_cols=52 Identities=15% Similarity=0.161 Sum_probs=34.6
Q ss_pred eEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC----------CCCCCCCCCcEEEEEECCEEEe
Q psy14385 151 WVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTC----------IPNYPDKNLPTLFIYFEGKMQS 209 (228)
Q Consensus 151 ~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~----------~~~y~v~~LPTllvYk~G~~v~ 209 (228)
.|+|+- ||.|..+...|.++. +.|..++.+.. ....+...+|.+ |-+|+.++
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~iG 73 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLG-----VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLVG 73 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC-----CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEEc
Confidence 466666 999999999998764 33334444432 122357899997 77886664
No 170
>KOG1731|consensus
Probab=86.59 E-value=0.5 Score=47.00 Aligned_cols=77 Identities=14% Similarity=0.244 Sum_probs=58.7
Q ss_pred ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC----CCcEEEEEeCCC-----CCCCCCCCCC
Q psy14385 130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF----PTTKFIKSISTT-----CIPNYPDKNL 196 (228)
Q Consensus 130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky----p~~KFvkI~ad~-----~~~~y~v~~L 196 (228)
.|++++.+.|...|..+. ..-+|.| |+.|+...|+++.+|..- |-++...||.-+ ....|.|+..
T Consensus 40 ~ii~Ld~~tf~~~v~~~~--~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~ 117 (606)
T KOG1731|consen 40 PIIELDVDTFNAAVFGSR--KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY 117 (606)
T ss_pred CeEEeehhhhHHHhcccc--hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence 588899999999997653 2345555 999999999999999864 335666666432 2378999999
Q ss_pred cEEEEEECCEEE
Q psy14385 197 PTLFIYFEGKMQ 208 (228)
Q Consensus 197 PTllvYk~G~~v 208 (228)
|||-.|.-+-.-
T Consensus 118 Ptlryf~~~~~~ 129 (606)
T KOG1731|consen 118 PTLRYFPPDSQN 129 (606)
T ss_pred ceeeecCCcccc
Confidence 999999876443
No 171
>PRK13190 putative peroxiredoxin; Provisional
Probab=86.51 E-value=2.7 Score=35.85 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=49.2
Q ss_pred CceEEEE-e----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC------------------------------CCCC
Q psy14385 149 GIWVVLH-F----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC------------------------------IPNY 191 (228)
Q Consensus 149 ~~~VVVh-f----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~------------------------------~~~y 191 (228)
+.|||++ | |+.|..-.+.|.+++.+|. +++++-|..+.. +..|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 3577775 4 9999998888988888884 577776655420 1235
Q ss_pred CCC------CCcEEEEEE-CCEEEeEEeCccccC
Q psy14385 192 PDK------NLPTLFIYF-EGKMQSQMVGPDEFR 218 (228)
Q Consensus 192 ~v~------~LPTllvYk-~G~~v~~lvG~~~~G 218 (228)
++. .+|+++++. +|.+....++....|
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~g 140 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETG 140 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCC
Confidence 553 479999995 788887776665555
No 172
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=86.09 E-value=3.2 Score=40.72 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=44.4
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCC---CCCCCCCCCCcEEEEEE-CCEEE-eEEeC
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTT---CIPNYPDKNLPTLFIYF-EGKMQ-SQMVG 213 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~---~~~~y~v~~LPTllvYk-~G~~v-~~lvG 213 (228)
|+.|.-+...|+++|.--+.+++...+..+ ..+.|++..+|++.+++ +|+-. =+|.|
T Consensus 378 ~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g 439 (555)
T TIGR03143 378 NEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHG 439 (555)
T ss_pred chhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEe
Confidence 679999999999999988988887666432 45889999999999995 66432 33444
No 173
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=84.77 E-value=3.3 Score=31.34 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=40.5
Q ss_pred hHHHHHHhcCCCceEEEEe--------ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEE
Q psy14385 138 TYVQEVNNAGEGIWVVLHF--------IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIY 202 (228)
Q Consensus 138 df~~eV~~a~~~~~VVVhf--------~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvY 202 (228)
++++.+.+.+ .|||+- ||.|..+...|..+ ++.|..++.... ....+...+|.+ |
T Consensus 3 ~~v~~~i~~~---~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v--f 72 (97)
T TIGR00365 3 ERIKEQIKEN---PVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL--Y 72 (97)
T ss_pred HHHHHHhccC---CEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE--E
Confidence 4455554443 466663 99999999999875 345666666542 123456788987 5
Q ss_pred ECCEEEeE
Q psy14385 203 FEGKMQSQ 210 (228)
Q Consensus 203 k~G~~v~~ 210 (228)
.+|+.++.
T Consensus 73 i~g~~iGG 80 (97)
T TIGR00365 73 VKGEFVGG 80 (97)
T ss_pred ECCEEEeC
Confidence 78876643
No 174
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=84.36 E-value=8 Score=34.86 Aligned_cols=70 Identities=13% Similarity=0.036 Sum_probs=50.8
Q ss_pred CceEEEEe-----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCCC-------------------------------CCC
Q psy14385 149 GIWVVLHF-----IPLCSLINNHLSELAAKF--PTTKFIKSISTTC-------------------------------IPN 190 (228)
Q Consensus 149 ~~~VVVhf-----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~~-------------------------------~~~ 190 (228)
+.+||++| |+.|..-.+.|.++..+| .+++++-|..+.. +..
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka 177 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS 177 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence 35788887 999999999999998888 3567766655430 134
Q ss_pred CCCC-----CCcEEEEEE-CCEEEeEEeCccccC
Q psy14385 191 YPDK-----NLPTLFIYF-EGKMQSQMVGPDEFR 218 (228)
Q Consensus 191 y~v~-----~LPTllvYk-~G~~v~~lvG~~~~G 218 (228)
|++. .+|+.++.. +|.++...+.....|
T Consensus 178 yGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~g 211 (261)
T PTZ00137 178 FGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLG 211 (261)
T ss_pred cCCCCcCCceecEEEEECCCCEEEEEEEeCCCCC
Confidence 5553 479999986 899998887655555
No 175
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=84.33 E-value=2.1 Score=31.76 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=34.8
Q ss_pred eEEEEe--------ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEEECCEEEe
Q psy14385 151 WVVLHF--------IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIYFEGKMQS 209 (228)
Q Consensus 151 ~VVVhf--------~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvYk~G~~v~ 209 (228)
.|||+- |+.|..+...|..+- +.|..++...- ....+...+|++ |.+|+.++
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-----i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~iG 75 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLG-----VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELVG 75 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcC-----CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEEe
Confidence 566663 889999888887764 45555555431 233567789997 56887653
No 176
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=84.29 E-value=0.94 Score=36.60 Aligned_cols=51 Identities=20% Similarity=0.205 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCC-CcEEEEEeCCCCCCCCCCCCCcEEEEEECCEE-EeEEeC
Q psy14385 162 LINNHLSELAAKFP-TTKFIKSISTTCIPNYPDKNLPTLFIYFEGKM-QSQMVG 213 (228)
Q Consensus 162 ~l~~~L~~LA~kyp-~~KFvkI~ad~~~~~y~v~~LPTllvYk~G~~-v~~lvG 213 (228)
.+...+.++|+++. ++.|+.+........+++.. |++++||++.. ...+.|
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~ 59 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTFNEELAKKYGIKE-PTIVVYKKFDEKPVVYDG 59 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE-HHHHHHCTCSS-SEEEEEECTTTSEEEESS
T ss_pred HHHHHHHHHHHhCcCCcEEEEEcHHHHHHHhCCCC-CcEEEeccCCCCceeccc
Confidence 35678999999997 79999988766667789888 99999999543 334444
No 177
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=83.95 E-value=3.3 Score=32.12 Aligned_cols=73 Identities=14% Similarity=0.098 Sum_probs=52.0
Q ss_pred eEEeChhhHHHHHHhcCCCceEEEEe-ccchHHHHHHHHHHHHh---CC-CcEEEEEeCCCC---CCCCCCCC--CcEEE
Q psy14385 131 VLEINGDTYVQEVNNAGEGIWVVLHF-IPLCSLINNHLSELAAK---FP-TTKFIKSISTTC---IPNYPDKN--LPTLF 200 (228)
Q Consensus 131 V~eIs~edf~~eV~~a~~~~~VVVhf-~~~C~~l~~~L~~LA~k---yp-~~KFvkI~ad~~---~~~y~v~~--LPTll 200 (228)
|++++.+.+..... .+ -...++.| -..-..+...+..+|++ |. .+.|+-+|++.. ...|++.. +|++.
T Consensus 1 ~~e~t~e~~~~~~~-~~-~~~~~l~f~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 1 VREITFENAEELTE-EG-LPFLILFHDKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIA 78 (111)
T ss_pred CcccccccHHHHhc-CC-CCeEEEEecchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEE
Confidence 56788888764443 32 12234444 44457799999999999 95 599999999873 46777765 99998
Q ss_pred EEECC
Q psy14385 201 IYFEG 205 (228)
Q Consensus 201 vYk~G 205 (228)
+....
T Consensus 79 i~~~~ 83 (111)
T cd03072 79 IDSFR 83 (111)
T ss_pred EEcch
Confidence 88764
No 178
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=82.81 E-value=3 Score=28.93 Aligned_cols=46 Identities=11% Similarity=0.180 Sum_probs=31.6
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCC-CCcEEEEEECCEEEe
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDK-NLPTLFIYFEGKMQS 209 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~-~LPTllvYk~G~~v~ 209 (228)
|+.|......|..+ ++.|..++.+.. ...++.. .+|++ |-+|+.++
T Consensus 10 Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~ig 63 (75)
T cd03418 10 CPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHIG 63 (75)
T ss_pred ChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEEe
Confidence 99999999999874 456655666542 1234555 89977 57887654
No 179
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=82.64 E-value=4.5 Score=28.15 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=32.8
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCC------CCCCCCCCcEEEEEECCEEEe
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTCI------PNYPDKNLPTLFIYFEGKMQS 209 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~------~~y~v~~LPTllvYk~G~~v~ 209 (228)
|+.|......|.+. ++.|..++.+... ...+...+|.+ |.+|+.++
T Consensus 11 Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~ig 62 (72)
T cd03029 11 CPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELIG 62 (72)
T ss_pred CHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEEe
Confidence 99999999999863 4566666665422 22477899997 67887653
No 180
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=82.54 E-value=5.3 Score=33.99 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=48.3
Q ss_pred ceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC------------------------------CCCCC
Q psy14385 150 IWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC------------------------------IPNYP 192 (228)
Q Consensus 150 ~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~------------------------------~~~y~ 192 (228)
.|||+.| |+.|..-.+.|.+++.+|. +++++-|..+.. ...|+
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 4666644 9999999999999999984 588887765530 12355
Q ss_pred CC----CCc----EEEEE-ECCEEEeEEeCccccC
Q psy14385 193 DK----NLP----TLFIY-FEGKMQSQMVGPDEFR 218 (228)
Q Consensus 193 v~----~LP----TllvY-k~G~~v~~lvG~~~~G 218 (228)
+. +.| +.+|+ .+|.+....+|....|
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~g 140 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTG 140 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCCC
Confidence 43 234 45555 6899999988876655
No 181
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=80.97 E-value=1.6 Score=26.41 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=17.0
Q ss_pred cChhcHHHHHHHHHHHHHHHHH
Q psy14385 100 EDEEDERVLQEYRRKRIAEMKA 121 (228)
Q Consensus 100 edeeDd~~Le~yR~kRl~ELk~ 121 (228)
+||++|+.-++.|++|+++...
