RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14386
(344 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 167 bits (425), Expect = 5e-51
Identities = 69/179 (38%), Positives = 96/179 (53%), Gaps = 14/179 (7%)
Query: 166 KPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYA 225
KP+ C +C K F L EH+ HTG Y+C CGK F +K L HQR H+ +KPY
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 226 CKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCP 285
C C +SF + L H+ H G KPY+C CG+ F ++HQ+ H+G
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG--------- 130
Query: 286 VCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+K + C CG+SF++ + H+R HTGE+PY C C K+F R L VH++ H
Sbjct: 131 --EKPYK---CPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 152 bits (388), Expect = 1e-45
Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 14/168 (8%)
Query: 177 FRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTK 236
A G Y C CGK F +L HQR H+ +KPY C C +SF K
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 237 QTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSC 296
+ L H+ H G KPY C CG+ F + ++HQ+ H+G +K + C
Sbjct: 63 KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTG-----------EKPYA---C 108
Query: 297 NICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
CG+SF+Q + + H+R HTGE+PY C C K+F L H++ H
Sbjct: 109 PECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH 156
Score = 147 bits (374), Expect = 1e-43
Identities = 67/194 (34%), Positives = 97/194 (50%), Gaps = 20/194 (10%)
Query: 129 IDTG-KPESKSLHKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHE 187
++ G KP + C C K FS H H +KP++C +C K F K L H+
Sbjct: 15 LEPGEKP-----YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69
Query: 188 AKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHM 247
HTG Y+C CGK F ++ L HQR H+ +KPYAC C +SF L H+ H
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Query: 248 GVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFS 307
G KPY C CG+ F + +HQ+ H+G +K + C CG+SF++
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTG-----------EKPYK---CPECGKSFSRRD 175
Query: 308 PMAIHKRLHTGERP 321
+ +H+R HTG++
Sbjct: 176 ALNVHQRTHTGKKT 189
Score = 55.1 bits (134), Expect = 3e-09
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 302 SFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
S S L GE+PY+C C K+F L H++ H
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTH 44
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 141 bits (359), Expect = 2e-41
Identities = 46/167 (27%), Positives = 67/167 (40%), Gaps = 18/167 (10%)
Query: 186 HEAKHTGRYEYECNA--CGKGFQNKSYLIVHQRVHSTDKPYACK--TCPRSFKTKQTLLD 241
+A Y C+ CG + L H H+ +KP+ CK C + F + L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 242 HENRHMGVKPYSCE--ICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNIC 299
H H G K ++C+ C F TK K H Y C C
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFEN----------C 112
Query: 300 GQSFTQFSPMAIHKRLHTGERPYSC--ELCNKAFVSRSTLMVHKKKH 344
G++F + + + +H+ HT + PY C E C+K F S L H+K H
Sbjct: 113 GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 139 bits (352), Expect = 3e-40
Identities = 48/196 (24%), Positives = 73/196 (37%), Gaps = 22/196 (11%)
Query: 158 HVSNHGVDKPFQC--FKCEKRFRSKLGLDEHEAKHTGRYEYECN--ACGKGFQNKSYLIV 213
+ V K + C C + L H KHTG + C C KGF + +L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 214 HQRVHSTDKPYACK--TCPRSFKTKQTLLDHENRHMGVK--PYSCEI--CGRGFITKGLC 267
H H+ +K + C C F TK + H NR +K Y C CG+ F
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQL 122
Query: 268 KSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCELC 327
K HQ H+ Y CP C + F+ S + H+++H G + C
Sbjct: 123 KVHQFSHTQQ--LPYECPHEG----------CDKRFSLPSRLKRHEKVHAGYPCKKDDSC 170
Query: 328 NKAFVSRSTLMVHKKK 343
+ + + + H +
Sbjct: 171 SFVGKTWTLYLKHVAE 186
Score = 101 bits (254), Expect = 5e-26
Identities = 33/141 (23%), Positives = 50/141 (35%), Gaps = 20/141 (14%)
Query: 212 IVHQRVHSTDKPYACKT--CPRSFKTKQTLLDHENRHMGVKPYSCE--ICGRGFITKGLC 267
+ + + K Y C C ++ L H +H G KP+ C+ C +GF +
Sbjct: 1 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL 60
Query: 268 KSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGER--PYSCE 325
H H+G + + C C FT + M H + Y C
Sbjct: 61 TRHSLTHTG--EKNFTCDSDG----------CDLRFTTKANMKKHFNRFHNIKICVYVCH 108
Query: 326 L--CNKAFVSRSTLMVHKKKH 344
C KAF + L VH+ H
Sbjct: 109 FENCGKAFKKHNQLKVHQFSH 129
Score = 94.2 bits (235), Expect = 3e-23
Identities = 41/145 (28%), Positives = 55/145 (37%), Gaps = 11/145 (7%)
Query: 141 KCD--RCPKKFSSLAKYNFHVSNHGVDKPFQC--FKCEKRFRSKLGLDEHEAKHTG--RY 194
C C K F+SL H H +K F C C+ RF +K + +H +
Sbjct: 44 PCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKIC 103
Query: 195 EYECNA--CGKGFQNKSYLIVHQRVHSTDKPYACK--TCPRSFKTKQTLLDHENRHMGVK 250
Y C+ CGK F+ + L VHQ H+ PY C C + F L HE H G
Sbjct: 104 VYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 163
Query: 251 PYSCEICGRGFITK-GLCKSHQKIH 274
+ C T K + H
Sbjct: 164 CKKDDSCSFVGKTWTLYLKHVAECH 188
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 112 bits (282), Expect = 8e-31
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 190 HTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENR---H 246
+G EC C K F +K YL VH R H+ +KP+ C C + + K+ LL+HE R +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 247 MGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQF 306
+ ++C +C F + + H H+G + + C+ C Q F Q
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTG-----------EMPY---KCSSCSQQFMQK 107
Query: 307 SPMAIHK-RLHTGER 320
+ H +LH+G
Sbjct: 108 KDLQSHMIKLHSGPS 122
Score = 95.3 bits (238), Expect = 2e-24
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 141 KCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAK---HTGRYEYE 197
+C C KKF S H H +KPF+C KC K + K L EHEA+ + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 198 CNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENR-HMGVK 250
C+ C + F+ + L +H H+ + PY C +C + F K+ L H + H G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 79.9 bits (198), Expect = 1e-18
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 17/102 (16%)
Query: 246 HMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQ 305
G C C + F++K K H + H+G +K F C CG+ + +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTG-----------EKPF---ECPKCGKCYFR 47
Query: 306 FSPMAIHKRL---HTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ H+ + E+ ++C +C + F R L +H H
Sbjct: 48 KENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSH 89
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 113 bits (284), Expect = 9e-31
Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 25/162 (15%)
Query: 196 YECNACGKGFQNKSYLIVH---QRVHSTDKPYACKTC-----PRSFKTKQTLLDHENRHM 247
+ C + F ++ L+ H + +H K + C R FK + L+ H RH
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 248 GVKPYSCEI--CGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQ 305
G KP+ C C + + K+H + H+G + Y C C ++F+
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE--KPYMCEHEG----------CSKAFSN 111
Query: 306 FSPMAIHK-RLHTGERPYSCEL--CNKAFVSRSTLMVHKKKH 344
S A H+ R H+ E+PY C+L C K + S+L H K
Sbjct: 112 ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 81.1 bits (201), Expect = 9e-19
Identities = 32/140 (22%), Positives = 49/140 (35%), Gaps = 31/140 (22%)
Query: 142 CDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNAC 201
C R + F + H+ H +KP +C C
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEG--------------------------C 75
Query: 202 GKGFQNKSYLIVHQRVHSTDKPYACK--TCPRSFKTKQTLLDHENR-HMGVKPYSCEI-- 256
K + L H R H+ +KPY C+ C ++F H+NR H KPY C++
Sbjct: 76 RKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPG 135
Query: 257 CGRGFITKGLCKSHQKIHSG 276
C + + + H K G
Sbjct: 136 CTKRYTDPSSLRKHVKTVHG 155
Score = 31.4 bits (72), Expect = 0.21
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
E + C++ F S+ L+ H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSE 26
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 113 bits (284), Expect = 1e-30
Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 23/155 (14%)
Query: 201 CGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS------- 253
G Q + + + K+C R+F T L+ H P
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 254 --CEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAI 311
C G+ F K +H ++H+G + +PCP CG+ F + + I
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGE--KPFPCPFPG----------CGKIFARSENLKI 110
Query: 312 HKRLHTGERPYSCEL--CNKAFVSRSTLMVHKKKH 344
HKR HTGE+P+ CE C++ F + S H H
Sbjct: 111 HKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 111 bits (280), Expect = 4e-30
Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 23/164 (14%)
Query: 172 KCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYA------ 225
+ + + +C + F L+ H + P
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 226 ---CKTCPRSFKTKQTLLDHENRHMGVKPYSCEI--CGRGFITKGLCKSHQKIHSGNDNR 280
C +SFK K L++H H G KP+ C CG+ F K H++ H+G +
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTG--EK 119
Query: 281 QYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
+ C C + F S H +HT ++
Sbjct: 120 PFKCEF----------EGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 74.6 bits (184), Expect = 2e-16
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 129 IDTG-KPESKSL----HKCDRCPKKFSSLAKYNFHVSNHGVDKPFQC--FKCEKRFRSKL 181
++ PE + +C R K F + K H+ H +KPF C C K F
Sbjct: 47 MEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSE 106
Query: 182 GLDEHEAKHTGRYEYEC--NACGKGFQNKSYLIVHQRVHSTDKPYAC 226
L H+ HTG ++C C + F N S H VH++DK
Sbjct: 107 NLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 36.1 bits (84), Expect = 0.006
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 140 HKCDR--CPKKFSSLAKYNFHVSNHGVDKPFQCFK--CEKRFRSKLGLDEHEAKHTGRYE 195
C C K F+ H H +KPF+C C++RF + +H HT
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Query: 196 YECNA 200
+
Sbjct: 151 GPSSG 155
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 106 bits (267), Expect = 9e-29
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 14/117 (11%)
Query: 208 KSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLC 267
S + T K + CK C R F LL HE H +PY+C+IC + F +
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 268 KSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
+ H+ IHS +K F C CG+ F Q +A+HK LH +
Sbjct: 62 RDHRYIHSK-----------EKPFK---CQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 95.6 bits (239), Expect = 1e-24
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 150 SSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKS 209
S + K F C C + F L HE HT Y C+ C K F+ +
Sbjct: 3 SGSSG---GRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQD 59
Query: 210 YLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+L H+ +HS +KP+ C+ C + F +TL H+ HM +
Sbjct: 60 HLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 52.8 bits (128), Expect = 4e-09
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 307 SPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
S + + ++ + C+ C + F L++H++ H
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTH 40
Score = 40.9 bits (97), Expect = 5e-05
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 129 IDTG-KPESKSLHKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHE 187
T +P + CD C K F H H +KPF+C +C K F L H+
Sbjct: 39 THTDERP-----YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK 93
Query: 188 AKHTGRYEYECNA 200
H +
Sbjct: 94 TLHMQTSSPTAAS 106
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 101 bits (255), Expect = 5e-27
Identities = 33/148 (22%), Positives = 47/148 (31%), Gaps = 45/148 (30%)
Query: 190 HTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGV 249
+G Y C CGK F +KS H +H +PY C C + FK K L+ H H G+
Sbjct: 5 SSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPM 309
KPY CNIC + F
Sbjct: 64 KPY------------------------------------------ECNICAKRFMWRD-- 79
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTL 337
+ H+ + + + Y + S
Sbjct: 80 SFHRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 97.5 bits (244), Expect = 2e-25
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 160 SNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHS 219
S DK + C +C K F K D H + H G Y C CGK F+ K +L+ H ++H+
Sbjct: 3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 220 TDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGF 261
KPY C C + F + + H + K Y +
Sbjct: 62 GIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNT 101
Score = 80.6 bits (200), Expect = 4e-19
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 246 HMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQ 305
G K Y C+ CG+ F K H +H G R Y C +CG+ F
Sbjct: 5 SSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGL--RPY------------GCGVCGKKFKM 49
Query: 306 FSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ H ++HTG +PY C +C K F+ R + H+
Sbjct: 50 KHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVT 86
Score = 79.0 bits (196), Expect = 1e-18
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 141 KCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
C C K F+ ++ + H+S H +P+ C C K+F+ K L H HTG YECN
Sbjct: 12 PCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI 70
Query: 201 CGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTL 239
C K F + H+ V S K Y ++
Sbjct: 71 CAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGP 107
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 101 bits (254), Expect = 1e-26
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 17/131 (12%)
Query: 196 YEC--NACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
C C K F++ S + H H + + C C ++F L H+ H G KP+
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64
Query: 254 CEI--CGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAI 311
C CG+ F ++H +IH+G+ R Y CP + C + F Q + +
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRIHTGD--RPYVCPF----------DGCNKKFAQSTNLKS 112
Query: 312 HKRLHTGERPY 322
H H +
Sbjct: 113 HILTHAKAKNN 123
Score = 92.2 bits (230), Expect = 3e-23
Identities = 37/117 (31%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 166 KPFQCFK--CEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKP 223
+ C C K FR + +H H G + C CGK F S L HQ VH+ +KP
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 224 YACKT--CPRSFKTKQTLLDHENRHMGVKPYSCEI--CGRGFITKGLCKSHQKIHSG 276
+ C C + F L H H G +PY C C + F KSH H+
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 71.0 bits (175), Expect = 2e-15
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 19/102 (18%)
Query: 247 MGVKPYSCEI--CGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFT 304
M + +C C + F + H H ++ V C CG++F
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHLHTHG------------PRVHV---CAECGKAFV 45
Query: 305 QFSPMAIHKRLHTGERPYSCEL--CNKAFVSRSTLMVHKKKH 344
+ S + H+ +HTGE+P+ C C K F L H + H
Sbjct: 46 ESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 68.7 bits (169), Expect = 1e-14
Identities = 31/89 (34%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 140 HKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFK--CEKRFRSKLGLDEHEAKHTGRYEYE 197
H C C K F +K H H +KPFQC C KRF L H HTG Y
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 198 C--NACGKGFQNKSYLIVHQRVHSTDKPY 224
C + C K F + L H H+ K
Sbjct: 95 CPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 101 bits (253), Expect = 1e-26
Identities = 41/115 (35%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 166 KPFQC--FKCEKRFRSKLGLDEHEAKHTGRYEYECNA--CGKGFQNKSYLIVHQRVHSTD 221
+PF C C KR+ L H KHTG Y+C+ C + F L HQR H+
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEI--CGRGFITKGLCKSHQKIH 274
KP+ CKTC R F L H H G KP+SC C + F H +H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 97.6 bits (244), Expect = 2e-25
Identities = 42/160 (26%), Positives = 59/160 (36%), Gaps = 48/160 (30%)
Query: 191 TGRYEYECN--ACGKGFQNKSYLIVHQRVHSTDKPYACKT--CPRSFKTKQTLLDHENRH 246
+ + + C C K + S+L +H R H+ +KPY C C R F L H+ RH
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 247 MGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQF 306
GVKP+ C+ C R F++
Sbjct: 62 TGVKPFQCKTCQR------------------------------------------KFSRS 79
Query: 307 SPMAIHKRLHTGERPYSCEL--CNKAFVSRSTLMVHKKKH 344
+ H R HTGE+P+SC C K F L+ H H
Sbjct: 80 DHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 60.2 bits (147), Expect = 1e-11
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 131 TG-KPESKSLHKCDR--CPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHE 187
TG KP ++CD C ++FS + H H KPFQC C+++F L H
Sbjct: 32 TGEKP-----YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT 86
Query: 188 AKHTGRYEYECNA--CGKGFQNKSYLIVHQRVH 218
HTG + C C K F L+ H +H
Sbjct: 87 RTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 98.7 bits (247), Expect = 5e-26
Identities = 31/135 (22%), Positives = 43/135 (31%), Gaps = 42/135 (31%)
Query: 190 HTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGV 249
++C CGK F K L H R H+ KPY CKTC + +L H H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPM 309
+P+ C+IC + S +
Sbjct: 63 RPFKCQICPY------------------------------------------ASRNSSQL 80
Query: 310 AIHKRLHTGERPYSC 324
+H R HTG+ S
Sbjct: 81 TVHLRSHTGDSGPSS 95
Score = 94.8 bits (237), Expect = 1e-24
Identities = 30/93 (32%), Positives = 40/93 (43%)
Query: 162 HGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
G P +C C K F K L H HTG Y+C C + S L H R+HS +
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+P+ C+ CP + + L H H G S
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 88.3 bits (220), Expect = 4e-22
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 246 HMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQ 305
P+ CE+CG+ F K K+H + H+G K + C C +
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTG-----------VKPY---KCKTCDYAAAD 48
Query: 306 FSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
S + H R+H+ ERP+ C++C A + S L VH + H
Sbjct: 49 SSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 81.3 bits (202), Expect = 1e-19
Identities = 27/87 (31%), Positives = 40/87 (45%)
Query: 140 HKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECN 199
HKC+ C K FS K H+ H KP++C C+ L++H H+ ++C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 200 ACGKGFQNKSYLIVHQRVHSTDKPYAC 226
C +N S L VH R H+ D +
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGDSGPSS 95
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 91.3 bits (228), Expect = 2e-23
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
++C CGK F+ S L H +HS +PY C+ C + F K + H H G KP+ C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 256 ICGRGFITKGLCKSHQKIHSG 276
+CG+ F +H + H+G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 82.1 bits (204), Expect = 5e-20
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
Query: 252 YSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAI 311
+ C+ICG+ F +H IHS R YPC CG+ F Q S M
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDT--RPYPC------------QYCGKRFHQKSDMKK 47
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
