RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14385
(228 letters)
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 130 bits (329), Expect = 5e-38
Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 8/181 (4%)
Query: 45 TQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELEDEED 104
W E Q+ +K K + +D+ED
Sbjct: 14 NDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELIHQDKED 73
Query: 105 ERVLQEYRRKRIAEMK-AMAEKSRFGRVLEIN-GDTYVQEVNNAGEGIWVVLHF----IP 158
E L++YRR+ + +M ++ R+G V E+ G+ +++ + + +V++ +
Sbjct: 74 EGCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVR 133
Query: 159 LCSLINNHLSELAAKFPTTKFIK--SISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDE 216
C +N+ L LAA++P KF K + +T + LPTL +Y G++ S + E
Sbjct: 134 GCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFISVAE 193
Query: 217 F 217
Sbjct: 194 Q 194
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 113 bits (284), Expect = 4e-31
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 74 EQTVKEKQGKGEKELGDMDLDDLDELEDEEDERVLQEYRRKRIAEMK-AMAEKSRFGRVL 132
Q+ +K K + +D+EDE L++YRR+ + +M ++ R+G V
Sbjct: 56 PQSRDDKDSKERFSRKMSVQEYELIHKDKEDENCLRKYRRQCMQDMHQKLSFGPRYGFVY 115
Query: 133 EIN-GDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIK--SIST 185
E+ G+ +++ + + +V+H I C +N+ L LAA++P KF K + +T
Sbjct: 116 ELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASNT 175
Query: 186 TCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEF 217
+ LPTL +Y G++ S + E
Sbjct: 176 GAGDRFSSDVLPTLLVYKGGELLSNFISVTEQ 207
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 103 bits (258), Expect = 2e-28
Identities = 43/101 (42%), Positives = 66/101 (65%), Gaps = 4/101 (3%)
Query: 121 AMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPT 176
+ +FG + EI+G+ YV EV NA + +WVV+H +P+C ++N HLS LA KFP
Sbjct: 2 SSGSSGKFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPE 61
Query: 177 TKFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEF 217
TKF+K+I +CI +Y D LPT+F+Y G+++ + +G E
Sbjct: 62 TKFVKAIVNSCIEHYHDNCLPTIFVYKNGQIEGKFIGIIEC 102
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 102 bits (255), Expect = 4e-28
Identities = 45/95 (47%), Positives = 66/95 (69%), Gaps = 4/95 (4%)
Query: 127 RFGRVLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKS 182
+FG + EI+G+ YV EV NA E +WV++H IP+C L+N HLS LA KFP TKF+K+
Sbjct: 1 KFGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKA 60
Query: 183 ISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEF 217
I +CI +Y D LPT+F+Y G+++++ +G E
Sbjct: 61 IVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGIIEC 95
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 40.4 bits (95), Expect = 5e-05
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 129 GRVLEINGDTYVQEVNNAGEGIWVVLHFI-----PLCSLINNHLSELAAKFPTTKFIKSI 183
G+V E+N DT+ V AG+ VVL P + +LA ++ F+K
Sbjct: 5 GKVTEVNKDTFWPIVKAAGDKP-VVLDMFTQWCGP-SKAMAPKYEKLAEEYLDVIFLKLD 62
Query: 184 STTCIPNYPDK----NLPTLFIYFEGKMQSQMVG 213
+ +PT I E + ++ G
Sbjct: 63 CNQENKTLAKELGIRVVPTFKILKENSVVGEVTG 96
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 39.7 bits (93), Expect = 1e-04
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 16/106 (15%)
Query: 117 AEMKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHFI-----PLCSLINNHLSELA 171
EM+A+ G+V E+N DT+ V AG+ VVL P C + +LA