T Consensus 5 ddEeed~ea~r~reeRla~y~a 26 (28)
T PF10587_consen 5 DDEEEDEEAERIREERLAAYAA 26 (28)
T ss_pred ccccccHHHHHHHHHHHHHHHc
Confidence 3445677889999999998653
No 182
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=80.84 E-value=5.5 Score=29.98 Aligned_cols=73 Identities=19% Similarity=0.097 Sum_probs=47.0
Q ss_pred eEEeC-hhhHHHHHHhcCCCceEEEEeccchHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCCCCCCCCcEEEEEECC
Q psy14385 131 VLEIN-GDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKF-PTTKFIKSISTTCIPNYPDKNLPTLFIYFEG 205 (228)
Q Consensus 131 V~eIs-~edf~~eV~~a~~~~~VVVhf~~~C~~l~~~L~~LA~ky-p~~KFvkI~ad~~~~~y~v~~LPTllvYk~G 205 (228)
+.+|+ .++...-+.... ...||-.|-..-......|..+|..+ .+..|.-.........+++ ..|++.+|++.
T Consensus 2 v~~i~~~~~~e~~~~~~~-~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~-~~~~i~l~~~~ 76 (102)
T cd03066 2 VEIINSERELQAFENIED-DIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDSKVAKKLGL-KMNEVDFYEPF 76 (102)
T ss_pred ceEcCCHHHHHHHhcccC-CeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcHHHHHHcCC-CCCcEEEeCCC
Confidence 46774 444544443032 35566666222225778899999999 8899976655555566665 47999999873
No 183
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=80.67 E-value=2.5 Score=29.89 Aligned_cols=46 Identities=13% Similarity=0.245 Sum_probs=31.0
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEEECCEEEe
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIYFEGKMQS 209 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvYk~G~~v~ 209 (228)
||.|......|.++. +.|-.++.+.. ....+...+|++ |-+|+.++
T Consensus 9 Cp~C~~a~~~L~~~~-----i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~ig 61 (79)
T TIGR02181 9 CPYCTRAKALLSSKG-----VTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHVG 61 (79)
T ss_pred ChhHHHHHHHHHHcC-----CCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence 999999999998653 44444454432 123467899997 56887553
No 184
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=79.11 E-value=4.3 Score=32.02 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=26.6
Q ss_pred eEEEEe----ccchHHHHHHHHHHHHhC---CCcEEEEEeC
Q psy14385 151 WVVLHF----IPLCSLINNHLSELAAKF---PTTKFIKSIS 184 (228)
Q Consensus 151 ~VVVhf----~~~C~~l~~~L~~LA~ky---p~~KFvkI~a 184 (228)
++|+-| ||.|+.+.+.+..+-++| ..++|+-.+.
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred eEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 444444 999999999999999998 4588876654
No 185
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=79.06 E-value=12 Score=29.43 Aligned_cols=66 Identities=9% Similarity=0.099 Sum_probs=42.0
Q ss_pred CceEEEEe--------ccchHHH--HHHHHHHHHhCCCcEEEEEeCCC-----CCCCCCCCCCcEEEEE---E-CCEEEe
Q psy14385 149 GIWVVLHF--------IPLCSLI--NNHLSELAAKFPTTKFIKSISTT-----CIPNYPDKNLPTLFIY---F-EGKMQS 209 (228)
Q Consensus 149 ~~~VVVhf--------~~~C~~l--~~~L~~LA~kyp~~KFvkI~ad~-----~~~~y~v~~LPTllvY---k-~G~~v~ 209 (228)
.++++|.| |..|+-+ ++-+.++-. .+.-+...|++. .+..+.+++.|++.++ . +++++.
T Consensus 17 ~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln--~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv~ 94 (116)
T cd02991 17 LRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN--TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIVG 94 (116)
T ss_pred CCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH--cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEEE
Confidence 36889988 2333321 222222222 245566778775 3578999999999999 2 356789
Q ss_pred EEeCccc
Q psy14385 210 QMVGPDE 216 (228)
Q Consensus 210 ~lvG~~~ 216 (228)
++.|...
T Consensus 95 ~i~G~~~ 101 (116)
T cd02991 95 RLEGLIQ 101 (116)
T ss_pred EEeCCCC
Confidence 9999754
No 186
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=79.05 E-value=4 Score=34.56 Aligned_cols=70 Identities=21% Similarity=0.309 Sum_probs=51.2
Q ss_pred CceEEEEe-----ccchHHHHHHHHHHHHhCC--CcEEEEEeCCCC-------------------------------CCC
Q psy14385 149 GIWVVLHF-----IPLCSLINNHLSELAAKFP--TTKFIKSISTTC-------------------------------IPN 190 (228)
Q Consensus 149 ~~~VVVhf-----~~~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~-------------------------------~~~ 190 (228)
+.||||+| |+.|..-...|..++.+|. +++++-|..+.. +..
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ 115 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS 115 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence 46888888 9999998889999999986 678887776631 022
Q ss_pred CCCC------CCcEEEEEE-CCEEEeEEeCccccC
Q psy14385 191 YPDK------NLPTLFIYF-EGKMQSQMVGPDEFR 218 (228)
Q Consensus 191 y~v~------~LPTllvYk-~G~~v~~lvG~~~~G 218 (228)
|++. ..|+.+|+. +|.++...++....|
T Consensus 116 ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~ 150 (199)
T PTZ00253 116 YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVG 150 (199)
T ss_pred cCCcccCCCceEEEEEEECCCCEEEEEEecCCCCC
Confidence 4442 247777776 788888888876665
No 187
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=78.10 E-value=2.7 Score=35.80 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=26.1
Q ss_pred EEEEe---ccchHHHHHHH---HHHHHhCC-CcEEEEEeC
Q psy14385 152 VVLHF---IPLCSLINNHL---SELAAKFP-TTKFIKSIS 184 (228)
Q Consensus 152 VVVhf---~~~C~~l~~~L---~~LA~kyp-~~KFvkI~a 184 (228)
||-+| ||.|..+.+.+ ..+.+.+| +++|++...
T Consensus 41 VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 41 VLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred EEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 44455 99999999977 88899997 688887654
No 188
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=77.71 E-value=11 Score=28.63 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=33.4
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCCCCCCCcEEEEEECCE
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGK 206 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~~~y~v~~LPTllvYk~G~ 206 (228)
.+.|.-+...|+++|.--+.+++...+.. . ..|++.+..+|+
T Consensus 30 ~~~~~e~~~ll~e~a~lSdkI~~~~~~~~-------~-~~P~~~i~~~~~ 71 (94)
T cd02974 30 SEKSAELLELLEEIASLSDKITLEEDNDD-------E-RKPSFSINRPGE 71 (94)
T ss_pred CcchHHHHHHHHHHHHhCCceEEEEecCC-------C-CCCEEEEecCCC
Confidence 68999999999999999998877543321 1 479999998883
No 189
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=76.62 E-value=7.2 Score=29.54 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=45.2
Q ss_pred eEEeC-hhhHHHHHHhcCCCceEEEEeccchHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCCCCCCCCcEEEEEE
Q psy14385 131 VLEIN-GDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKF-PTTKFIKSISTTCIPNYPDKNLPTLFIYF 203 (228)
Q Consensus 131 V~eIs-~edf~~eV~~a~~~~~VVVhf~~~C~~l~~~L~~LA~ky-p~~KFvkI~ad~~~~~y~v~~LPTllvYk 203 (228)
+.+|+ .++...-+. .. ...||-.|-..-..+...+..+|..+ .+..|.-.........|++ .|++++|+
T Consensus 2 ~~~i~s~~~l~~f~~-~~-~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~--~~~ivl~~ 72 (104)
T cd03069 2 SVELRTEAEFEKFLS-DD-DASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTSDKQLLEKYGY--GEGVVLFR 72 (104)
T ss_pred ccccCCHHHHHHHhc-cC-CcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEChHHHHHhcCC--CCceEEEe
Confidence 34663 344444343 32 34555566222335778888999999 6899977666666677877 78999994
No 190
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=76.57 E-value=6.3 Score=30.67 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=47.6
Q ss_pred EeChhhHHHHHHhcCCCceEEEEecc-------chHHHHHHHHHHHHhCC--CcEEEEEeCCCC---CCCCCCC--C--C
Q psy14385 133 EINGDTYVQEVNNAGEGIWVVLHFIP-------LCSLINNHLSELAAKFP--TTKFIKSISTTC---IPNYPDK--N--L 196 (228)
Q Consensus 133 eIs~edf~~eV~~a~~~~~VVVhf~~-------~C~~l~~~L~~LA~kyp--~~KFvkI~ad~~---~~~y~v~--~--L 196 (228)
+++.+++.... .. ..+++.+|. .-..+...+..+|++|. .+.|+-+|+++. .+.|++. . .
T Consensus 3 ~~~~en~~~~~-~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 3 HRTKDNRAQFT-KK---PLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred eeccchHHHhc-cC---CeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 45666666553 33 244554422 23568899999999997 699999999863 4667765 4 9
Q ss_pred cEEEEEECC
Q psy14385 197 PTLFIYFEG 205 (228)
Q Consensus 197 PTllvYk~G 205 (228)
|++.++...
T Consensus 79 P~~~i~~~~ 87 (111)
T cd03073 79 PVVAIRTAK 87 (111)
T ss_pred CEEEEEeCC
Confidence 999997753
No 191
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=75.93 E-value=5.2 Score=32.15 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=23.5
Q ss_pred eEEEEe---ccchHHHHHHHHHHHHhCC-CcEEE
Q psy14385 151 WVVLHF---IPLCSLINNHLSELAAKFP-TTKFI 180 (228)
Q Consensus 151 ~VVVhf---~~~C~~l~~~L~~LA~kyp-~~KFv 180 (228)
.|+.++ ||.|+.+.+.+..+..++| .+.|.
T Consensus 18 ~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 18 EVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred EEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 344444 9999999999999999987 35554
No 192
>PRK10638 glutaredoxin 3; Provisional
Probab=74.80 E-value=7.7 Score=27.93 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=32.9
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEEEECCEEEeEE
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFIYFEGKMQSQM 211 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllvYk~G~~v~~l 211 (228)
|+.|+.+...|+.. ++.|..++.+.- ....+...+|++ |.+|+.++.+
T Consensus 12 Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~igG~ 66 (83)
T PRK10638 12 CPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHIGGC 66 (83)
T ss_pred ChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEeCH
Confidence 99999999999864 355555666542 233466789987 4588766543
No 193
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=74.75 E-value=12 Score=28.67 Aligned_cols=73 Identities=7% Similarity=0.074 Sum_probs=45.3
Q ss_pred eEEeCh-hhHHHHHHhcCCCceEEEEeccchHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCCCCCCCCcEEEEEECC
Q psy14385 131 VLEING-DTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKF-PTTKFIKSISTTCIPNYPDKNLPTLFIYFEG 205 (228)
Q Consensus 131 V~eIs~-edf~~eV~~a~~~~~VVVhf~~~C~~l~~~L~~LA~ky-p~~KFvkI~ad~~~~~y~v~~LPTllvYk~G 205 (228)
+.+|+. ++....+... ....||-.|...-......+..+|..+ .+..|.-........++.+. .|.+++|+--
T Consensus 2 v~~i~s~~ele~f~~~~-~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~~~~~~~~~~~~-~~~vvl~rp~ 76 (107)
T cd03068 2 SKQLQTLKQVQEFLRDG-DDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTFDSEIFKSLKVS-PGQLVVFQPE 76 (107)
T ss_pred ceEcCCHHHHHHHHhcC-CCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEChHHHHHhcCCC-CCceEEECcH
Confidence 456743 4454444332 135566666222225778888999998 78999766666555677654 6788888543
No 194
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=73.70 E-value=6 Score=30.78 Aligned_cols=60 Identities=20% Similarity=0.417 Sum_probs=33.5
Q ss_pred CCCCccchHHHHHcCC-CCCCCCCCChhHHHHHHHHHHHHhhhhchhhccCCChhHHhhccChhcHHHHH-HHHH
Q psy14385 41 YEEDTQWNDILRAKGI-IPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELEDEEDERVLQ-EYRR 113 (228)
Q Consensus 41 ~~edTewnDilrk~Gi-~p~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ldeL~eledeeDd~~Le-~yR~ 113 (228)
-||-|.-=-=|-++|- -|++++..++++-.+|....-+++ +||-.|+.++||+.+. +|+-
T Consensus 23 kNEKtKiivKl~~~g~g~P~REp~isee~qk~mm~~~~rrq-------------EElKkLee~ddd~ylns~Wad 84 (98)
T PF11069_consen 23 KNEKTKIIVKLQKRGQGPPPREPVISEEEQKAMMAYYYRRQ-------------EELKKLEEDDDDSYLNSQWAD 84 (98)
T ss_pred CCcceeEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------------HHHHHHHhhhHHHHHHHhccC
Confidence 3444443322334443 466778888887777776655432 4566666555666553 4443
No 195
>KOG1752|consensus
Probab=73.57 E-value=14 Score=28.87 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=37.0
Q ss_pred eEEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCC--------CCCCCCCCcEEEEEECCEEEeE
Q psy14385 151 WVVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTCI--------PNYPDKNLPTLFIYFEGKMQSQ 210 (228)
Q Consensus 151 ~VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~--------~~y~v~~LPTllvYk~G~~v~~ 210 (228)
+|||+= |+.|..+...|.. .-+.-+++.+|-..-. +--.-+.+|.++ -+|+.++.
