BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14386
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 97/180 (53%), Gaps = 14/180 (7%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPY 224
+KP+ C +C K F L EH+ HTG Y+C CGK F +K L HQR H+ +KPY
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPY 78
Query: 225 ACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPC 284
C C +SF + L H+ H G KPY+C CG+ F ++HQ+ H+G + Y C
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG--EKPYKC 136
Query: 285 PVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
P CG+SF++ + H+R HTGE+PY C C K+F R L VH++ H
Sbjct: 137 PE------------CGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 91/179 (50%), Gaps = 14/179 (7%)
Query: 142 CDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNAC 201
C C K FS H H +KP++C +C K F K L H+ HTG Y+C C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 202 GKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGF 261
GK F ++ L HQR H+ +KPYAC C +SF L H+ H G KPY C CG+ F
Sbjct: 84 GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSF 143
Query: 262 ITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGER 320
+ +HQ+ H+G + Y CP CG+SF++ + +H+R HTG++
Sbjct: 144 SREDNLHTHQRTHTG--EKPYKCPE------------CGKSFSRRDALNVHQRTHTGKK 188
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 70/137 (51%)
Query: 140 HKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECN 199
+KC C K FS H H +KP++C +C K F + L H+ HTG Y C
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109
Query: 200 ACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGR 259
CGK F ++L HQR H+ +KPY C C +SF + L H+ H G KPY C CG+
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK 169
Query: 260 GFITKGLCKSHQKIHSG 276
F + HQ+ H+G
Sbjct: 170 SFSRRDALNVHQRTHTG 186
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 40/79 (50%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
Y+C CGK F S L HQR H+ +KPY C C +SF L H+ H G KPY C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 256 ICGRGFITKGLCKSHQKIH 274
CG+ F HQ+ H
Sbjct: 65 ECGKSFSRSDHLSRHQRTH 83
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%)
Query: 164 VDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKP 223
++KP++C +C K F L +H+ HTG Y+C CGK F S L HQR H+ +KP
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 224 YACKTCPRSFKTKQTLLDHENRHMGVK 250
Y C C +SF L H+ H K
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPM 309
KPY C CG+ F + HQ+ H+G + Y CP C G+SF+Q S +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGE--KPYKCPEC------------GKSFSQSSDL 48
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
H+R HTGE+PY C C K+F L H++ H
Sbjct: 49 QKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%)
Query: 140 HKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECN 199
+KC C K FS + H H +KP++C +C K F L +H+ HTG Y+C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 200 ACGKGFQNKSYLIVHQRVHSTDK 222
CGK F +L HQR H K
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQNKK 87
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 14/100 (14%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNR 280
+KPY C C +SF L H+ H G KPY C CG+ F + HQ+ H+G +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTG--EK 59
Query: 281 QYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGER 320
Y CP CG+SF++ ++ H+R H ++
Sbjct: 60 PYKCPE------------CGKSFSRSDHLSRHQRTHQNKK 87
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C K+F S L H++ H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTH 27
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 145 CPKKFSSLAKYNFHVSNHGVDKPFQC-FK-CEKRFRSKLGLDEHEAKHTGRYEYECNACG 202
C K++ L+ H H +KP+QC FK CE+RF L H+ +HTG ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 203 KGFQNKSYLIVHQRVHSTDKPYACK--TCPRSFKTKQTLLDHENRH 246
+ F +L H R H+ +KP++C+ +C + F L+ H N H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 200 ACGKGFQNKSYLIVHQRVHSTDKPYAC--KTCPRSFKTKQTLLDHENRHMGVKPYSCEIC 257
C K + S+L +H R H+ +KPY C K C R F L H+ RH GVKP+ C+ C
Sbjct: 13 GCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC 72
Query: 258 GRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFV 292
R F K+H + H+G P C+K F
Sbjct: 73 QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 166 KPFQCF--KCEKRFRSKLGLDEHEAKHTGRYEYECNA--CGKGFQNKSYLIVHQRVHSTD 221
+PF C C KR+ L H KHTG Y+C+ C + F L HQR H+
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEI--CGRGFITKGLCKSHQKIH 274
KP+ CKTC R F L H H G KP+SC C + F H +H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 250 KPYSCEI--CGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFS 307
+P+ C C + + + H + H+G + Y C C + F++
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGE--KPYQCDF----------KDCERRFSRSD 52
Query: 308 PMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ H+R HTG +P+ C+ C + F L H + H
Sbjct: 53 QLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 14/93 (15%)
Query: 252 YSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAI 311
+ C+ICG+ F +H IHS D R YPC CG+ F Q S M
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHS--DTRPYPC------------QYCGKRFHQKSDMKK 47
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
H +HTGE+P+ C++C KAF S L+ H +KH
Sbjct: 48 HTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 195 EYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
++C CGK F+ S L H +HS +PY C+ C + F K + H H G KP+ C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 255 EICGRGFITKGLCKSHQKIHSG 276
++CG+ F +H + H+G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 168 FQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACK 227
F C C K F+ L H H+ Y C CGK F KS + H +H+ +KP+ C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 228 TCPRSFKTKQTLLDHENRHMG 248
C ++F L+ H +H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%)
Query: 142 CDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNAC 201
C C K F + + H+ H +P+ C C KRF K + +H HTG ++C C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 202 GKGFQNKSYLIVHQRVHS 219
GK F S LI H R H+
Sbjct: 64 GKAFSQSSNLITHSRKHT 81
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 142 CDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
C C K+F + H H +KP +C C K F L H KHTG
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 169 QCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQR---VHSTDKPYA 225
+C C K+F SK L H KHTG +EC CGK + K L+ H+ ++ +++ +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 226 CKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQ-KIHSG 276
C C +F+ + L H H G PY C C + F+ K +SH K+HSG
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 141 KCDRCPKKFSSLAKYNFHVSN--HGVDKPFQCFKCEKRFRSKLGLDEHEAKH-TGRYE-- 195
+C C KKF L+KY V N H +KPF+C KC K + K L EHEA++ R E
Sbjct: 9 ECPTCHKKF--LSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDH 242
+ C+ C + F+ + L +H H+ + PY C +C + F K+ L H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 226 CKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCP 285
C TC + F +K L H +H G KP+ C CG+ + K H+ + N + Q
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ---- 65
Query: 286 VCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVH 340
+F +C++C ++F + + +H HTGE PY C C++ F+ + L H
Sbjct: 66 ----VF---TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENR---HM 247
+G EC C K F +K YL VH R H+ +KP+ C C + + K+ LL+HE R +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 248 GVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSK 294
+ ++C +C F + + H H+G Y C C + F+ K
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTG--EMPYKCSSCSQQFMQK 107
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Query: 284 CPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKK 343
CP C K F+SK + +H R HTGE+P+ C C K + + L+ H+ +
Sbjct: 10 CPTCHKKFLSKY------------YLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEAR 57
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 196 YEC--NACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
Y C +C + F K+ L H R+H+ KP+ C+ C R+F + +L H H G KP++
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 254 CEICGRGFITKGLCKSHQKIH 274
C+ICGR F T H KIH
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 164 VDKPFQC--FKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
+++P+ C C++RF K LD H HTG+ ++C C + F ++ L H R H+ +
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVK 250
KP+AC C R F T T H H+ K
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 16/97 (16%)
Query: 250 KPYSC--EICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFS 307
+PY+C E C R F K +H +IH+G Q C IC ++F+Q +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQ--------------CRICMRNFSQQA 48
Query: 308 PMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ H R HTGE+P++C++C + F + T H K H
Sbjct: 49 SLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 16/102 (15%)
Query: 221 DKPYAC--KTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGND 278
++PYAC ++C R F K L H H G KP+ C IC R F + +H + H+G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTG-- 59
Query: 279 NRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGER 320
+K F +C+ICG+ F H ++H ++
Sbjct: 60 ---------EKPF---ACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%)
Query: 145 CPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKG 204
C ++FS + H+ H KPFQC C + F + L+ H HTG + C+ CG+
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 205 FQNKSYLIVHQRVHSTDK 222
F H ++H K
Sbjct: 72 FATLHTRTRHTKIHLRQK 89
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 141 KCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRF 177
+C C + FS A N H+ H +KPF C C ++F
Sbjct: 36 QCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKF 72
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 195 EYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
E+ C CG+ F L++H+R H+ ++PY C C ++F+ + L DH H KP+ C
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 255 EICGRGFITKGLCKSHQKIH 274
+ CG+GF H+ +H
Sbjct: 77 QECGKGFCQSRTLAVHKTLH 96
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 166 KPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYA 225
K F C C + F L HE HT Y C+ C K F+ + +L H+ +HS +KP+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 226 CKTCPRSFKTKQTLLDHENRHM 247
C+ C + F +TL H+ HM
Sbjct: 76 CQECGKGFCQSRTLAVHKTLHM 97
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 220 TDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDN 279
T K + CK C R F LL HE H +PY+C+IC + F + + H+ IHS
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK--- 70
Query: 280 RQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLH 316
+K F C CG+ F Q +A+HK LH
Sbjct: 71 --------EKPF---KCQECGKGFCQSRTLAVHKTLH 96
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 288 KKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
KK F+ C CG+ FT+ + IH+R HT ERPY+C++C+KAF + L H+ H
Sbjct: 15 KKEFI---CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPM 309
K + C+ CGR F H++ H+ D R Y +C+IC ++F + +
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHT--DERPY------------TCDICHKAFRRQDHL 61
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
H+ +H+ E+P+ C+ C K F TL VHK H
Sbjct: 62 RDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 142 CDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNAC 201
C C + F+ H H ++P+ C C K FR + L +H H+ ++C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 202 GKGFQNKSYLIVHQRVH-STDKPYA 225
GKGF L VH+ +H T P A
Sbjct: 80 GKGFCQSRTLAVHKTLHMQTSSPTA 104
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 196 YEC--NACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
Y C +C + F + S L H R+H+ KP+ C+ C R+F L H H G KP++
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 254 CEICGRGFITKGLCKSHQKIH 274
C+ICGR F K H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 164 VDKPFQC--FKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
+++P+ C C++RF L H HTG+ ++C C + F +L H R H+ +
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVK 250
KP+AC C R F H H+ K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 250 KPYSC--EICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFS 307
+PY+C E C R F H +IH+G Q C IC ++F++
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQ--------------CRICMRNFSRSD 48
Query: 308 PMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ H R HTGE+P++C++C + F H K H
Sbjct: 49 HLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 221 DKPYAC--KTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGND 278
++PYAC ++C R F L H H G KP+ C IC R F +H + H+G
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 59
Query: 279 NRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGER 320
+K F +C+ICG+ F + H ++H ++
Sbjct: 60 ---------EKPF---ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%)
Query: 145 CPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKG 204
C ++FS + H+ H KPFQC C + F L H HTG + C+ CG+
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 205 FQNKSYLIVHQRVHSTDK 222
F H ++H K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 196 YEC--NACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
Y C +C + F K+ L H R+H+ KP+ C+ C R+F L H H G KP++
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 254 CEICGRGFITKGLCKSHQKIH 274