Sbjct: 11 QEMEAIV-----GKVTEVNKDTFWPIVKAAGDKP-VVLDMFTQWCGP-CKAMAPKYEKLA 63
Query: 172 AKFPTTKFIKSISTTCIPNYPDK----NLPTLFIYFEGKMQSQMVG 213
++ F+K + +PT I E + ++ G
Sbjct: 64 EEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTG 109
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 38.1 bits (89), Expect = 4e-04
Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 19/111 (17%)
Query: 119 MKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF-----IPLCSLINNHLSELAAK 173
M+ G V +I T QE +A VV+ F P +I L+ K
Sbjct: 1 MRGSHHHHHHGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGP-SKMIKPFFHSLSEK 59
Query: 174 FPTTKFIK-------SISTTC-IPNYPDKNLPTLFIYFEGKMQSQMVGPDE 216
+ F++ +++ C + K++PT + +G+ + G ++
Sbjct: 60 YSNVIFLEVDVDDCQDVASECEV-----KSMPTFQFFKKGQKVGEFSGANK 105
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 38.3 bits (89), Expect = 5e-04
Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 119 MKAMAEKSRFGRVLEINGDT-YVQEVNNAGEGIWVVLHFI----PLCSLINNHLSELAAK 173
M A A ++ V E+ + + + + + +V+HF P C+ +N ++ELA +
Sbjct: 2 MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSL-LVVHFWAPWAPQCAQMNEVMAELAKE 60
Query: 174 FPTTKFIK-------SISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDE 216
P F+K +S Y ++PT + + ++ G
Sbjct: 61 LPQVSFVKLEAEGVPEVSEK----YEISSVPTFLFFKNSQKIDRLDGAHA 106
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.001
Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 74/204 (36%)
Query: 10 KEERLIKSARNQILSLNLSVPFGAVVNLKPNYEEDTQ----------WNDILRAKGIIPQ 59
K E++ K S G +++ TQ + D L++KG+IP
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKG-LLSATQF----TQPALTLMEKAAFED-LKSKGLIPA 1755
Query: 60 KEK-------E------VTE----DDIVNLVE------QTVKEKQGKGEKELGDMDLDD- 95
E + + + +V +V Q + G G + ++
Sbjct: 1756 DATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 96 --LDELEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEI-N----GDTYV-----QEV 143
E + V++ R+ + R G ++EI N YV + +
Sbjct: 1816 RVAASFSQEALQYVVE-----RVGK--------RTGWLVEIVNYNVENQQYVAAGDLRAL 1862
Query: 144 NNAGEGIWVVLHF-----IPLCSL 162
+ VL+F I + L
Sbjct: 1863 DTVTN----VLNFIKLQKIDIIEL 1882
Score = 28.9 bits (64), Expect = 1.7
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 20/62 (32%)
Query: 169 ELAAKFPTTKFIKS-ISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDEF-RTNLSCDAN 226
EL KF ++ S + + + + D+ L FE + + N +
Sbjct: 59 ELVGKF--LGYVSSLVEPSKVGQF-DQVLNLCLTEFE----------NCYLEGN-----D 100
Query: 227 VH 228
+H
Sbjct: 101 IH 102
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 34.2 bits (79), Expect = 0.007
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 21/109 (19%)
Query: 122 MAEKSRFGRVLEINGD-TYVQEVNNAGE-GIWVVLHF-----IPLCSLINNHLSELAAKF 174
MA + G V+ + + + N + G V++ F P C +I +E A KF
Sbjct: 1 MAAEE--GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGP-CRVIAPVFAEYAKKF 57
Query: 175 PTTKFIK-------SISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDE 216
P F+K ++ Y + +PT +G+ +VG +
Sbjct: 58 PGAIFLKVDVDELKDVAEA----YNVEAMPTFLFIKDGEKVDSVVGGRK 102
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 33.5 bits (77), Expect = 0.014
Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 23/101 (22%)
Query: 129 GRVLEING----DTYVQEVNNAGEGIWVVLHF-----IPLCSLINNHLSELAAKFPTTKF 179
G+V+ + + ++ + + +V+ F P C +I +ELA KFP F
Sbjct: 4 GQVIACHTVDTWKEHFEKGKGSQK--LIVVDFTASWCPP-CKMIAPIFAELAKKFPNVTF 60