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~---~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vF--I~Gk~iGG 80 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSD---LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVF--IGGKFIGG 80 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHh---CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEE--ECCEEEcC
Confidence 577766 9999999998888 2245677777766421 112346889865 57877643
No 196
>COG2118 DNA-binding protein [General function prediction only]
Probab=73.35 E-value=3.7 Score=32.84 Aligned_cols=20 Identities=40% Similarity=0.720 Sum_probs=16.6
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q psy14385 104 DERVLQEYRRKRIAEMKAMA 123 (228)
Q Consensus 104 Dd~~Le~yR~kRl~ELk~~~ 123 (228)
||+.|+++|++||.||++.+
T Consensus 2 dd~eLEeIRrrkl~eLQrq~ 21 (116)
T COG2118 2 DDEELEEIRRRKLAELQRQA 21 (116)
T ss_pred ChHHHHHHHHHHHHHHHHhh
Confidence 44579999999999999843
No 197
>PRK13191 putative peroxiredoxin; Provisional
Probab=72.97 E-value=7.6 Score=33.64 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=51.5
Q ss_pred CceEEEEe-----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCCC------------------------------CCCC
Q psy14385 149 GIWVVLHF-----IPLCSLINNHLSELAAKF--PTTKFIKSISTTC------------------------------IPNY 191 (228)
Q Consensus 149 ~~~VVVhf-----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~~------------------------------~~~y 191 (228)
++|||++| |+.|..-.+.|.+++.+| .+++++-|..+.. +..|
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~y 112 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRL 112 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHc
Confidence 45777744 999999999999999998 4678877766631 0123
Q ss_pred CC-------CCCcEEEEEE-CCEEEeEEeCccccCC
Q psy14385 192 PD-------KNLPTLFIYF-EGKMQSQMVGPDEFRT 219 (228)
Q Consensus 192 ~v-------~~LPTllvYk-~G~~v~~lvG~~~~G~ 219 (228)
++ ..+|+.+|.- +|.+....++....|.
T Consensus 113 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr 148 (215)
T PRK13191 113 GMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGR 148 (215)
T ss_pred CCcccccCCceeEEEEEECCCCEEEEEEecCCCCCC
Confidence 43 2468887775 8999888888776663
No 198
>PRK13599 putative peroxiredoxin; Provisional
Probab=72.59 E-value=8.2 Score=33.49 Aligned_cols=70 Identities=23% Similarity=0.351 Sum_probs=49.4
Q ss_pred CceEEE-Ee----ccchHHHHHHHHHHHHhC--CCcEEEEEeCCCC------------------------------CCCC
Q psy14385 149 GIWVVL-HF----IPLCSLINNHLSELAAKF--PTTKFIKSISTTC------------------------------IPNY 191 (228)
Q Consensus 149 ~~~VVV-hf----~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~~------------------------------~~~y 191 (228)
+.|||+ +| |+.|..-.+.|.+++.+| .+++++-|.++.. +..|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y 107 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL 107 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence 357654 44 999999999999999998 4688877766631 1234
Q ss_pred CC-------CCCcEEEEEE-CCEEEeEEeCccccC
Q psy14385 192 PD-------KNLPTLFIYF-EGKMQSQMVGPDEFR 218 (228)
Q Consensus 192 ~v-------~~LPTllvYk-~G~~v~~lvG~~~~G 218 (228)
++ ..+|+++|+- +|+++..++.....|
T Consensus 108 g~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~g 142 (215)
T PRK13599 108 GMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVG 142 (215)
T ss_pred CCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCC
Confidence 44 2578888886 788888876555444
No 199
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=71.61 E-value=6.3 Score=37.52 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=36.5
Q ss_pred EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCC---C------------CCCCCCCcEEEEEECCEEEe
Q psy14385 152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSISTTCI---P------------NYPDKNLPTLFIYFEGKMQS 209 (228)
Q Consensus 152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~---~------------~y~v~~LPTllvYk~G~~v~ 209 (228)
|+|.- ||.|......|... ++.|..++.++-. + ..+.+.+|++++ +|+.++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~ig 72 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIG 72 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEEe
Confidence 44444 99999999999874 5788778877532 1 136789999966 786553
No 200
>KOG0913|consensus
Probab=70.70 E-value=1.9 Score=38.60 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=64.9
Q ss_pred ceEEeChhhHHHHHHhcCCCceEEEEe---ccchHHHHHHHHHHHHhC--CCcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385 130 RVLEINGDTYVQEVNNAGEGIWVVLHF---IPLCSLINNHLSELAAKF--PTTKFIKSISTTC---IPNYPDKNLPTLFI 201 (228)
Q Consensus 130 ~V~eIs~edf~~eV~~a~~~~~VVVhf---~~~C~~l~~~L~~LA~ky--p~~KFvkI~ad~~---~~~y~v~~LPTllv 201 (228)
.++.|+.+++..-++. -|.+.++ ||.|+-+.++|..+|.-- -.++..+|+.+.. .-+|-+..+|||-=
T Consensus 25 ~~~~~~eenw~~~l~g----ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYH 100 (248)
T KOG0913|consen 25 KLTRIDEENWKELLTG----EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYH 100 (248)
T ss_pred eeEEecccchhhhhch----HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEE
Confidence 6888999999877753 3777666 999999999999999754 3588899998874 47889999999999
Q ss_pred EECCEEEeEEeCcc
Q psy14385 202 YFEGKMQSQMVGPD 215 (228)
Q Consensus 202 Yk~G~~v~~lvG~~ 215 (228)
.++|.. .|+.|..
T Consensus 101 vkDGeF-rrysgaR 113 (248)
T KOG0913|consen 101 VKDGEF-RRYSGAR 113 (248)
T ss_pred eecccc-ccccCcc
Confidence 999964 3555554
No 201
>PTZ00062 glutaredoxin; Provisional
Probab=67.86 E-value=15 Score=31.84 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=39.4
Q ss_pred hhHHHHHHhcCCCceEEEEe--------ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-------CCCCCCCCCcEEEE
Q psy14385 137 DTYVQEVNNAGEGIWVVLHF--------IPLCSLINNHLSELAAKFPTTKFIKSISTTC-------IPNYPDKNLPTLFI 201 (228)
Q Consensus 137 edf~~eV~~a~~~~~VVVhf--------~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-------~~~y~v~~LPTllv 201 (228)
.++++.+.++. +|||+. |+.|+.+...|+.+ ++.|..+|..+- ....+-..+|.+
T Consensus 103 ~~~v~~li~~~---~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqV-- 172 (204)
T PTZ00062 103 VEKIERLIRNH---KILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQL-- 172 (204)
T ss_pred HHHHHHHHhcC---CEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeE--
Confidence 45566665553 577776 77788888888754 456666666542 122344567765
Q ss_pred EECCEEEeE
Q psy14385 202 YFEGKMQSQ 210 (228)
Q Consensus 202 Yk~G~~v~~ 210 (228)
|-||+.++.
T Consensus 173 fI~G~~IGG 181 (204)
T PTZ00062 173 YVNGELIGG 181 (204)
T ss_pred EECCEEEcC
Confidence 568877654
No 202
>PRK10824 glutaredoxin-4; Provisional
Probab=66.88 E-value=13 Score=29.48 Aligned_cols=67 Identities=10% Similarity=0.159 Sum_probs=39.7
Q ss_pred hhHHHHHHhcCCCceEEEEe--------ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC-----CCCCCCCCCcEEEEEE
Q psy14385 137 DTYVQEVNNAGEGIWVVLHF--------IPLCSLINNHLSELAAKFPTTKFIKSISTTC-----IPNYPDKNLPTLFIYF 203 (228)
Q Consensus 137 edf~~eV~~a~~~~~VVVhf--------~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~-----~~~y~v~~LPTllvYk 203 (228)
.++++...+.. .|||+. ||.|+.....|..+...|. .+.++.+.- ...-+-+.+|- ||-
T Consensus 5 ~~~v~~~I~~~---~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~---~idi~~d~~~~~~l~~~sg~~TVPQ--IFI 76 (115)
T PRK10824 5 IEKIQRQIAEN---PILLYMKGSPKLPSCGFSAQAVQALSACGERFA---YVDILQNPDIRAELPKYANWPTFPQ--LWV 76 (115)
T ss_pred HHHHHHHHhcC---CEEEEECCCCCCCCCchHHHHHHHHHHcCCCce---EEEecCCHHHHHHHHHHhCCCCCCe--EEE
Confidence 45566555443 577765 9999999999988753332 233333321 12224457776 466
Q ss_pred CCEEEeEE
Q psy14385 204 EGKMQSQM 211 (228)
Q Consensus 204 ~G~~v~~l 211 (228)
||+.++..
T Consensus 77 ~G~~IGG~ 84 (115)
T PRK10824 77 DGELVGGC 84 (115)
T ss_pred CCEEEcCh
Confidence 88877643
No 203
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=65.70 E-value=87 Score=26.90 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=37.4
Q ss_pred cCCCceEEeChhhHHHHHHhcCCCceEEEEe--c--cchHHHHHHHHHHHHhCCCcEEEEE
Q psy14385 126 SRFGRVLEINGDTYVQEVNNAGEGIWVVLHF--I--PLCSLINNHLSELAAKFPTTKFIKS 182 (228)
Q Consensus 126 ~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf--~--~~C~~l~~~L~~LA~kyp~~KFvkI 182 (228)
...|....+|.++.++.|.++.. -+|+|.| | ..=-.=...|..+| .||++..+-+
T Consensus 30 ~S~GNPT~lsG~elV~lIk~a~~-DPV~VMfDD~G~~g~G~GE~Al~~v~-~h~~IeVLG~ 88 (180)
T PF14097_consen 30 QSAGNPTPLSGEELVELIKQAPH-DPVLVMFDDKGFIGEGPGEQALEYVA-NHPDIEVLGA 88 (180)
T ss_pred ccCCCCCcCCHHHHHHHHHhCCC-CCEEEEEeCCCCCCCCccHHHHHHHH-cCCCceEEEE
Confidence 45789999999999999998864 5899999 1 11112234444444 4787776544
No 204
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=60.26 E-value=10 Score=30.80 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=26.5
Q ss_pred EEEEe---ccchHHHHHHHHHHHHhCCCcEEEEEeC
Q psy14385 152 VVLHF---IPLCSLINNHLSELAAKFPTTKFIKSIS 184 (228)
Q Consensus 152 VVVhf---~~~C~~l~~~L~~LA~kyp~~KFvkI~a 184 (228)
|.++| ||-|-...+.|.++++.|+++++.-...