H +HTGE+P+ C++C KAF S L+ H +KH
Sbjct: 48 HTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 77.1 bits (191), Expect = 4e-18
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 168 FQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACK 227
F C C K F+ L H H+ Y C CGK F KS + H +H+ +KP+ C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 228 TCPRSFKTKQTLLDHENRHMG 248
C ++F L+ H +H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 67.4 bits (166), Expect = 1e-14
Identities = 28/78 (35%), Positives = 37/78 (47%)
Query: 141 KCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
C C K F + + H+ H +P+ C C KRF K + +H HTG ++C
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 201 CGKGFQNKSYLIVHQRVH 218
CGK F S LI H R H
Sbjct: 63 CGKAFSQSSNLITHSRKH 80
Score = 34.7 bits (81), Expect = 0.005
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 129 IDTG-KPESKSLHKCDRCPKKF---SSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLD 184
I + +P + C C K+F S + K H H +KP +C C K F L
Sbjct: 23 IHSDTRP-----YPCQYCGKRFHQKSDMKK---HTFIHTGEKPHKCQVCGKAFSQSSNLI 74
Query: 185 EHEAKHTG 192
H KHTG
Sbjct: 75 THSRKHTG 82
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 87.2 bits (217), Expect = 1e-21
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 190 HTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMG- 248
+G C CGK F++ +L H+ HS +KPY+C C FK K + H H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 249 -VKPYSCEICGRGFITKGLCKSH-QKIHSG 276
KPY C+ CG+GF H +++HSG
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 82.5 bits (205), Expect = 5e-20
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 16/100 (16%)
Query: 246 HMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQ 305
G +CEICG+ F H+ HSG +K + SC +CG F +
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSG-----------EKPY---SCPVCGLRFKR 47
Query: 306 FSPMAIHKRLHTGE--RPYSCELCNKAFVSRSTLMVHKKK 343
M+ H R H G +PY C+ C K F L H K+
Sbjct: 48 KDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 79.1 bits (196), Expect = 1e-18
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 166 KPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHS--TDKP 223
C C K FR L+ H+ H+G Y C CG F+ K + H R H KP
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65
Query: 224 YACKTCPRSFKTKQTLLDHENR-HMGVK 250
Y C++C + F L H + H G
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 69.4 bits (171), Expect = 3e-15
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
C ICG+ F + HK H+GE+PYSC +C F + + H + H
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 65.6 bits (161), Expect = 8e-14
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 140 HKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYE--YE 197
C+ C K F + N H +H +KP+ C C RF+ K + H H G Y
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 198 CNACGKGFQNKSYLIVH-QRVHSTDK 222
C +CGKGF +L H ++VHS
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 43.6 bits (104), Expect = 4e-06
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 316 HTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+G +CE+C K F L HK H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSH 30
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 83.7 bits (208), Expect = 1e-20
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 183 LDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVH----STDKPYACKTCPRSFKTKQT 238
HTG Y C+ C K F+ K L +H + + + C C ++F + T
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 239 LLDHENRHMGVKPYSCEICGRGF 261
+ H + G E G
Sbjct: 63 MARHADNCAGPDGVEGENSGPSS 85
Score = 82.2 bits (204), Expect = 6e-20
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 10/94 (10%)
Query: 238 TLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCN 297
+ H G KPY+C C + F K L H K + + C+
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA----------FVCS 51
Query: 298 ICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAF 331
CG++FT+ + MA H G E +
Sbjct: 52 KCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 79.5 bits (197), Expect = 5e-19
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 166 KPFQCFKCEKRFRSKLGLDEHEAKHTGRYE----YECNACGKGFQNKSYLIVHQRVHSTD 221
KP+ C C+K FR K LD H ++ + C+ CGK F ++ + H +
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP 73
Query: 222 KPYACKTCPRSF 233
+ S
Sbjct: 74 DGVEGENSGPSS 85
Score = 60.2 bits (147), Expect = 5e-12
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 18/80 (22%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGE----RPYSC 324
S + H+G +K + +C+ C ++F Q + +H + + + C
Sbjct: 5 SSGRTHTG-----------EKPY---ACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVC 50
Query: 325 ELCNKAFVSRSTLMVHKKKH 344
C K F R+T+ H
Sbjct: 51 SKCGKTFTRRNTMARHADNC 70
Score = 54.1 bits (131), Expect = 7e-10
Identities = 20/82 (24%), Positives = 25/82 (30%), Gaps = 10/82 (12%)
Query: 129 IDTG-KPESKSLHKCDRCPKKFSSLAKYNFHVSNH----GVDKPFQCFKCEKRFRSKLGL 183
TG KP + C C K F + H + V F C KC K F + +
Sbjct: 9 THTGEKP-----YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM 63
Query: 184 DEHEAKHTGRYEYECNACGKGF 205
H G E G
Sbjct: 64 ARHADNCAGPDGVEGENSGPSS 85
Score = 51.0 bits (123), Expect = 8e-09
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
R HTGE+PY+C C+K F + L +H K++
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 38
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 84.1 bits (209), Expect = 1e-20
Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 196 YECNA--CGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
Y C C + F L H R+H+ KP+ C+ C R+F L H H G KP++
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 254 CEICGRGFITKGLCKSHQKIHSG 276
C+ICGR F K H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIHLR 87
Score = 80.6 bits (200), Expect = 2e-19
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Query: 250 KPYSCEI--CGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFS 307
+PY+C + C R F G H +IH+G +K F C IC ++F++
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTG-----------QKPF---QCRICMRNFSRSD 48
Query: 308 PMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ H R HTGE+P++C++C + F H K H
Sbjct: 49 HLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 74.4 bits (184), Expect = 5e-17
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 164 VDKPFQCFK--CEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
+++P+ C C++RF L H HTG+ ++C C + F +L H R H+ +
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVK 250
KP+AC C R F H H+ K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 73.3 bits (181), Expect = 9e-17
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query: 222 KPYACKT--CPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDN 279
+PYAC C R F +L H H G KP+ C IC R F +H + H+G
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG--- 59
Query: 280 RQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGER 320
+K F +C+ICG+ F + H ++H ++
Sbjct: 60 --------EKPF---ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 63.6 bits (156), Expect = 3e-13
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 140 HKCDR--CPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYE 197
+ C C ++FS H+ H KPFQC C + F L H HTG +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 198 CNACGKGFQNKSYLIVHQRVHSTDK 222
C+ CG+ F H ++H K
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 83.7 bits (208), Expect = 1e-20
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 189 KHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACK--TCPRSFKTKQTLLDHENRH 246
K T + + CGK + S+L H R H+ +KPY C C F L H +H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 247 MGVKPYSCEICGRGFITKGLCKSHQKIH 274
G +P+ C+ C R F H K H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 77.6 bits (192), Expect = 3e-18
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 245 RHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFT 304
+ CG+ + K+H + H+G + Y C + CG F
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGE--KPYHC----------DWDGCGWKFA 48
Query: 305 QFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ + H R HTG RP+ C+ C++AF L +H K+H
Sbjct: 49 RSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 66.8 bits (164), Expect = 2e-14
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 166 KPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECN--ACGKGFQNKSYLIVHQRVHSTDKP 223
C K + L H HTG Y C+ CG F L H R H+ +P
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 224 YACKTCPRSFKTKQTLLDHENRHM 247
+ C+ C R+F L H RH
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRHF 89
Score = 30.2 bits (69), Expect = 0.23
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 145 CPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRF-RSKLGLDEHEAKH 190
C KF+ + H H +PFQC KC++ F RS +H A H
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRS-----DHLALH 84
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 81.4 bits (202), Expect = 6e-20
Identities = 25/71 (35%), Positives = 34/71 (47%)
Query: 182 GLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLD 241
G H+G Y C CGK F S L+ HQRVH+ +KPY C C ++F L++
Sbjct: 1 GSSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 242 HENRHMGVKPY 252
H+ H
Sbjct: 61 HQRIHTSGPSS 71
Score = 72.5 bits (179), Expect = 1e-16
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 162 HGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
H +KP+ C +C K F L +H+ HTG Y+C CGK F S LI HQR+H++
Sbjct: 9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Query: 222 KPYA 225
Sbjct: 69 PSSG 72
Score = 70.2 bits (173), Expect = 8e-16
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 211 LIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSH 270
+HS +KPY C C ++F L+ H+ H G KPY C CG+ F +H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 271 QKIHSG 276
Q+IH+
Sbjct: 62 QRIHTS 67
Score = 68.7 bits (169), Expect = 4e-15
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 14/75 (18%)
Query: 270 HQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCELCNK 329
IHSG + Y C CG++F++ S + H+R+HTGE+PY C C K
Sbjct: 5 SSGIHSGE--KPY------------GCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGK 50
Query: 330 AFVSRSTLMVHKKKH 344
AF S L+ H++ H
Sbjct: 51 AFSQNSGLINHQRIH 65
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 78.3 bits (194), Expect = 1e-18
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 183 LDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDH 242
E + R Y+C+ CGK F + S L H+R H+ +KPY C C ++F + L+ H
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Query: 243 ENRHMGVKPY 252
H G P
Sbjct: 66 HRVHTGSGPS 75
Score = 70.5 bits (174), Expect = 6e-16
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 14/75 (18%)
Query: 270 HQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCELCNK 329
+ R+Y C+ CG+SF+ S ++ H+R HTGE+PY C+ C K
Sbjct: 9 SEWQQRER--RRY------------KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGK 54
Query: 330 AFVSRSTLMVHKKKH 344
AF+ RS L+ H + H
Sbjct: 55 AFIQRSHLIGHHRVH 69
Score = 70.5 bits (174), Expect = 7e-16
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 150 SSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKS 209
S + + ++C +C K F L +H HTG Y+C+ CGK F +S
Sbjct: 4 GSSGR---SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS 60
Query: 210 YLIVHQRVHSTDKPY 224
+LI H RVH+ P
Sbjct: 61 HLIGHHRVHTGSGPS 75
Score = 70.2 bits (173), Expect = 1e-15
Identities = 20/69 (28%), Positives = 29/69 (42%)
Query: 208 KSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLC 267
+ + Y C C +SF L H H G KPY C+ CG+ FI +
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 268 KSHQKIHSG 276
H ++H+G
Sbjct: 63 IGHHRVHTG 71
Score = 52.4 bits (127), Expect = 2e-09
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 300 GQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
G S + R Y C+ C K+F S L H++ H
Sbjct: 1 GSS----GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 41
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 76.9 bits (190), Expect = 7e-18
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 177 FRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC--KTCPRSFK 234
S E H Y C K + S+L H R H+ +KPY C + C F
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58
Query: 235 TKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIH 274
L H +H G KP+ C +C R F H K H
Sbjct: 59 RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 72.7 bits (179), Expect = 3e-16
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 16/113 (14%)
Query: 232 SFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLF 291
S + L+ H P C + + K+H + H+G + Y C
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGE--KPYKC------- 48
Query: 292 VSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ C F + + H R HTG +P+ C +CN++F L +H K+H
Sbjct: 49 ---TWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 60.3 bits (147), Expect = 6e-12
Identities = 27/85 (31%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 166 KPFQCFK--CEKRFRSKLGLDEHEAKHTGRYEYECN--ACGKGFQNKSYLIVHQRVHSTD 221
+ C C K + L H HTG Y+C C F L H R H+
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 222 KPYACKTCPRSFKTKQTLLDHENRH 246
KP+ C C RSF L H RH
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 33.8 bits (78), Expect = 0.015
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 145 CPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHT 191
C +F+ + H H KPFQC C + F L H +H
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 76.4 bits (189), Expect = 9e-18
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 15/94 (15%)
Query: 249 VKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSP 308
+KP+ C IC R F +H + H+G +K F +C+ICG+ F +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTG-----------EKPF---ACDICGRKFARSDE 46
Query: 309 MAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKK 342
H+ + P + + L
Sbjct: 47 RKRHRDIQH-ILPILEDKVEELLSKNYHLENEVA 79
Score = 75.2 bits (186), Expect = 2e-17
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
++C C + F +L H R H+ +KP+AC C R F H + + P +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILED 62
Query: 256 ICGRGFITKG---LCKSHQKIHSG 276
+ K G
Sbjct: 63 KVEELLSKNYHLENEVARLKKLVG 86
Score = 74.5 bits (184), Expect = 4e-17
Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 166 KPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYA 225
KPFQC C + F L H HTG + C+ CG+ F H+ + P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPIL 60
Query: 226 CKTCPRSFKTKQTLLDHENRHM 247
L + +
Sbjct: 61 EDKVEELLSKNYHLENE-VARL 81
Score = 70.2 bits (173), Expect = 1e-15
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 18/102 (17%)
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQ 281
KP+ C+ C R+F L H H G KP++C+ICGR F K H+ I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI----- 56
Query: 282 YPCPVCKKLFVSKSCNICGQSFTQFSPMAIHK---RLHTGER 320
+ + ++ + + GER
Sbjct: 57 -------LPI---LEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 65.2 bits (160), Expect = 7e-14
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
C IC ++F++ + H R HTGE+P++C++C + F H+
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 37.9 bits (89), Expect = 4e-04
Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 10/66 (15%)
Query: 131 TG-KPESKSLHKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEA- 188
TG KP CD C +KF+ + H P K E+ L+ A
Sbjct: 27 TGEKP-----FACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVAR 80
Query: 189 --KHTG 192
K G
Sbjct: 81 LKKLVG 86
Score = 29.8 bits (68), Expect = 0.25
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 320 RPYSCELCNKAFVSRSTLMVHKKKH 344
+P+ C +C + F L H + H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 75.2 bits (186), Expect = 1e-17
Identities = 23/70 (32%), Positives = 29/70 (41%)
Query: 183 LDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDH 242
H Y+C+ C F+ K L H+ VH+ +KPY C C F L H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 243 ENRHMGVKPY 252
H G KPY
Sbjct: 65 TRIHSGEKPY 74
Score = 74.8 bits (185), Expect = 2e-17
Identities = 28/68 (41%), Positives = 35/68 (51%)
Query: 209 SYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCK 268
+ H + +DKPY C C SF+ K L H+ H G KPY C ICG F K
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 269 SHQKIHSG 276
+H +IHSG
Sbjct: 63 THTRIHSG 70
Score = 69.8 bits (172), Expect = 1e-15
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 14/76 (18%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCELCN 328
H + K + C+ C SF +A HK +HTGE+PY C +C
Sbjct: 7 HHSHMTHS-----------DKPY---KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICG 52
Query: 329 KAFVSRSTLMVHKKKH 344
F + L H + H
Sbjct: 53 AQFNRPANLKTHTRIH 68
Score = 69.4 bits (171), Expect = 2e-15
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 162 HGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
DKP++C +C+ FR K L H+ HTG Y CN CG F + L H R+HS +
Sbjct: 12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Query: 222 KPY 224
KPY
Sbjct: 72 KPY 74
Score = 52.1 bits (126), Expect = 3e-09
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 307 SPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
H + ++PY C+ C +F + L HK H
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVH 40
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 75.7 bits (187), Expect = 1e-17
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 190 HTGRYEYECNA--CGKGFQNKSYLIVHQRV-HSTDKPYACK--TCPRSFKTKQTLLDHEN 244
+G C+ CG+ F N+ YL H++ H K ++C C +SF K+ L +H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 245 RHMGVKPYSCEICGRGF 261
H + Y CE G
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 69.5 bits (171), Expect = 2e-15
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 15/89 (16%)
Query: 246 HMGVKPYSCEI--CGRGFITKGLCKSHQKI-HSGNDNRQYPCPVCKKLFVSKSCNICGQS 302
G C+ CGR F + H+K H + + CP CG+S
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQ--KSFSCPEPA----------CGKS 49
Query: 303 FTQFSPMAIHKRLHTGERPYSCELCNKAF 331
F + H +LH+ R Y CE +
Sbjct: 50 FNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 69.5 bits (171), Expect = 2e-15
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 166 KPFQC--FKCEKRFRSKLGLDEHE-AKHTGRYEYECN--ACGKGFQNKSYLIVHQRVHST 220
C C + F ++ L+ H+ +H + + C ACGK F K +L H ++HS
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 221 DKPYACKTCPRSF 233
+ Y C+ S
Sbjct: 66 TRDYICEFSGPSS 78
Score = 55.6 bits (135), Expect = 2e-10
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 299 CGQSFTQFSPMAIHKRL-HTGERPYSCE--LCNKAFVSRSTLMVHKKKH 344
CG+ F+ + HK+ H ++ +SC C K+F + L H K H
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Score = 27.9 bits (63), Expect = 1.2
Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 2/40 (5%)
Query: 140 HKCD--RCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRF 177
C C K F+ H+ H + + C
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 71.8 bits (177), Expect = 2e-16
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 188 AKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHM 247
+ + + +C+ C +K+ L +H+R+H TD+P+ C C K L H +
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 248 GVKPYSC 254
G