Query: 180 IK-------SISTTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
+K +++ + + +PT +GK+ + VG
Sbjct: 61 LKVDVDELKAVAEE----WNVEAMPTFIFLKDGKLVDKTVG 97
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 33.0 bits (76), Expect = 0.018
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 19/99 (19%)
Query: 131 VLEINGDTYVQEVNNAGEGIWVVLHF-----IPLCSLINNHLSELAAKFPTTKFIK---- 181
V +I T QE +A VV+ F P C +I L+ K+ F++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGP-CKMIKPFFHSLSEKYSNVIFLEVDVD 60
Query: 182 ---SISTTC-IPNYPDKNLPTLFIYFEGKMQSQMVGPDE 216
+++ + K++PT + +G+ + G ++
Sbjct: 61 DCQDVASESEV-----KSMPTFQFFKKGQKVGEFSGANK 94
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 33.1 bits (76), Expect = 0.019
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 25/108 (23%)
Query: 129 GRVLEING----DTYVQEVNNAGEGIWVVLHF-----IPLCSLINNHLSELAAKFPTTKF 179
V+ ++ ++E N A + VV+ F P C ++ ++LA KFP F
Sbjct: 12 AEVISVHSLEQWTMQIEEANTAKK--LVVIDFTASWCGP-CRIMAPVFADLAKKFPNAVF 68
Query: 180 IK-------SISTTCIPNYPDKNLPTLFIYFEGKMQSQMVG--PDEFR 218
+K I+ + + +PT EG ++ ++VG +E
Sbjct: 69 LKVDVDELKPIAEQ----FSVEAMPTFLFMKEGDVKDRVVGAIKEELT 112
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.027
Identities = 34/279 (12%), Positives = 73/279 (26%), Gaps = 92/279 (32%)
Query: 10 KEERLIKSARNQILSLNLSVPFGAVVNLKPNYEEDTQWNDILRAKGIIPQKEKEVTEDDI 69
+ + L + LS+ + W++ K V D +
Sbjct: 314 RPQDLPREVL-TTNPRRLSI-IAESIRDGLA-----TWDNW-----------KHVNCDKL 355
Query: 70 VNLVEQTVKEKQGKGEKELGDMDL----DDLD-----------ELEDEEDERVLQEYRRK 114
++E ++ + +++ D L ++ + V+ + +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFD-RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 115 RIAEMKAMAEKSRFGRVLEING--DTYVQEVNNAGEGIWVVLH----------------- 155
+ EK + I ++ N LH
Sbjct: 415 S------LVEKQPKESTISIPSIYLELKVKLENEYA-----LHRSIVDHYNIPKTFDSDD 463
Query: 156 FIPL------CSLINNHL-----SELAAKFPTT----KFI--KSISTTCIPNYPDKNLPT 198
IP S I +HL E F +F+ K + N L T
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 199 L--FIYFEGKMQ------SQMVGPDEFRTNL-SCDANVH 228
L +++ + ++V + L + N+
Sbjct: 524 LQQLKFYKPYICDNDPKYERLV--NAILDFLPKIEENLI 560
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 32.8 bits (75), Expect = 0.034
Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 23/124 (18%)
Query: 112 RRKRIAEMKAMAEKSRFGRVLEI-NGDTYVQEVNNAGE-GIWVVLHF-----IPLCSLIN 164
+R A+ + G V I + + Q+++ A G V+ +F P I
Sbjct: 7 KRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGP-SRQIA 65
Query: 165 NHLSELAAKFPTTKFIK-------SISTTC-IPNYPDKNLPTLFIYFEGKMQSQMVG--P 214
+ EL+ +P+ F+ S + I K PT F +G+ ++VG
Sbjct: 66 PYYIELSENYPSLMFLVIDVDELSDFSASWEI-----KATPTFFFLRDGQQVDKLVGANK 120
Query: 215 DEFR 218
E
Sbjct: 121 PELH 124
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 32.4 bits (74), Expect = 0.035
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 25/115 (21%)
Query: 115 RIAEMKAMAEKSRFGRVLEING----DTYVQEVNNAGEGIWVVLHF-----IPLCSLINN 165
MA + G+V+ + + +Q+ N + VV+ F P C I
Sbjct: 4 HHHHHLEMASEE--GQVIACHTVETWNEQLQKANESKT--LVVVDFTASWCGP-CRFIAP 58
Query: 166 HLSELAAKFPTTKFIK-------SISTTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
++LA K P F+K S+++ + + +PT EGK+ ++VG
Sbjct: 59 FFADLAKKLPNVLFLKVDTDELKSVASD----WAIQAMPTFMFLKEGKILDKVVG 109
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 32.4 bits (74), Expect = 0.037
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 19/106 (17%)