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 45555 9999999999999999998777765443
No 205
>KOG4277|consensus
Probab=60.26 E-value=25 Score=33.07 Aligned_cols=95 Identities=14% Similarity=0.229 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhccCCCceEE-eCh-hhHHHHHHhcCCCceEEEEe-ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC
Q psy14385 111 YRRKRIAEMKAMAEKSRFGRVLE-ING-DTYVQEVNNAGEGIWVVLHF-IPLCSLINNHLSELAAKFPTTKFIKSISTTC 187 (228)
Q Consensus 111 yR~kRl~ELk~~~~~~~fG~V~e-Is~-edf~~eV~~a~~~~~VVVhf-~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~ 187 (228)
||--|-++---..+.+-.|.+++ |+. +.....+...+ .+-.|+| .+...+........+.++.-+.|....-+-+
T Consensus 115 YRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rh--q~ffVf~Gtge~PL~d~fidAASe~~~~a~FfSaseeVa 192 (468)
T KOG4277|consen 115 YRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARH--QPFFVFFGTGEGPLFDAFIDAASEKFSVARFFSASEEVA 192 (468)
T ss_pred cCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhcc--CceEEEEeCCCCcHHHHHHHHhhhheeeeeeeccccccC
Confidence 55445444333333444566555 555 33344454443 5778888 6778888888888888999899997555555
Q ss_pred CCCCCCCCCcEEEEEECCEE
Q psy14385 188 IPNYPDKNLPTLFIYFEGKM 207 (228)
Q Consensus 188 ~~~y~v~~LPTllvYk~G~~ 207 (228)
++.-..+-.|.+++||+..-
T Consensus 193 Pe~~~~kempaV~VFKDetf 212 (468)
T KOG4277|consen 193 PEENDAKEMPAVAVFKDETF 212 (468)
T ss_pred CcccchhhccceEEEcccee
Confidence 55556678899999998743
No 206
>PF13362 Toprim_3: Toprim domain
Probab=59.52 E-value=6.8 Score=29.03 Aligned_cols=17 Identities=41% Similarity=0.782 Sum_probs=14.1
Q ss_pred CCCCCccchHHHHHcCC
Q psy14385 40 NYEEDTQWNDILRAKGI 56 (228)
Q Consensus 40 ~~~edTewnDilrk~Gi 56 (228)
.+.+.+-|||+|+++|-
T Consensus 79 p~~~g~D~ND~l~~~G~ 95 (96)
T PF13362_consen 79 PGPEGKDWNDLLQARGK 95 (96)
T ss_pred CCCCCchHHHHHHhhCC
Confidence 35777899999999983
No 207
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=58.62 E-value=15 Score=26.57 Aligned_cols=43 Identities=28% Similarity=0.410 Sum_probs=33.4
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEE
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFI 201 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllv 201 (228)
|+-|..+...|..++..++ +.+-.||.+.- ..+|+. .+|.+.+
T Consensus 10 C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~-~IPVl~~ 55 (81)
T PF05768_consen 10 CHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY-RIPVLHI 55 (81)
T ss_dssp SHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT-STSEEEE
T ss_pred CChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC-CCCEEEE
Confidence 9999999999999888777 66666776653 377886 7998654
No 208
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=57.39 E-value=21 Score=30.27 Aligned_cols=35 Identities=9% Similarity=0.051 Sum_probs=26.3
Q ss_pred CceEEEEe----ccchHHHHHHHHHHHHhCC--CcEEEEEeC
Q psy14385 149 GIWVVLHF----IPLCSLINNHLSELAAKFP--TTKFIKSIS 184 (228)
Q Consensus 149 ~~~VVVhf----~~~C~~l~~~L~~LA~kyp--~~KFvkI~a 184 (228)
|++|||.| |+.|+. -+.|++|.++|. ++.++-+..
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~ 65 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPC 65 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeec
Confidence 35666666 999976 558999999995 577777765
No 209
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=57.05 E-value=54 Score=26.67 Aligned_cols=72 Identities=10% Similarity=0.184 Sum_probs=50.6
Q ss_pred eEEeChhhHHHHHHhcCCCceEEEEe--ccchHHHHHHHHHHH-HhC---CCcEEEEEeCCC--------CCCCCCC--C
Q psy14385 131 VLEINGDTYVQEVNNAGEGIWVVLHF--IPLCSLINNHLSELA-AKF---PTTKFIKSISTT--------CIPNYPD--K 194 (228)
Q Consensus 131 V~eIs~edf~~eV~~a~~~~~VVVhf--~~~C~~l~~~L~~LA-~ky---p~~KFvkI~ad~--------~~~~y~v--~ 194 (228)
.++++.-.|.+.|.+. ..|+|.| .-|-.--...+..|| +.+ +++-+..+-..+ ..++|++ .
T Consensus 6 ~v~LD~~tFdKvi~kf---~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke 82 (126)
T PF07912_consen 6 CVPLDELTFDKVIPKF---KYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKE 82 (126)
T ss_dssp SEEESTTHHHHHGGGS---SEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCC
T ss_pred eeeccceehhheeccC---ceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcc
Confidence 4577788888888755 5899999 556666778888888 433 567888876664 2467777 7
Q ss_pred CCcEEEEEECC
Q psy14385 195 NLPTLFIYFEG 205 (228)
Q Consensus 195 ~LPTllvYk~G 205 (228)
+.|.+.+|+.|
T Consensus 83 ~fPv~~LF~~~ 93 (126)
T PF07912_consen 83 DFPVIYLFVGD 93 (126)
T ss_dssp C-SEEEEEESS
T ss_pred cCCEEEEecCC
Confidence 89999999943
No 210
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=56.88 E-value=18 Score=25.19 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=20.9
Q ss_pred ccchHHHHHHHHHHHHhCC-CcEEEEEe
Q psy14385 157 IPLCSLINNHLSELAAKFP-TTKFIKSI 183 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp-~~KFvkI~ 183 (228)
||.|..+.+.+.++...++ +++|....
T Consensus 9 Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 36 (98)
T cd02972 9 CPYCYLFEPELEKLLYADDGGVRVVYRP 36 (98)
T ss_pred CHhHHhhhHHHHHHHhhcCCcEEEEEec
Confidence 9999999999999986554 46665443
No 211
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.92 E-value=16 Score=35.26 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=42.8
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC---CCCCCCCCCcEEEEEECCEEEe
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC---IPNYPDKNLPTLFIYFEGKMQS 209 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~---~~~y~v~~LPTllvYk~G~~v~ 209 (228)
|..|.-+-+.|+-++--.|.++-+.|+.--. ++.-++.++||+ |.||+..+
T Consensus 128 C~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtv--flnGe~fg 181 (520)
T COG3634 128 CHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTV--FLNGEEFG 181 (520)
T ss_pred ccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceE--EEcchhhc
Confidence 9999999999999999999999999987653 566689999996 56775443
No 212
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=53.04 E-value=46 Score=32.25 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=34.9
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCCCCCCCcEEEEEECCEE
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKM 207 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~~~y~v~~LPTllvYk~G~~ 207 (228)
|+.|..+...|++||+--+.+++..-+. .....|++.++++|+-
T Consensus 30 ~~~~~~~~~~~~~~~~~s~ki~~~~~~~-------~~~~~p~~~~~~~~~~ 73 (515)
T TIGR03140 30 HEKSKELLELLDEIASLSDKISLTQNTA-------DTLRKPSFTILRDGAD 73 (515)
T ss_pred CchhHHHHHHHHHHHHhCCCeEEEEecC-------CcCCCCeEEEecCCcc
Confidence 8999999999999999999888754332 2245699999988863
No 213
>KOG4752|consensus
Probab=52.05 E-value=18 Score=21.08 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHh
Q psy14385 109 QEYRRKRIAEMKAMAE 124 (228)
Q Consensus 109 e~yR~kRl~ELk~~~~ 124 (228)
++||++||.-|+....
T Consensus 3 ~kwrkkrmrrlkrkrr 18 (26)
T KOG4752|consen 3 AKWRKKRMRRLKRKRR 18 (26)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6899999999987543
No 214
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=51.74 E-value=23 Score=31.72 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=41.4
Q ss_pred ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCC-cEEEEEeCCCC
Q psy14385 130 RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT-TKFIKSISTTC 187 (228)
Q Consensus 130 ~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~-~KFvkI~ad~~ 187 (228)
.|+.++++.......=+..++++|+.| ||+-..=-..+.+|+++|.+ +.|+-|=..++
T Consensus 83 ~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EA 145 (237)
T PF00837_consen 83 PVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEA 145 (237)
T ss_pred ceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhh
Confidence 477777665433333223357999999 77777777888999999997 57988876664
No 215
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=51.57 E-value=72 Score=30.90 Aligned_cols=43 Identities=14% Similarity=0.058 Sum_probs=34.3
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCCCCCCCcEEEEEECCEE
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKM 207 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~~~y~v~~LPTllvYk~G~~ 207 (228)
|+.|..+...|++||.--+.+++..-+. . ...|++.++++|+-
T Consensus 30 ~~~~~~~~~~~~~~~~~s~~i~~~~~~~-------~-~~~p~~~~~~~~~~ 72 (517)
T PRK15317 30 SEKSAELKELLEEIASLSDKITVEEDSL-------D-VRKPSFSITRPGED 72 (517)
T ss_pred CchHHHHHHHHHHHHHhCCceEEEEccC-------C-CCCCEEEEEcCCcc
Confidence 9999999999999999999888744221 1 24899999988754
No 216
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.88 E-value=60 Score=25.59 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=35.8
Q ss_pred ceEEEEe-----ccchHHHHHHHHHHHHhCCCcEEEEEeCCC------CCCCCCCCCCcEE-EEEECCEEEeE
Q psy14385 150 IWVVLHF-----IPLCSLINNHLSELAAKFPTTKFIKSISTT------CIPNYPDKNLPTL-FIYFEGKMQSQ 210 (228)
Q Consensus 150 ~~VVVhf-----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~------~~~~y~v~~LPTl-lvYk~G~~v~~ 210 (228)
.+||+++ .|.|.--..+...|...-. +.|.-+|+=. -++.|. +-||+ -+|-||+.++.
T Consensus 15 n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~-v~~~~vnVL~d~eiR~~lk~~s--~WPT~PQLyi~GEfvGG 84 (105)
T COG0278 15 NPVVLFMKGTPEFPQCGFSAQAVQILSACGV-VDFAYVDVLQDPEIRQGLKEYS--NWPTFPQLYVNGEFVGG 84 (105)
T ss_pred CceEEEecCCCCCCCCCccHHHHHHHHHcCC-cceeEEeeccCHHHHhccHhhc--CCCCCceeeECCEEecc
Confidence 3688888 6777666666666665544 6666565432 134443 34555 57999987754
No 217
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=48.06 E-value=8 Score=28.23 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=29.8
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCC--------CC-CCCCCCCcEEEEEECCEEE
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTC--------IP-NYPDKNLPTLFIYFEGKMQ 208 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~--------~~-~y~v~~LPTllvYk~G~~v 208 (228)
||.|......|.+. ++.|..++.+.- +. ..+.+.+|.|++ +|+.+
T Consensus 11 CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~i 64 (80)
T COG0695 11 CPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHV 64 (80)
T ss_pred CchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEE
Confidence 99999999999843 345555554432 22 237899998764 66544
No 218
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=47.87 E-value=24 Score=30.92 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=16.1
Q ss_pred CCCCCCCCcEEEEEECCEEE
Q psy14385 189 PNYPDKNLPTLFIYFEGKMQ 208 (228)
Q Consensus 189 ~~y~v~~LPTllvYk~G~~v 208 (228)
.++++++.||++ |.||..+
T Consensus 196 ~~lgi~gTPtiv-~~~G~~~ 214 (232)
T PRK10877 196 VQFGVQGTPAIV-LSNGTLV 214 (232)
T ss_pred HHcCCccccEEE-EcCCeEe
Confidence 457899999999 8899876
No 219
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=46.04 E-value=36 Score=30.44 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=39.7
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCCCCCCCcEEEEEECCEEEeE
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQ 210 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~~~y~v~~LPTllvYk~G~~v~~ 210 (228)
..+|..|-++|+.||.++..+-.+-+.-=..+.-|.+ .++.+|||+++.+
T Consensus 168 mkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD----~IVAlK~G~vv~~ 217 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSD----HIVALKNGKVVKQ 217 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhh----heeeecCCEEEec
Confidence 7899999999999999998876665543334455665 6899999999876
No 220
>KOG3431|consensus
Probab=45.95 E-value=16 Score=29.62 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14385 105 ERVLQEYRRKRIAEMKAMA 123 (228)
Q Consensus 105 d~~Le~yR~kRl~ELk~~~ 123 (228)
|.+|+.+|++||++|+...