C+ICGR F T H KIH
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 164 VDKPFQC--FKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
+++P+ C C++RF K LD H HTG+ ++C C + F + L H R H+ +
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVK 250
KP+AC C R F T T H H+ K
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 16/97 (16%)
Query: 250 KPYSC--EICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFS 307
+PY+C E C R F K +H +IH+G Q C IC ++F+Q +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQ--------------CRICMRNFSQHT 48
Query: 308 PMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ H R HTGE+P++C++C + F + T H K H
Sbjct: 49 GLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 145 CPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKG 204
C ++FS + H+ H KPFQC C + F GL++H HTG + C+ CG+
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 205 FQNKSYLIVHQRVHSTDK 222
F H ++H K
Sbjct: 72 FATLHTRDRHTKIHLRQK 89
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 16/102 (15%)
Query: 221 DKPYAC--KTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGND 278
++PYAC ++C R F K L H H G KP+ C IC R F H + H+G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG-- 59
Query: 279 NRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGER 320
+K F +C+ICG+ F H ++H ++
Sbjct: 60 ---------EKPF---ACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 141 KCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKH 190
+C C + FS N H+ H +KPF C C ++F + D H H
Sbjct: 36 QCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 196 YEC--NACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
Y C +C + F + L H R+H+ KP+ C+ C R+F L H H G KP++
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 254 CEICGRGFITKGLCKSHQKIH 274
C+ICGR F K H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 164 VDKPFQC--FKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
+++P+ C C++RF L H HTG+ ++C C + F +L H R H+ +
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVK 250
KP+AC C R F H H+ K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 250 KPYSC--EICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFS 307
+PY+C E C R F H +IH+G Q C IC ++F++
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQ--------------CRICMRNFSRSD 48
Query: 308 PMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ H R HTGE+P++C++C + F H K H
Sbjct: 49 HLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 221 DKPYAC--KTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGND 278
++PYAC ++C R F L H H G KP+ C IC R F +H + H+G
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 59
Query: 279 NRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLH 316
+K F +C+ICG+ F + H ++H
Sbjct: 60 ---------EKPF---ACDICGRKFARSDERKRHTKIH 85
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%)
Query: 145 CPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKG 204
C ++FS A+ H+ H KPFQC C + F L H HTG + C+ CG+
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 205 FQNKSYLIVHQRVHSTDK 222
F H ++H K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 196 YEC--NACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
Y C +C + F + L H R+H+ KP+ C+ C R+F L H H G KP++
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 254 CEICGRGFITKGLCKSHQKIH 274
C+ICGR F K H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 164 VDKPFQC--FKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
+++P+ C C++RF L H HTG+ ++C C + F +L H R H+ +
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVK 250
KP+AC C R F H H+ K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 250 KPYSC--EICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFS 307
+PY+C E C R F H +IH+G Q C IC ++F++
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQ--------------CRICMRNFSRSD 48
Query: 308 PMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ H R HTGE+P++C++C + F H K H
Sbjct: 49 HLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 221 DKPYAC--KTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGND 278
++PYAC ++C R F L H H G KP+ C IC R F +H + H+G
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 59
Query: 279 NRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLH 316
+K F +C+ICG+ F + H ++H
Sbjct: 60 ---------EKPF---ACDICGRKFARSDERKRHTKIH 85
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%)
Query: 145 CPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKG 204
C ++FS A H+ H KPFQC C + F L H HTG + C+ CG+
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 205 FQNKSYLIVHQRVHSTDK 222
F H ++H K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 196 YEC--NACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
Y C +C + F L H R+H+ KP+ C+ C R+F L H H G KP++
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 254 CEICGRGFITKGLCKSHQKIH 274
C+ICGR F K H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 164 VDKPFQC--FKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
+++P+ C C++RF L H HTG+ ++C C + F +L H R H+ +
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVK 250
KP+AC C R F H H+ K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 250 KPYSC--EICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFS 307
+PY+C E C R F H +IH+G Q C IC ++F++
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ--------------CRICMRNFSRSD 48
Query: 308 PMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ H R HTGE+P++C++C + F H K H
Sbjct: 49 HLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 221 DKPYAC--KTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGND 278
++PYAC ++C R F L H H G KP+ C IC R F +H + H+G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 59
Query: 279 NRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLH 316
+K F +C+ICG+ F + H ++H
Sbjct: 60 ---------EKPF---ACDICGRKFARSDERKRHTKIH 85
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%)
Query: 145 CPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKG 204
C ++FS + H+ H KPFQC C + F L H HTG + C+ CG+
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 205 FQNKSYLIVHQRVHSTDK 222
F H ++H K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 196 YEC--NACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
Y C +C + F L H R+H+ KP+ C+ C R+F L H H G KP++
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 254 CEICGRGFITKGLCKSHQKIH 274
C+ICGR F K H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 164 VDKPFQC--FKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
+++P+ C C++RF L H HTG+ ++C C + F +L H R H+ +
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVK 250
KP+AC C R F H H+ K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 250 KPYSC--EICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFS 307
+PY+C E C R F G H +IH+G Q C IC ++F++
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQ--------------CRICMRNFSRSD 48
Query: 308 PMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ H R HTGE+P++C++C + F H K H
Sbjct: 49 HLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Query: 221 DKPYAC--KTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGND 278
++PYAC ++C R F +L H H G KP+ C IC R F +H + H+G
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 59
Query: 279 NRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLH 316
+K F +C+ICG+ F + H ++H
Sbjct: 60 ---------EKPF---ACDICGRKFARSDERKRHTKIH 85
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%)
Query: 145 CPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKG 204
C ++FS H+ H KPFQC C + F L H HTG + C+ CG+
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 205 FQNKSYLIVHQRVHSTDK 222
F H ++H K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 196 YEC--NACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
Y C +C + F L H R+H+ KP+ C+ C R+F L H H G KP++
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 254 CEICGRGFITKGLCKSHQKIH 274
C+ICGR F K H KIH
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 165 DKPFQC--FKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDK 222
++P+ C C++RF L H HTG+ ++C C + F +L H R H+ +K
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 223 PYACKTCPRSFKTKQTLLDHENRHM 247
P+AC C R F H H+
Sbjct: 61 PFACDICGRKFARSDERKRHTKIHL 85
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 250 KPYSC--EICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFS 307
+PY+C E C R F H +IH+G Q C IC ++F++
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ--------------CRICMRNFSRSD 47
Query: 308 PMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ H R HTGE+P++C++C + F H K H
Sbjct: 48 HLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 221 DKPYAC--KTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGND 278
++PYAC ++C R F L H H G KP+ C IC R F +H + H+G
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 58
Query: 279 NRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLH 316
+K F +C+ICG+ F + H ++H
Sbjct: 59 ---------EKPF---ACDICGRKFARSDERKRHTKIH 84
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%)
Query: 145 CPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKG 204
C ++FS + H+ H KPFQC C + F L H HTG + C+ CG+
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 205 FQNKSYLIVHQRVH 218
F H ++H
Sbjct: 71 FARSDERKRHTKIH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 196 YEC--NACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
Y C +C + F L H R+H+ KP+ C+ C R+F L H H G KP++
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 254 CEICGRGFITKGLCKSHQKIH 274
C+ICGR F K H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 165 DKPFQC--FKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDK 222
++P+ C C++RF L H HTG+ ++C C + F +L H R H+ +K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 223 PYACKTCPRSFKTKQTLLDHENRHM 247
P+AC C R F H H+
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 250 KPYSC--EICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFS 307
+PY+C E C R F H +IH+G Q C IC ++F++
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ--------------CRICMRNFSRSD 48
Query: 308 PMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ H R HTGE+P++C++C + F H K H
Sbjct: 49 HLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 221 DKPYAC--KTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGND 278
++PYAC ++C R F L H H G KP+ C IC R F +H + H+G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 59
Query: 279 NRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLH 316
+K F +C+ICG+ F + H ++H
Sbjct: 60 ---------EKPF---ACDICGRKFARSDERKRHTKIH 85
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%)
Query: 145 CPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKG 204
C ++FS + H+ H KPFQC C + F L H HTG + C+ CG+
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 205 FQNKSYLIVHQRVH 218
F H ++H
Sbjct: 72 FARSDERKRHTKIH 85
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
Y C CGK F +KS H +H +PY C C + FK K L+ H H G+KPY C
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 256 ICGRGFITK 264
IC + F+ +
Sbjct: 70 ICAKRFMWR 78
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPY 224
DK + C +C K F K D H + H G Y C CGK F+ K +L+ H ++H+ KPY
Sbjct: 8 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPY 66
Query: 225 ACKTCPRSFKTKQTLLDH 242
C C + F + + H
Sbjct: 67 ECNICAKRFMWRDSFHRH 84
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 219 STDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGND 278
S DK Y C+ C +SF K H + H+G++PY C +CG+ F K H KIH+G
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG-- 62
Query: 279 NRQYPCPVCKKLFVSK 294
+ Y C +C K F+ +
Sbjct: 63 IKPYECNICAKRFMWR 78
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 144 RCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGK 203
+C K F+ ++ + H+S H +P+ C C K+F+ K L H HTG YECN C K
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 204 GFQNKSYLIVHQRVHSTDKPY 224
F + H+ V S K Y
Sbjct: 74 RFMWRDSF--HRHVTSCTKSY 92
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 299 CGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
CG+SFT S H +H G RPY C +C K F + L+ H K H
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 142 CDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYE 195
C C KKF H+ H KP++C C KRF + H T YE
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYE 93
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
C+ CG+SF+ S ++ H+R HTGE+PY C+ C KAF+ RS L+ H + H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 193 RYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPY 252
R Y+C+ CGK F + S L H+R H+ +KPY C C ++F + L+ H H G P
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Query: 253 S 253
S
Sbjct: 76 S 76
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 166 KPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKP 223
+ ++C +C K F L +H HTG Y+C+ CGK F +S+LI H RVH+ P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGN 277
+ Y C C +SF L H H G KPY C+ CG+ FI + H ++H+G+
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPM 309
+ Y C+ CG+ F H++ H+G P C+ CG++F Q S +
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEK------PY--------KCDECGKAFIQRSHL 62
Query: 310 AIHKRLHTGERPYS 323
H R+HTG P S
Sbjct: 63 IGHHRVHTGSGPSS 76