Sbjct: 62 GDMSGPS 68
Score = 66.4 bits (163), Expect = 2e-14
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
C+ C S + + + IH+R+H +RP+ C C+ S L H KK
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 66.0 bits (162), Expect = 3e-14
Identities = 16/65 (24%), Positives = 22/65 (33%)
Query: 162 HGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTD 221
P +C +C SK L HE H ++CN C + S L H + D
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Query: 222 KPYAC 226
Sbjct: 64 MSGPS 68
Score = 61.0 bits (149), Expect = 2e-12
Identities = 16/61 (26%), Positives = 20/61 (32%)
Query: 216 RVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHS 275
S+ P C C S +K L HE H +P+ C C H K
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 276 G 276
G
Sbjct: 62 G 62
Score = 56.4 bits (137), Expect = 8e-11
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 14/79 (17%)
Query: 246 HMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQ 305
P C C +K + H++IH + R + CN C Q
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTD--RPF------------KCNYCSFDTKQ 49
Query: 306 FSPMAIHKRLHTGERPYSC 324
S ++ H + G+
Sbjct: 50 PSNLSKHMKKFHGDMSGPS 68
Score = 46.0 bits (110), Expect = 4e-07
Identities = 17/53 (32%), Positives = 21/53 (39%)
Query: 140 HKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
KC C SS A H H D+PF+C C + L +H K G
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 44.4 bits (106), Expect = 1e-06
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 314 RLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ P C C+ + S++ L +H++ H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIH 32
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 71.0 bits (175), Expect = 6e-16
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 13/87 (14%)
Query: 238 TLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCN 297
+ H G KPY C IC F G K H + ++ C
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKF------------HCP 49
Query: 298 ICGQSFTQFSPMAIH-KRLHTGERPYS 323
C + S + +H ++ H+ P S
Sbjct: 50 HCDTVIARKSDLGVHLRKQHSYSGPSS 76
Score = 66.0 bits (162), Expect = 3e-14
Identities = 16/74 (21%), Positives = 21/74 (28%), Gaps = 3/74 (4%)
Query: 183 LDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHS--TDKPYACKTCPRSFKTKQTLL 240
H+G YEC C F + +H + C C K L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 241 DHENR-HMGVKPYS 253
H + H P S
Sbjct: 63 VHLRKQHSYSGPSS 76
Score = 65.2 bits (160), Expect = 6e-14
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 16/79 (20%)
Query: 268 KSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGE--RPYSCE 325
S + HSG +K + C IC FTQ M +H E + C
Sbjct: 4 GSSGRTHSG-----------EKPY---ECYICHARFTQSGTMKMHILQKHTENVAKFHCP 49
Query: 326 LCNKAFVSRSTLMVHKKKH 344
C+ +S L VH +K
Sbjct: 50 HCDTVIARKSDLGVHLRKQ 68
Score = 63.3 bits (155), Expect = 3e-13
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 166 KPFQCFKCEKRFRSKLGLDEHEAKHTGRYE--YECNACGKGFQNKSYLIVHQR-VHSTDK 222
KP++C+ C RF + H + + C C KS L VH R HS
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG 73
Query: 223 PYA 225
P +
Sbjct: 74 PSS 76
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 65.6 bits (161), Expect = 3e-14
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKK 343
C +C ++F + + H R HT E+PY C LCN+AF R L+ H +K
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 61.3 bits (150), Expect = 1e-12
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENR-HMG 248
+ C C + F + +L H R H+ +KPY C C R+F + L+ H + H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 56.0 bits (136), Expect = 8e-11
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 166 KPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVH-QRVHS 219
+ F C C + F + L H HT Y C C + F + LI H Q++HS
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 50.6 bits (122), Expect = 6e-09
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 15/71 (21%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPM 309
+ + CE+C R F + K H + H+ +K + C +C ++FT+ +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN-----------EKPYP---CGLCNRAFTRRDLL 46
Query: 310 AIH-KRLHTGE 319
H +++H+G
Sbjct: 47 IRHAQKIHSGN 57
Score = 30.9 bits (71), Expect = 0.055
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 320 RPYSCELCNKAFVSRSTLMVHKKKH 344
R + CE+C +AF + L H + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 65.9 bits (161), Expect = 4e-14
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 166 KPFQCFKCEKRFRSKLGLDEHEAKHT---GRYEYECNACGKGFQNKSYLIVHQRVHSTDK 222
QC C R K L+ H+ KH + C CGK F+ + H+
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 223 PYACKTCP 230
A +
Sbjct: 66 LLAPQESS 73
Score = 63.6 bits (155), Expect = 3e-13
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 295 SCNICGQSFTQFSPMAIHKRLHT---GERPYSCELCNKAFVSRSTLMVHKKKH 344
C ICG + Q + + H+R H + CE C K F ++ H+ K
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 63.2 bits (154), Expect = 3e-13
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 190 HTGRYEYECNACGKGFQNKSYLIVHQRVHST---DKPYACKTCPRSFKTKQTLLDHENR- 245
+G +C CG + K+ L HQR H+ + C+ C + F+ ++ H ++
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 246 HMGVKPYSCEICG 258
H + E G
Sbjct: 62 HPALLLAPQESSG 74
Score = 59.0 bits (143), Expect = 1e-11
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 14/88 (15%)
Query: 246 HMGVKPYSCEICGRGFITKGLCKSHQKIHSGND-NRQYPCPVCKKLFVSKSCNICGQSFT 304
G CEICG K HQ+ H+ ++P C CG+ F
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFP------------CEFCGKRFE 49
Query: 305 QFSPMAIHKRL-HTGERPYSCELCNKAF 331
+ +A H+ H E +
Sbjct: 50 KPDSVAAHRSKSHPALLLAPQESSGPSS 77
Score = 47.0 bits (112), Expect = 2e-07
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 316 HTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+G CE+C +++L H++KH
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKH 30
Score = 46.6 bits (111), Expect = 3e-07
Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
Query: 140 HKCDRCPKKFSSLAKYNFHVSNH---GVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEY 196
+C+ C A N+H H F C C KRF + H +K
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 197 ECNACGK 203
Sbjct: 68 APQESSG 74
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 65.3 bits (160), Expect = 6e-14
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 194 YEYECNACGKGFQNKSYLIVHQRVHSTDKPYACK--TCPRSFKTKQTLLDHENRHMGVKP 251
Y CGK F+ + L VHQ H+ PY C C + F L HE H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 252 YSCEICGRGFITKG-LCKSHQKIH 274
+ C T K + H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 60.7 bits (148), Expect = 3e-12
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 173 CEKRFRSKLGLDEHEAKHTGRYEYECN--ACGKGFQNKSYLIVHQRVHSTDKPYACKTCP 230
C K F+ L H+ HT + YEC C K F S L H++VH+ +C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 231 RSFKTKQTLLDHENR 245
KT L H
Sbjct: 69 FVGKTWTLYLKHVAE 83
Score = 59.6 bits (145), Expect = 9e-12
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 253 SCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIH 312
E CG+ F K HQ H+ Y CP C + F+ S + H
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQ--LPYECPHEG----------CDKRFSLPSRLKRH 52
Query: 313 KRLHTGERPYSCELCNKAFVSRSTLMVHKKK 343
+++H G + C+ + + + H +
Sbjct: 53 EKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 83
Score = 58.4 bits (142), Expect = 2e-11
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 295 SCNICGQSFTQFSPMAIHKRLHTGERPYSC--ELCNKAFVSRSTLMVHKKKH 344
CG++F + + + +H+ HT + PY C E C+K F S L H+K H
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 27.2 bits (61), Expect = 2.5
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 140 HKCD--RCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRS 179
++C C K+FS ++ H H + C ++
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKT 73
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 64.5 bits (158), Expect = 8e-14
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 215 QRVHSTDKPYACKTCPRSFKTKQTLLDHE--NRHMGVKPYSCEICGRGFITKGLCKSHQK 272
+ + Y CK C R + H + VK Y C C + F K +H K
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 273 IHSG 276
I
Sbjct: 62 IIHK 65
Score = 61.8 bits (151), Expect = 7e-13
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 296 CNICGQSFTQFSPMAIHKR--LHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
C +C + +T S H + Y C C K F + + H K
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 56.0 bits (136), Expect = 1e-10
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHE--AKHTGRYEYECNACGKGFQNKSYLIVHQRVH 218
+ ++C C + + H + Y C C K F K + H ++
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 44.5 bits (106), Expect = 1e-06
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 313 KRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ GE Y C++C++ + S H
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTS 33
Score = 38.7 bits (91), Expect = 1e-04
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 140 HKCDRCPKKFSSLAKYNFH--VSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
++C C + ++ ++ + H S+ K + C C K F K + H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 62.9 bits (154), Expect = 2e-13
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y CN CGK F++KSYLI+H R H+ + +
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TG +PY C C KAF S+S L++H + H
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 49.8 bits (120), Expect = 8e-09
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ KPY C C ++F++K L+ H H G S
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G K +V CN CG++F S + IH R HTGE S
Sbjct: 2 SSGSSGTG-----------MKPYV---CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.6 bits (153), Expect = 2e-13
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ G Y C+ CGK F +KSYLI+H R HS +KP
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 49.9 bits (120), Expect = 8e-09
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G +K + C+ CG++F+ S + IH R H+GE+P
Sbjct: 2 SSGSSGAG-----------EKPY---GCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 49.9 bits (120), Expect = 8e-09
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
GE+PY C C KAF S+S L++H + H
Sbjct: 1 GSSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 49.9 bits (120), Expect = 9e-09
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY C C ++F +K L+ H H G KP
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 62.2 bits (152), Expect = 4e-13
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y C+ C K F KS LIVHQR H+ KP
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 50.2 bits (121), Expect = 7e-09
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ KPY C C ++F K L+ H+ H GVKP
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 49.8 bits (120), Expect = 9e-09
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G K + C+ C ++F+ S + +H+R HTG +P
Sbjct: 2 SSGSSGTG-----------VKPYG---CSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 49.5 bits (119), Expect = 1e-08
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TG +PY C C K F +S L+VH++ H
Sbjct: 1 GSSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ KP+ C +C K F K L H+ HTG ++
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 4e-13
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG +EC+ C K F KS LIVHQR H+ +KP
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 7e-09
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G +K F C+ C ++F S + +H+R HTGE+P
Sbjct: 2 SSGSSGTG-----------EKPFE---CSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 49.0 bits (118), Expect = 2e-08
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+P+ C C KAF ++S L+VH++ H
Sbjct: 1 GSSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 48.6 bits (117), Expect = 2e-08
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KP+ C C ++F TK L+ H+ H G KP
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 4e-13
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 185 EHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG YEC+ CGK F KS LI+HQR+H+ +KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 7e-09
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGER Y C C KAF +STL++H++ H
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 49.0 bits (118), Expect = 2e-08
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G R Y C+ CG++F + S + +H+R+HTGE+P
Sbjct: 2 SSGSSGTGE--RHY------------ECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 48.6 bits (117), Expect = 3e-08
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ ++ Y C C ++F K TL+ H+ H G KP
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 7e-04
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ ++ ++C +C K F K L H+ HTG ++
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 5e-13
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 185 EHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG YEC+ CGK F KS L +HQR+H +KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 49.8 bits (120), Expect = 8e-09
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGER Y C C KAF+ +STL +H++ H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 48.7 bits (117), Expect = 2e-08
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G R Y C+ CG++F Q S +++H+R+H GE+P
Sbjct: 2 SSGSSGTGE--RHY------------ECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 48.7 bits (117), Expect = 2e-08
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ ++ Y C C ++F K TL H+ H G KP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 39.4 bits (93), Expect = 4e-05
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G + Y C CG+ FI K HQ+IH G
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRG 37
Score = 36.0 bits (84), Expect = 7e-04
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ ++ ++C +C K F K L H+ H G ++
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 5e-13
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ TG YEC+ CGK F KS L VHQ++H+ +KP +
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 52.2 bits (126), Expect = 1e-09
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C +C K+F +S L VH++ H
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 50.2 bits (121), Expect = 7e-09
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G + Y C+ICG+SFT+ S + +H+++HTGE+P
Sbjct: 2 SSGSSGTGE--KPY------------ECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 213 VHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ +KPY C C +SF K L H+ H G KP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 7e-04
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C C K F K L H+ HTG ++
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 61.8 bits (151), Expect = 5e-13
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACK 227
+ TG+ YEC CGK F+ KS LI H+R H+ +KP
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 4e-09
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TG+RPY C C KAF ++S+L+ H++ H
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 49.5 bits (119), Expect = 1e-08
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ +PY C C ++FKTK +L+ H H G KP
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 49.1 bits (118), Expect = 2e-08
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G R Y C CG++F S + H+R HTGE+P
Sbjct: 2 SSGSSGTGQ--RPY------------ECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECN 199
S+ +P++C +C K F++K L H HTG +
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 6e-13
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG +C CGK F KS LI+HQR H DK
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 46.8 bits (112), Expect = 1e-07
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSC 324
C CG++F S + +H+R H ++
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 46.4 bits (111), Expect = 1e-07
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ +KP C C ++F K L+ H+ H+ K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+P C C KAF +S L++H++ H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 41.8 bits (99), Expect = 7e-06
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G KP C CG+ F K HQ+ H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVD 37
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP +C +C K F K L H+ H ++
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS 45
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 61.4 bits (150), Expect = 6e-13
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 190 HTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+G + C+ C K F +KSYL+VHQ+ H+ +KP +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 47.9 bits (115), Expect = 5e-08
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSC 324
C+ C ++F+ S + +H++ H E+P
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 44.8 bits (107), Expect = 5e-07
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 313 KRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+P+ C C KAF S+S L+VH++ H
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 42.1 bits (100), Expect = 4e-06
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 215 QRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
S +KP+ C C ++F +K LL H+ H KP
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 61.3 bits (150), Expect = 7e-13
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG YECN C K F KS L+VHQR H+ + +
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 53.6 bits (130), Expect = 4e-10
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C KAF ++S LMVH++ H
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 50.6 bits (122), Expect = 4e-09
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 213 VHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ +KPY C C ++F TK L+ H+ H G S
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 49.8 bits (120), Expect = 8e-09
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G + Y CN C ++F S + +H+R HTGE S
Sbjct: 2 SSGSSGTGE--KPY------------ECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 61.0 bits (149), Expect = 8e-13
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ +G YECN CGK F KS LIVH+R H+ +
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+PY C C KAF+ +S L+VH++ H
Sbjct: 1 GSSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 49.5 bits (119), Expect = 1e-08
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
S +KPY C C ++F K L+ HE H GV S
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 49.1 bits (118), Expect = 1e-08
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S SG +K + CN CG++F S + +H+R H G S
Sbjct: 2 SSGSSGSG-----------EKPYE---CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 8e-13
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ TG YEC+ CGK F ++ L VHQR+HS KP +
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 52.1 bits (126), Expect = 1e-09
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C +C KAF R +L VH++ H
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 49.4 bits (119), Expect = 1e-08
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 213 VHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY C C ++F +Q+L H+ H G KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G + Y C++CG++F+ +++H+R+H+G++P