T Consensus 2 D~eL~AiR~qRlaqlqa~~ 20 (129)
T KOG3431|consen 2 DPELQAIRAQRLAQLQANS 20 (129)
T ss_pred chHHHHHHHHHHHHhhhhc
Confidence 4679999999999998764
No 221
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=43.34 E-value=38 Score=27.86 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=31.7
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCC-------CCCC----CCCCcEEEEEECCEEEe
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSISTTCI-------PNYP----DKNLPTLFIYFEGKMQS 209 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~-------~~y~----v~~LPTllvYk~G~~v~ 209 (228)
|+.|..+..+|+.+ .+.|-.+|.+.-. ..++ -..+|.++ -+|+.++
T Consensus 16 ~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF--I~G~~IG 72 (147)
T cd03031 16 FEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF--VDGRYLG 72 (147)
T ss_pred ChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE--ECCEEEe
Confidence 89999999999875 4778888886521 1223 26788765 5676554
No 222
>PRK04239 hypothetical protein; Provisional
Probab=43.22 E-value=19 Score=28.55 Aligned_cols=17 Identities=35% Similarity=0.722 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy14385 108 LQEYRRKRIAEMKAMAE 124 (228)
Q Consensus 108 Le~yR~kRl~ELk~~~~ 124 (228)
|+++|++||+||+....
T Consensus 3 Le~IR~~rl~eLq~q~~ 19 (110)
T PRK04239 3 LEEIRRRKLEELQKQAQ 19 (110)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88999999999987543
No 223
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=42.53 E-value=35 Score=28.83 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=30.9
Q ss_pred hHHHHHHhcCCCceEEEEe-------ccchHHHHHHHHHHHHhCCCcEEEEEeC
Q psy14385 138 TYVQEVNNAGEGIWVVLHF-------IPLCSLINNHLSELAAKFPTTKFIKSIS 184 (228)
Q Consensus 138 df~~eV~~a~~~~~VVVhf-------~~~C~~l~~~L~~LA~kyp~~KFvkI~a 184 (228)
.+.+...+.+ .+|.+|. ..........+..++.+||+++|+-...
T Consensus 121 ~~~~~~~~~~--~pv~~H~g~~~~~~~~~~~~~~~~~~~~~~~~P~l~ii~~H~ 172 (273)
T PF04909_consen 121 PIFEAAEELG--LPVLIHTGMTGFPDAPSDPADPEELEELLERFPDLRIILAHL 172 (273)
T ss_dssp HHHHHHHHHT---EEEEEESHTHHHHHHHHHHHHHHHTTHHHHSTTSEEEESGG
T ss_pred HHHHHHHhhc--cceeeeccccchhhhhHHHHHHHHHHHHHHHhcCCeEEEecC
Confidence 4566666654 7888883 2344456677889999999999986543
No 224
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=40.47 E-value=69 Score=22.92 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=30.0
Q ss_pred EEEEeccchHHHH---HHHHHHHHhCCC--cEEEEEeCCCCCCCCCCCCCcEEEEEECCEEEeE
Q psy14385 152 VVLHFIPLCSLIN---NHLSELAAKFPT--TKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQ 210 (228)
Q Consensus 152 VVVhf~~~C~~l~---~~L~~LA~kyp~--~KFvkI~ad~~~~~y~v~~LPTllvYk~G~~v~~ 210 (228)
|.|.||..|.... ..-..|-..||+ ..+- +.. ..--+|-|+.||+++..
T Consensus 3 V~IeYC~~C~~~~~a~~l~~~l~~~fp~~~~~v~-~~~---------~~~G~FEV~v~g~lI~S 56 (76)
T PF10262_consen 3 VTIEYCTSCGYRPRALELAQELLQTFPDRIAEVE-LSP---------GSTGAFEVTVNGELIFS 56 (76)
T ss_dssp EEEEEETTTTCHHHHHHHHHHHHHHSTTTCSEEE-EEE---------ESTT-EEEEETTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcceEEE-EEe---------ccCCEEEEEEccEEEEE
Confidence 5566688897444 444567788998 3322 211 12337889999998875
No 225
>PHA03075 glutaredoxin-like protein; Provisional
Probab=40.34 E-value=27 Score=28.22 Aligned_cols=25 Identities=24% Similarity=0.520 Sum_probs=22.8
Q ss_pred eEEEEe----ccchHHHHHHHHHHHHhCC
Q psy14385 151 WVVLHF----IPLCSLINNHLSELAAKFP 175 (228)
Q Consensus 151 ~VVVhf----~~~C~~l~~~L~~LA~kyp 175 (228)
.+++.| |+-|...+.+|..|..+|.
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 467888 9999999999999999997
No 226
>KOG2792|consensus
Probab=37.06 E-value=64 Score=29.54 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=37.8
Q ss_pred ccCCCceEEeChhhHHHHHHhcCCCceEEEEe-ccch--------HHHHHHHHHHHHhCCCc---EEEEEeCCC
Q psy14385 125 KSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF-IPLC--------SLINNHLSELAAKFPTT---KFIKSISTT 186 (228)
Q Consensus 125 ~~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf-~~~C--------~~l~~~L~~LA~kyp~~---KFvkI~ad~ 186 (228)
++.-|...++...+=...-.+.=.|+|+++.| +..| ..|...+.+|.++..-. -|+.+|.+.
T Consensus 115 k~~iGGpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeR 188 (280)
T KOG2792|consen 115 KPAIGGPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPER 188 (280)
T ss_pred CCccCCceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCccc
Confidence 45566666653221111111222468999999 4444 35888888888887544 799999864
No 227
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=36.72 E-value=32 Score=27.83 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=20.0
Q ss_pred CCCCCCCCCcEEEEEECCEEEeEEeCcccc
Q psy14385 188 IPNYPDKNLPTLFIYFEGKMQSQMVGPDEF 217 (228)
Q Consensus 188 ~~~y~v~~LPTllvYk~G~~v~~lvG~~~~ 217 (228)
...+++.++||++| ||+ ..+.|...+
T Consensus 160 a~~~gv~GvP~~vv--~g~--~~~~G~~~~ 185 (193)
T PF01323_consen 160 ARQLGVFGVPTFVV--NGK--YRFFGADRL 185 (193)
T ss_dssp HHHTTCSSSSEEEE--TTT--EEEESCSSH
T ss_pred HHHcCCcccCEEEE--CCE--EEEECCCCH
Confidence 35678999999999 887 556776654
No 228
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=35.42 E-value=86 Score=26.79 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=21.1
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEEe
Q psy14385 157 IPLCSLINNHLSELAAKFPTTKFIKSI 183 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~kyp~~KFvkI~ 183 (228)
||.|+.+.+.+......++.++|+..+
T Consensus 96 Cp~C~~~~~~l~~~~i~~~~~~~~~~~ 122 (244)
T COG1651 96 CPYCKEAFPELKKKYIDDGKVRLVLRE 122 (244)
T ss_pred CccHHHHHHHHHHHhhhcCCCceEEEE
Confidence 999988888888877777777665443
No 229
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=34.57 E-value=50 Score=27.18 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=23.6
Q ss_pred ceeccCCCCCCCccc-----hHHHHHcCCCCCCCC
Q psy14385 33 AVVNLKPNYEEDTQW-----NDILRAKGIIPQKEK 62 (228)
Q Consensus 33 ~~~~~~~~~~edTew-----nDilrk~Gi~p~k~~ 62 (228)
+.+++.-+|-=+|.| -.-||.+||-||...
T Consensus 60 V~V~i~~~p~Wt~d~it~~gr~~l~~~giapp~~~ 94 (146)
T TIGR02159 60 VEVSTSLDPPWTTDWITEDAREKLREYGIAPPAGH 94 (146)
T ss_pred EEEeEeeCCCCChHHCCHHHHHHHHhcCccCCCcc
Confidence 556666699999999 456888999999764
No 230
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=33.65 E-value=96 Score=25.63 Aligned_cols=37 Identities=24% Similarity=0.462 Sum_probs=23.4
Q ss_pred CceEEEEe----c-cchHHHHHHHHHHHHh----CCCcEEEEEeCC
Q psy14385 149 GIWVVLHF----I-PLCSLINNHLSELAAK----FPTTKFIKSIST 185 (228)
Q Consensus 149 ~~~VVVhf----~-~~C~~l~~~L~~LA~k----yp~~KFvkI~ad 185 (228)
|+|+||.| | .-|..+...|.++.++ ...+.|+-|..+
T Consensus 52 Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 52 GKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 57999999 6 4577766666555554 335666655544
No 231
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=33.02 E-value=21 Score=29.79 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=16.0
Q ss_pred CCCCCCCCcEEEEEECCEEE
Q psy14385 189 PNYPDKNLPTLFIYFEGKMQ 208 (228)
Q Consensus 189 ~~y~v~~LPTllvYk~G~~v 208 (228)
..++++++|||+ |.||..+
T Consensus 166 ~~~gi~gtPtii-~~~G~~~ 184 (197)
T cd03020 166 RQLGVNGTPTIV-LADGRVV 184 (197)
T ss_pred HHcCCCcccEEE-ECCCeEe
Confidence 457899999997 9999874
No 232
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=32.97 E-value=1.9e+02 Score=23.20 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=39.5
Q ss_pred eChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhC---CCcEEEEEeCCCCC
Q psy14385 134 INGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKF---PTTKFIKSISTTCI 188 (228)
Q Consensus 134 Is~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~ky---p~~KFvkI~ad~~~ 188 (228)
++.+++.+.-...- +...||-| .+.-..+-++|.++|+.| |++-|+-|+.+..+
T Consensus 6 l~~~~m~e~wedd~-~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FP 66 (120)
T cd03074 6 LKPENMFETWEDDL-DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFP 66 (120)
T ss_pred ccHHHHHHhhhccc-CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCc
Confidence 44556665443332 23566777 788889999999999987 67999999999853
No 233
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=31.95 E-value=1.3e+02 Score=27.77 Aligned_cols=34 Identities=6% Similarity=0.022 Sum_probs=18.1
Q ss_pred EEEEe-ccchHHHHHHHHHHHHhCCCcEEEEEeCC
Q psy14385 152 VVLHF-IPLCSLINNHLSELAAKFPTTKFIKSIST 185 (228)
Q Consensus 152 VVVhf-~~~C~~l~~~L~~LA~kyp~~KFvkI~ad 185 (228)
+||.| |+.|+.....|+.|.+....+.++-||++
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS 113 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQKKSVDYYALDVS 113 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcCCCceEEEEECC
Confidence 45555 55555555555555544444555555554
No 234
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=31.63 E-value=79 Score=26.34 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=12.2
Q ss_pred ccchHHHHHHHHH
Q psy14385 157 IPLCSLINNHLSE 169 (228)
Q Consensus 157 ~~~C~~l~~~L~~ 169 (228)
||.|+.+.+.+..