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKP 223
DKP++C +C+ FR K L H+ HTG Y CN CG F + L H R+HS +KP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
DKPY C C SF+ K L H+ H G KPY C ICG F K+H +IHSG
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPM 309
KPY C+ C F KG SH+ +H+G + CNICG F + + +
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYR--------------CNICGAQFNRPANL 61
Query: 310 AIHKRLHTGERP 321
H R+H+GE+P
Sbjct: 62 KTHTRIHSGEKP 73
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
Y+C+ C F+ K L H+ VH+ +KPY C C F L H H G KP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
C+ C SF +A HK +HTGE+PY C +C F + L H + H
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 5/130 (3%)
Query: 178 RSKLGLDEH-EAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTK 236
R K+ D+H E GR Y C C + + + L H +HS +K Y C+ C + F
Sbjct: 4 RMKVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLA 63
Query: 237 QTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQK-IHSGN---DNRQYPCPVCKKLFV 292
+ HE H G + Y C CG+ FI SH K +HS + D++ Y C+ L +
Sbjct: 64 EYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQI 123
Query: 293 SKSCNICGQS 302
+ + +S
Sbjct: 124 RQYAYLSDRS 133
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 142 CDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNAC 201
C C + + L H + H +K + C CEK F +HE HTG Y+C AC
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 202 GKGFQNKSYLIVH-QRVHSTD-----KPYACKTCPRSFKTKQ 237
GK F N ++ H + VHS D K Y C RS + +Q
Sbjct: 85 GKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPC-RSLQIRQ 125
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 22/99 (22%)
Query: 248 GVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFS 307
G Y C +C R ++ + H IHS ++YPC C+K+F
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWE--KKYPCRYCEKVF---------------- 60
Query: 308 PMA----IHKRLHTGERPYSCELCNKAFVSRSTLMVHKK 342
P+A H+ HTGER Y C C K+F++ + H K
Sbjct: 61 PLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIK 99
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%)
Query: 168 FQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACK 227
+ C C++ + L H H+ +Y C C K F Y H+ H+ ++ Y C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 228 TCPRSFKTKQTLLDH 242
C +SF Q + H
Sbjct: 83 ACGKSFINYQFMSSH 97
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGV- 249
+G C CGK F++ +L H+ HS +KPY+C C FK K + H H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 250 -KPYSCEICGRGFITKGLCKSH-QKIHSG 276
KPY C+ CG+GF H +++HSG
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 170 CFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVH--STDKPYACK 227
C C K FR L+ H+ H+G Y C CG F+ K + H R H S KPY C+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 228 TCPRSFKTKQTLLDHENRHM 247
+C + F + DH N H+
Sbjct: 70 SCGKGF----SRPDHLNGHI 85
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%)
Query: 225 ACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPC 284
AC+ C + F+ L H+ H G KPYSC +CG F K H + H G+ + Y C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 285 PVCKKLF 291
C K F
Sbjct: 69 QSCGKGF 75
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 142 CDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYE--YECN 199
C+ C K F + N H +H +KP+ C C RF+ K + H H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 200 ACGKGFQNKSYLIVH-QRVHS 219
+CGKGF +L H ++VHS
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHS 90
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 295 SCNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+C ICG+ F + HK H+GE+PYSC +C F + + H + H
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 248 GVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFS 307
G +CEICG+ F H+ HSG + Y CPVC G F +
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGE--KPYSCPVC------------GLRFKRKD 49
Query: 308 PMAIHKRLHTGE--RPYSCELCNKAFVSRSTLMVHKKK 343
M+ H R H G +PY C+ C K F L H K+
Sbjct: 50 RMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQ 87
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 173 CEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC--KTCP 230
C K FR + +H H R + C CGK F S L HQ VH+ +KP+ C + C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRV-HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 231 RSFKTKQTLLDHENRHMGVKPYSCEI--CGRGFITKGLCKSHQKIHSGNDNRQ 281
+ F L H H G +PY C C + F KSH H+ N Q
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 227 KTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPV 286
K C + F+ + H + H G + + C CG+ F+ K HQ +H+G + + C
Sbjct: 11 KGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGE--KPFQCTF 67
Query: 287 CKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCEL--CNKAFVSRSTLMVHKKKH 344
CG+ F+ + H R+HTG+RPY C CNK F + L H H
Sbjct: 68 ----------EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 139 LHKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCF--KCEKRFRSKLGLDEHEAKHTGRYEY 196
+H C C K F +K H H +KPFQC C KRF L H HTG Y
Sbjct: 34 VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 93
Query: 197 EC--NACGKGFQNKSYLIVHQRVHSTDK 222
C + C K F + L H H+ K
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTHAKAK 121
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 21/172 (12%)
Query: 145 CPKKFSSLAKYNFHVSNHGVDKPFQCFK--CEKRFRSKLGLDEHEAKHTGRYEYECNA-- 200
C ++ K H+ H +KPF C + CEK F S L H HTG + C++
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 201 CGKGFQNKSYLIVH-QRVHSTDK-PYAC--KTCPRSFKTKQTLLDHENRHMGVKPYSC-- 254
C F K+ + H R H+ Y C + C ++FK L H+ H PY C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 255 EICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQF 306
E C + F K H+K+H+G YPC SC+ G+++T +
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAG-----YPCK------KDDSCSFVGKTWTLY 180
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 16/150 (10%)
Query: 201 CGKGFQNKSYLIVHQRVHSTDKPYACKT--CPRSFKTKQTLLDHENRHMGVKPYSCEI-- 256
CG + L H H+ +KP+ CK C + F + L H H G K ++C+
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 257 CGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLH 316
C F TK K H NR + +C ++V N CG++F + + + +H+ H
Sbjct: 80 CDLRFTTKANMKKH-------FNRFHNIKIC--VYVCHFEN-CGKAFKKHNQLKVHQFSH 129
Query: 317 TGERPYSC--ELCNKAFVSRSTLMVHKKKH 344
T + PY C E C+K F S L H+K H
Sbjct: 130 TQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 62/154 (40%), Gaps = 20/154 (12%)
Query: 173 CEKRFRSKLGLDEHEAKHTGRYEYEC--NACGKGFQNKSYLIVHQRVHSTDKPYACKT-- 228
C + L H KHTG + C C KGF + +L H H+ +K + C +
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 229 CPRSFKTKQTLLDHENRHMGVK--PYSC--EICGRGFITKGLCKSHQKIHSGNDNRQYPC 284
C F TK + H NR +K Y C E CG+ F K HQ H+ Y C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT--QQLPYEC 137
Query: 285 PVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTG 318
P C + F+ S + H+++H G
Sbjct: 138 PH----------EGCDKRFSLPSRLKRHEKVHAG 161
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRH 246
Y C CGK F S L+ HQRVH+ +KPY C C ++F L++H+ H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
+KP+ C +C K F L +H+ HTG Y+C CGK F S LI HQR+H++
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
C CG++F++ S + H+R+HTGE+PY C C KAF S L+ H++ H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHS 275
+KPY C C ++F L+ H+ H G KPY C CG+ F +HQ+IH+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPM 309
KPY C CG+ F + HQ++H+G + C CG++F+Q S +
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYK--------------CLECGKAFSQNSGL 58
Query: 310 AIHKRLHT 317
H+R+HT
Sbjct: 59 INHQRIHT 66
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 140 HKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHT 191
+ C C K FS + H H +KP++C +C K F GL H+ HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C KAF S L+ H++ H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVH 37
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 23/129 (17%)
Query: 227 KTCPRSFKTKQTLLDHEN-RHMGVKPYSCEIC--------GRGFITKGLCKSHQKIHSGN 277
K+C R+F T L+ H H+G + +C G+ F K +H ++H+G
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Query: 278 DNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCEL--CNKAFVSRS 335
+ +PCP CG+ F + + IHKR HTGE+P+ CE C++ F + S
Sbjct: 89 --KPFPCPF----------PGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSS 136
Query: 336 TLMVHKKKH 344
H H
Sbjct: 137 DRKKHMHVH 145
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 194 YEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC--KTCPRSFKTKQTLLDHENRHMGVKP 251
Y EC GK F+ K L+ H RVH+ +KP+ C C + F + L H+ H G KP
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP 120
Query: 252 YSCEI--CGRGFITKGLCKSHQKIHSGN 277
+ CE C R F K H +H+ +
Sbjct: 121 FKCEFEGCDRRFANSSDRKKHMHVHTSD 148
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 131 TGKPESKSLHKC--DRCPKKFSSL-AKYNF--HVSNHGVDKPFQC--FKCEKRFRSKLGL 183
G PE + H C + CP++ S AKY H+ H +KPF C C K F L
Sbjct: 50 VGGPEQNN-HVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENL 108
Query: 184 DEHEAKHTGRYEYEC--NACGKGFQNKSYLIVHQRVHSTDK 222
H+ HTG ++C C + F N S H VH++DK
Sbjct: 109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%)
Query: 163 GVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDK 222
G P +C C K F K L H HTG Y+C C + S L H R+HS ++
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
Query: 223 PYACKTCPRSFKTKQTLLDHENRHMG 248
P+ C+ CP + + L H H G
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
++C CGK F K L H R H+ KPY CKTC + +L H H +P+ C+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 256 ICGRGFITKGLCKSHQKIHSGNDN 279
IC H + H+G+
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGDSG 92
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 251 PYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMA 310
P+ CE+CG+ F K K+H + H+G + C C + S +
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYK--------------CKTCDYAAADSSSLN 53
Query: 311 IHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
H R+H+ ERP+ C++C A + S L VH + H
Sbjct: 54 KHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%)
Query: 132 GKPESKSLHKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHT 191
G S HKC+ C K FS K H+ H KP++C C+ L++H H+
Sbjct: 1 GSSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 192 GRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
++C C +N S L VH R H+ D
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 14/97 (14%)
Query: 223 PYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQY 282
P+ C+ C + F K L H H GVKPY C+ C H +IHS D R +
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS--DERPF 65
Query: 283 PCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGE 319
C +C + S+ S + +H R HTG+
Sbjct: 66 KCQICP--YASR----------NSSQLTVHLRSHTGD 90
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 141 KCDRCPKKFSSLAKYNFHVSN---HGVDKPFQCFK--CEKR---FRSKLGLDEHEAKHTG 192
+ D C ++F S + H+++ HG K F C C + F+++ L H +HTG
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 193 RYEYECN--ACGKGFQNKSYLIVHQRVHSTDKPYAC--KTCPRSFKTKQTLLDHENR-HM 247
++C C K + L H R H+ +KPY C + C ++F H+NR H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 248 GVKPYSCEICG 258
KPY C++ G
Sbjct: 125 NEKPYVCKLPG 135
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 25/157 (15%)
Query: 199 NACGKGFQNKSYLIVH---QRVHSTDKPYACKT--CPRS---FKTKQTLLDHENRHMGVK 250
+ C + F ++ L+ H + +H K + C C R FK + L+ H RH G K
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 251 PYSC--EICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSP 308
P+ C E C + + K+H + H+G + Y C C ++F+ S
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRSHTG--EKPYMCEH----------EGCSKAFSNASD 114
Query: 309 MAIHK-RLHTGERPYSCEL--CNKAFVSRSTLMVHKK 342
A H+ R H+ E+PY C+L C K + S+L H K
Sbjct: 115 RAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 47/120 (39%), Gaps = 31/120 (25%)
Query: 128 VIDTGKPESKSLHKC--DRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDE 185
V+ + + HKC + C K +S L H+ +H +KP+ C E
Sbjct: 56 VVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC--------------E 101
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQ-RVHSTDKPYACKT--CPRSFKTKQTLLDH 242
HE C K F N S HQ R HS +KPY CK C + + +L H
Sbjct: 102 HE------------GCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 293 SKSCNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
S+ C+ CG+ F + IH R HTGE+PY CE C A +++L H ++H
Sbjct: 4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 197 ECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRH 246
EC+ CGK F++ YL +H R H+ +KPY C+ C + K +L H RH
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 141 KCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKH 190
+C C K F S N H+ H +KP++C CE K L H +H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 226 CKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIH 274
C C + F++ L H H G KPY CE C K + H + H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 22/50 (44%)
Query: 169 QCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVH 218
+C C K FRS L+ H HTG Y+C C K+ L H H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 200 ACGKGFQNKSYLIVHQRVHSTDKPYAC--KTCPRSFKTKQTLLDHENRHMGVKPYSCEIC 257
C K + S+L H R H+ +KPY C + C F L H +H G KP+ C +C