Sbjct: 2 SSGSSGTGE--KPY------------ECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 35.9 bits (84), Expect = 7e-04
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C C K F + L H+ H+G+ ++
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 8e-13
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG YEC+ CGK F KS L VHQR+H+ + P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G + Y C+ CG+SF + S + +H+R+HTGE P
Sbjct: 2 SSGSSGTGE--KPY------------ECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 50.2 bits (121), Expect = 7e-09
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C K+F+ +S L VH++ H
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 49.1 bits (118), Expect = 2e-08
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 213 VHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ +KPY C C +SF K L H+ H G P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 36.0 bits (84), Expect = 8e-04
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C C K F K L H+ HTG ++
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 9e-13
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y+CN CGK F+ +S L +HQ HS +KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 51.0 bits (123), Expect = 4e-09
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C KAF +RS+L +H+ H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 49.1 bits (118), Expect = 1e-08
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G +K + CN CG++F S +AIH+ H+GE+P
Sbjct: 2 SSGSSGTG-----------EKPY---KCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 49.1 bits (118), Expect = 2e-08
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ +KPY C C ++F+ + +L H+ H G KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C +C K FR++ L H+A H+G ++
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS 45
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 9e-13
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ +G Y CN CGK F KS L HQR H+ +KP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 213 VHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
S +KPY C C ++F K L H+ H G KP
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 49.8 bits (120), Expect = 9e-09
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 311 IHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+PY C C K F +S L H++ H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 49.5 bits (119), Expect = 1e-08
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S SG +K + CN CG++F+Q S ++ H+R HTGE+P
Sbjct: 2 SSGSSGSG-----------EKPY---GCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 4e-04
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECN 199
S+ +KP+ C +C K F K L H+ HTG +
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 1e-12
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG +EC CGK F S LIVHQR+H+ + P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 49.1 bits (118), Expect = 2e-08
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G + P C CG+SF+ S + +H+R+HTGE P
Sbjct: 2 SSGSSGTG----EKPH----------ECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ +KP+ C+ C +SF L+ H+ H G P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 47.5 bits (114), Expect = 5e-08
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+P+ C C K+F S L+VH++ H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 36.0 bits (84), Expect = 7e-04
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP +C +C K F L H+ HTG ++
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 1e-12
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ TG YEC+ CGK F K LI HQR H+ +KP +
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 49.4 bits (119), Expect = 1e-08
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE PY C C KAF + L+ H++ H
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 49.4 bits (119), Expect = 1e-08
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 213 VHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ + PY C C ++F K L+ H+ H G KP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 47.5 bits (114), Expect = 6e-08
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G Y C+ CG++F++ + H+R H GE+P
Sbjct: 2 SSGSSGTGE--NPY------------ECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ + P++C +C K F K L H+ H G ++
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 61.0 bits (149), Expect = 1e-12
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACK 227
+ TG Y C CGK F+ S L+ HQRVHS +KP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 49.9 bits (120), Expect = 8e-09
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY CK C +SF+ LL H+ H G KP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 49.5 bits (119), Expect = 1e-08
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY+C+ C K+F S L+ H++ H
Sbjct: 1 GSSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 49.5 bits (119), Expect = 1e-08
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G + Y +C CG+SF S + H+R+H+GE+P
Sbjct: 2 SSGSSGTGE--KPY------------NCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 60.6 bits (148), Expect = 1e-12
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG YEC CGK F K L+ HQ+ HS +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 46.3 bits (111), Expect = 2e-07
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE PY C C K F + L+ H+K H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 45.6 bits (109), Expect = 2e-07
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSC 324
C CG+ F++ + H++ H+G+ S
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 45.2 bits (108), Expect = 3e-07
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ + PY C C + F K L+ H+ H G S
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G PY C CG+ F K SHQK HSG
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSG 37
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 1e-12
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACK 227
+ TG YEC C K F K++L HQ+ H+ +KP
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 49.8 bits (120), Expect = 1e-08
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C++C+KAF ++ L H+K H
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 49.1 bits (118), Expect = 2e-08
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY CK C ++F K L H+ H G KP
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 4e-08
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G + Y C +C ++FTQ + +A H++ HTGE+P
Sbjct: 2 SSGSSGTGE--KPY------------ECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 60.6 bits (148), Expect = 1e-12
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG+ +EC CGK F+ K L+ HQR+H+ +K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 50.6 bits (122), Expect = 4e-09
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TG++P+ C C K+F ++ L+ H++ H
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 49.5 bits (119), Expect = 1e-08
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G +K F C CG+SF + H+R+HTGE+
Sbjct: 2 SSGSSGTG-----------QKPF---ECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 49.1 bits (118), Expect = 1e-08
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ KP+ C C +SF+ K L+ H+ H G K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 40.6 bits (96), Expect = 1e-05
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPC 284
+ G KP+ C CG+ F KG +HQ+IH+G + P
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTG--EKSGPS 43
Score = 39.4 bits (93), Expect = 4e-05
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ KPF+C C K FR+K L H+ HTG +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG 45
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 1e-12
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACK 227
+ TG YECN CGK F +S L HQ +H+ KP
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 50.6 bits (122), Expect = 4e-09
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C KAF RS+L H+ H
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 49.5 bits (119), Expect = 1e-08
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G +K + CN CG++F+ S + H+ +HTG++P
Sbjct: 2 SSGSSGTG-----------EKPY---ECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY C C ++F + +L H+ H G KP
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 36.0 bits (84), Expect = 7e-04
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C +C K F + L H+A HTG+ ++
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-12
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG + C+ CGK F +K+ LI+HQ++H+ ++P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 50.2 bits (121), Expect = 6e-09
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G + F+ C+ CG+ FT + + IH+++HTGERP
Sbjct: 2 SSGSSGTG-----------ENPFI---CSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE P+ C C K F ++ L++H+K H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ + P+ C C + F K L+ H+ H G +P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 40.9 bits (97), Expect = 1e-05
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G P+ C CG+ F K HQKIH+G
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTG 37
Score = 35.9 bits (84), Expect = 7e-04
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ + PF C +C K F K L H+ HTG ++
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS 45
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 60.3 bits (147), Expect = 2e-12
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ +G ++C CGKGF S HQR HS +KP
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 51.4 bits (124), Expect = 3e-09
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICG 258
S +KP+ C+ C + F T H+ H G KP G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 49.9 bits (120), Expect = 1e-08
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S SG +K F C CG+ F S H+R H+GE+P
Sbjct: 2 SSGSSGSG-----------EKPFK---CEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 47.9 bits (115), Expect = 5e-08
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+P+ CE C K F + S H++ H
Sbjct: 1 GSSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 42.2 bits (100), Expect = 4e-06
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G KP+ CE CG+GF T C SHQ+ HSG
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSG 37
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-12
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG +EC CGK F KS L +HQ++H+ +KP
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 8e-09
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TG + + C C KAF +STL +H+K H
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 49.4 bits (119), Expect = 1e-08
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G K F C CG++FT+ S +++H+++HTGE+P
Sbjct: 2 SSGSSGTG-----------GKHF---ECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 3e-08
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ K + C C ++F K TL H+ H G KP
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G K + C CG+ F K HQKIH+G
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTG 37
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-12
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ +G ++CN CGKGF +S+L H R+HS +K
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 46.8 bits (112), Expect = 1e-07
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S SG + F CN CG+ F + S +A H RLH+ E+
Sbjct: 2 SSGSSGSGE-----------RPF---KCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 46.4 bits (111), Expect = 1e-07
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GERP+ C C K F RS L H + H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 45.2 bits (108), Expect = 4e-07
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
S ++P+ C C + F + L H H K
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 41.0 bits (97), Expect = 1e-05
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G +P+ C CG+GF + H ++HS
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSR 37
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ ++PF+C +C K F + L H H+ ++
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 2e-12
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y+C+ CGK F KS L +HQ+ H+ ++
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 51.0 bits (123), Expect = 4e-09
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G + Y C+ CG++FT+ S + IH++ HTGER
Sbjct: 2 SSGSSGTGE--KPY------------KCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C KAF +S L +H++ H
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ +KPY C C ++F K L H+ H G +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 36.3 bits (85), Expect = 5e-04
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C C K F K GL H+ HTG ++
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 2e-12
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG YEC+ C K F + + L HQRVHS +KP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 52.5 bits (127), Expect = 1e-09
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C++C KAF ++L H++ H
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 213 VHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY C C ++F +L H+ H G KP
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 47.9 bits (115), Expect = 5e-08
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G + Y C++C ++F+ + + H+R+H+GE+P
Sbjct: 2 SSGSSGTGE--KPY------------ECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C C K F L +H+ H+G ++
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 59.8 bits (146), Expect = 2e-12
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 190 HTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+G YEC+ CGK F K LI HQR H+ + +
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 46.7 bits (112), Expect = 9e-08
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSC 324
C+ CG++F + + H+R H GE S
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 44.0 bits (105), Expect = 9e-07
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 215 QRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
S + PY C C ++F K L+ H+ H G S
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 44.0 bits (105), Expect = 1e-06
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 313 KRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE PY C C KAF + L+ H++ H
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 37.9 bits (89), Expect = 1e-04
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 243 ENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G PY C CG+ F K SHQ+ H+G
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAG 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 3e-12
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG ++CN CGK F ++LI HQR+H+ +KP
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 9e-09
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G R + CN CG+SF Q + + H+R+HTGE+P
Sbjct: 2 SSGSSGTGE--RPH------------KCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGERP+ C C K+F+ + L+ H++ H
Sbjct: 1 GSSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 46.7 bits (112), Expect = 1e-07
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ ++P+ C C +SF L+ H+ H G KP
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 35.9 bits (84), Expect = 8e-04
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ ++P +C +C K F L +H+ HTG ++
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 59.4 bits (145), Expect = 3e-12
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG YEC CGK F ++LI HQRVH+ +KP
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G +K + C CG++F+Q + + H+R+HTGE+P
Sbjct: 2 SSGSSGTG-----------EKPY---ECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 4e-08
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C+ C KAF + L+ H++ H
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 47.1 bits (113), Expect = 7e-08
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ +KPY CK C ++F L+ H+ H G KP
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C +C K F L +H+ HTG ++
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 3e-12
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ TG Y C CGK F L+ H+R+HS +KP +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS 45
Score = 49.8 bits (120), Expect = 9e-09
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+ Y+C+ C K+F L+ H++ H
Sbjct: 1 GSSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 49.4 bits (119), Expect = 1e-08
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G +KL+ +C CG+SF++ + H+RLH+GE+P
Sbjct: 2 SSGSSGTG-----------EKLY---NCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 48.7 bits (117), Expect = 2e-08
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ +K Y CK C +SF LL HE H G KP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 36.4 bits (85), Expect = 6e-04
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +K + C +C K F L +HE H+G ++
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS 45
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 3e-12
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ G+ ++CN C K F S L VHQR+H+ +KP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 51.7 bits (125), Expect = 2e-09
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G KKLF CN C ++FTQ S + +H+R+HTGE+P
Sbjct: 2 SSGSSGAG-----------KKLF---KCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
G++ + C C K F S+L VH++ H
Sbjct: 1 GSSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ K + C C ++F +L H+ H G KP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ K F+C +C+K F L H+ HTG ++
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS 45
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 3e-12
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 185 EHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ +G ++C CGK F S+L HQRVH+ +KP +
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
Score = 49.5 bits (119), Expect = 1e-08
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S SG +K F C CG+ FTQ S + H+R+HTGE+P
Sbjct: 2 SSGSSGSG-----------EKPF---QCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 2e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
S +KP+ C+ C + F L H+ H G KP
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 7e-08
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+P+ CE C K F S L H++ H
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 37.1 bits (87), Expect = 2e-04
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KPFQC +C KRF L H+ HTG ++
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 3e-12
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 185 EHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ TG Y CN CGK F ++L H RVH+ + +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 49.4 bits (119), Expect = 1e-08
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PYSC +C KAFV + L H + H
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 47.1 bits (113), Expect = 8e-08
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G + Y SCN+CG++F + + H R+HT E