T Consensus 89 Cp~C~~~~~~l~~ 101 (197)
T cd03020 89 CPYCRKLEKELKP 101 (197)
T ss_pred CccHHHHHHHHhh
Confidence 9999999999887
No 235
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=30.90 E-value=87 Score=27.70 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=14.2
Q ss_pred ccchHHHHHHHHHHHHh
Q psy14385 157 IPLCSLINNHLSELAAK 173 (228)
Q Consensus 157 ~~~C~~l~~~L~~LA~k 173 (228)
||.|+.+.+.+..+...
T Consensus 129 CpyC~kl~~~l~~~~~~ 145 (251)
T PRK11657 129 CPYCKQFWQQARPWVDS 145 (251)
T ss_pred ChhHHHHHHHHHHHhhc
Confidence 99999999988876654
No 236
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=30.13 E-value=58 Score=30.32 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=23.1
Q ss_pred cchHHHHHHHHHHHHhCCCcEEEEEeCC
Q psy14385 158 PLCSLINNHLSELAAKFPTTKFIKSIST 185 (228)
Q Consensus 158 ~~C~~l~~~L~~LA~kyp~~KFvkI~ad 185 (228)
...-.+...+.++|.+||+++|+-|+.-
T Consensus 103 ~~gf~~~d~~~~va~~~Pd~~F~iid~~ 130 (345)
T COG1744 103 GTGFAFSDALEKVAAEYPDVKFVIIDGV 130 (345)
T ss_pred EeccchhhHHHHHHHHCCCCEEEEecCc
Confidence 4455677889999999999999999873
No 237
>PF05361 PP1_inhibitor: PKC-activated protein phosphatase-1 inhibitor; InterPro: IPR008025 Contractility of vascular smooth muscle depends on phosphorylation of myosin light chains, and is modulated by hormonal control of myosin phosphatase activity. Signaling pathways activate kinases such as PKC or Rho-dependent kinases that phosphorylate the myosin phosphatase inhibitor protein called CPI-17. Phosphorylation of CPI-17 at Thr-38 enhances its inhibitory potency 1000-fold, creating a molecular switch for regulating contraction [].; GO: 0042325 regulation of phosphorylation, 0005737 cytoplasm; PDB: 2RLT_A 1J2M_A 1K5O_A 1J2N_A.
Probab=28.87 E-value=84 Score=26.14 Aligned_cols=42 Identities=29% Similarity=0.551 Sum_probs=24.7
Q ss_pred ccCCChhHHhhccChhcHHHHHHHHHHHHHHHHHHHhccCCCceEEeChhhHHHHHHh
Q psy14385 88 LGDMDLDDLDELEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEINGDTYVQEVNN 145 (228)
Q Consensus 88 ~e~~~ldeL~eledeeDd~~Le~yR~kRl~ELk~~~~~~~fG~V~eIs~edf~~eV~~ 145 (228)
-++.++|+|-++++|+ =|.++|+++-+.-.++ .++|+.++..
T Consensus 71 p~EIDIDeLLDl~sde-------eR~~~LqelL~~C~~p---------tE~FI~ELL~ 112 (144)
T PF05361_consen 71 PEEIDIDELLDLESDE-------ERRRKLQELLQDCPKP---------TEDFIQELLS 112 (144)
T ss_dssp -SSSHHHHHHCTSSTT-------HHHHHHHHHHTTCSST---------THHHHHHHHH
T ss_pred CCcccHHHHhcCCchH-------HHHHHHHHHHhhcCCC---------HHHHHHHHHH
Confidence 3478899998887543 2556666655432111 2678877653
No 238
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=28.82 E-value=44 Score=30.10 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCC
Q psy14385 163 INNHLSELAAKFPTTKFIKSISTT 186 (228)
Q Consensus 163 l~~~L~~LA~kyp~~KFvkI~ad~ 186 (228)
+...+..+|++||+++|+-++...
T Consensus 72 ~~~~~~~vA~~yPd~~F~~~d~~~ 95 (306)
T PF02608_consen 72 YSDALQEVAKEYPDTKFIIIDGYI 95 (306)
T ss_dssp GHHHHHHHHTC-TTSEEEEESS--
T ss_pred HHHHHHHHHHHCCCCEEEEEecCc
Confidence 446778999999999999988654
No 239
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=28.29 E-value=94 Score=27.91 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=27.8
Q ss_pred CCceEEEEe----ccchHHHHHHHHHHH----Hh-CCCcEEEEEeCCCC
Q psy14385 148 EGIWVVLHF----IPLCSLINNHLSELA----AK-FPTTKFIKSISTTC 187 (228)
Q Consensus 148 ~~~~VVVhf----~~~C~~l~~~L~~LA----~k-yp~~KFvkI~ad~~ 187 (228)
.|..+||-| |..|..-...|+.|. .+ |++|.|+-||....
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 345555555 999988666666655 33 68999999997653
No 240
>PF05047 L51_S25_CI-B8: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain ; InterPro: IPR007741 Proteins containing this domain are located in the mitochondrion and include ribosomal protein L51, and S25. This domain is also found in mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) 1.6.5.3 from EC. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins.; PDB: 1S3A_A.
Probab=28.22 E-value=1.6e+02 Score=19.23 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCCCCCCCCCCcEEEEEE-CCE
Q psy14385 163 INNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYF-EGK 206 (228)
Q Consensus 163 l~~~L~~LA~kyp~~KFvkI~ad~~~~~y~v~~LPTllvYk-~G~ 206 (228)
+...|..|+...|++.|.--...... |.++++. +|.
T Consensus 5 ~~~~lp~l~~~NP~v~~~v~~~~~~~--------P~~~~~y~~G~ 41 (52)
T PF05047_consen 5 LKNNLPTLKYHNPQVQFEVRRRRGRH--------PFLTAEYLNGR 41 (52)
T ss_dssp HHHTHHHHHHHSTT--EEEE---SSS---------EEEEEESS--
T ss_pred HHHhHHHHHHHCCCcEEEEEECCCCC--------CEEEEEEcCCC
Confidence 56789999999999999755422211 7776654 454
No 241
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=28.00 E-value=1.1e+02 Score=24.62 Aligned_cols=36 Identities=22% Similarity=0.114 Sum_probs=26.2
Q ss_pred ceEEEEe-----ccchHHH-HHHHHHHHHhCC--Cc-EEEEEeCC
Q psy14385 150 IWVVLHF-----IPLCSLI-NNHLSELAAKFP--TT-KFIKSIST 185 (228)
Q Consensus 150 ~~VVVhf-----~~~C~~l-~~~L~~LA~kyp--~~-KFvkI~ad 185 (228)
.+||+.| |+.|..- .+.|.....+|. ++ .++-|..+
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 4677766 9999986 888888888874 45 46666655
No 242
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=27.89 E-value=3.5e+02 Score=22.32 Aligned_cols=93 Identities=14% Similarity=0.273 Sum_probs=45.2
Q ss_pred HHHHHHHhccCCCceEEe-ChhhHHHHHHhcCCCceEEEEe-ccchHH--HHHHHHH-HH-HhCCCcEEEEEeCCC----
Q psy14385 117 AEMKAMAEKSRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF-IPLCSL--INNHLSE-LA-AKFPTTKFIKSISTT---- 186 (228)
Q Consensus 117 ~ELk~~~~~~~fG~V~eI-s~edf~~eV~~a~~~~~VVVhf-~~~C~~--l~~~L~~-LA-~kyp~~KFvkI~ad~---- 186 (228)
+-|++.....+ +.++ |.++-...+.+....+.|||+= |+ |.. ..|.... |. .+.|+ .++.+=+-.
T Consensus 7 ~pmR~ELt~~G---f~eL~T~e~Vd~~~~~~~GTtlVvVNSVCG-CAag~ARPa~~~al~~~kkPD-~lvTVFAGqDkEA 81 (136)
T PF06491_consen 7 QPMREELTRAG---FEELTTAEEVDEALKNKEGTTLVVVNSVCG-CAAGNARPAAAMALQNDKKPD-HLVTVFAGQDKEA 81 (136)
T ss_dssp HHHHHHHHTTT----EE--SHHHHHHHHHH--SEEEEEEE-SSH-HHHHTHHHHHHHHHHHSS--S-EEEEEETTTSHHH
T ss_pred HHHHHHHHHcC---ccccCCHHHHHHHHhCCCCcEEEEEecccc-ccccccCHHHHHHHhCCCCCC-ceEEeccCCCHHH
Confidence 44555544444 4555 5566666665343234556665 65 543 3333322 22 34465 444444432
Q ss_pred ------CCCCCCCCCCcEEEEEECCEEEeEEeCcc
Q psy14385 187 ------CIPNYPDKNLPTLFIYFEGKMQSQMVGPD 215 (228)
Q Consensus 187 ------~~~~y~v~~LPTllvYk~G~~v~~lvG~~ 215 (228)
....||- +-|++.+||||++++-+-.-+
T Consensus 82 t~~aR~yf~~~pP-SSPS~ALfKdGelvh~ieRh~ 115 (136)
T PF06491_consen 82 TAKAREYFEPYPP-SSPSIALFKDGELVHFIERHH 115 (136)
T ss_dssp HHHHHHTSTTS----SSEEEEEETTEEEEEE-GGG
T ss_pred HHHHHHhcCCCCC-CCchheeeeCCEEEEEeehhh
Confidence 1244444 569999999999998775433
No 243
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=27.59 E-value=69 Score=28.03 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHHHhCCCcEEEEEeCC
Q psy14385 159 LCSLINNHLSELAAKFPTTKFIKSIST 185 (228)
Q Consensus 159 ~C~~l~~~L~~LA~kyp~~KFvkI~ad 185 (228)
....+.+.+.+.|++||+++|+-++..
T Consensus 64 ~g~~~~~~~~~vA~~~p~~~F~~~d~~ 90 (258)
T cd06353 64 TSFGFMDAALKVAKEYPDVKFEHCSGY 90 (258)
T ss_pred CchhhhHHHHHHHHHCCCCEEEECCCC
Confidence 556778889999999999999998764
No 244
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=27.46 E-value=2.3e+02 Score=22.75 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=41.4
Q ss_pred eEEEEe--ccchHHHHHHHHHHHHhC-CCcEEEEEeCCC--C----CCCCCCCCCcEEEEEECCEEE
Q psy14385 151 WVVLHF--IPLCSLINNHLSELAAKF-PTTKFIKSISTT--C----IPNYPDKNLPTLFIYFEGKMQ 208 (228)
Q Consensus 151 ~VVVhf--~~~C~~l~~~L~~LA~ky-p~~KFvkI~ad~--~----~~~y~v~~LPTllvYk~G~~v 208 (228)
++++-+ ...++.+.+.|++||+.. |++.|.+--.+- | ..+...+ +|++++=.||=..