Query: 120 KAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHFI-----PLCSLINNHLSELAAKF 174
+ ++R+ V+++ + + + E I V F P C I + ++A +F
Sbjct: 10 HGIRMRARYPSVVDVYSVEQFRNIMS--EDILTVAWFTAVWCGP-CKTIERPMEKIAYEF 66
Query: 175 PTTKFIK-------SISTTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
PT KF K I + LPT I GKM ++G
Sbjct: 67 PTVKFAKVDADNNSEIVS----KCRVLQLPTFIIARSGKMLGHVIG 108
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 32.4 bits (74), Expect = 0.046
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 21/112 (18%)
Query: 116 IAEMKAMAEKSRFGRVLEI-NGDTYVQEVNNAGEG-IWVVLHF-----IPLCSLINNHLS 168
+A + MA + G V+ N D + ++ A E V++ F P C I +
Sbjct: 3 MAAEEGMAAEE--GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGP-CRFIAPVFA 59
Query: 169 ELAAKFPTTKFIK-------SISTTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
E A KFP F+K ++ Y + +PT +G ++VG
Sbjct: 60 EYAKKFPGAVFLKVDVDELKEVAEK----YNVEAMPTFLFIKDGAEADKVVG 107
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 31.5 bits (72), Expect = 0.063
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 21/100 (21%)
Query: 131 VLEINGDT-YVQEVNNAGEGIWVVLHF-----IPLCSLINNHLSELAAKFPTTKFIK--- 181
V + D + E++ AG + V+ F P C I S ++ K+P F++
Sbjct: 3 VKPVGSDPDFQPELSGAGSRL-AVVKFTMRGCGP-CLRIAPAFSSMSNKYPQAVFLEVDV 60
Query: 182 ----SISTTC-IPNYPDKNLPTLFIYFEGKMQSQMVGPDE 216
+ T I PT + Q G D
Sbjct: 61 HQCQGTAATNNI-----SATPTFQFFRNKVRIDQYQGADA 95
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 31.5 bits (72), Expect = 0.078
Identities = 17/103 (16%), Positives = 42/103 (40%), Gaps = 19/103 (18%)
Query: 123 AEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF-----IPLCSLINNHLSELAAKFPTT 177
S + + ++ T + + + +V+ F P C ++ HL++L +P
Sbjct: 6 HHHSSYTSITKLTNLTEFRNLIKQND--KLVIDFYATWCGP-CKMMQPHLTKLIQAYPDV 62
Query: 178 KFIK-------SISTTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
+F+K I+ +PT + +G++ +++G
Sbjct: 63 RFVKCDVDESPDIAK----ECEVTAMPTFVLGKDGQLIGKIIG 101
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.12
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 97 DELEDE-EDERVLQEYRRKRIAEMKAMAEKSR 127
D L E E R +E +RKR+ E+ A ++
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVME 109
Score = 26.7 bits (58), Expect = 5.7
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 15/67 (22%)
Query: 59 QKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELEDEEDERVLQEYRRKRIAE 118
++ K + E D E+E + DL+E + E+V K
Sbjct: 93 EQRKRLQELD----------AASKVMEQEWREKAKKDLEEWNQRQSEQV-----EKNKIN 137
Query: 119 MKAMAEK 125
+ +
Sbjct: 138 NRIADKA 144
>2jc9_A Cytosolic purine 5'-nucleotidase; cytosolic 5-prime nucleotidase
II, GMP-IMP specific nucleotidase, CN-II, NT5C2,
hydrolase, polymorphism; HET: ADN; 1.5A {Homo sapiens}
PDB: 2j2c_A* 2xje_A* 2xjf_A* 2jcm_A* 2xcw_A* 2xcv_A*
2xcx_A 2xjb_A* 2xjc_A* 2xjd_A*
Length = 555
Score = 32.1 bits (72), Expect = 0.16
Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 23/124 (18%)
Query: 41 YEEDTQWNDILRAK--------GIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMD 92
Y D + DIL++K +IP+ +E+ + +E Q + L ++
Sbjct: 367 YIGDHIFGDILKSKKRQGWRTFLVIPELAQEL---HVWTDKSSLFEELQSL-DIFLAELY 422
Query: 93 LDDLDELEDEEDERVLQEYRRKRIAEM-----------KAMAEKSRFGRVLEINGDTYVQ 141
+ D +Q +K +M ++ + ++ F + D Y
Sbjct: 423 KHLDSSSNERPDISSIQRRIKKVTHDMDMCYGMMGSLFRSGSRQTLFASQVMRYADLYAA 482
Query: 142 EVNN 145
N
Sbjct: 483 SFIN 486
