RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14385
(228 letters)
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 95.9 bits (238), Expect = 4e-25
Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 11/181 (6%)
Query: 48 NDILRAKGIIPQKEKEVTE-DDIVNLVEQTVKEKQGKGEKELGDMDLDDLDEL--EDEED 104
ND + K + +I+ + ++ + EL +D+ED
Sbjct: 14 NDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELIHQDKED 73
Query: 105 ERVLQEYRRKRIAEM-KAMAEKSRFGRVLEI-NGDTYVQEVNNAGEGIWVVLHF----IP 158
E L++YRR+ + +M + ++ R+G V E+ G+ +++ + + +V++ +
Sbjct: 74 EGCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVR 133
Query: 159 LCSLINNHLSELAAKFPTTKFIK--SISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDE 216
C +N+ L LAA++P KF K + +T + LPTL +Y G++ S + E
Sbjct: 134 GCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFISVAE 193
Query: 217 F 217
Sbjct: 194 Q 194
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin F [TaxId: 3562]}
Length = 112
Score = 41.3 bits (96), Expect = 1e-05
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 119 MKAMAEKSRFGRVLEINGDTYVQEVNNAGEGIWVVLHFIPLCS---LINNHLSELAAKFP 175
M+A+ G+V E+N DT+ V AG+ V+ F C + +LA ++
Sbjct: 1 MEAIV-----GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL 55
Query: 176 TTKFIKSISTTCIPN----YPDKNLPTLFIYFEGKMQSQMVGPDE 216
F+K + +PT I E + ++ G
Sbjct: 56 DVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKY 100
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId:
1167]}
Length = 108
Score = 30.6 bits (68), Expect = 0.058
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Query: 131 VLEINGDTYVQEVNNAGEGIWVVLHFIPLCS---LINNHLSELAAKFPTTKFIKSISTTC 187
V+ I + EV A E +V + C L++ ++ A + + +
Sbjct: 4 VITITDAEFESEVLKA-EQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP 62
Query: 188 IPN----YPDKNLPTLFIYFEGKMQSQMVGP 214
P Y + +P L + ++ G
Sbjct: 63 NPTTVKKYKVEGVPALRLVKGEQILDSTEGV 93
>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 112
Score = 30.2 bits (67), Expect = 0.077
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 10/98 (10%)
Query: 129 GRVLEINGD-TYVQEVNNAG-EGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKS 182
G V+ I+ + ++ E +V+ F C +I L+ +
Sbjct: 2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLK 61
Query: 183 ISTTCIPNYPDKN----LPTLFIYFEGKMQSQMVGPDE 216
+ + + +PT +Y +G +VG +
Sbjct: 62 VDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQ 99
>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId:
5691]}
Length = 113
Score = 29.8 bits (66), Expect = 0.097
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 9/99 (9%)
Query: 125 KSRFGRVLEINGDTYVQEVNNAGEGIWVVLHF-------IPLCSLINNHLSELAAKFPTT 177
++R+ V+++ + + + E I V F ++
Sbjct: 4 RARYPSVVDVYSVEQFRNIMS--EDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFA 61
Query: 178 KFIKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDE 216
K ++ + LPT I GKM ++G +
Sbjct: 62 KVDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANP 100
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 29.5 bits (66), Expect = 0.20
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 58 PQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDD-LDELEDEE------DE--RVL 108
PQ++K++ + + L++ GK L ++D + L LE E DE VL
Sbjct: 63 PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 122
Query: 109 QEYRRKRIAEMKA 121
Q ++ K A+
Sbjct: 123 QAHQAKEAAQKAV 135
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus
tremula), thioredoxin H [TaxId: 113636]}
Length = 113
Score = 27.8 bits (61), Expect = 0.50