T Consensus 28 P~l~ilp~g~as~~~a~~l~~LA~sINp~I~i~r~G~s~~~clV~G~trp~~s-c~~fFiGSdGW~A 93 (131)
T PF14459_consen 28 PKLCILPSGEASSFQAQNLQSLARSINPRIEIRRSGSSPMHCLVIGSTRPKIS-CPRFFIGSDGWIA 93 (131)
T ss_pred ceEEEeecchhHHHHHHHHHHHHHhcCCCeEEEecCCCceEEEEecCCCCCcc-cceEEEcCCceee
Confidence 455555 788888999999999985 889986544332 3 2554454 9999998888543
No 245
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=26.85 E-value=75 Score=25.32 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=32.4
Q ss_pred eccchHHHHHHHHHHHHhCCCcEEEEEeCCC----CCCCC--CCCCCcEEEEEE
Q psy14385 156 FIPLCSLINNHLSELAAKFPTTKFIKSISTT----CIPNY--PDKNLPTLFIYF 203 (228)
Q Consensus 156 f~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~----~~~~y--~v~~LPTllvYk 203 (228)
||+.|..|.-.|...-.--..+...+|+... .+.-. .-.++|+|++=.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 3999999999887655544567778887665 22223 346889876533
No 246
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=26.61 E-value=2.5e+02 Score=22.03 Aligned_cols=48 Identities=21% Similarity=0.154 Sum_probs=30.3
Q ss_pred hhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEe
Q psy14385 136 GDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSI 183 (228)
Q Consensus 136 ~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ 183 (228)
.+++.+.+...+++..|++-- -..-..++..+.++|++|+++.|+-..
T Consensus 66 ~~nl~~ii~~~~~~~~ivlv~~~~~~~~~~~~n~~~~~~a~~~~~v~~id~~ 117 (150)
T cd01840 66 KDQLDELLDALGPDRQVYLVNPHVPRPWEPDVNAYLLDAAKKYKNVTIIDWY 117 (150)
T ss_pred HHHHHHHHHHcCCCCEEEEEECCCCcchHHHHHHHHHHHHHHCCCcEEecHH
Confidence 455655555554334433322 222357889999999999999987653
No 247
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=26.01 E-value=1.3e+02 Score=25.30 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=37.1
Q ss_pred ChhhHHHHHHhcCCCceEEEEe----ccchHHHHH-HHHH--HHHhCCCcEE--EEEeCCCCC---CCC--------CCC
Q psy14385 135 NGDTYVQEVNNAGEGIWVVLHF----IPLCSLINN-HLSE--LAAKFPTTKF--IKSISTTCI---PNY--------PDK 194 (228)
Q Consensus 135 s~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~-~L~~--LA~kyp~~KF--vkI~ad~~~---~~y--------~v~ 194 (228)
+.+-|...-. . +++|+|++ |.-|..|.. .|+. +|. +-+-.| ||+|.++-+ ..| +..
T Consensus 26 ~~ea~~~Ak~-e--~KpIfl~ig~~~C~wChvM~~esf~d~eVa~-~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~g 101 (163)
T PF03190_consen 26 GEEALEKAKK-E--NKPIFLSIGYSWCHWCHVMERESFSDPEVAE-YLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSG 101 (163)
T ss_dssp SHHHHHHHHH-H--T--EEEEEE-TT-HHHHHHHHHTTT-HHHHH-HHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS--
T ss_pred CHHHHHHHHh-c--CCcEEEEEEecCCcchhhhcccCcCCHHHHH-HHhCCEEEEEeccccCccHHHHHHHHHHHhcCCC
Confidence 3344544433 3 36888888 999999986 3322 222 222345 467777632 233 678
Q ss_pred CCcEEEEEE-CCEEEeEEeC
Q psy14385 195 NLPTLFIYF-EGKMQSQMVG 213 (228)
Q Consensus 195 ~LPTllvYk-~G~~v~~lvG 213 (228)
+-|+.++.- +|+++-.-..
T Consensus 102 GwPl~vfltPdg~p~~~~tY 121 (163)
T PF03190_consen 102 GWPLTVFLTPDGKPFFGGTY 121 (163)
T ss_dssp -SSEEEEE-TTS-EEEEESS
T ss_pred CCCceEEECCCCCeeeeeee
Confidence 899877665 5777765433
No 248
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=24.72 E-value=1.4e+02 Score=30.22 Aligned_cols=84 Identities=12% Similarity=0.133 Sum_probs=47.0
Q ss_pred CCChhHH-hhccChhcHHHHHHHHHHHHHHHHHHHhc-cC-CCceEEeChhhHHHHHH--hcCCCceEEEEeccchHHHH
Q psy14385 90 DMDLDDL-DELEDEEDERVLQEYRRKRIAEMKAMAEK-SR-FGRVLEINGDTYVQEVN--NAGEGIWVVLHFIPLCSLIN 164 (228)
Q Consensus 90 ~~~ldeL-~eledeeDd~~Le~yR~kRl~ELk~~~~~-~~-fG~V~eIs~edf~~eV~--~a~~~~~VVVhf~~~C~~l~ 164 (228)
+||-+|. +|.-+.|-|..+..-|+++.+|+.+.... .. --.|+-.+...|-=.+. ......|+|| +..-..+.
T Consensus 477 kMskqEvK~E~Ke~EGdP~iK~r~R~~~re~~~~~m~~~V~~AdvVitNPTH~AVAL~Y~~~~~~aP~Vv--AKG~d~~A 554 (609)
T PRK12772 477 RMTKQEVKEEYKQDEGDPQIKAKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALKYEEGKDEAPKVV--AKGADYVA 554 (609)
T ss_pred CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhccCCCCcEEEECCCceEEEeEeCCCCCCCCEEE--EeeCcHHH
Confidence 6788887 45555567788998888888888775432 11 11232223322211110 0000122332 34556788
Q ss_pred HHHHHHHHhCC
Q psy14385 165 NHLSELAAKFP 175 (228)
Q Consensus 165 ~~L~~LA~kyp 175 (228)
..++++|++|.
T Consensus 555 ~~Ir~~A~e~~ 565 (609)
T PRK12772 555 LKIKEIAKEND 565 (609)
T ss_pred HHHHHHHHHCC
Confidence 89999999984
No 249
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=23.98 E-value=2.8e+02 Score=25.01 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=43.6
Q ss_pred cCCC-ceEEeChhhHHHHHHhcCCCceEEEEe----ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCCCCCCCcEEE
Q psy14385 126 SRFG-RVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLF 200 (228)
Q Consensus 126 ~~fG-~V~eIs~edf~~eV~~a~~~~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~~~y~v~~LPTll 200 (228)
..+| ....++..++. .. |++.|++. ||-|..-+=.|-..-.+|......-..++ +.=...++|||+
T Consensus 40 v~~~~~~~kvsn~d~~----~~--Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~---~~d~~pn~Ptl~ 110 (249)
T PF06053_consen 40 VPIGSNFFKVSNQDLA----PN--GKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSD---PYDNYPNTPTLI 110 (249)
T ss_pred cCCCcceeeecCcccC----CC--CeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecC---cccCCCCCCeEE
Confidence 4466 67777765532 23 45666666 99999988777777777886633222222 122346899998
Q ss_pred EEEC
Q psy14385 201 IYFE 204 (228)
Q Consensus 201 vYk~ 204 (228)
+..-
T Consensus 111 F~~~ 114 (249)
T PF06053_consen 111 FNNY 114 (249)
T ss_pred EecC
Confidence 7654
No 250
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=23.43 E-value=85 Score=25.43 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=0.0
Q ss_pred CCCCCCCcEEEEEECCEEEeEEeC
Q psy14385 190 NYPDKNLPTLFIYFEGKMQSQMVG 213 (228)
Q Consensus 190 ~y~v~~LPTllvYk~G~~v~~lvG 213 (228)
.+++.++||++|+.++. .+.++.
T Consensus 164 ~~gv~g~Ptfvv~~~~~-~~~~~~ 186 (193)
T cd03025 164 ELGINGFPTLVLEDDNG-EGILLT 186 (193)
T ss_pred HcCCCccCEEEEEeCCe-EEEecC
No 251
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.27 E-value=1.2e+02 Score=18.82 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=15.6
Q ss_pred hHHHHHcCCCCCCCCCCChhHHHH
Q psy14385 48 NDILRAKGIIPQKEKEVTEDDIVN 71 (228)
Q Consensus 48 nDilrk~Gi~p~k~~~~~~~~~~~ 71 (228)
..-|.+|||.+++.. .+-+++.+
T Consensus 10 ~~wL~~~gi~~~~~~-~~rd~Ll~ 32 (38)
T PF10281_consen 10 KSWLKSHGIPVPKSA-KTRDELLK 32 (38)
T ss_pred HHHHHHcCCCCCCCC-CCHHHHHH
Confidence 456888999888665 35655543
No 252
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=23.22 E-value=2.6e+02 Score=22.53 Aligned_cols=66 Identities=8% Similarity=0.094 Sum_probs=36.8
Q ss_pred hhHHHHHHhcCCCceEEE-Ee-ccchHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCCCCCCCcEEEEEECCE
Q psy14385 137 DTYVQEVNNAGEGIWVVL-HF-IPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGK 206 (228)
Q Consensus 137 edf~~eV~~a~~~~~VVV-hf-~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~~~y~v~~LPTllvYk~G~ 206 (228)
.+|+.+..+.+ .++|+ =| ...-+.....+..|..+-....| .||.. .-.+|+|..+|++++.+++.
T Consensus 15 k~l~~~a~~~g--~~~VlRG~~~~~~~~T~~~i~~L~~~~~~~~v-~IdP~-lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 15 KQLLDQAEALG--APLVIRGLLDNGFKATATRIQSLIKDGGKSGV-QIDPQ-WFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred HHHHHHHHHhC--CeEEEeCCCCCCHHHHHHHHHHHHhcCCCCcE-EEChH-HHhhcCceEcCEEEEECCCC
Confidence 35666666553 22222 12 33334455555555554433221 23322 23789999999999999984
No 253
>PF09803 DUF2346: Uncharacterized conserved protein (DUF2346); InterPro: IPR018625 Members of this family of proteins have no known function.
Probab=22.89 E-value=46 Score=24.81 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=23.5
Q ss_pred hhhhccccccCceeccCCCCCCCccchHHHHHcCCCCCC
Q psy14385 22 ILSLNLSVPFGAVVNLKPNYEEDTQWNDILRAKGIIPQK 60 (228)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~edTewnDilrk~Gi~p~k 60 (228)
+.|+|.+.|.|+-. +=.+|.-=-+| =+.++..++||-
T Consensus 10 Kfg~Yv~fPI~~~~-~fN~pe~f~~~-v~~~~~~~~ppe 46 (80)
T PF09803_consen 10 KFGMYVFFPIGMFY-YFNQPEWFEKW-VIKRKRELYPPE 46 (80)
T ss_pred HHHHHHHHHHHHHH-hcCCcHHHHHH-hHHHhcccCCCC
Confidence 57889999999644 32333322233 356788899883
No 254
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.23 E-value=1.9e+02 Score=27.33 Aligned_cols=84 Identities=17% Similarity=0.132 Sum_probs=46.8
Q ss_pred CCChhHH-hhccChhcHHHHHHHHHHHHHHHHHHHhc-cC-CCceEEeChhhHHHHHHh--cCCCceEEEEeccchHHHH
Q psy14385 90 DMDLDDL-DELEDEEDERVLQEYRRKRIAEMKAMAEK-SR-FGRVLEINGDTYVQEVNN--AGEGIWVVLHFIPLCSLIN 164 (228)
Q Consensus 90 ~~~ldeL-~eledeeDd~~Le~yR~kRl~ELk~~~~~-~~-fG~V~eIs~edf~~eV~~--a~~~~~VVVhf~~~C~~l~ 164 (228)
.||-+|. +|.-+.|-|..+..-|+++.+|+.+.... .. --.|+-.+...|--.+.= .....|+|| +.....+.
T Consensus 221 kMskqEVKdE~Ke~EGdP~iK~rrR~~~re~a~~~m~~~V~~AdVVItNPTH~AVal~Y~~~~~~aP~vv--akg~~~~A 298 (359)
T PRK05702 221 KMTKQEVKDEHKQSEGDPEVKGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVV--AKGVDEVA 298 (359)
T ss_pred CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhHHhhcCCCCcEEEECCCceEEEeEeCCCCCCCCEEE--EeeCcHHH
Confidence 6788887 45555567788998888888888765432 11 112222232222211110 000112222 45566788
Q ss_pred HHHHHHHHhCC
Q psy14385 165 NHLSELAAKFP 175 (228)
Q Consensus 165 ~~L~~LA~kyp 175 (228)
..+.++|+++.