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 29.6 bits (67), Expect = 0.34
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 20/100 (20%)
Query: 129 GRVLEINGD-TYVQEVNNAGE-GIWVVLHF-----IPLCSLINNHLSELAAKFPTT-KFI 180
G V+ I+ + ++ E +V+ F P C +I L+ + F+
Sbjct: 2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGP-CKMIAPLFETLSNDYAGKVIFL 60
Query: 181 K-------SISTTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
K +++ +PT +Y +G +VG
Sbjct: 61 KVDVDAVAAVAEA----AGITAMPTFHVYKDGVKADDLVG 96
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 29.9 bits (67), Expect = 0.34
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 8/82 (9%)
Query: 140 VQEVNNAGEGIWVVLHFI----PLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDK- 194
V + + +VL F P+C +++ LS+ ++ I + Y
Sbjct: 14 VDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYF 73
Query: 195 ---NLPTLFIYFEGKMQSQMVG 213
+P+ +F G+ G
Sbjct: 74 DISYIPSTVFFFNGQHMKVDYG 95
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 29.8 bits (67), Expect = 0.37
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 14/99 (14%)
Query: 129 GRVLEINGDTYVQEVNNAGEGIWVVLHFI---PLCSLINNHLSELAAKFPTTKF-IKSIS 184
G + N T +E+ W+V F C ++L+ K+ T +
Sbjct: 7 GYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVD 66
Query: 185 TTCIPNYPDK----------NLPTLFIYFEGKMQSQMVG 213
+ + LPTL ++ GK +
Sbjct: 67 VGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQ 105
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 29.2 bits (66), Expect = 0.40
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 19/104 (18%)
Query: 122 MAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHFI-----PLCSLINNHLSELAAKFPT 176
MA V + + + E V++ F P C I E + +
Sbjct: 1 MAHHHHHHMVKIVTSQAEFDSIISQNE--LVIVDFFAEWCGP-CKRIAPFYEECSKTYTK 57
Query: 177 TKFIK-------SISTTCIPNYPDKNLPTLFIYFEGKMQSQMVG 213
FIK ++ ++PT +Y G ++G
Sbjct: 58 MVFIKVDVDEVSEVTEK----ENITSMPTFKVYKNGSSVDTLLG 97
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 30.6 bits (69), Expect = 0.50
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 52 RAKGIIPQKEKEVTEDDIVNLVEQTVKEKQG--KGEKELGDMD--LDDL-DELEDEEDER 106
++ K+ E I +L E EK K EK+ D+ L+ L ELED D
Sbjct: 1108 TSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTT 1167
Query: 107 -VLQEYRRKRIAEMK 120
QE R +
Sbjct: 1168 ATQQELRGSDYKDDD 1182
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 27.7 bits (62), Expect = 1.4
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 20/98 (20%)
Query: 129 GRVLEINGDTYVQEVNNAGEGIWVVLHFI-----PLCSLINNHLSELAAKFPTTKFIK-- 181
++E+ D ++ + + VV+ F P C I EL+ K+ F+K
Sbjct: 13 SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGP-CKTIAPLFKELSEKYDA-IFVKVD 70
Query: 182 -----SISTTC-IPNYPDKNLPTLFIYFEGKMQSQMVG 213
+ I +PT G+ +VG
Sbjct: 71 VDKLEETARKYNI-----SAMPTFIAIKNGEKVGDVVG 103
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 27.7 bits (62), Expect = 1.5
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 160 CSLINNHLSELAAKFPTTKFIK-------SISTTC-IPNYPDKNLPTLFIYFEGKMQSQM 211
C +I + + + ++P F K ++ + +PTL ++ GK +++
Sbjct: 39 CKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEV-----SAMPTLLLFKNGKEVAKV 93
Query: 212 VG 213
VG
Sbjct: 94 VG 95
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 27.2 bits (61), Expect = 1.7
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 20/93 (21%)