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 129 GRVLEING-DTYVQEVNNA-GEGIWVVLHF-------IPLCSLINNHLSELAAKFPTTKF 179
G+V+ + DT+ + G +V+ F + + I L++ K
Sbjct: 4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKV 63
Query: 180 IKSISTTCIPNYPDKNLPTLFIYFEGKMQSQMVGPDE 216
+ + +PT +GK+ + VG D+
Sbjct: 64 DVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADK 100
>d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage
looper(Trichoplusia ni), L chain [TaxId: 7111]}
Length = 200
Score = 28.4 bits (63), Expect = 0.62
Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 29 VPFGAVVNLKPNYEEDTQWNDILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKEL 88
+ F +K + T N L A +KE+ E + + + Q + E+
Sbjct: 89 MNFDQHSTMKTERKNYTAENHELEALAKALDTQKELAE-RAFYIHREATRNSQHLHDPEI 147
Query: 89 GDMDLDD-LDELEDEEDE 105
++ +++ ++
Sbjct: 148 AQYLEEEFIEDHAEKIRT 165
>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 27.0 bits (59), Expect = 0.79
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 131 VLEINGDTYVQEVNNAGEGIWVVLHF----IPLCSLINNHLSELAAKFPTTKFIKSISTT 186
V +I T QE +A VV+ F C +I L+ K+ F++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 187 C---IPNYPDKNLPTLFIYFEGKMQSQMVGPDE 216
C K +PT + +G+ + G ++
Sbjct: 62 CQDVASECEVKCMPTFQFFKKGQKVGEFSGANK 94
>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 27.0 bits (59), Expect = 0.83
Identities = 11/86 (12%), Positives = 20/86 (23%), Gaps = 6/86 (6%)
Query: 137 DTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKFPTTKFIKSISTTCIPN------ 190
+ E++ AG + VV + C ++ +
Sbjct: 10 PDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAAT 69
Query: 191 YPDKNLPTLFIYFEGKMQSQMVGPDE 216
PT + Q G D
Sbjct: 70 NNISATPTFQFFRNKVRIDQYQGADA 95
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius,
formerly Bacillus acidocaldarius [TaxId: 405212]}
Length = 105
Score = 26.7 bits (58), Expect = 1.2
Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 131 VLEINGDTYVQEVNNAGEGIWVVLHFIPLCS---LINNHLSELAAKFPTTKFIKSISTTC 187
+ + + Q + G+ +V + C ++ L E A + ++
Sbjct: 2 TMTLTDANFQQAIQ--GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE 59
Query: 188 IPNYPDK----NLPTLFIYFEGKMQSQMVGP 214
P + ++PTL ++ G+ Q++G
Sbjct: 60 NPETTSQFGIMSIPTLILFKGGEPVKQLIGY 90
>d1sgla_ d.124.1.1 (A:) Trichomaglin {Gourd (Trichosanthes
lepiniana) [TaxId: 282652]}
Length = 206
Score = 26.6 bits (58), Expect = 2.1
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 49 DILRAKGIIPQKEKEVTEDDIVNLVEQ 75
L GI+ K DIV VE
Sbjct: 131 KALEDAGIVASNSKMYDLKDIVVAVES 157
>d1xhsa_ d.269.1.1 (A:) Hypothetical protein YtfP {Escherichia coli
[TaxId: 562]}
Length = 113
Score = 25.7 bits (56), Expect = 2.8
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 5/30 (16%)
Query: 87 ELGDMDLDDLDELEDEEDERVLQEYRRKRI 116
+ + L +LD L EY R+ I
Sbjct: 57 RIDNATLAELDALRTRGG-----EYARQLI 81
>d1jy5a_ d.124.1.1 (A:) RNase-related protein {Hedge bindweed
(Calystegia sepium) [TaxId: 47519]}
Length = 207
Score = 25.9 bits (56), Expect = 3.3
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 49 DILRAKGIIPQKEKEVTEDDIVNLVEQTVK 78
+IL G +P E + I++ ++ ++
Sbjct: 133 EILSESGYLPSNTAEYKVEGIMSAIQSALR 162
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 26.3 bits (56), Expect = 3.5
Identities = 8/77 (10%), Positives = 27/77 (35%), Gaps = 27/77 (35%)
Query: 50 ILRAKGIIPQKEKEVTEDDIVNLVEQTVKEKQGKGEKELGDMDLDDLDELEDEEDERVLQ 109
I I + + V +++ L+ + + ++ +++
Sbjct: 403 ICNEWEIGMEIDTNVKREELAKLINEV----------------------IAGDKGKKM-- 438
Query: 110 EYRRKRIAEMKAMAEKS 126
+++ E+K AE++
Sbjct: 439 ---KQKAMELKKKAEEN 452
>d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 26.4 bits (58), Expect = 3.8