T Consensus 299 ~~i~~~A~~~~ 309 (359)
T PRK05702 299 LKIREIAREHN 309 (359)
T ss_pred HHHHHHHHHcC
Confidence 88999999884
No 255
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.04 E-value=1.9e+02 Score=27.67 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=47.0
Q ss_pred CCChhHH-hhccChhcHHHHHHHHHHHHHHHHHHHhc-cC-CCceEEeChhhHHHHHH--hcCCCceEEEEeccchHHHH
Q psy14385 90 DMDLDDL-DELEDEEDERVLQEYRRKRIAEMKAMAEK-SR-FGRVLEINGDTYVQEVN--NAGEGIWVVLHFIPLCSLIN 164 (228)
Q Consensus 90 ~~~ldeL-~eledeeDd~~Le~yR~kRl~ELk~~~~~-~~-fG~V~eIs~edf~~eV~--~a~~~~~VVVhf~~~C~~l~ 164 (228)
.||-+|. +|.-+.|-|..+..-|+++.+|+.+.... .. --.|+-.+...|-=.+. ......|+|| +..-..+.
T Consensus 221 kMSkqEvKdE~K~~EGdP~iK~r~Rq~~re~a~~~m~~~V~~AdVVItNPTH~AVALkY~~~~~~AP~Vv--AKG~d~~A 298 (386)
T PRK12468 221 RMTKQDIRDEFKNQEGDPHVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVL--AKGAGAVA 298 (386)
T ss_pred CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhHhhcCCCCcEEEECCCceEEEEEeCCCCCCCCEEE--EeeCcHHH
Confidence 6788887 45545567788999999998888765431 11 12232223222211110 0000112322 34556788
Q ss_pred HHHHHHHHhCC
Q psy14385 165 NHLSELAAKFP 175 (228)
Q Consensus 165 ~~L~~LA~kyp 175 (228)
..+.++|++|.
T Consensus 299 ~~Ir~~A~e~~ 309 (386)
T PRK12468 299 LRIRELGAEHR 309 (386)
T ss_pred HHHHHHHHHcC
Confidence 89999999984
No 256
>cd00643 HMG-CoA_reductase_classI Class I hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class I enzyme, homotetramer. Catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals this is the rate limiting committed step in cholesterol biosynthesis. Class I enzymes are found predominantly in eukaryotes and contain N-terminal membrane regions. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR are divergent in their N-terminal regions, but are conserved in their active site. In contrast, human and bacterial HMGR differ in their active site architecture.
Probab=22.00 E-value=6.7e+02 Score=24.26 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHh-ccCCCceEEeChhhHHHHHHhcCCCceEEEEe-ccchH---------HHHHHHHHHHH
Q psy14385 104 DERVLQEYRRKRIAEMKAMAE-KSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF-IPLCS---------LINNHLSELAA 172 (228)
Q Consensus 104 Dd~~Le~yR~kRl~ELk~~~~-~~~fG~V~eIs~edf~~eV~~a~~~~~VVVhf-~~~C~---------~l~~~L~~LA~ 172 (228)
|-..+.+|-.....++++.+. ..+||.+.+|+..- .+ ..|.++| +..|. ....+...|..
T Consensus 139 ~a~~~~~wi~~~~~~i~~~a~stsr~g~l~~i~~~~-------~g--~~v~lrf~~~TgDAMG~NMv~~~~e~v~~~i~~ 209 (403)
T cd00643 139 EAAEFKAWIEENFEAIKEVAESTSRHARLQSIKPYI-------AG--RSVYLRFEYTTGDAMGMNMVTKATEAACDWIEE 209 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCcccceEEEEe-------cC--CEEEEEEEEEcCcchhhhHHHHHHHHHHHHHHH
Confidence 444566666678888888764 58999999996531 22 4789999 33333 23344445556
Q ss_pred hCCCcEEEEEeCCCCC
Q psy14385 173 KFPTTKFIKSISTTCI 188 (228)
Q Consensus 173 kyp~~KFvkI~ad~~~ 188 (228)
.+|....+.|.++-|.
T Consensus 210 ~~~~~~~~~i~gN~~t 225 (403)
T cd00643 210 NFPDMEVISLSGNFCT 225 (403)
T ss_pred hCCCceEEEEeccccc
Confidence 7787666666665554
No 257
>PRK08156 type III secretion system protein SpaS; Validated
Probab=21.87 E-value=1.9e+02 Score=27.46 Aligned_cols=84 Identities=15% Similarity=0.124 Sum_probs=45.0
Q ss_pred CCChhHH-hhccChhcHHHHHHHHHHHHHHHHHHHhc-cC-CCceEEeChhhHHHHHH--hcCCCceEEEEeccchHHHH
Q psy14385 90 DMDLDDL-DELEDEEDERVLQEYRRKRIAEMKAMAEK-SR-FGRVLEINGDTYVQEVN--NAGEGIWVVLHFIPLCSLIN 164 (228)
Q Consensus 90 ~~~ldeL-~eledeeDd~~Le~yR~kRl~ELk~~~~~-~~-fG~V~eIs~edf~~eV~--~a~~~~~VVVhf~~~C~~l~ 164 (228)
.||-+|. +|.-+.|-|..+..-|+++.+|+.+.... .. --.|+-.+...|-=.+. ......|+|| +..-..+.
T Consensus 209 kMSkqEvKdE~Ke~EGdP~iK~r~R~~~re~a~~rm~~~Vp~AdVVItNPTH~AVALkYd~~~~~AP~Vv--AKG~d~~A 286 (361)
T PRK08156 209 KMDKQEVKREYKEQEGNPEIKSKRREAHQEILSEQVKSDIRNSRLIVANPTHIAIGIYFNPELAPIPFIS--VRETNQRA 286 (361)
T ss_pred CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhHHhccCCCCcEEEECCCeEEEEEEecCCCCCCCEEE--EecCcHHH
Confidence 6788887 45545567788888888888888775432 11 11122112221110000 0000112222 34456788
Q ss_pred HHHHHHHHhCC
Q psy14385 165 NHLSELAAKFP 175 (228)
Q Consensus 165 ~~L~~LA~kyp 175 (228)
..+.++|++|.
T Consensus 287 ~~IreiA~e~~ 297 (361)
T PRK08156 287 LAVRAYAEKVG 297 (361)
T ss_pred HHHHHHHHHCC
Confidence 99999999984
No 258
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=21.76 E-value=46 Score=29.12 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=21.3
Q ss_pred ceEEEEe----ccchHHHHHHHHHHHHhCCCcEEE
Q psy14385 150 IWVVLHF----IPLCSLINNHLSELAAKFPTTKFI 180 (228)
Q Consensus 150 ~~VVVhf----~~~C~~l~~~L~~LA~kyp~~KFv 180 (228)
..+|+-| ||.|+.+.+.+..+-..--.++|+
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~ 142 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDYNALGITVRYL 142 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 3445545 999999999999886543334443
No 259
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=21.71 E-value=1.5e+02 Score=26.18 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=26.5
Q ss_pred CCCceEEEEe---------ccchHHHHHHH-HHHHHhC-CCcEEEEEe
Q psy14385 147 GEGIWVVLHF---------IPLCSLINNHL-SELAAKF-PTTKFIKSI 183 (228)
Q Consensus 147 ~~~~~VVVhf---------~~~C~~l~~~L-~~LA~ky-p~~KFvkI~ 183 (228)
+....+|.|| |+.|..+..++ ..++.-. .++.|+-|-
T Consensus 66 Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vS 113 (211)
T PF05988_consen 66 GRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVS 113 (211)
T ss_pred CCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEe
Confidence 3457889999 99999998888 4454443 347777554
No 260
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=21.18 E-value=88 Score=21.64 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=27.2
Q ss_pred cchHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCCCCCCCcEEEEEECCEEEeE
Q psy14385 158 PLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQ 210 (228)
Q Consensus 158 ~~C~~l~~~L~~LA~kyp~~KFvkI~ad~~~~~y~v~~LPTllvYk~G~~v~~ 210 (228)
+....+...++.|+.+||... ..+.+.++.||+.+..
T Consensus 19 ~~~~tv~~ll~~l~~~~p~~~----------------~~~~~~v~vN~~~v~~ 55 (77)
T PF02597_consen 19 PEGSTVRDLLEALAERYPELA----------------LRDRVAVAVNGEIVPD 55 (77)
T ss_dssp SSTSBHHHHHHHHCHHTGGGH----------------TTTTEEEEETTEEEGG
T ss_pred CCCCcHHHHHHHHHhhccccc----------------cCccEEEEECCEEcCC
Confidence 456678899999999998655 4456677777766655
No 261
>PRK06298 type III secretion system protein; Validated
Probab=20.85 E-value=2.1e+02 Score=26.98 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=47.6
Q ss_pred CCChhHH-hhccChhcHHHHHHHHHHHHHHHHHHHhc-cC-CCceEEeChhhHHHHHH--hcCCCceEEEEeccchHHHH
Q psy14385 90 DMDLDDL-DELEDEEDERVLQEYRRKRIAEMKAMAEK-SR-FGRVLEINGDTYVQEVN--NAGEGIWVVLHFIPLCSLIN 164 (228)
Q Consensus 90 ~~~ldeL-~eledeeDd~~Le~yR~kRl~ELk~~~~~-~~-fG~V~eIs~edf~~eV~--~a~~~~~VVVhf~~~C~~l~ 164 (228)
.||-+|. +|.-+.|-|..+..-|+++.+||.+.... .. -..|+-.+...|-=.+. ......|+|| +..-..+.
T Consensus 215 kMSkqEvKdE~K~~EGdP~iK~rrR~~~re~~~~~m~~~V~~AdVVItNPTH~AVALkYd~~~~~AP~Vv--AKG~d~~A 292 (356)
T PRK06298 215 KMEKFEVKQEFKDTEGNPEIKGRRRQIAQEIAYEDTSSQVKHASAVVSNPKDIAVAIGYMPEKYKAPWII--AMGINLRA 292 (356)
T ss_pred CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhHHhhcCCCCcEEEECCCceEEEeEeCCCCCCCCEEE--EeeCcHHH
Confidence 6888888 45555567788888888888888775432 11 12233223332211110 0000123333 34556788
Q ss_pred HHHHHHHHhCC
Q psy14385 165 NHLSELAAKFP 175 (228)
Q Consensus 165 ~~L~~LA~kyp 175 (228)
..+.++|++|.
T Consensus 293 ~~Ir~iA~e~~ 303 (356)
T PRK06298 293 KRIIAEAEKYG 303 (356)
T ss_pred HHHHHHHHHcC
Confidence 99999999984
No 262
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=20.00 E-value=2.2e+02 Score=19.20 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=30.2
Q ss_pred EEEe--ccchHHHHHHHHHHHHhCCCcEEEEEeCCC----CCCCCCCCCCcEEEEEECCEEE
Q psy14385 153 VLHF--IPLCSLINNHLSELAAKFPTTKFIKSISTT----CIPNYPDKNLPTLFIYFEGKMQ 208 (228)
Q Consensus 153 VVhf--~~~C~~l~~~L~~LA~kyp~~KFvkI~ad~----~~~~y~v~~LPTllvYk~G~~v 208 (228)
+-++ |+.|..+.-.|...-- ...++.++... ...-.|...+|+|.. .+|..+
T Consensus 3 ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~l 60 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTVI 60 (71)
T ss_pred EEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcEE
Confidence 4445 8999888766655433 23445555432 123347789999953 346554
Done!