Sbjct: 22 GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 258 GRGFITKGLCKSHQKIH 274
R F H K H
Sbjct: 82 NRSFSRSDHLALHMKRH 98
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 135 ESKSLHKCDR--CPKKFSSLAKYNFHVSNHGVDKPFQCFK--CEKRFRSKLGLDEHEAKH 190
E + +H CD C K ++ + H+ H +KP++C C+ RF L H KH
Sbjct: 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVH 218
TG ++C C + F +L +H + H
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 173 CEKRFRSKLGLDEHEAKHTGRYEYECN--ACGKGFQNKSYLIVHQRVHSTDKPYACKTCP 230
C K + L H HTG Y+C C F L H R H+ KP+ C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 231 RSFKTKQTLLDHENRH 246
RSF L H RH
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 257 CGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLH 316
C + + K+H + H+G + Y C + C F + + H R H
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGE--KPYKC----------TWEGCDWRFARSDELTRHYRKH 70
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
TG +P+ C +CN++F L +H K+H
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 200 ACGKGFQNKSYLIVHQRVHSTDKPYACKT--CPRSFKTKQTLLDHENRHMGVKPYSCEIC 257
CGK + S+L H R H+ +KPY C C F L H +H G +P+ C+ C
Sbjct: 12 GCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 258 GRGFITKGLCKSHQKIH 274
R F H K H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 257 CGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLH 316
CG+ + K+H + H+G + Y C + CG F + + H R H
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGE--KPYHCDW----------DGCGWKFARSDELTRHYRKH 60
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
TG RP+ C+ C++AF L +H K+H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 173 CEKRFRSKLGLDEHEAKHTGRYEYECN--ACGKGFQNKSYLIVHQRVHSTDKPYACKTCP 230
C K + L H HTG Y C+ CG F L H R H+ +P+ C+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 231 RSFKTKQTLLDHENRHM 247
R+F L H RH
Sbjct: 73 RAFSRSDHLALHMKRHF 89
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 138 SLHKCDR--CPKKFSSLAKYNFHVSNHGVDKPFQCFK--CEKRFRSKLGLDEHEAKHTGR 193
+ H CD C K ++ + H+ H +KP+ C C +F L H KHTG
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 194 YEYECNACGKGFQNKSYLIVHQRVH 218
++C C + F +L +H + H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 200 ACGKGFQNKSYLIVHQRVHSTDKPYACKT--CPRSFKTKQTLLDHENRHMGVKPYSCEIC 257
CGK + S+L H R H+ +KPY C C F L H +H G +P+ C+ C
Sbjct: 13 GCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 258 GRGFITKGLCKSHQKIH 274
R F H K H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 257 CGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLH 316
CG+ + K+H + H+G + Y C + CG F + + H R H
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGE--KPYHCDW----------DGCGWKFARSDELTRHYRKH 61
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
TG RP+ C+ C++AF L +H K+H
Sbjct: 62 TGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 173 CEKRFRSKLGLDEHEAKHTGRYEYECN--ACGKGFQNKSYLIVHQRVHSTDKPYACKTCP 230
C K + L H HTG Y C+ CG F L H R H+ +P+ C+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 231 RSFKTKQTLLDHENRHM 247
R+F L H RH
Sbjct: 74 RAFSRSDHLALHMKRHF 90
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 138 SLHKCDR--CPKKFSSLAKYNFHVSNHGVDKPFQCFK--CEKRFRSKLGLDEHEAKHTGR 193
+ H CD C K ++ + H+ H +KP+ C C +F L H KHTG
Sbjct: 5 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 64
Query: 194 YEYECNACGKGFQNKSYLIVHQRVH 218
++C C + F +L +H + H
Sbjct: 65 RPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 224 YACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSH-QKIHSGN 277
+ C+ C R+F ++ L H H KPY C +C R F + L H QKIHSGN
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKK 343
C +C ++F + + H R HT E+PY C LCN+AF R L+ H +K
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDH 242
+ C C + F + +L H R H+ +KPY C C R+F + L+ H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 168 FQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVH-QRVHSTD 221
F C C + F + L H HT Y C C + F + LI H Q++HS +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 252 YSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNI 298
+ CE+C R F + K H + H+ + + YPC +C + F + I
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHT--NEKPYPCGLCNRAFTRRDLLI 47
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKI 273
KP+ C+ C R+F L H H G KP++C+ICGR F K H+ I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFV 332
C IC ++F++ + H R HTGE+P++C++C + F
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVK 250
++C C + F +L H R H+ +KP+AC C R F D RH ++
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS----DERKRHRDIQ 54
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 166 KPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGF 205
KPFQC C + F L H HTG + C+ CG+ F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 249 VKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFV 292
+KP+ C IC R F +H + H+G + + C +C + F
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTG--EKPFACDICGRKFA 42
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 141 KCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRF 177
+C C + FS H+ H +KPF C C ++F
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHSTDK 222
+G Y CN CGK F +KSYLIVHQR+H+ +K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+PY C C K F S+S L+VH++ H
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIH 33
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGER 320
CN CG+ F+ S + +H+R+HTGE+
Sbjct: 13 CNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 219 STDKPYACKTCPRSFKTKQTLLDHENRHMGVK 250
S +KPY C C + F +K L+ H+ H G K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 248 GVKPYSCEICGRGFITKGLCKSHQKIHSG 276
G KPY C CG+ F +K HQ+IH+G
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTG 35
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
YEC+ CGK F KS LI+HQR+H+ +KP
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C+ CG++F + S + +H+R+HTGE+P
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
ER Y C C KAF +STL++H++ H
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIH 35
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
++ Y C C ++F K TL+ H+ H G KP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
CN CG+++ S ++ H+R H G RP SC C K F +S + H K H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 220 TDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIH 274
+++P+ C C ++++ L H H+G +P SC CG+ F + H K+H
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKP 223
++PF C C K +R GL H H G C CGK F+++S + H +VH +KP
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ-NKP 59
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGV 249
+ CN CGK +++ S L H+R H +P +C C + F+ + + NRH+ V
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEV----NRHLKV 54
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y C+ CGK F +KSYLI+H R HS +KP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C KAF S+S L++H + H
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C ++F +K L+ H H G KP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C+ CG++F+ S + IH R H+GE+P
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C CG+ F +K H + HSG
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSG 37
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHSTDKP 223
+G Y C+ CGK F++KSYLI+H R H+ +KP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
+G +PY C C KAF S+S L++H + H
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTH 33
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
KPY C C ++F++K L+ H H G KP
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C+ CG++F S + IH R HTGE+P
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 248 GVKPYSCEICGRGFITKGLCKSHQKIHSG 276
GVKPY C CG+ F +K H + H+G
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTG 35
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
YEC CGK F ++LI HQRVH+ +KP
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C CG++F+Q + + H+R+HTGE+P
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY CK C ++F L+ H+ H G KP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C+ C KAF + L+ H++ H
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGN 277
KPY C+ CG+ F HQ++H+G
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGE 38
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
YEC+ CGK F ++ L VHQR+HS KP
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C +C KAF R +L VH++ H
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 22/26 (84%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C++CG++F+ +++H+R+H+G++P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C +CG+ F + HQ+IHSG
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C ++F +Q+L H+ H G KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+CN CGK F++ SYL HQR+H+ +KP
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG+ F S ++ H+R+HTGE+P
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C CG+ F HQ+IH+G
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTG 37
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C + F+ L H+ H G KP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KP++C +C K FR L H+ HTG
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTG 37
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 3/34 (8%)
Query: 288 KKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERP 321
KKLF CN C ++FTQ S + +H+R+HTGE+P
Sbjct: 10 KKLF---KCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
++CN C K F S L VHQR+H+ +KP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 222 KPYAC--KTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHS 275
+PYAC ++C R F L H H G KP+ C IC R F +H + H+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 280 RQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMV 339
R Y CPV C + F++ + H R+HTG++P+ C +C + F L
Sbjct: 18 RPYACPV----------ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 340 HKKKH 344
H + H
Sbjct: 68 HIRTH 72
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 166 KPFQC--FKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHS 219
+P+ C C++RF L H HTG+ ++C C + F +L H R H+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 194 YEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRH 246
Y +C + F L H R+H+ KP+ C+ C R+F L H H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 128 VIDTGKPESKSLHKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHE 187
V+ +P + + CDR +FS + H+ H KPFQC C + F L H
Sbjct: 13 VVPKMRPYACPVESCDR---RFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 188 AKHT 191
HT
Sbjct: 70 RTHT 73
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 249 VKPYSC--EICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQF 306
++PY+C E C R F H +IH+G Q C IC ++F++
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ--------------CRICMRNFSRS 62
Query: 307 SPMAIHKRLHT 317
+ H R HT
Sbjct: 63 DHLTTHIRTHT 73
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTD 221
Y CN CGK F++KSYLI+H R H+ +
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 320 RPYSCELCNKAFVSRSTLMVHKKKH 344
+PY C C KAF S+S L++H + H
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGE 319
CN CG++F S + IH R HTGE
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGE 38
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMG 248
KPY C C ++F++K L+ H H G
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 166 KPFQCFKCEKRFRSKLGLDEHEAKHTG 192
KP+ C +C K FRSK L H HTG
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 249 VKPYSCEICGRGFITKGLCKSHQKIHSGNDN 279
+KPY C CG+ F +K H + H+G
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGESG 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG++F+Q S +A H+R+HTGE+P
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+CN CGK F S L HQR+H+ +KP
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C CG+ F HQ+IH+G
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTG 37
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C ++F L H+ H G KP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C KAF S L H++ H
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIH 35
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
+G +ECN CGK F KS LI+HQR+H+ +
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGE 319
CN CG++F+ S + IH+R+HTGE
Sbjct: 13 CNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+ + C C KAF +S L++H++ H
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIH 33
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+CN CGK F+ +S L +HQ HS +KP
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C KAF +RS+L +H+ H
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATH 35
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG++F S +AIH+ H+GE+P
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKP 40
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C ++F+ + +L H+ H G KP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KP++C +C K FR++ L H+A H+G
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSG 37
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C CG+ F + HQ HSG
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSG 37
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
YEC+ CGK F KS L +HQR+H +KP
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C+ CG++F Q S +++H+R+H GE+P
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