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 130 RVLEINGDTYVQEVNNAGEGIWVVLHFIPLC---SLINNHLSELAAKFP 175
R + G + VN GE ++ H+ +L + L+ + P
Sbjct: 206 RHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNLSVEDAARLSQEDP 254
>d3d3ra1 b.40.14.1 (A:1-76) Hydrogenase expression/formation protein
HypC {Shewanella oneidensis [TaxId: 70863]}
Length = 76
Score = 24.7 bits (54), Expect = 4.0
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 129 GRVLEINGDTYVQEVNNAGEGIWVVLHFIP 158
+V+ ++ + V+ G V H +
Sbjct: 7 SQVVAVDNERQSVTVDTLGVRRDVSSHLMT 36
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 471
Score = 25.9 bits (55), Expect = 4.5
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 99 LEDEEDERVLQEYRRKRIAEMKAMAEKS 126
+E EE + V R ++ E+K A +
Sbjct: 422 MEGEEGKGV-----RNKMKELKEAACRV 444
>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 103
Score = 24.4 bits (52), Expect = 6.7
Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 7/92 (7%)
Query: 131 VLEINGDTYVQEVNNAGEGIWVVLHFIPLCSLINNHLSELAAKFPTTKFIKSISTTCIPN 190
V + + + E + +V F C T + I
Sbjct: 2 VKIVTSQAEFDSIISQNE-LVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEV 60
Query: 191 ------YPDKNLPTLFIYFEGKMQSQMVGPDE 216
++PT +Y G ++G ++
Sbjct: 61 SEVTEKENITSMPTFKVYKNGSSVDTLLGAND 92
>d1rsob_ a.194.1.1 (B:) Peripheral plasma membrane protein cask {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 56
Score = 23.2 bits (50), Expect = 7.5
Identities = 7/42 (16%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 93 LDDLDELEDEEDERVLQEYRRKRIAEMKAMAEKSRFGRVLEI 134
LD L+E+ L + K + + ++ + +L++
Sbjct: 13 LDSLEEIH------ALTDSSEKDLDFLHSVFQDQHLHTLLDL 48
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli
[TaxId: 562]}
Length = 69
Score = 23.5 bits (51), Expect = 7.7
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 73 VEQTVKEKQGKGEKELGDMDLDDLDELEDEEDERV--LQE 110
K+ +GK +++ G + DD+ +E + D+ V +QE
Sbjct: 6 AGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQE 45
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding
protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 23.7 bits (51), Expect = 8.6
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 39 PNYEEDTQWNDILRAKGIIPQ 59
P + W DI++ G +P+
Sbjct: 49 PEFAVAPDWTDIVKQSGFVPE 69
>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]}
Length = 484
Score = 25.3 bits (55), Expect = 8.6
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 130 RVLEINGDTYVQEVNNAGEGIWVVLHFIPLC---SLINNHLSELAAKFP 175
R ++ NG + VN GE +V H+ L +L ++++ +K
Sbjct: 186 RFMDGNGVHAYKLVNAKGEVHYVKFHWKSLQGIKNLDPKEVAQVQSKDY 234
>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 114
Score = 24.0 bits (51), Expect = 9.8
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 11/104 (10%)
Query: 122 MAEKSRFGRVLEI-NGDTYVQEVNNAGE-GIWVVLHF-IPLCSLINNHLSELAAKFPTTK 178
MA S G+V+ +T+ +++ A E VV+ F C A
Sbjct: 1 MA--SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP 58
Query: 179 FIKSISTTCIPNYPDKN------LPTLFIYFEGKMQSQMVGPDE 216
+ + + +PT EGK+ ++VG +
Sbjct: 59 NVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKK 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.134 0.378
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 838,602
Number of extensions: 39527
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 35
Length of query: 228
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,281,736
Effective search space: 187133456
Effective search space used: 187133456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.5 bits)