Sbjct: 2 SSGSSGTGE--KPY------------SCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 46.7 bits (112), Expect = 1e-07
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY+C C ++F L H H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 59.4 bits (145), Expect = 3e-12
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ TG +EC CGK F S L HQR+H+ +KP +
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 49.8 bits (120), Expect = 1e-08
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G + + C CG+SF+ S +A H+R+HTGE+P
Sbjct: 2 SSGSSGTGE--KPF------------ECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 49.0 bits (118), Expect = 2e-08
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KP+ C C +SF L H+ H G KP
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 4e-08
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+P+ C C K+F S L H++ H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 3e-12
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y+C CGKG+ +K L +HQ+VH+ ++P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 52.9 bits (128), Expect = 7e-10
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY CE C K + S+ L +H+K H
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G +K + C CG+ + + +H+++HTGERP
Sbjct: 2 SSGSSGTG-----------EKPY---KCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 47.9 bits (115), Expect = 4e-08
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ +KPY C+ C + + +K L H+ H G +P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G KPY CE CG+G+ +K HQK+H+G
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTG 37
Score = 37.1 bits (87), Expect = 3e-04
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C KC K + SK LD H+ HTG ++
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 4e-12
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y+C+ C K F+ S L VHQR+H+ +KP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 4e-09
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C++C+K+F S+L VH++ H
Sbjct: 1 GSSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 49.0 bits (118), Expect = 2e-08
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G + Y C++C +SF S + +H+R+HTGE+P
Sbjct: 2 SSGSSGTGE--KPY------------KCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ +KPY C C +SF+ +L H+ H G KP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 59.5 bits (145), Expect = 4e-12
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ G + C+ CGK F S I H+R+H+ +KP +
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS 45
Score = 48.3 bits (116), Expect = 3e-08
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
GER + C C K F+ S + H++ H
Sbjct: 1 GSSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 47.9 bits (115), Expect = 5e-08
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S G ++ C+ CG+ F Q S H+R+HTGE+P
Sbjct: 2 SSGSSGHG-----------ERGH---RCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 44.5 bits (106), Expect = 7e-07
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
++ + C C + F + H H G KP
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 1e-05
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G + + C CG+ F+ H++IH+G
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTG 37
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 4e-12
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y+CN CGK F++ SYL HQR+H+ +KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 5e-08
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C K F S L H++ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 47.5 bits (114), Expect = 7e-08
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G +K + CN CG+ F S ++ H+R+HTGE+P
Sbjct: 2 SSGSSGTG-----------EKPY---KCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 7e-08
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY C C + F+ L H+ H G KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 4e-12
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y CN CGK F KS+L H+R+H+ +KP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C K+F+ +S L H++ H
Sbjct: 1 GSSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 48.7 bits (117), Expect = 2e-08
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G + Y CN CG+SF Q S + H+R+HTGE+P
Sbjct: 2 SSGSSGTGE--KPY------------ICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 1e-07
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY C C +SF K L H H G KP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 4e-12
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y+CN CGK F S L HQRVH+ +KP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 9e-09
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G + Y CN CG++F+Q S +A H+R+HTGE+P
Sbjct: 2 SSGSSGTGG--KPY------------QCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 49.1 bits (118), Expect = 2e-08
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 311 IHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TG +PY C C KAF S L H++ H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ KPY C C ++F L H+ H G KP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 8e-04
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ KP+QC +C K F L H+ HTG ++
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 59.1 bits (144), Expect = 4e-12
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ G Y+C+ C K F K L+VHQR+H+ +KP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 47.5 bits (114), Expect = 5e-08
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G + C+ C +SF+ + +H+R+HT E+P
Sbjct: 2 SSGSSGAG-----------VNPY---KCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ PY C C +SF K LL H+ H KP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
G PY C C K+F + L+VH++ H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 42.1 bits (100), Expect = 5e-06
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ GV PY C C + F K HQ++H+
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTR 37
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.0 bits (144), Expect = 4e-12
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y C CGK F ++S LI HQ++H+ +KP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGERPY C +C KAF RS L+ H+K H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 49.0 bits (118), Expect = 2e-08
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G R Y C +CG++FT S + H+++HTGE+P
Sbjct: 2 SSGSSGTGE--RPY------------ICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ ++PY C C ++F + L+ H+ H G KP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G +PY C +CG+ F + HQKIH+G
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 34.0 bits (79), Expect = 0.003
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ ++P+ C C K F + L +H+ HTG ++
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 5e-12
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y+CN CGK F S L HQR+H+ +KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G + Y CN CG++F+Q S +A H+R+HTGE+P
Sbjct: 2 SSGSSGTGE--KPY------------KCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 4e-08
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C KAF S L H++ H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 47.1 bits (113), Expect = 8e-08
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY C C ++F L H+ H G KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C +C K F L H+ HTG ++
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 5e-12
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y+CN CGK F S+L HQR+H+ KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G +K + CN CG+ FTQ S +A H+R+HTG +P
Sbjct: 2 SSGSSGTG-----------EKPY---KCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 47.1 bits (113), Expect = 7e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY C C + F L +H+ H GVKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 47.1 bits (113), Expect = 7e-08
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C K F S L H++ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 36.0 bits (84), Expect = 8e-04
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C +C K F L H+ HTG ++
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 59.1 bits (144), Expect = 5e-12
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG ++C CGKGF +S L VH ++H+ +KP
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+P+ C C K F RS L VH K H
Sbjct: 1 GSSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 49.4 bits (119), Expect = 1e-08
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G +K F C CG+ F++ S + +H +LHTGE+P
Sbjct: 2 SSGSSGTG-----------EKPF---KCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 5e-08
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ +KP+ C C + F + L H H G KP
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 241 DHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G KP+ C CG+GF + H K+H+G
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTG 37
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 5e-12
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ +G Y C+ CGK F + L+ HQR+H+ +KP
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+PY C+ C KAF + L+ H++ H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 49.0 bits (118), Expect = 2e-08
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S SG +K +V C+ CG++F + + H+R+HTGE+P
Sbjct: 2 SSGSSGSG-----------EKPYV---CDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
S +KPY C C ++F L+ H+ H G KP
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP+ C C K F L H+ HTG ++
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 5e-12
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ G Y+C+ CGK F S+L HQRVH+ +KP +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 50.6 bits (122), Expect = 5e-09
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
GE+ Y C++C K F S L H++ H
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 49.8 bits (120), Expect = 9e-09
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S G +K + C++CG+ F+Q S + H+R+HTGE+P
Sbjct: 2 SSGSSGMG-----------EKCY---KCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 213 VHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+K Y C C + F L H+ H G KP
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 6e-04
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +K ++C C K F L H+ HTG ++
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 5e-12
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y+C+ CGK F KS L +HQ+ H+ ++
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 50.2 bits (121), Expect = 7e-09
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G + Y C+ CG+SFT S + IH++ HTGER
Sbjct: 2 SSGSSGTGE--KPY------------KCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 49.5 bits (119), Expect = 1e-08
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C K+F +S L +H+K H
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ +KPY C C +SF K L H+ H G +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 41.4 bits (98), Expect = 9e-06
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G KPY C CG+ F K + HQK H+G
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTG 37
Score = 36.0 bits (84), Expect = 7e-04
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C C K F K L H+ HTG ++
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS 45
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 5e-12
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ +G Y+C CGKG++ + L HQRVH+ +K
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+PY C C K + R L H++ H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
S +KPY C C + +K + L H+ H G K
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 47.1 bits (113), Expect = 8e-08
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S SG + Y C CG+ + + + H+R+HTGE+
Sbjct: 2 SSGSSGSGE--KPY------------KCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 241 DHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G KPY C CG+G+ + HQ++H+G
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTG 37
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C +C K ++ +L LD H+ HTG ++
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS 45
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 59.1 bits (144), Expect = 5e-12
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ + ++C+ CG+GF KS+L HQR+H+ +KP +
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45
Score = 45.6 bits (109), Expect = 2e-07
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
S+ K + C C R F K L H+ H G KP
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 3e-07
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S S K C+ CG+ FT S + H+R+HTGE+P
Sbjct: 2 SSGSSGSS-----------TKSH---QCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 3e-07
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ + + C C + F +S L H++ H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 42.9 bits (102), Expect = 2e-06
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ K + C CGRGF K HQ+IH+G
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTG 37
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 5e-12
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ G Y+C+ CGK F L H H+ +KP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 46.8 bits (112), Expect = 1e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSC 324
C+ CG+SF+ + H HT E+P
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 46.8 bits (112), Expect = 1e-07
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
GE+PY C C K+F L H H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 45.2 bits (108), Expect = 4e-07
Identities = 12/41 (29%), Positives = 14/41 (34%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+KPY C C +SF L H H KP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 41.0 bits (97), Expect = 1e-05
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G KPY C CG+ F H H+
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTR 37
Score = 36.4 bits (85), Expect = 6e-04
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP+QC +C K F L +H HT ++
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS 45
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 58.7 bits (143), Expect = 5e-12
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y+CN CGK F S L HQ++H+ +KP
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+ Y C C K F S L H+K H
Sbjct: 1 GSSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G ++Y CN CG+ F++ S ++ H+++HTGE+P
Sbjct: 2 SSGSSGTGE--KRY------------KCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 9e-08
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +K Y C C + F L H+ H G KP
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +K ++C +C K F L +H+ HTG ++
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 58.7 bits (143), Expect = 5e-12
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ TG Y+C CGKGF + L H VH+ +KP +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
Score = 50.6 bits (122), Expect = 5e-09
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY CE C K F+ R L H H
Sbjct: 1 GSSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 49.8 bits (120), Expect = 9e-09
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G +K + C CG+ F + H +HTGE+P
Sbjct: 2 SSGSSGTG-----------EKPY---KCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY C+ C + F ++ L H H G KP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C +C K F + L H HTG ++
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 6e-12
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y C CGK F K+ L HQR+H+ +KP
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C KAF ++ L H++ H
Sbjct: 1 GSSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G + Y C CG++F Q + + H+R+HTGE+P
Sbjct: 2 SSGSSGTGE--KPY------------RCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 5e-08
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ +KPY C C ++F K L H+ H G KP
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 6e-12
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 185 EHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ TG Y+C CGK F+ S+L+ H VHS ++P +
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
Score = 48.7 bits (117), Expect = 2e-08
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C++C KAF S L+ H H
Sbjct: 1 GSSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 47.1 bits (113), Expect = 7e-08
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ +KPY C+ C ++F+ L+ H + H G +P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 47.1 bits (113), Expect = 8e-08
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G + Y C +CG++F S + H +H+GERP
Sbjct: 2 SSGSSGTGE--KPY------------KCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 36.3 bits (85), Expect = 5e-04
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C C K FR L +H + H+G ++
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 6e-12
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ TG ++C CGK + + +L HQRVH+ +KP +
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 48.3 bits (116), Expect = 4e-08
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S +G +K F C CG+S+ Q + H+R+HTGE+P
Sbjct: 2 SSGSSGTG-----------EKPF---KCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 5e-08
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+P+ C C K++ R L H++ H
Sbjct: 1 GSSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 47.5 bits (114), Expect = 6e-08
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ +KP+ C C +S+ + L H+ H G KP
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 5e-04
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KPF+C +C K + ++ L +H+ HTG ++
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 7e-12
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACK 227
+ +G+ YEC C K F +L H+RVH+ ++
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 46.8 bits (112), Expect = 1e-07
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S SG KK + C C ++F Q + HKR+HTGER
Sbjct: 2 SSGSSGSG-----------KKPY---ECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+G++PY C+ C K F+ L HK+ H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 44.1 bits (105), Expect = 1e-06
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
S KPY CK C ++F L H+ H G +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G KPY C+ C + FI G H+++H+G
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTG 37
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 7e-12
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y C CGK F +S LI HQ++H+ KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G +K ++ C CG++FT S + H+++HT ++P
Sbjct: 2 SSGSSGTG-----------EKPYI---CAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 49.4 bits (119), Expect = 1e-08
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C KAF RS L+ H+K H
Sbjct: 1 GSSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY C C ++F + L+ H+ H KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G KPY C CG+ F + HQKIH+
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTK 37
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP+ C +C K F + L +H+ HT + ++