Query: 134 INGDTYVQEVNNAGEGIWVVLHFI-----PLCSLINNHLSELAAKFPTTKFIK------- 181
+ +N + +V+ F P C I + LA + P +F K
Sbjct: 5 ATAADLEKLINENKGRL-IVVDFFAQWCGP-CRNIAPKVEALAKEIPEVEFAKVDVDQNE 62
Query: 182 SISTTC-IPNYPDKNLPTLFIYFEGKMQSQMVG 213
+ + +PT +GK + G
Sbjct: 63 EAAAKYSV-----TAMPTFVFIKDGKEVDRFSG 90
>1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide
oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus}
SCOP: e.5.1.1 PDB: 1gwh_A* 1hbz_A* 1gwf_A*
Length = 503
Score = 28.7 bits (65), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 143 VNNAGEGIWVVLHFIPLCSLINNHLSELAAK 173
VN GE WV HFI ++N ++ A K
Sbjct: 208 VNAQGEKHWVKYHFISQQG-VHNLSNDEATK 237
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET:
HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Length = 484
Score = 28.7 bits (65), Expect = 1.8
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 143 VNNAGEGIWVVLHFIPLCSLINNHLSELAAK 173
VN GE +V H+ L I N + A+
Sbjct: 199 VNAKGEVHYVKFHWKSLQG-IKNLDPKEVAQ 228
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 27.2 bits (61), Expect = 1.9
Identities = 7/58 (12%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 160 CSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDK----NLPTLFIYFEGKMQSQMVG 213
C ++ ++ + + + I+ I + + PT+ +++ GK +
Sbjct: 33 CDVMLRKVNYVLENYNYVEKIE-ILLQDMQEIAGRYAVFTGPTVLLFYNGKEILRESR 89
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 28.6 bits (64), Expect = 2.0
Identities = 6/42 (14%), Positives = 11/42 (26%)
Query: 84 GEKELGDMDLDDLDELEDEEDERVLQEYRRKRIAEMKAMAEK 125
L + ++ L DEE + + A
Sbjct: 138 KGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALV 179
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 28.5 bits (64), Expect = 2.0
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 143 VNNAGEGIWVVLHFIPLCSLINNHLSELAAK 173
+N G+ +V H+ PL + + + A K
Sbjct: 280 INAEGKATFVRFHWKPLAG-KASLVWDEAQK 309
>1vcz_A RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.80A {Nicotiana
glutinosa} PDB: 1vd1_A* 1vd3_A*
Length = 217
Score = 28.1 bits (62), Expect = 2.1
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 31 FGAVVNLKPNYEEDTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQ 75
F A ++ + + + L+ I P+ + T + I +E+
Sbjct: 113 FQAALDFRKKS--NL--LENLKNAEITPRNGEHYTLESIKKAIEE 153
>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex,
oxidoreductas; HET: HEM; 1.60A {Helicobacter pylori}
SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A*
Length = 505
Score = 28.3 bits (64), Expect = 2.2
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 143 VNNAGEGIWVVLHFIPLCSLINNHLSELAAK 173
+N GE WV HF + + + +E AA+
Sbjct: 204 INAKGERFWVKFHFHTMQG-VKHLTNEEAAE 233
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 26.9 bits (60), Expect = 2.3
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 160 CSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDK----NLPTLFIYFEGKMQSQMVG 213
C ++ + ELA +P F K +++ P+ + +LPT+ + +G+ +++G
Sbjct: 31 CLILAPIIEELAEDYPQVGFGK-LNSDENPDIAARYGVMSLPTVIFFKDGEPVDEIIG 87
>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A
{Exiguobacterium oxidotolerans}
Length = 491
Score = 28.3 bits (64), Expect = 2.3
Identities = 7/31 (22%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 143 VNNAGEGIWVVLHFIPLCSLINNHLSELAAK 173
VN G +++ L ++P ++N ++ A +
Sbjct: 204 VNAHGNTVYIKLRWVPKEG-VHNLSADEATE 233
>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM
NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A*
1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A*
3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A*
8cat_A*
Length = 497
Score = 28.3 bits (64), Expect = 2.3
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 143 VNNAGEGIWVVLHFIPLCSLINNHLSELAAK 173
VN GE ++ H+ I N E AA+
Sbjct: 219 VNANGEAVYCKFHYKTDQG-IKNLSVEDAAR 248
>3fip_A Outer membrane usher protein PAPC; beta barrel, protein
translocase, cell membrane, cell outer fimbrium,
transmembrane, transport; 3.15A {Escherichia coli} PDB:
2vqi_A*
Length = 493
Score = 28.3 bits (63), Expect = 2.5
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 1 MSISGTDTKKEERLIKSARNQILSLNLSVPFG 32
+ +S + +K R N L +SVP G
Sbjct: 379 VGLSASRSKYLGR-----DNDSAYLRISVPLG 405
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Length = 399
Score = 28.1 bits (63), Expect = 2.7
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 14/60 (23%)
Query: 84 GEKELGDMDLDDLDELEDEEDERVLQEYRRKR---------IAEMKAMAEK--SRFGRVL 132
G++ L ++ L++L+ D + +RR R A+ FGR++
Sbjct: 258 GKESLREVQLEELEAARDLVSKEG---FRRARHVVGEIRRTAQAAAALRRGDYRAFGRLM 314
>1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A
{Saccharomyces cerevisiae} SCOP: e.5.1.1
Length = 488
Score = 27.9 bits (63), Expect = 2.7
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 143 VNNAGEGIWVVLHFIPLCSLINNHLSELAAK 173
N G+ +V +H I N E A K
Sbjct: 206 SNKNGDWHYVQVHIKTDQG-IKNLTIEEATK 235
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET:
HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Length = 715
Score = 27.8 bits (62), Expect = 3.3
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 143 VNNAGEGIWVVLHFIPLCSLINNHLSELAAK 173
+N G+ +V H+ P +++ + + A K
Sbjct: 223 INAQGKRHFVKFHWTPELG-VHSLVWDEALK 252
>1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel, wrapping
region, terminal helical region, tetramer, heme group,
oxidoreducta; HET: HEM; 2.30A {Enterococcus faecalis}
SCOP: e.5.1.1
Length = 484
Score = 27.9 bits (63), Expect = 3.4
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 143 VNNAGEGIWVVLHFIP---LCSLINNHLSELAAK 173
VN AGE +V HF + +L + E+A K
Sbjct: 202 VNAAGEVFFVKYHFKTNQGIKNLESQLAEEIAGK 235
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 27.3 bits (61), Expect = 3.9
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 84 GEKELGDMDLDDLDELEDEEDER---VLQEYRRKRIAEMKAMAEK--SRFGRVL 132
G+ ++ +L +L + +++E R A+ E G++L
Sbjct: 213 GKGSSKEVREGELSKLPPLHRKFFGYIVRENARVLEV-RDALKEGNVEEVGKIL 265
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 27.4 bits (61), Expect = 4.0
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 7/30 (23%)
Query: 114 KRIAEMKAMAEKS-------RFGRVLEING 136
KRI EM M + RF V +G
Sbjct: 179 KRIMEMFLMRKSEEIAISTARFANVAFSDG 208
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase,
peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Length = 688
Score = 27.7 bits (62), Expect = 4.1
Identities = 6/31 (19%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 143 VNNAGEGIWVVLHFIPLCSLINNHLSELAAK 173
V G+ V H+ + E A
Sbjct: 223 VTEDGKSKLVKWHWKTKQG-KAALVWEEAQV 252
>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, hydrogen
peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida} PDB:
1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A*
1h6n_A* 3hb6_A*
Length = 483