ER Y C C KAF+ +STL +H++ H
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 252 YSCEICGRGFITKGLCKSHQKIHSG 276
Y C CG+ FI K HQ+IH G
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRG 37
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
++ Y C C ++F K TL H+ H G KP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHSTDKP 223
+G Y CN CGK F KS LIVH+ VH+ KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+PYSC C KAF +S L+VHK H
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVH 33
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 219 STDKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
S +KPY+C C ++F K L+ H+ H GVKP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 295 SCNICGQSFTQFSPMAIHKRLHTGERP 321
SCN CG++FT S + +HK +HTG +P
Sbjct: 12 SCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 248 GVKPYSCEICGRGFITKGLCKSHQKIHSG 276
G KPYSC CG+ F K H+ +H+G
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVHKGVHTG 35
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
+EC+ C K F KS LIVHQR H+ +KP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KP+ C C ++F TK L+ H+ H G KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+P+ C C KAF ++S L+VH++ H
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KPF+C +C+K F +K L H+ HTG
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTG 37
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+CN CGK F S L HQRVH+ +KP
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG++F+Q S +A H+R+HTGE+P
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C CG+ F HQ++H+G
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTG 37
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
KPY C C ++F L H+ H G KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
YEC+ CGK F KS L VHQ++H+ +KP
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 23/26 (88%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C+ICG+SFT+ S + +H+++HTGE+P
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C ICG+ F K HQ+IH+G
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTG 37
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C +C K+F +S L VH++ H
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C +SF K L H+ H G KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 299 CGQSFTQFSPMAIHKRLHTGERPYSCEL--CNKAFVSRSTLMVHKKKH 344
CG+++ + S + H R HTGE+P+SC C + F L H++ H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 200 ACGKGFQNKSYLIVHQRVHSTDKPYAC--KTCPRSFKTKQTLLDHENRH 246
CGK + S+L H R H+ +KP++C K C R F L H H
Sbjct: 24 GCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
YEC+ CGK F K LI HQR H+ +KP
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+ PY C C ++F K L+ H+ H G KP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E PY C C KAF + L+ H++ H
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTH 35
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 251 PYSCEICGRGFITKGLCKSHQKIHSG 276
PY C CG+ F K SHQ+ H+G
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAG 37
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C+ CG++F++ + H+R H GE+P
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHSTDKP 223
+G + C+ C K F +KSYL+VHQ+ H+ +KP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+P+ C C KAF S+S L+VH++ H
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 219 STDKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
S +KP+ C C ++F +K LL H+ H KP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y CN CGK F KS L HQR H+ +KP
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG++F+Q S ++ H+R HTGE+P
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C ++F K L H+ H G KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C CG+ F K + +HQ+ H+G
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTG 37
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C K F +S L H++ H
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KP+ C +C K F K L H+ HTG
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTG 37
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
YEC CGK F+ KS LI H+R H+ +KP
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+PY C C ++FKTK +L+ H H G KP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
+RPY C C KAF ++S+L+ H++ H
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSH 35
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C CG++F S + H+R HTGE+P
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+P++C +C K F++K L H HTG
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTG 37
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KP+ CE CG+GF T C SHQ+ HSG
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSG 37
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
++C CGKGF S HQR HS +KP
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KP+ C+ C + F T H+ H G KP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+P+ CE C K F + S H++ H
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSH 35
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
+G+ Y CN CGK F KS LI+H+R+H+ +
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
+G++PY C C KAF +S L++H++ H
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIH 33
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGE 319
CN CG++F S + IH+R+HTGE
Sbjct: 13 CNECGKAFGLKSQLIIHERIHTGE 36
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 219 STDKPYACKTCPRSFKTKQTLLDHENRHMG 248
S KPY C C ++F K L+ HE H G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 248 GVKPYSCEICGRGFITKGLCKSHQKIHSGNDN 279
G KPY C CG+ F K H++IH+G
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHERIHTGESG 38
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
+EC CGK F KS L +HQ++H+ +KP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 22/26 (84%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C CG++FT+ S +++H+++HTGE+P
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
K + C CG+ F K HQKIH+G
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTG 37
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 322 YSCELCNKAFVSRSTLMVHKKKH 344
+ C C KAF +STL +H+K H
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIH 35
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
+G YEC CGK F KS LI+HQR H+ +
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+PY C C KAF +S L++H++ H
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTH 33
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 219 STDKPYACKTCPRSFKTKQTLLDHENRHMG 248
S +KPY C C ++F K L+ H+ H G
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGE 319
C CG++F S + IH+R HTGE
Sbjct: 13 CTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 248 GVKPYSCEICGRGFITKGLCKSHQKIHSGNDN 279
G KPY C CG+ F K HQ+ H+G
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTHTGESG 38
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
YECN CGK F +S L HQ +H+ KP
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C KAF RS+L H+ H
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C ++F + +L H+ H G KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG++F+ S + H+ +HTG++P
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C CG+ F + +HQ IH+G
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTGR 193
+KP++C +C K F + L H+A HTG+
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGK 38
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
YEC+ CGK F KS L VHQR+H+ + P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C+ CG+SF + S + +H+R+HTGE P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGND 278
KPY C CG+ FI K HQ+IH+G +
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGEN 39
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C K+F+ +S L VH++ H
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C +SF K L H+ H G P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTD 221
YEC+ CGK F S LIVHQR HS +
Sbjct: 13 YECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
T E+PY C C KAF+ S L+VH++ H
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTH 35
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGNDN 279
KPY C CG+ FI HQ+ HSG
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGESG 40
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGE 319
C+ CG++F + S + +H+R H+GE
Sbjct: 15 CSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
++CN CGK F ++LI HQR+H+ +KP
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG+SF Q + + H+R+HTGE+P
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
+P+ C CG+ FI HQ+IH+G
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTG 37
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
ERP+ C C K+F+ + L+ H++ H
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
++P+ C C +SF L+ H+ H G KP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+C+ CGK F S+L HQRVH+ +KP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C++CG+ F+Q S + H+R+HTGE+P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
K Y C++CG+ F ++HQ++H+G
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTG 37
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYS 323
C CG+SF+Q +A+H+RLHTG P S
Sbjct: 13 CKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 219 STDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
S +KPY CK C +SF + +L HE H G P S
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+PY C+ C K+F R +L VH++ H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLH 33
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHSTDKP 223
+G Y+C CGK F + L VH+R+H+ P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 248 GVKPYSCEICGRGFITKGLCKSHQKIHSGND 278
G KPY C+ CG+ F +G H+++H+G+
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGSG 37
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KP+QC +C K F + L HE HTG
Sbjct: 8 EKPYQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHSTDKP 223
+G+ YEC CGK F+ K L +H+R+H+ P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYS 323
C CG+SF Q + +H+R+HTG P S
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 219 STDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
S + Y C+ C +SF+ K +L HE H G P S
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
+G+R Y C+ C K+F + +L +H++ H
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 248 GVKPYSCEICGRGFITKGLCKSHQKIHSGND 278
G + Y C+ CG+ F KG H++IH+G+
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIHTGSG 37
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
+EC CGK F S LIVHQR+H+ + P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C CG+SF+ S + +H+R+HTGE P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+P+ C C K+F S L+VH++ H
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KP+ C+ C +SF L+ H+ H G P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHS 219
YECN CGK F KS LIVH+R H+
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHA 36
Score = 35.0 bits (79), Expect = 0.056, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C KAF+ +S L+VH++ H
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTH 35
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C CG+ FI K L H++ H+G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 31.2 bits (69), Expect = 0.81, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGV 249
+KPY C C ++F K L+ HE H GV
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGV 38
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
++C+ CG+GF KS+L HQR+H+ +KP
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 293 SKSCNICGQSFTQFSPMAIHKRLHTGERP 321
S C+ CG+ FT S + H+R+HTGE+P
Sbjct: 12 SHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 249 VKPYSCEICGRGFITKGLCKSHQKIHSG 276
K + C CGRGF K HQ+IH+G
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTG 37
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y C CGK F+ S L+ HQRVHS +KP
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY CK C +SF+ LL H+ H G KP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C CG+SF S + H+R+H+GE+P
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY+C+ CG+ F HQ++HSG
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSG 37
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY+C+ C K+F S L+ H++ H
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVH 35
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y C CGK F ++S LI HQ++H+ +KP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
ERPY C +C KAF RS L+ H+K H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C +CG++FT S + H+++HTGE+P
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
+PY C +CG+ F + HQKIH+G
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
++PY C C ++F + L+ H+ H G KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 195 EYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDH 242
+Y C CG + S L H R H+ +PY C C SFKTK L H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKK 342
C CG + S + H R HT RPY C CN +F ++ L H K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 20/49 (40%)
Query: 224 YACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQK 272
Y C+ C K L H H V+PY C C F TKG H K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y C CGK F K+ L HQR+H+ +KP
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C CG++F Q + + H+R+HTGE+P
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C ++F K L H+ H G KP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C CG+ F K HQ+IH+G