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 7e-12
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ TG Y+CN CGK F S+L H+RVH+ KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 49.4 bits (119), Expect = 1e-08
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G +K + CN CG+ FTQ S +A H+R+HTG +P
Sbjct: 2 SSGSSGTG-----------EKPY---KCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 48.7 bits (117), Expect = 3e-08
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C K F S L H++ H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 46.7 bits (112), Expect = 1e-07
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY C C + F L H H G KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C +C K F L H HTG ++
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 8e-12
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG ++C+ CGK F +S L H VH+ +KP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+P+ C++C K+F RS L H H
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 49.4 bits (119), Expect = 1e-08
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 213 VHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KP+ C C +SF + L H H KP
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 49.0 bits (118), Expect = 2e-08
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G +K F C+ICG+SF S + H +HT E+P
Sbjct: 2 SSGSSGTG-----------EKPF---KCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 40.9 bits (97), Expect = 1e-05
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G KP+ C+ICG+ F + H +H+
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTA 37
Score = 35.9 bits (84), Expect = 6e-04
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KPF+C C K F + L+ H HT ++
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 8e-12
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ TG Y C CGK F + S L HQR+H+ +KP +
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
Score = 49.8 bits (120), Expect = 9e-09
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY+CE C KAF+ S L H++ H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 49.1 bits (118), Expect = 2e-08
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY C+ C ++F L +H+ H G KP
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G + Y +C CG++F S + H+R+HTGE+P
Sbjct: 2 SSGSSGTGE--KPY------------NCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 8e-04
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP+ C +C K F L EH+ HTG ++
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 58.3 bits (142), Expect = 9e-12
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYA 225
G Y C+ CGK F K LIVH RVH+ P +
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 49.9 bits (120), Expect = 7e-09
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
GE+PY C+ C KAF + +L+VH + H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 47.6 bits (114), Expect = 5e-08
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 14/54 (25%)
Query: 270 HQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYS 323
G +K + C+ CG++F+Q + +H R+HTG P S
Sbjct: 2 SSGSSGG-----------EKPY---RCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 46.8 bits (112), Expect = 9e-08
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
+KPY C C ++F K +L+ H H G P S
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
G KPY C+ CG+ F KG H ++H+G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 9e-12
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ + Y+C CGKG+ + L +HQRVH +K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 51.0 bits (123), Expect = 4e-09
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ E+PY CE C K + R L +H++ H
Sbjct: 1 GSSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 49.4 bits (119), Expect = 1e-08
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S S +K + C CG+ + + + +H+R+H GE+
Sbjct: 2 SSGSSGSV-----------EKPY---KCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 48.6 bits (117), Expect = 3e-08
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
S +KPY C+ C + + + L H+ HMG K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 41.7 bits (99), Expect = 6e-06
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ KPY CE CG+G+ + HQ++H G
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 36.3 bits (85), Expect = 5e-04
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ V+KP++C C K + +L LD H+ H G ++
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ +G Y+CN CGK F S+L H R+H+ +KP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 8e-09
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S SG +K + CN CG+ FTQ S + H R+HTGE+P
Sbjct: 2 SSGSSGSG-----------EKPY---KCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 49.0 bits (118), Expect = 2e-08
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+PY C C K F S L H + H
Sbjct: 1 GSSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 45.9 bits (110), Expect = 2e-07
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
S +KPY C C + F L +H H G KP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.0 bits (141), Expect = 1e-11
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y+C CGK F + S HQR+H+ +P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 49.9 bits (120), Expect = 8e-09
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C KAF S+ H++ H
Sbjct: 1 GSSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 49.1 bits (118), Expect = 2e-08
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G + Y C CG++F S H+RLHTG+RP
Sbjct: 2 SSGSSGTGE--KPY------------KCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY C C ++F + H+ H G +P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 36.0 bits (84), Expect = 7e-04
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C +C K F +H+ HTG+ ++
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ TG Y+CN CGK F S+L H+ +H+ +KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 49.4 bits (119), Expect = 1e-08
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G +K + CN CG+ FTQ S +A H+ +HTGE+P
Sbjct: 2 SSGSSGTG-----------EKPY---KCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C K F S L H+ H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 46.3 bits (111), Expect = 1e-07
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY C C + F L H H G KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C +C K F L H HTG ++
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ +G ++C CGK F S L HQRVH+ +KP
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 1e-08
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S SG +K F C CG+ FTQ S + H+R+HTGE+P
Sbjct: 2 SSGSSGSG-----------EKPF---KCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 4e-08
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+P+ CE C K F S L H++ H
Sbjct: 1 GSSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 47.1 bits (113), Expect = 9e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
S +KP+ C+ C + F L H+ H G KP
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 241 DHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G KP+ CE CG+ F SHQ++H+G
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTG 37
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ TG ++C CGK F + L H+R+H+ +KP +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 50.6 bits (122), Expect = 4e-09
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+P+ C C KAF L H++ H
Sbjct: 1 GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G +K F C CG++F+ + H+R+HTGE+P
Sbjct: 2 SSGSSGTG-----------EKPF---DCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 5e-08
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KP+ C C ++F L H H G KP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y CN CGK F S L HQ +H+ +KP
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TG +PY C C KAF S+L H+ H
Sbjct: 1 GSSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 49.4 bits (119), Expect = 1e-08
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G + Y CN CG++F+ +S + H+ +HTGE+P
Sbjct: 2 SSGSSGTGV--KPY------------MCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 5e-08
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ KPY C C ++F +L H+ H G KP
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECN 199
S+ KP+ C +C K F L H+ HTG +
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ TG Y+CN CGK F S+L+ H+ +H+ +KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 49.4 bits (119), Expect = 1e-08
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G +K + CN CG+ FTQ S + H+ +HTGE+P
Sbjct: 2 SSGSSGTG-----------EKPY---KCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 4e-08
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C K F S L+ H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 45.9 bits (110), Expect = 2e-07
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY C C + F L+ H H G KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 35.1 bits (82), Expect = 0.002
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C +C K F L H HTG ++
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y+CN CGK F+ S L HQ +H+ +KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C KAF + S L H+ H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 48.7 bits (117), Expect = 2e-08
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G + Y CN CG++F S + H+ +HTGE+P
Sbjct: 2 SSGSSGTGE--KPY------------KCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 6e-08
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY C C ++F+ L H+ H G KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C +C K FR+ L H+ HTG ++
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS 45
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ +G ++C CGK F+ +L H R+H+ +KP +
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
Score = 49.0 bits (118), Expect = 2e-08
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S SG +K F C CG++F Q +A H R+HTGE+P
Sbjct: 2 SSGSSGSG-----------EKPF---KCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+P+ C+ C KAF L H + H
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 47.9 bits (115), Expect = 5e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
S +KP+ CK C ++F+ L H H G KP
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 4e-04
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KPF+C +C K FR + L H HTG ++
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y+C+ CGK F+ S+L HQ +H+ +KP
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 48.6 bits (117), Expect = 2e-08
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C K F S L H+ H
Sbjct: 1 GSSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G +K + C+ CG+ F + S +A H+ +HTGE+P
Sbjct: 2 SSGSSGTG-----------EKPY---KCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 46.3 bits (111), Expect = 1e-07
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY C C + F+ L H+ H G KP
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 35.5 bits (83), Expect = 0.001
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C +C K FR L H+ HTG ++
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG Y C CGK F ++S L HQ++H+ +KP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 8e-09
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+PY C C KAF RS L H+K H
Sbjct: 1 GSSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 49.4 bits (119), Expect = 1e-08
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G + Y C CG++FT S + H+++HTGE+P
Sbjct: 2 SSGSSGTGE--KPY------------RCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 4e-08
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KPY C C ++F + L H+ H G KP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 241 DHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G KPY C CG+ F + +HQKIH+G
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTG 37
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 1e-11
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ +G Y CN CGK F S+LI H + H +K +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
Score = 48.7 bits (117), Expect = 2e-08
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GERPY C C K F S L+ H K+H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 14/56 (25%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S SG R Y CN CG++F + S + H + H E+
Sbjct: 2 SSGSSGSGE--RPY------------GCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 47.9 bits (115), Expect = 4e-08
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
S ++PY C C ++F L++H RH K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 38.7 bits (91), Expect = 9e-05
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPC 284
+ G +PY C CG+ F H K H +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFR--EKSSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 1e-11
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG+ Y+CN CGK F S+L H+ +H+ +KP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 7e-09
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TG++PY C C K F S L H+ H
Sbjct: 1 GSSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 50.2 bits (121), Expect = 7e-09
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G KK + CN CG+ FTQ S +A H+ +HTGE+P
Sbjct: 2 SSGSSGTG-----------KKPY---KCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 4e-08
Identities = 12/43 (27%), Positives = 14/43 (32%)
Query: 213 VHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ KPY C C + F L H H G KP
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ KP++C +C K F L H HTG ++
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 59.8 bits (144), Expect = 2e-11
Identities = 15/108 (13%), Positives = 30/108 (27%), Gaps = 9/108 (8%)
Query: 237 QTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSC 296
+ + + G + C+ C + T H + + +
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHET---------DNN 55
Query: 297 NICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
N S + + + ++ C C +F S L VH K
Sbjct: 56 NPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Score = 57.1 bits (137), Expect = 1e-10
Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 7/110 (6%)
Query: 150 SSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEH-----EAKHTGRYEYECNACGKG 204
SS + + S F+C C + + + L H + N
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 205 FQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDH--ENRHMGVKPY 252
K L+ + K C C SF++ Q L H + +H
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111
Score = 54.4 bits (130), Expect = 1e-09
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 5/93 (5%)
Query: 183 LDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRV--HSTDKPYACKTC---PRSFKTKQ 237
+ + TG ++ C C + L VH H D + S K+
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 238 TLLDHENRHMGVKPYSCEICGRGFITKGLCKSH 270
+LL+ E + K C CG F + H
Sbjct: 67 SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 51.3 bits (122), Expect = 1e-08
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 140 HKCDRCPKKFSSLAKYNFHV--SNHGVDKPFQCFKCEKRFRSKLG---LDEHEAKHTGRY 194
+C C + +L + H+ + H D + + SK L E E K +
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 195 EYECNACGKGFQNKSYLIVH--QRVHSTDKPY 224
+C CG F++ L VH + H
Sbjct: 80 VLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111
Score = 39.0 bits (90), Expect = 4e-04
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 304 TQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKK 342
+ S ++ + TG + C+ C+ A+ + L VH
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN 40
Score = 25.9 bits (56), Expect = 9.4
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 132 GKPESKSLHKCDRCPKKFSSLAKYNFHV--SNHGVDKPFQ 169
GK +++ + KC C F SL + H+ + H
Sbjct: 73 GKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 56.8 bits (138), Expect = 3e-11
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ +G + C+ CGK F S L +HQRVH +K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 47.6 bits (114), Expect = 6e-08
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S SG + + +C+ CG++F S + IH+R+H GE+
Sbjct: 2 SSGSSGSGE--KSH------------TCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 46.8 bits (112), Expect = 1e-07
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
S +K + C C ++F L H+ HMG K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 46.8 bits (112), Expect = 1e-07
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+ ++C+ C K F S L +H++ H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 39.9 bits (94), Expect = 3e-05
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G K ++C+ CG+ F + HQ++H G
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMG 37
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.7 bits (138), Expect = 3e-11
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ +G Y+C+ CGK F ++L H+R+H+ +P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+PY C C KAF + L H++ H
Sbjct: 1 GSSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 46.7 bits (112), Expect = 1e-07
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 14/57 (24%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S SG + Y C+ CG++F + + + H+R+HTG RP
Sbjct: 2 SSGSSGSGE--KPY------------KCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCE 255
S +KPY C C ++F L +H H G +P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 35.6 bits (83), Expect = 9e-04
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KP++C +C K F L+EH HTG ++
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 56.4 bits (137), Expect = 4e-11
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ G ++C C F S L +HQ VH +KP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 47.9 bits (115), Expect = 4e-08
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSC 324
C C F+Q S + +H+ +H GE+P
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 45.6 bits (109), Expect = 3e-07
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
GE+ + C C+ F S+L +H+ H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 44.8 bits (107), Expect = 5e-07
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+K + C+ C F +L H+N H+G KP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 42.9 bits (102), Expect = 2e-06
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ MG K + C C F + HQ +H G
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVG 37
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 56.0 bits (136), Expect = 5e-11
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 187 EAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYA 225
+ +G+ YEC CGK F+ K L +H+R+H+ P +
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYS 323
C CG+SF Q + +H+R+HTG P S
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 42.6 bits (101), Expect = 3e-06
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 313 KRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+G+R Y C+ C K+F + +L +H++ H
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 37.2 bits (87), Expect = 2e-04
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 215 QRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
S + Y C+ C +SF+ K +L HE H G P S