Score = 27.5 bits (62), Expect = 4.4
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 143 VNNAGEGIWVVLHFIPLCSLINNHLSELAAK 173
+N+ E WV HF+ I N A +
Sbjct: 201 INSDNERYWVKFHFVSQQG-IKNLSDAEAGE 230
>2xq1_A Peroxisomal catalase; oxidoreductase, hydrogen peroxide
detoxification, PTS1; HET: HEM; 2.90A {Pichia angusta}
Length = 509
Score = 27.2 bits (61), Expect = 5.5
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 143 VNNAGEGIWVVLHFIPLCSLINNHLSELAAK 173
N+ GE ++V +HFI ++N L E A +
Sbjct: 215 YNSKGEWVYVQVHFIANQG-VHNLLDEEAGR 244
>1urj_A Major DNA-binding protein; SSB, ICP8, HSV-1, DNA replication,
zinc-finger, nuclear protein.; 3.0A {Human herpesvirus
1} SCOP: e.58.1.1
Length = 1136
Score = 27.0 bits (59), Expect = 6.0
Identities = 10/82 (12%), Positives = 18/82 (21%), Gaps = 7/82 (8%)
Query: 142 EVNNAGEGIWVVLHFIPLCSLINNHLSELAAKFPTTKFIKSISTTCIPNYPDKNLPTLFI 201
+ EG F P+ + F + K + +
Sbjct: 693 FAGQSVEGRNFRNQFQPVLR--RRVMDMFNNGFLSAKTLTVALSEGAAICAPSLTAGQTA 750
Query: 202 YFEGKMQS-----QMVGPDEFR 218
E + + P E R
Sbjct: 751 PAESSFEGDVARVTLGFPKELR 772
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Length = 419
Score = 26.6 bits (59), Expect = 7.5
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 13/64 (20%)
Query: 80 KQGKGEKELGDMDLDDLDELEDEEDERVLQEYRR--------KRIAEM-KAMAEK--SRF 128
+ + LG++ ++ D D + L +R R KA ++F
Sbjct: 268 QTRLDIQSLGELSNEEFDANTDLIGDETL--IKRARHAVYENNRTKIAQKAFVAGNLTKF 325
Query: 129 GRVL 132
G +L
Sbjct: 326 GELL 329
>3jud_A AIG2-like domain-containing protein 1; cyclotransferase,
gamma-glutamylamine cyclotransferase,
gamma-glutamyl-epsilon-lysine; 0.98A {Homo sapiens} PDB:
3jub_A 3juc_A
Length = 153
Score = 25.8 bits (56), Expect = 8.3
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 5/30 (16%)
Query: 87 ELGDMDLDDLDELEDEEDERVLQEYRRKRI 116
+ + L LD+ + Y+R +
Sbjct: 69 AVDERMLRFLDDFQSCPA-----LYQRTVL 93
>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A
{Trichoplusia NI} SCOP: a.25.1.1
Length = 212
Score = 26.2 bits (57), Expect = 8.4
Identities = 13/104 (12%), Positives = 26/104 (25%), Gaps = 21/104 (20%)
Query: 20 NQILSLNLSVPFGAVVNLKPNYEEDTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVK- 78
+ + F +K + T N L A +KE+ E + + +
Sbjct: 92 KHVTKRGDKMNFDQHSTMKTERKNYTAENHELEALAKALDTQKELAE-RAFYIHREATRN 150
Query: 79 ------------------EKQGKGEKELGDMDLDDLDELEDEED 104
E + + L DL + +
Sbjct: 151 SQHLHDPEIAQYLEEEFIEDHAEKIRTLAGH-TSDLKKFITANN 193
>3e4w_A Putative uncharacterized protein; heme enzyme, catalase,
peroxidase, oxidoreductase; HET: HEM; 1.80A
{Mycobacterium avium subsp} PDB: 3e4y_A*
Length = 320
Score = 26.4 bits (59), Expect = 9.4
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 143 VNNAGEGIWVVLHFIPLCSLINNHLSELAAKFP 175
+ G +V H +P + S+ K P
Sbjct: 178 IAADGSARFVRYHLVPTAAEEYLSASDARGKDP 210
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.134 0.378
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,464,336
Number of extensions: 208400
Number of successful extensions: 742
Number of sequences better than 10.0: 1
Number of HSP's gapped: 700
Number of HSP's successfully gapped: 106
Length of query: 228
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 138
Effective length of database: 4,188,903
Effective search space: 578068614
Effective search space used: 578068614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (24.9 bits)