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C KAF ++ L H++ H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KP++C +C K F K L +H+ HTG
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTG 37
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTD 221
YECN C K F KS L+VHQR H+ +
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C KAF ++S LMVH++ H
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMG 248
+KPY C C ++F TK L+ H+ H G
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KP++C +C+K F +K L H+ HTG
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C C + F TK HQ+ H+G
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGE 319
CN C ++F S + +H+R HTGE
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYA 225
+G+ CN CGK F+ S L HQR+HS +KP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSG 40
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG++F Q S ++ H+R+H+GE+P
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 219 STDKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
S KP C C ++F+ L H+ H G KP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
KPY C C ++F K L+ H+ H GVKP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y C+ C K F KS LIVHQR H+ KP
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 320 RPYSCELCNKAFVSRSTLMVHKKKH 344
+PY C C K F +S L+VH++ H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C+ C ++F+ S + +H+R HTG +P
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y C CGK F ++S L HQ++H+ +KP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C KAF RS L H+K H
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C CG++FT S + H+++HTGE+P
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C CG+ F + +HQKIH+G
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C ++F + L H+ H G KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDK 222
++CN CGKGF +S+L H R+HS +K
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
ERP+ C C K F RS L H + H
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGER 320
CN CG+ F + S +A H RLH+ E+
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG+SF Q S + H+R+HTGE+P
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y CN CGK F KS+L H+R+H+ +KP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C CG+ FI K H++IH+G
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTG 37
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C +SF K L H H G KP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C K+F+ +S L H++ H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIH 35
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y C+ CGK F K LIVH RVH+ P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C+ C KAF + +L+VH + H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYS 323
C+ CG++F+Q + +H R+HTG P S
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
+KPY C C ++F K +L+ H H G P S
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGN 277
KPY C+ CG+ F KG H ++H+G+
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 216 RVHSTDKPYACKTCPRSFKTKQTLLDHENRH----MGVKPYSCEICGRGFITKGLCKSHQ 271
R H+ +KPYAC C ++F+ KQ L H R+ + C CG+ F + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 272 KIHSGNDN 279
+G D
Sbjct: 68 DNCAGPDG 75
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 314 RLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
R HTGE+PY+C C+K F + L +H K++
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 38
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 162 HGVDKPFQCFKCEKRFRSKLGLDEHEAK-HTGRY---EYECNACGKGFQNKSYLIVH 214
H +KP+ C C+K FR K LD H + H + + C+ CGK F ++ + H
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 246 HMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQ 305
H G KPY+C C + F K L H K R + FV C+ CG++FT+
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFK-------RYHDPNFVPAAFV---CSKCGKTFTR 59
Query: 306 FSPMAIH 312
+ MA H
Sbjct: 60 RNTMARH 66
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
+EC CGK F S L HQR+H+ +KP
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C CG+SF+ S +A H+R+HTGE+P
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KP+ C C +SF L H+ H G KP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KP+ C CG+ F +HQ+IH+G
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTG 37
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
+G YEC+ CGK F K LI HQR H+ +
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE PY C C KAF + L+ H++ H
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 219 STDKPYACKTCPRSFKTKQTLLDHENRHMG 248
S + PY C C ++F K L+ H+ H G
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 248 GVKPYSCEICGRGFITKGLCKSHQKIHSG 276
G PY C CG+ F K SHQ+ H+G
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHAG 35
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG+ FTQ S +A H+R+HTG +P
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+CN CGK F S+L H+RVH+ KP
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C K F S L H++ H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C + F L H H G KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG+ FTQ S +A H+ +HTGE+P
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+CN CGK F S+L H+ +H+ +KP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG+ FTQ S +A H+ +HTGE+P
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+CN CGK F S+L H+ +H+ +KP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C + F L H H G KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
YEC+ C K F + + L HQRVHS +KP
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C++C KAF ++L H++ H
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C++C + F HQ++HSG
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSG 37
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C ++F +L H+ H G KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 200 ACGKGFQNKSYLIVHQRV-HSTDKPYACK--TCPRSFKTKQTLLDHENRHMGVKPYSCEI 256
CG+ F N+ YL H++ H K ++C C +SF K+ L +H H + Y CE
Sbjct: 14 GCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
Query: 257 CG 258
G
Sbjct: 74 SG 75
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 173 CEKRFRSKLGLDEHEA-KHTGRYEYECN--ACGKGFQNKSYLIVHQRVHSTDKPYACK 227
C + F ++ L+ H+ +H + + C ACGK F K +L H ++HS + Y C+
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 72
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG+ FTQ S + H R+HTGE+P
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+CN CGK F S+L H R+H+ +KP
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C + F L +H H G KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C CG+ F +H +IH+G
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTG 37
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 201 CGKGFQNKSYLIVHQRVHSTDKPYACKT--CPRSFKTKQTLLDHENRHMGVKPYSCEI-- 256
CG + L H H+ +KP+ CK C + F + L H H G K ++C+
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 257 CGRGFITKGLCKSH 270
C F TK K H
Sbjct: 71 CDLRFTTKANMKKH 84
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 145 CPKKFSSLAKYNFHVSNHGVDKPFQCFK--CEKRFRSKLGLDEHEAKHTGRYEYECNA-- 200
C ++ K H+S H +KPF C + CEK F S L H HTG + C++
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 201 CGKGFQNKSYLIVH-QRVHS 219
C F K+ + H R H+
Sbjct: 71 CDLRFTTKANMKKHFNRFHN 90
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 299 CGQSFTQFSPMAIHKRLHTGERPYSC--ELCNKAFVSRSTLMVHKKKH 344
CG ++ + + H HTGE+P+ C E C K F S L H H
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 58
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 16/95 (16%)
Query: 250 KPYSCEI--CGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFS 307
K Y C CG + ++H H+G + +PC C + FT
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE--KPFPCKE----------EGCEKGFTSLH 49
Query: 308 PMAIHKRLHTGERPYSCEL--CNKAFVSRSTLMVH 340
+ H HTGE+ ++C+ C+ F +++ + H
Sbjct: 50 HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH 84
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+CN CGK F+ S L HQ +H+ +KP
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG++F S + H+ +HTGE+P
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C ++F+ L H+ H G KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KP++C +C K FR+ L H+ HTG
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C KAF + S L H+ H
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C CG+ F +HQ IH+G
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTG 37
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+CN CGK F S+L HQR+H+ KP
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG+ FTQ S +A H+R+HTG +P
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C + F L +H+ H GVKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C CG+ F +HQ+IH+G
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTG 37
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C K F S L H++ H
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIH 35
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGE 319
C CG++FTQ S ++IH+R+HTGE
Sbjct: 13 CQECGKAFTQSSCLSIHRRVHTGE 36
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+PY C+ C KAF S L +H++ H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVH 33
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
+G Y C CGK F S L +H+RVH+ +
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 248 GVKPYSCEICGRGFITKGLCKSHQKIHSGNDN 279
G KPY C+ CG+ F H+++H+G
Sbjct: 7 GEKPYVCQECGKAFTQSSCLSIHRRVHTGESG 38
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDK 222
+EC CGK F+ K L+ HQR+H+ +K
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KP+ C CG+ F KG +HQ+IH+G
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
KPF+C C K FR+K L H+ HTG
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVK 250
KP+ C C +SF+ K L+ H+ H G K
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGER 320
C CG+SF + H+R+HTGE+
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+C+ C K F K L+VHQR+H+ +KP
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 223 PYACKTCPRSFKTKQTLLDHENRHMGVKP 251
PY C C +SF K LL H+ H KP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 167 PFQCFKCEKRFRSKLGLDEHEAKHT 191
P++C +CEK F KL L H+ HT
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHT 36
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 321 PYSCELCNKAFVSRSTLMVHKKKH 344
PY C C K+F + L+VH++ H
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMH 35
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY+CE CG+ FI + HQ+IH+G
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTG 37
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y C CGK F + S L HQR+H+ +KP
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY+CE C KAF+ S L H++ H
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 295 SCNICGQSFTQFSPMAIHKRLHTGERP 321
+C CG++F S + H+R+HTGE+P
Sbjct: 14 NCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C+ C ++F L +H+ H G KP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+PY C C KAF +S L+VH+ H
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIH 33
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHS 219
+G Y C+ CGK F KS LIVHQ +H+
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHT 34
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 219 STDKPYACKTCPRSFKTKQTLLDHENRHMGV 249
S +KPY C C ++F K L+ H+ H GV
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 248 GVKPYSCEICGRGFITKGLCKSHQKIHSG 276
G KPY C CG+ F K HQ IH+G
Sbjct: 7 GEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 201 CGKGFQNKSYLIVHQRVHSTDKPYAC--KTCPRSFKTKQTLLDHENRHMGV---KPYSCE 255
CGK F+ + L VHQ H+ PY C + C + F L HE H G K SC
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 256 ICGRGF 261
G+ +
Sbjct: 69 FVGKTW 74
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 224 YAC--KTCPRSFKTKQTLLDHENRHMGVKPYSC--EICGRGFITKGLCKSHQKIHSGNDN 279
Y C + C ++FK L H+ H PY C E C + F K H+K+H+G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--- 58
Query: 280 RQYPCPVCKKLFVSKSCNICGQSFTQF 306
YP CKK SC+ G+++T +
Sbjct: 59 --YP---CKK---DDSCSFVGKTWTLY 77
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 299 CGQSFTQFSPMAIHKRLHTGERPYSC--ELCNKAFVSRSTLMVHKKKH 344
CG++F + + + +H+ HT + PY C E C+K F S L H+K H
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 173 CEKRFRSKLGLDEHEAKHTGRYEYEC--NACGKGFQNKSYLIVHQRVHSTDKPYACK--- 227
C K F+ L H+ HT + YEC C K F S L H++VH+ Y CK
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDD 65
Query: 228 TCPRSFKTKQTLLDH 242
+C KT L H
Sbjct: 66 SCSFVGKTWTLYLKH 80
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
YEC C K F K++L HQ+ H+ +KP
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY CK C ++F K L H+ H G KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C +C ++FTQ + +A H++ HTGE+P
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C++C+KAF ++ L H+K H
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGN 277
KPY C++C + F K HQK H+G
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGE 38
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KP++C C K F K L +H+ HTG
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTG 37
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
+ C+ CGK F +K+ LI+HQ++H+ ++P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C+ CG+ FT + + IH+++HTGERP
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E P+ C C K F ++ L++H+K H