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 36.4 bits (85), Expect = 5e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 243 ENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G + Y C+ CG+ F KG H++IH+G
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTG 35
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 56.4 bits (137), Expect = 6e-11
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVH-QRVHSTDKPYACKTCPRSFKT 235
+ + Y C +CGKGF +L H ++VH++++P+ C+ +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 54.5 bits (132), Expect = 3e-10
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENR-HMGVKPYSCEICGRGF 261
S KPY C++C + F L H + H +P+ C++ G
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 52.2 bits (126), Expect = 1e-09
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 296 CNICGQSFTQFSPMAIH-KRLHTGERPYSCELCNKAF 331
C CG+ F++ + H K++HT ERP+ C++
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 41.8 bits (99), Expect = 7e-06
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKK 343
+ +PY C+ C K F L H K+
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQ 34
Score = 30.2 bits (69), Expect = 0.096
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 140 HKCDRCPKKFSSLAKYNFHVSN-HGVDKPFQCFKCEKRFRS 179
+ C C K FS N H+ H ++P +C S
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 55.3 bits (134), Expect = 1e-10
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQR-VHSTDKPYAC 226
+ TG+ YEC CGK F + LI H R H+ +KP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 47.2 bits (113), Expect = 8e-08
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVH 340
TG++PY C C KAF+ ++L+ H
Sbjct: 1 GSSGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 46.0 bits (110), Expect = 2e-07
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENR-HMGVKPYSC 254
+ KPY C C ++F +L+ H H G KP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 45.3 bits (108), Expect = 4e-07
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 15/57 (26%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRL-HTGERPYSC 324
S +G + Y C CG++F Q + + H R HTGE+P
Sbjct: 2 SSGSSGTGK--KPY------------ECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 54.6 bits (132), Expect = 2e-10
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYA 225
G Y C CGK F + L VHQR S P +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 46.1 bits (110), Expect = 2e-07
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYS 323
C CG+SFTQ +A+H+R + P S
Sbjct: 14 CGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 45.0 bits (107), Expect = 4e-07
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
GE PY C C K+F R +L VH++
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 43.4 bits (103), Expect = 2e-06
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
G PY C CG+ F +G HQ+ S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQ 36
Score = 41.1 bits (97), Expect = 9e-06
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
+ PY C C +SF + +L H+ P S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 55.0 bits (133), Expect = 2e-10
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 267 CKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCEL 326
++ + R Y CPV C + F++ + H R+HTG++P+ C +
Sbjct: 5 PMNNLLNYVVPKMRPYACPV----------ESCDRRFSRSDELTRHIRIHTGQKPFQCRI 54
Query: 327 CNKAFVSRSTLMVHKKKH 344
C + F L H + H
Sbjct: 55 CMRNFSRSDHLTTHIRTH 72
Score = 51.5 bits (124), Expect = 4e-09
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 209 SYLIVHQRVHSTDKPYAC--KTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGL 266
+ L+ + +PYAC ++C R F L H H G KP+ C IC R F
Sbjct: 7 NNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH 64
Query: 267 CKSHQKIHS 275
+H + H+
Sbjct: 65 LTTHIRTHT 73
Score = 44.2 bits (105), Expect = 2e-06
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 189 KHTGRYEYECN--ACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRH 246
Y C +C + F L H R+H+ KP+ C+ C R+F + DH H
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF----SRSDHLTTH 68
Query: 247 M 247
+
Sbjct: 69 I 69
Score = 43.4 bits (103), Expect = 3e-06
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 148 KFSSLAKYNFHVSNHGVDKPFQC--FKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGF 205
+ + +V +P+ C C++RF L H HTG+ ++C C + F
Sbjct: 2 EPHPMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Query: 206 QNKSYLIVHQRVHS 219
+L H R H+
Sbjct: 60 SRSDHLTTHIRTHT 73
Score = 38.1 bits (89), Expect = 3e-04
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 18/82 (21%)
Query: 240 LDHENRHM--GVKPYSC--EICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKS 295
+++ ++ ++PY+C E C R F H +IH+G + + C +C +
Sbjct: 6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQ--KPFQCRICMR------ 57
Query: 296 CNICGQSFTQFSPMAIHKRLHT 317
+F++ + H R HT
Sbjct: 58 ------NFSRSDHLTTHIRTHT 73
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 55.0 bits (132), Expect = 5e-10
Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 161 NHGVDKPFQCFKCEKRFRSKLGLDEH-EAKHTGRYEY--------ECNACGKGFQNKSYL 211
C++ F + L H +H G E EC GK F+ K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 212 IVHQRVHSTDKPYAC 226
+ H RVH+ +K
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 53.0 bits (127), Expect = 2e-09
Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 35/109 (32%)
Query: 217 VHSTDKPYACKTCPRSFKTKQTLLDH-ENRHMGVKPYSCEICGRGFITKGLCKSHQKIHS 275
+ K+C R+F T L+ H H+G + +C
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW---------------- 62
Query: 276 GNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
+ C G+SF + H R+HTGE+
Sbjct: 63 ------------------EECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 48.8 bits (116), Expect = 8e-08
Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 9/74 (12%)
Query: 190 HTGRYEYECNACGKGFQNKSYLIVH-QRVHSTDKPYACKTCP--------RSFKTKQTLL 240
+ +C + F L+ H H C +SFK K L+
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 241 DHENRHMGVKPYSC 254
+H H G K
Sbjct: 80 NHIRVHTGEKSGPS 93
Score = 38.0 bits (88), Expect = 4e-04
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 295 SCNICGQSFTQFSPMAIH-KRLHTGERPYS--------CELCNKAFVSRSTLMVHKKKH 344
C ++F+ + H H G + C K+F ++ L+ H + H
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Score = 29.9 bits (67), Expect = 0.29
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 315 LHTGERPYSCELCNKAFVSRSTLMVH 340
+ + + C++ F + L+ H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTH 44
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 52.4 bits (126), Expect = 2e-09
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 14/79 (17%)
Query: 268 KSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSC--E 325
Q S R + C CG+++ + S + H R HTGE+P+SC +
Sbjct: 6 SGPQIDSSRI--RSHICSH----------PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWK 53
Query: 326 LCNKAFVSRSTLMVHKKKH 344
C + F L H++ H
Sbjct: 54 GCERRFARSDELSRHRRTH 72
Score = 44.7 bits (106), Expect = 1e-06
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 182 GLDEHEAKHTGRYEYECN--ACGKGFQNKSYLIVHQRVHSTDKPYAC--KTCPRSFKTKQ 237
G + + + C+ CGK + S+L H R H+ +KP++C K C R F
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 238 TLLDHENRH 246
L H H
Sbjct: 64 ELSRHRRTH 72
Score = 39.7 bits (93), Expect = 8e-05
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 208 KSYLIVHQRVHSTDKPYACK--TCPRSFKTKQTLLDHENRHMGVKPYSC--EICGRGFIT 263
S Q S + + C C +++ L H H G KP+SC + C R F
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 264 KGLCKSHQKIH 274
H++ H
Sbjct: 62 SDELSRHRRTH 72
Score = 38.5 bits (90), Expect = 2e-04
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 158 HVSNHGVDKPFQCFK--CEKRFRSKLGLDEHEAKHTGRYEYECN--ACGKGFQNKSYLIV 213
+ + C C K + L H HTG + C+ C + F L
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSR 67
Query: 214 HQRVH 218
H+R H
Sbjct: 68 HRRTH 72
Score = 35.4 bits (82), Expect = 0.002
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 307 SPMAIHKRLHTGERPYSC--ELCNKAFVSRSTLMVHKKKH 344
S + + + R + C C K + S L H + H
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH 42
Score = 26.6 bits (59), Expect = 3.1
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 140 HKCDR--CPKKFSSLAKYNFHVSNHGVDKPFQC--FKCEKRFRSKLGLDEHEAKH 190
H C C K + + H H +KPF C CE+RF L H H
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 51.0 bits (123), Expect = 3e-09
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYA 225
G Y+C CG F ++L H +H+ P +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 47.5 bits (114), Expect = 6e-08
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
GE+PY CE C FV + L H H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 46.7 bits (112), Expect = 1e-07
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYS 323
C CG F Q + + H +HTG P S
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
+KPY C+TC F L H H G P S
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
G KPY CE CG F+ ++H IH+G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTG 36
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 51.0 bits (123), Expect = 3e-09
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 185 EHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ T Y CN CGK F +L HQ++H+ +
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 48.0 bits (115), Expect = 4e-08
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 310 AIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
T + Y+C C KAF L H+K H
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 41.4 bits (98), Expect = 7e-06
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 18/58 (31%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKS--CNICGQSFTQFSPMAIHKRLHTGERPYSC 324
S + SKS CN CG++FT+ + H+++HT + S
Sbjct: 2 SSGSSGTD----------------SKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 40.6 bits (96), Expect = 1e-05
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ K Y C C ++F L H+ H S
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 241 DHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ K Y+C CG+ F HQKIH+
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTR 37
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 3e-09
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+ TG ++C CG F L H R H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 47.2 bits (113), Expect = 7e-08
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
TGE+P+ C+ C F +L H + H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 45.7 bits (109), Expect = 3e-07
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
+ +KP+ CK C +F +L H H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 42.6 bits (101), Expect = 3e-06
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSC 324
C CG +F+ + H R H P
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G KP+ C+ CG F H + H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHER 37
Score = 24.9 bits (55), Expect = 6.8
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 140 HKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCF 171
+C C FS H+ +H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 51.6 bits (123), Expect = 3e-09
Identities = 21/55 (38%), Positives = 24/55 (43%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVK 250
Y C CG + S L H R H+ +PY C C SFKTK L H K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 49.3 bits (117), Expect = 2e-08
Identities = 18/49 (36%), Positives = 23/49 (46%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
C CG + S + H R HT RPY C CN +F ++ L H K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 44.7 bits (105), Expect = 8e-07
Identities = 15/55 (27%), Positives = 22/55 (40%)
Query: 168 FQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDK 222
+ C +C R + L +H HT Y C C F+ K L H + + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 44.7 bits (105), Expect = 9e-07
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 224 YACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
Y C+ C K L H H V+PY C C F TKG H K +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 39.7 bits (92), Expect = 5e-05
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 140 HKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+ C+ C + + H+ H +P+ C C F++K L +H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 37.8 bits (87), Expect = 3e-04
Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 14/69 (20%)
Query: 252 YSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAI 311
Y CE CG + K H + H+ C C SF +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYH--------------CTYCNFSFKTKGNLTK 47
Query: 312 HKRLHTGER 320
H + +
Sbjct: 48 HMKSKAHSK 56
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 49.0 bits (118), Expect = 2e-08
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYA 225
G Y C CG F++ L H R+H+ P +
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 47.9 bits (115), Expect = 4e-08
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 295 SCNICGQSFTQFSPMAIHKRLHTGERPYS 323
C ICG F + H R+HTG P S
Sbjct: 13 PCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 46.7 bits (112), Expect = 1e-07
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
GE+PY CE+C F TL H + H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 44.4 bits (106), Expect = 7e-07
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
+KPY C+ C F+ QTL H H G P S
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 43.6 bits (104), Expect = 1e-06
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
G KPY CEICG F KSH +IH+G
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 35.9 bits (84), Expect = 7e-04
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+ G +KP+ C C RFR L H HTG
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTG 36
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 48.5 bits (116), Expect = 2e-08
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 190 HTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYAC 226
+G Y C C + F + + L+ HQ++H+ +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 43.5 bits (103), Expect = 2e-06
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 316 HTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+PYSC C + F + L+ H+K H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 38.8 bits (91), Expect = 7e-05
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 295 SCNICGQSFTQFSPMAIHKRLHTGERPYSC 324
SC C ++F+ + + H+++HT + S
Sbjct: 12 SCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 38.1 bits (89), Expect = 1e-04
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 216 RVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSC 254
S +KPY+C C +F L+ H+ H S
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 37.3 bits (87), Expect = 2e-04
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 246 HMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
G KPYSC C F HQK+H+
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTV 35
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 49.5 bits (117), Expect = 6e-08
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 135 ESKSLHKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRY 194
E+K +++C C K SSL + H C C RF S EHE+K +
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYK- 68
Query: 195 EYECNACGKGFQNKSYLIVHQ-RVHSTD 221
+ C C + F++ + HQ VH+ +
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 48.7 bits (115), Expect = 1e-07
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPY 224
+ +QC C + S L HE R C C F + H+ K
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKL 70
Query: 225 ACKTCPRSFKTKQTLLDHE 243
C C R+FK+ ++ H+
Sbjct: 71 TCLECMRTFKSSFSIWRHQ 89
Score = 44.5 bits (104), Expect = 3e-06
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Query: 185 EHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHEN 244
+ + Y+C C + H+R+ C C F + + +HE+
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHES 63
Query: 245 RHMGVKPYSCEICGRGFITKGLCKSHQK 272
+ K +C C R F + HQ
Sbjct: 64 KCEY-KKLTCLECMRTFKSSFSIWRHQV 90
Score = 40.3 bits (93), Expect = 9e-05
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 17/104 (16%)
Query: 240 LDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNIC 299
+ + Y C +C + SH+++ CP C F S
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC----RNAAVCPYCSLRFFSPE---- 56
Query: 300 GQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKK 343
+ + +C C + F S ++ H+ +
Sbjct: 57 ---------LKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 30.6 bits (68), Expect = 0.24
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 295 SCNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
C +C + H+RL C C+ F S H+ K
Sbjct: 18 QCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKC 65
Score = 26.4 bits (57), Expect = 6.4
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 307 SPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
S + + + Y C LCN S H++
Sbjct: 3 SGSSGASPVE-NKEVYQCRLCNAKLSSLLEQGSHERLC 39
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 47.7 bits (113), Expect = 9e-08
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 7/71 (9%)
Query: 182 GLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLD 241
+ + H G +C+ CG F +S L K C+ C + + L
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNK 57
Query: 242 HENRHMGVKPY 252
E G K
Sbjct: 58 DEGNESGKKTS 68
Score = 46.6 bits (110), Expect = 3e-07
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 209 SYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCK 268
Q++H D+ C C F + TL K CE C + +
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALN 56
Query: 269 SHQKIHSG 276
+ SG
Sbjct: 57 KDEGNESG 64
Score = 43.5 bits (102), Expect = 4e-06
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 7/68 (10%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRV 217
H D+ +C KC F + + R C C K ++ L +
Sbjct: 9 RQKIHLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNKDEGN 61
Query: 218 HSTDKPYA 225
S K
Sbjct: 62 ESGKKTSG 69
Score = 41.6 bits (97), Expect = 2e-05
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 21/77 (27%)
Query: 268 KSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCELC 327
QKIH G+ +++ C+ CG F + S + + CE C
Sbjct: 7 GKRQKIHLGDRSQK--------------CSKCGIIFIRRST-------LSRRKTPMCEKC 45
Query: 328 NKAFVSRSTLMVHKKKH 344
K + L +
Sbjct: 46 RKDSCQEAALNKDEGNE 62
Score = 39.6 bits (92), Expect = 7e-05
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 307 SPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKK 342
+++H G+R C C F+ RSTL K
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKT 39
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 46.4 bits (110), Expect = 2e-07
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKP 223
+ G ++C+ C + F ++YL+ H+R H+
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 40.6 bits (95), Expect = 2e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
GE P+ C C++ F R+ L+ H++ H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 37.1 bits (86), Expect = 3e-04
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSG 276
+ G P+ C C R F + H++ H+