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+ P+ C C + F K L+ H+ H G +P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 201 CGKGFQNKSYLIVHQRVHSTDKPYAC--KTCPRSFKTKQTLLDHENRHMGV---KPYSCE 255
CGK F+ + L VHQ H+ PY C + C + F L HE H G K SC
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 256 ICGRGF 261
G+ +
Sbjct: 69 FVGKTW 74
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 224 YAC--KTCPRSFKTKQTLLDHENRHMGVKPYSC--EICGRGFITKGLCKSHQKIHSGNDN 279
Y C + C ++FK L H+ H PY C E C + F K H+K+H+G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--- 58
Query: 280 RQYPCPVCKKLFVSKSCNICGQSFTQF 306
YP CKK SC+ G+++T +
Sbjct: 59 --YP---CKK---DDSCSFVGKTWTLY 77
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 299 CGQSFTQFSPMAIHKRLHTGERPYSC--ELCNKAFVSRSTLMVHKKKH 344
CG++F + + + +H+ HT + PY C E C+K F S L H+K H
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 173 CEKRFRSKLGLDEHEAKHTGRYEYEC--NACGKGFQNKSYLIVHQRVHSTDKPYACK--- 227
C K F+ L H+ HT + YEC C K F S L H++VH+ Y CK
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDD 65
Query: 228 TCPRSFKTKQTLLDH 242
+C KT L H
Sbjct: 66 SCSFVGKTWTLYLKH 80
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+C+ C K F+ S L VHQR+H+ +KP
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C++C +SF S + +H+R+HTGE+P
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C++C+K+F S+L VH++ H
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C +SF+ +L H+ H G KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C++C + F HQ+IH+G
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTG 37
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG++F+ +S + H+ +HTGE+P
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y CN CGK F S L HQ +H+ +KP
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 249 VKPYSCEICGRGFITKGLCKSHQKIHSG 276
VKPY C CG+ F +HQ IH+G
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTG 37
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
KPY C C ++F +L H+ H G KP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+CN CGK F S L HQ++H+ +KP
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG+ F++ S ++ H+++HTGE+P
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
++C CGK F S+L HQRVH+ +KP
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C CG+ FTQ S + H+R+HTGE+P
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KP+ CE CG+ F SHQ++H+G
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTG 37
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KPFQC +C KRF L H+ HTG
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTG 37
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+P+ CE C K F S L H++ H
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVH 35
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+C CGKG+ +K L +HQ+VH+ ++P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY CE CG+G+ +K HQK+H+G
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTG 37
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KP++C KC K + SK LD H+ HTG
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTG 37
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY CE C K + S+ L +H+K H
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C CG+ + + +H+++HTGERP
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C+ C + + +K L H+ H G +P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+C CGK F+ S+L+ H VHS ++P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C+ C ++F+ L+ H + H G +P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C++CG+ F H +HSG
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSG 37
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C +CG++F S + H +H+GERP
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C++C KAF S L+ H H
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVH 35
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+CN CGK F S+L+ H+ +H+ +KP
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG+ FTQ S + H+ +HTGE+P
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C + F L+ H H G KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C K F S L+ H+ H
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIH 35
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
++C CGKGF +S L VH ++H+ +KP
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C CG+ F++ S + +H +LHTGE+P
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+P+ C C K F RS L VH K H
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KPF+C +C K F + L+ H HTG
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTG 37
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KP+ C CG+GF + H K+H+G
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTG 37
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y C+ CGK F + L+ HQR+H+ +KP
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C+ CG++F + + H+R+HTGE+P
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C ++F L+ H+ H G KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C+ CG+ F HQ+IH+G
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTG 37
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C+ C KAF + L+ H++ H
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIH 35
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 208 KSYLIVHQRVHSTDKPYACKTCPRSFKTKQ 237
K+ L +H+R+H TD+P+ C C SF TKQ
Sbjct: 22 KAALRIHERIHCTDRPFKCNYC--SFDTKQ 49
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 309 MAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKK 343
+ IH+R+H +RP+ C C+ S L H KK
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y C CGK F +S LI HQ++H+ KP
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C KAF RS L+ H+K H
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C ++F + L+ H+ H KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHS 275
KPY C CG+ F + HQKIH+
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHT 36
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C CG+ FTQ S + H+R+HTGE+P
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
++C CGK F S L HQRVH+ +KP
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KP+ CE CG+ F SHQ++H+G
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTG 37
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KPF+C +C KRF L H+ HTG
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTG 37
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+P+ CE C K F S L H++ H
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KP+ C+ C + F L H+ H G KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KP++C++C K FR++ L H+ HTG
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDK 222
Y+C CGK F+ +S L HQ +H+ +K
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
T E+PY C C KAF +RS L H+ H
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIH 35
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVK 250
+KPY C C ++F+T+ L H+ H G K
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYP 283
KPY C CG+ F T+ +HQ IH+G + R P
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTG-EKRSGP 43
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
+G Y C CGK F KS+ I H+R+H+ +
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+PY C C KAF+ +S + H++ H
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIH 33
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 248 GVKPYSCEICGRGFITKGLCKSHQKIHSGNDN 279
G KPY C CG+ FI K +H++IH+G
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHERIHTGESG 38
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 219 STDKPYACKTCPRSFKTKQTLLDHENRHMG 248
S +KPY C C ++F K + HE H G
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGE 319
C CG++F + S H+R+HTGE
Sbjct: 13 CTECGKAFIRKSHFITHERIHTGE 36
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
++C CGK + + +L HQRVH+ +KP
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C CG+S+ Q + H+R+HTGE+P
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KPF+C +C K + ++ L +H+ HTG
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTG 37
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KP+ C C +S+ + L H+ H G KP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+C+ CGK F+ S+L HQ +H+ +KP
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C+ CG+ F + S +A H+ +HTGE+P
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KP++C +C K FR L H+ HTG
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTG 37
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C + F+ L H+ H G KP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 164 VDKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KPF+C C+K FR + L+ H HTG
Sbjct: 9 AEKPFRCDTCDKSFRQRSALNSHRMIHTG 37
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 219 STDKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+ +KP+ C TC +SF+ + L H H G KP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
T E+P+ C+ C+K+F RS L H+ H
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIH 35
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C+ C +SF Q S + H+ +HTGE+P
Sbjct: 15 CDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHSTDKP 223
T + C+ C K F+ +S L H+ +H+ +KP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 197 ECNACGKGFQNKSYLIVHQRVHSTDK 222
+C CGK F KS LI+HQR H DK
Sbjct: 14 KCTECGKAFCWKSQLIMHQRTHVDDK 39
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+P C C KAF +S L++H++ H
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTH 35
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGER 320
C+ CG+SFT S + IH++ HTGER
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDK 222
Y+C+ CGK F KS L +HQ+ H+ ++
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C K+F +S L +H+K H
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C CG+ F K + HQK H+G
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTG 37
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHSTDKP 223
+G +EC+ C K F S L++HQR+H+ + P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C+ C ++F+ S + IH+R+HTGE P
Sbjct: 13 CSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y C CGK F L+ H+R+HS +KP
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+K Y CK C +SF LL HE H G KP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C CG+SF++ + H+RLH+GE+P
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KPF C C K F +GL++H HTG
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTG 37
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C CG++F+ + H+R+HTGE+P
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
++C CGK F + L H+R+H+ +KP
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGER 320
C +CG++FTQ S + H R HTGE+
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 197 ECNACGKGFQNKSYLIVHQRVHSTDK 222
+C CGK F S LI H R H+ +K
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 320 RPYSCELCNKAFVSRSTLMVHKKKH 344
+P C +C KAF S+L+ H ++H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY C C KAF +S L +H++ H
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGER 320
C+ CG++FT+ S + IH++ HTGER
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDK 222
Y+C+ CGK F KS L +HQ+ H+ ++
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KP++C C K F K GL H+ HTG
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C CG+ F K HQ+ H+G
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVK 250
+KPY C C ++F K L H+ H G +
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 191 TGRYEYECNACGKGFQNKSYLIVHQRVHSTDKP 223
T + ++CN CGK F + ++L HQ +H+ + P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
CN CG++F+ + ++ H+ +H GE P
Sbjct: 15 CNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDK 222
Y+C CGKG+ + L +HQRVH +K
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY CE CG+G+ + HQ++H G
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 164 VDKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
V+KP++C C K + +L LD H+ H G
Sbjct: 9 VEKPYKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY CE C K + R L +H++ H
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 220 TDKPYACKTCPRSFKTKQTLLDHENRHMGVK 250
+KPY C+ C + + + L H+ HMG K
Sbjct: 9 VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGND 278
KPY CEICG F KSH +IH+G+
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSG 38
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
+KPY C+ C F+ QTL H H G P S
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYS 323
C ICG F + H R+HTG P S
Sbjct: 14 CEICGTRFRHLQTLKSHLRIHTGSGPSS 41
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDK 222
Y+C CGKG++ + L HQRVH+ +K
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KP++C +C K ++ +L LD H+ HTG
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTG 37
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C CG+G+ + HQ++H+G
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTG 37
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 314 RLHTGERPYSCELCNKAFVSRSTLMVH 340
R H+GE+PY C +C+ F T+ +H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMH 34
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 246 HMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKS 295
H G KPY C IC F G K H + ++ CP C + KS
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKS 59
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 161 NHGVDKPFQCFKCEKRFRSKLGLDEH-EAKHTGRY-EYECNACGKGFQNKSYLIVHQR-V 217
H +KP++C+ C RF + H KHT ++ C C KS L VH R
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ 68
Query: 218 HSTDKP 223
HS P
Sbjct: 69 HSYSGP 74
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 249 VKPYSCEICGRGFITKGLCKSHQKIHSG 276
++PYSC +CG+ F K ++H ++H+G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 295 SCNICGQSFTQFSPMAIHKRLHTG 318
SC++CG+ F+ M H R+HTG
Sbjct: 5 SCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY CE CG+GFI + +H +H+G
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTG 37
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+C CGKGF + L H VH+ +KP
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PY CE C K F+ R L H H
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C+ C + F ++ L H H G KP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 198 CNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENR 245
C CG+ F +K H R+ + + CK CP +F + L H N+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKK 343
C +CG+SF H RL + + C+ C F S L H K
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHS 275
KPYSC +CG+ F+ H ++H+
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+PYSC +C KAFV + L H + H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTD 221
Y CN CGK F ++L H RVH+ +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 295 SCNICGQSFTQFSPMAIHKRLHTGE 319
SCN+CG++F + + H R+HT E
Sbjct: 14 SCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
++C CGK F+ +L H R+H+ +KP
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C CG++F Q +A H R+HTGE+P
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KPF+C +C K FR + L H HTG
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTG 37
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KP+ CK C ++F+ L H H G KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C+ CG+ F Q S H+R+HTGE+P
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
+ C+ CGK F S I H+R+H+ +KP
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 293 SKSCNICGQSFTQFSPMAIHKRLHTGER 320
S +C+ CG++F S + IH+R+H GE+
Sbjct: 12 SHTCDECGKNFCYISALRIHQRVHMGEK 39
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDK 222
+ C+ CGK F S L +HQRVH +K
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase
pdb|3ZUT|B Chain B, The Structure Of Ost1 (D160a) Kinase
Length = 362
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 194 YEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
+E CNA G+ ++++ Q + +A + C R K + TLLD G
Sbjct: 103 FERICNA-GRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLD------GSPAPR 155
Query: 254 CEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNI--CGQSF 303
+IC G+ + S K G P + KK + K ++ CG +
Sbjct: 156 LKICAFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKVADVWSCGVTL 207
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 196 YECNACGKGFQNKSYLIVH-QRVHSTDKPYACKT 228
Y C +CGKGF +L H ++VH++++P+ C+
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 296 CNICGQSFTQFSPMAIH-KRLHTGERPYSCEL 326
C CG+ F++ + H K++HT ERP+ C++
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
With Gold
pdb|3ZUU|B Chain B, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
With Gold
Length = 362
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 194 YEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
+E CNA G+ ++++ Q + +A + C R K + TLLD G
Sbjct: 103 FERICNA-GRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLD------GSPAPR 155
Query: 254 CEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNI--CGQSF 303
+IC G+ + S K G P + KK + K ++ CG +
Sbjct: 156 LKICAFGYSKSSVLHSQPKDTVGTPAYIAPEVLLKKEYDGKVADVWSCGVTL 207
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+C+ CGK F ++L H+R+H+ +P
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C+ CG++F + + + H+R+HTG RP
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+KP++C +C K F L+EH HTG
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTG 37
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C ++F L +H H G +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C CG+ F C HQ++H+G
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTG 37
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+C CGK F + S HQR+H+ +P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C CG++F S H+RLHTG+RP
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+KPY C C ++F + H+ H G +P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 319 ERPYSCEL--CNKAFVSRSTLMVHKKKH 344
+RPYSC+ C+KAFV L+ HKK H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6
pdb|3UC4|B Chain B, The Crystal Structure Of Snf1-Related Kinase 2.6
Length = 362
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 194 YEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
+E CNA G+ ++++ Q + +A + C R K + TLLD G
Sbjct: 103 FERICNA-GRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLD------GSPAPR 155
Query: 254 CEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNI--CGQSF 303
+IC G+ + S K G P + KK + K ++ CG +
Sbjct: 156 LKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKVADVWSCGVTL 207
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+PYSC C + F + L+ H+K H
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 219 STDKPYACKTCPRSFKTKQTLLDHENRH 246
S +KPY+C C +F L+ H+ H
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMH 33
>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 361
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 194 YEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
+E CNA G+ ++++ Q + +A + C R K + TLLD G
Sbjct: 102 FERICNA-GRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLD------GSPAPR 154
Query: 254 CEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNI--CGQSF 303
+IC G+ + S K G P + KK + K ++ CG +
Sbjct: 155 LKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKVADVWSCGVTL 206
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 295 SCNICGQSFTQFSPMAIHKRLHTGERPYS 323
+C ICG+ F + HK H+GE+PYS
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 193 RYEYECNACGKGFQNKSYLIVHQRVHSTDKPYA 225
R + C CGK F++ +L H+ HS +KPY+
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger Domain:
Insights Into Adr1-Uas1 Protein-Dna Recognition
Length = 30
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 252 YSCEICGRGFITKGLCKSH-QKIHSGN 277
Y+C +C R F + L H QKIHSGN
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSGN 29
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 322 YSCELCNKAFVSRSTLMVHKKK 343
Y+C LCN+AF R L+ H +K
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQK 24
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHS 219
YEC CGK F K L+ HQ+ HS
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHS 36
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 251 PYSCEICGRGFITKGLCKSHQKIHSG 276
PY C CG+ F K SHQK HSG
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTHSG 37
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 248 GVKPYSCEICGRGFITKGLCKSHQKIHS 275
G +P+ C IC F TK C H K+H+
Sbjct: 4 GKRPFVCRICLSAFTTKANCARHLKVHT 31
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
++C+ CGK F +S L H VH+ +KP
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E+P+ C++C K+F RS L H H
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERP 321
C+ICG+SF S + H +HT E+P
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGND 278
KPY CE CG F+ ++H IH+G+
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSG 38
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKK 342
E PY C C K+F R +L VH++
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQR 32
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y C CGK F + L VHQR S P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
ERPY C C K F S L+ H K+H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDK 222
Y CN CGK F S+LI H + H +K
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREK 39
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHM 247
++PY C C ++F L++H RH
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHF 36
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHS 219
Y CN CGK F +L HQ++H+
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHT 36
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 248 GVKPYSCEICGRGFI-TKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSK 294
G Y C++C R + C+ + H N + YPCP C K F K
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNV-KVYPCPFCFKEFTRK 53
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 251 PYSCEICGRGFITKGLCKSHQKIHSG 276
P C CG+ F T G K H +IHSG
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSG 27
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGER 320
C C ++F Q + HKR+HTGER
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGER 39
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
KPY C+ C + FI G H+++H+G
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTG 37
>pdb|1WY6|A Chain A, Crystal Structure Of Hypothetical Protein [st1625p] From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
Length = 172
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 94 TVVKSDLIKDPIASDDNMEDGYMDEPETDINPKEVIDTGKPESKSLHKCDRCPKKFSSLA 153
T+VKS++I+ + + + DGY+DE K V++ K +KS + C S
Sbjct: 1 TIVKSEIIRKLMDAKKFLLDGYIDEG-----VKIVLEITKSSTKSEYNWFICNLLESIDC 55
Query: 154 KYNFHVSNHGVDKPFQCFKCE 174
+Y F V + + F KC+
Sbjct: 56 RYMFQVLDK-IGSYFDLDKCQ 75
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 196 YECNACGKGFQNKSYLIVHQR-VHSTDKP 223
YEC CGK F + LI H R H+ +KP
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 277 NDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAF 331
N + CP+C +L CG SF Q A HK+ + SC +C ++
Sbjct: 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
TG +P+ C C+++F L +H+K+H
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGV 249
KP+ C C RSF L H RHM V
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRHMLV 37
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 296 CNICGQSFTQFSPMAIHKRLHT---GERPYSCELCNKAFVSRSTLMVHKKK 343
C ICG + Q + + H+R H + CE C K F ++ H+ K
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 288 KKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERP 321
+K + + C++C F+Q S + +H+ +H GE+P
Sbjct: 10 EKTWKCRECDMC---FSQASSLRLHQNVHVGEKP 40
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 221 DKPYACKTCPRSFKTKQTLLDHENRHMGVKP 251
+K + C+ C F +L H+N H+G KP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|1JLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase Ptp-SlBR7
Length = 297
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 90 QSKSTVVKSDLIKDPIASDDNMEDGYMDEPETDINPKEV 128
QS S V+ ++D +AS ++ +M+ P ++PKE+
Sbjct: 13 QSASRVLTRSQLRDVVASSHLLQSEFMEIPMNFVDPKEI 51
>pdb|2LVH|A Chain A, Solution Structure Of The Zinc Finger Afv1p06 Protein From
The Hyperthermophilic Archaeal Virus Afv1
Length = 59
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 217 VHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGF 261
V S ++ Y C C +F+TK+ L+ H V P S + + F
Sbjct: 4 VSSMERVYQCLRCGLTFRTKKQLIRHLVNTEKVNPLSIDYYYQSF 48
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGN 277
K + C++CG+ F +KG KSH+ +H+ +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y+C+ CGK F L H H+ +KP
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 249 VKPYSCEICGRGFITKGLCKSHQKIHSGN 277
+KPY C C R F G + H +IH+G
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGE 29
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 28.1 bits (61), Expect = 6.8, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 197 ECNACGKGFQNKSYLIVHQRVHS 219
EC CGK F++ S LI HQ +H+
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHA 36
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDK 222
Y+C+ CG+ F + + + H H TDK
Sbjct: 4 YQCDYCGRSFSDPTSKMRHLETHDTDK 30
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 248 GVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYP 283
G KPYSC +CG F K H + H G+ + P
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGP 42
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+PYSC +C F + + H + H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVK 250
KP+ CKTC R F L H H G K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 295 SCNICGQSFTQFSPMAIHKRLHTGER 320
+ + CG+ FT+ + HKR HTGE+
Sbjct: 6 TWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EMB|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
342- 372) Of Human Zinc Finger Protein 473
Length = 44
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 193 RYEYECNACGKGFQNKSYLIVHQRVHST 220
R YEC+ C F + +LI HQ+ H+
Sbjct: 10 RKRYECSKCQATFNLRKHLIQHQKTHAA 37
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 320 RPYSCELCNKAFVSRSTLMVHKKKH 344
+PY CE C K FV S L H + H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>pdb|2CTU|A Chain A, Solution Structure Of Zinc Finger Domain From Human Zn
Finger Protein 483
Length = 73
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHK 341
+++H G+R C C F+ RSTL K
Sbjct: 9 RQKIHLGDRSQKCSKCGIIFIRRSTLSRRK 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,947,727
Number of Sequences: 62578
Number of extensions: 475279
Number of successful extensions: 2239
Number of sequences better than 100.0: 193
Number of HSP's better than 100.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 1160
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)