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 36.4 bits (84), Expect = 6e-04
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGR 193
S+ + PF+C KC++ F + L +HE H +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 36.0 bits (83), Expect = 6e-04
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYS 253
+ + P+ C C R F + L+ HE H S
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPS 42
Score = 33.7 bits (77), Expect = 0.005
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGERPYS 323
C+ C + FTQ + + H+R H + S
Sbjct: 15 CSKCDRVFTQRNYLVQHERTHARKSGPS 42
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 45.7 bits (108), Expect = 3e-07
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 189 KHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTC 229
R + C CGK F++ +L H+ HS +KPY+
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 45.3 bits (107), Expect = 4e-07
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 295 SCNICGQSFTQFSPMAIHKRLHTGERPYSCELCN 328
+C ICG+ F + HK H+GE+PYS +
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 40.7 bits (95), Expect = 2e-05
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 215 QRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEIC 257
T K AC+ C + F+ L H+ H G KPYS
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 34.1 bits (78), Expect = 0.003
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 314 RLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ +CE+C K F L HK H
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 33.8 bits (77), Expect = 0.005
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVC 287
K +CEICG+ F H+ HSG + Y
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSG--EKPYSSGPS 46
Score = 33.0 bits (75), Expect = 0.011
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 160 SNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNAC 201
S+ K C C K FR L+ H+ H+G Y
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 31.1 bits (70), Expect = 0.041
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 133 KPESKSLHKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKC 173
++ C+ C K F + N H +H +KP+
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 45.0 bits (107), Expect = 4e-07
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 312 HKRLHTGERPYSCELCNKAFVSRST-LMVHKKKH 344
R TG +P+ C C+++F SRS L +H+K+H
Sbjct: 2 STRGSTGIKPFQCPDCDRSF-SRSDHLALHRKRH 34
Score = 36.9 bits (86), Expect = 3e-04
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 214 HQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGV 249
R + KP+ C C RSF L H RHM V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 34.2 bits (79), Expect = 0.002
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVH 218
TG ++C C + F +L +H++ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 33.8 bits (78), Expect = 0.004
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 242 HENRHMGVKPYSCEICGRGFITKGLCKSHQKIH 274
G+KP+ C C R F H+K H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 27.7 bits (62), Expect = 0.51
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 158 HVSNHGVDKPFQCFKCEKRF-RSKLGLDEHEAKHTGR 193
KPFQC C++ F RS +H A H R
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRS-----DHLALHRKR 33
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 43.1 bits (102), Expect = 2e-06
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 312 HKRLHTGERPYSC--ELCNKAFVSRSTLMVHKKKH 344
TGE+P++C C F L H++ H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 42.3 bits (100), Expect = 5e-06
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 186 HEAKHTGRYEYECN--ACGKGFQNKSYLIVHQRVHSTDKPYACKT 228
+ TG + C CG F L H+R HS KP +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
Score = 41.1 bits (97), Expect = 1e-05
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 12/57 (21%)
Query: 269 SHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCE 325
S +G + + C CG F++ ++ H+R H+G +P
Sbjct: 2 SSGSSGTGE--KPFACTW----------PGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 40.4 bits (95), Expect = 2e-05
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 214 HQRVHSTDKPYACK--TCPRSFKTKQTLLDHENRHMGVKPYSCE 255
+ +KP+AC C F L H H GVKP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 33.8 bits (78), Expect = 0.004
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 158 HVSNHGVDKPFQC--FKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
S+ +KPF C C RF L H H+G ++
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 46.4 bits (109), Expect = 9e-06
Identities = 17/196 (8%), Positives = 36/196 (18%), Gaps = 14/196 (7%)
Query: 28 SKQPTSEPSQDVNYILSHMETYRQMPQQTIPVTPVLSNGVLVGALTNGVPVNSDDGDKGG 87
Q+ + E +Q + S + + N +
Sbjct: 25 DGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKK 84
Query: 88 DAQSKSTVVKSDLIKDPIASDDNMEDGYMDEPETDINPKEVIDTGKPESKSLHKCD-RCP 146
V + KD + D+ + + + E D
Sbjct: 85 GNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGG 144
Query: 147 KKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQ 206
+ + + Y+C+ C
Sbjct: 145 SNQKPM-------------STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLF 191
Query: 207 NKSYLIVHQRVHSTDK 222
+ L H H
Sbjct: 192 SPLDLDAHVASHGLHG 207
Score = 40.2 bits (93), Expect = 8e-04
Identities = 7/52 (13%), Positives = 14/52 (26%)
Query: 293 SKSCNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
++ ++ + Y C +C+ S L H H
Sbjct: 152 TRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 36.0 bits (82), Expect = 0.020
Identities = 31/248 (12%), Positives = 63/248 (25%), Gaps = 13/248 (5%)
Query: 75 GVPVNSDDGDKGGDAQSKSTVVKSDLIKDPIASDDNMEDGYMDEPETDINPKEVIDTGKP 134
+P + G + ST D +N EP T N ++
Sbjct: 3 RIPRKTKGKSSGKG--NDSTERSDDGSSQLRDKQNNKAGPATTEPGTS-NREQYRARPGI 59
Query: 135 ESKSLHKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRY 194
S + + G + + + + +AK T +
Sbjct: 60 ASVQ-RATE--SAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKS 116
Query: 195 EYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKP--- 251
+ + G N + L V + R + ++ +G+ P
Sbjct: 117 KAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTAS 176
Query: 252 ----YSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFS 307
Y C +C + +H H + N ++ + Q S
Sbjct: 177 SGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHITEFISSWQNHPIVQVS 236
Query: 308 PMAIHKRL 315
+K+
Sbjct: 237 ADVENKKT 244
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 42.6 bits (99), Expect = 2e-05
Identities = 19/111 (17%), Positives = 30/111 (27%), Gaps = 10/111 (9%)
Query: 191 TGRYEYECN--ACGKGFQNKSYLIVHQRVHSTDKPYAC----KTCPRSFKTKQTLLDHEN 244
+G +Y N + HQ + + + L
Sbjct: 8 SGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL 67
Query: 245 RHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKS 295
+ + C +C F + K H + CPVCKK F S
Sbjct: 68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYTE----HTKVCPVCKKEFTSTD 114
Score = 40.3 bits (93), Expect = 2e-04
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 186 HEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENR 245
++ C C F + L H R + C C + F + + LDH +
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCK 122
Query: 246 H 246
Sbjct: 123 K 123
Score = 39.5 bits (91), Expect = 3e-04
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 6/88 (6%)
Query: 133 KPESKSLHKCD----RCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEA 188
PE K L + + + Y + + F C C F S + L +H
Sbjct: 36 TPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIR 95
Query: 189 KHTGRYEYECNACGKGFQNKSYLIVHQR 216
C C K F + + H
Sbjct: 96 YTEH--TKVCPVCKKEFTSTDSALDHVC 121
Score = 36.1 bits (82), Expect = 0.004
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 3/96 (3%)
Query: 250 KPYSCEICGRGFITKGLCKSH-QKIHSGNDNRQYPCPVCKKLFVSKSCNICGQSFTQFSP 308
K Y + + + + K+ +++ + K C +C F+
Sbjct: 30 KRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVS 89
Query: 309 MAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ H R E C +C K F S + + H K
Sbjct: 90 LKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKK 123
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 37.1 bits (85), Expect = 0.001
Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 5/76 (6%)
Query: 209 SYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDH-ENRHMGVK---PYSCEICGRGFITK 264
+ +Q+ + Y CK C H ++ H V Y C C
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 265 GLCKSHQ-KIHSGNDN 279
H K H G +N
Sbjct: 64 DALSEHNLKYHPGEEN 79
Score = 30.5 bits (68), Expect = 0.21
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 140 HKCDRCPKKFSSLAKYNFHV----SNHGVDKPFQCFKCEKRFRSKLGLDEHEAKH 190
++C C + L + FHV N ++ + C +C + L EH K+
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKY 73
Score = 30.1 bits (67), Expect = 0.30
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 158 HVSNHGVDKPFQCFKCEKRFRSKLGLDEH-EAKHTGRYE---YECNACGKGFQNKSYLIV 213
+ N V+ ++C C + H +++H Y C C + L
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 214 HQ-RVHSTDKPYACKTCPRSFKTK 236
H + H ++ + R+ +T
Sbjct: 69 HNLKYHPGEENFKLTMVKRNNQTI 92
Score = 26.3 bits (57), Expect = 7.3
Identities = 11/54 (20%), Positives = 13/54 (24%), Gaps = 4/54 (7%)
Query: 295 SCNICGQSFTQFSPMAIH-KRLHTGER---PYSCELCNKAFVSRSTLMVHKKKH 344
C C + H H Y C CN L H K+
Sbjct: 20 ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKY 73
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 38.6 bits (89), Expect = 0.003
Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 23/134 (17%)
Query: 55 QTIPVTPVLSNGVLVGALTNGVPVNSDDG---DKGGDAQSKSTVVKSDL----IKDPIAS 107
Q+ +P +N V S Q ++ +V S + D S
Sbjct: 10 QSAIASPADTNVVPAKDAPTTNSPPSTTSPNQAAADANQQQAGIVSSQSGPNAVGDSAPS 69
Query: 108 DDNMEDGYMDEPETDINPKEVIDTGKP---------------ESKSLHKCDRCPKKFSSL 152
DG + T + V + KP + S + C+ C +FS++
Sbjct: 70 SSVNNDGDIITRPTSDSIAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTM 129
Query: 153 AKYNFHV-SNHGVD 165
+ + H+ S+H D
Sbjct: 130 SALSEHLRSDHRDD 143
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.003
Identities = 52/304 (17%), Positives = 87/304 (28%), Gaps = 128/304 (42%)
Query: 6 EELQE-------------------FNELCREAYAVHCTEIHSK---------QPTSEPSQ 37
EEL++ +EL R + ++ ++ P++ P +
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTT--LDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 38 DVNYILSHMETYRQMPQQTIPVT-PVLSNGVL------VGALTNGV-PVNSDDGDKGGDA 89
D Y+LS IP++ P++ GV+ V A G P KG
Sbjct: 229 D--YLLS------------IPISCPLI--GVIQLAHYVVTAKLLGFTPGELRSYLKG--- 269
Query: 90 QSKSTVVKSDLIK-DPIASDDNMED------------------GYMDEPETDINPKEVID 130
+T L+ IA D+ E Y P T + P + D
Sbjct: 270 ---ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 131 T-----GKP---------ESKSLHK-CDRCPKKFS-----SLAKYN----FHVSNH---- 162
+ G P + + ++ ++ N VS
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 163 -GVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGK-GFQNKSYLIVHQRVHST 220
G++ + K GLD+ + R K F N +L V HS
Sbjct: 387 YGLNLTLRKAKAPS------GLDQSRIPFSER---------KLKFSN-RFLPVASPFHS- 429
Query: 221 DKPY 224
Sbjct: 430 --HL 431
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 33.6 bits (76), Expect = 0.004
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 246 HMGVKPYSCEICGRGFITKGLCKSHQKIHS 275
G +P+ C IC F TK C H K+H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 31.3 bits (70), Expect = 0.025
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 316 HTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+G+RP+ C +C AF +++ H K H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 25.1 bits (54), Expect = 5.1
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 218 HSTDKPYACKTCPRSFKTKQTLLDHENRH 246
S +P+ C+ C +F TK H H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 33.3 bits (76), Expect = 0.005
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 250 KPYSCEICGRGFITKGLCKSH-QKIHSGN 277
K Y+C +C R F + L H QKIHSGN
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN 29
Score = 28.3 bits (63), Expect = 0.34
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 320 RPYSCELCNKAFVSRSTLMVHKKK 343
+ Y+C LCN+AF R L+ H +K
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQK 24
Score = 26.0 bits (57), Expect = 1.9
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 222 KPYACKTCPRSFKTKQTLLDHENR-HMG 248
K YAC C R+F + L+ H + H G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 32.4 bits (74), Expect = 0.013
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 222 KPYACKTCPRSFKTKQTLLDHENRH 246
+ Y C C R F++ Q L H N H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
Score = 26.3 bits (58), Expect = 1.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDK 222
Y C+ C + F++ L H VH D+
Sbjct: 7 YTCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 25.9 bits (57), Expect = 3.0
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIH 274
+ Y+C C R F + H +H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
Score = 24.7 bits (54), Expect = 7.1
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 320 RPYSCELCNKAFVSRSTLMVHKKKH 344
R Y+C C + F S L H H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 31.3 bits (70), Expect = 0.025
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGER 320
C +CG++FTQ S + H R HTGE+
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 26.7 bits (58), Expect = 1.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 198 CNACGKGFQNKSYLIVHQRVHSTDK 222
C CGK F S LI H R H+ +K
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 26.3 bits (57), Expect = 1.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 320 RPYSCELCNKAFVSRSTLMVHKKKH 344
+P C +C KAF S+L+ H ++H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.9 bits (69), Expect = 0.045
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 188 AKHTGRYEYECNACGKGFQNKSYLIVHQRVHS 219
+ ++CN C K F YL H+R+H+
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 27.1 bits (59), Expect = 1.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 160 SNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHT 191
S+ +K F+C KCEK F L +HE HT
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 25.2 bits (54), Expect = 6.4
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 316 HTGERPYSCELCNKAFVSRSTLMVHKKKH 344
E+ + C C K F L H++ H
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 30.2 bits (67), Expect = 0.059
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 249 VKPYSCEICGRGFITKGLCKSHQKIHSG 276
++PYSC +CG+ F K ++H ++H+G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 26.3 bits (57), Expect = 1.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHS 219
Y C+ CGK F K + H RVH+
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHT 27
Score = 26.3 bits (57), Expect = 1.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 295 SCNICGQSFTQFSPMAIHKRLHTG 318
SC++CG+ F+ M H R+HTG
Sbjct: 5 SCSVCGKRFSLKHQMETHYRVHTG 28
Score = 25.1 bits (54), Expect = 4.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 166 KPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+P+ C C KRF K ++ H HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 24.4 bits (52), Expect = 6.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 320 RPYSCELCNKAFVSRSTLMVHKKKH 344
RPYSC +C K F + + H + H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 24.4 bits (52), Expect = 7.5
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMG 248
+PY+C C + F K + H H G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 31.8 bits (71), Expect = 0.079
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 144 RCPK----KFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEH 186
CP ++ H+ N + F C C K+ RS G+ H
Sbjct: 36 SCPTCQAVGRKTIEGLKKHMENCKQE-MFTCHHCGKQLRSLAGMKYH 81
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 30.3 bits (67), Expect = 0.086
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 316 HTGERPYSCELCNKAFVSRSTLMVHKKKH 344
+GE+PYSC +C F + + H + H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 28.7 bits (63), Expect = 0.33
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 218 HSTDKPYACKTCPRSFKTKQTLLDHENRHMG 248
S +KPY+C C FK K + H H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 28.0 bits (61), Expect = 0.50
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 160 SNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
S +KP+ C C RF+ K + H H G
Sbjct: 3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 27.6 bits (60), Expect = 0.75
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 246 HMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYP 283
G KPYSC +CG F K H + H G+ + P
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGP 42
Score = 25.3 bits (54), Expect = 5.5
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 190 HTGRYEYECNACGKGFQNKSYLIVHQRVHS 219
+G Y C CG F+ K + H R H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 29.6 bits (67), Expect = 0.11
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVK 250
+ + C+ C R+F ++ L H H K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.8 bits (65), Expect = 0.18
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGER 320
C +C ++F + + H R HT E+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.4 bits (64), Expect = 0.24
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSG 276
+ + CE+C R F + K H + H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 26.9 bits (60), Expect = 0.79
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDK 222
+ C C + F + +L H R H+ +K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.5 bits (59), Expect = 1.1
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 166 KPFQCFKCEKRFRSKLGLDEHEAKHTG 192
+ F C C + F + L H HT
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 25.7 bits (57), Expect = 2.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 320 RPYSCELCNKAFVSRSTLMVHKKKH 344
R + CE+C +AF + L H + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 29.9 bits (66), Expect = 0.12
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 160 SNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTG 192
S+ +C +C K FR L EH+A H G
Sbjct: 5 SSGAAKTTSECQECGKIFRHSSLLIEHQALHAG 37
Score = 29.1 bits (64), Expect = 0.20
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 192 GRYEYECNACGKGFQNKSYLIVHQRVHS 219
+ EC CGK F++ S LI HQ +H+
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHA 36
Score = 24.5 bits (52), Expect = 9.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 293 SKSCNICGQSFTQFSPMAIHKRLHTGE 319
+ C CG+ F S + H+ LH GE
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAGE 38
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 29.2 bits (65), Expect = 0.14
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 319 ERPYSCEL--CNKAFVSRSTLMVHKKKH 344
+RPYSC+ C+KAFV L+ HKK H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 24.6 bits (53), Expect = 7.5
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 250 KPYSCEI--CGRGFITKGLCKSHQKIHS 275
+PYSC+ C + F+ H+K H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 29.3 bits (65), Expect = 0.14
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 249 VKPYSCEICGRGFITKGLCKSHQKIHSG 276
+KPY C C R F G + H +IH+G
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTG 28
Score = 27.4 bits (60), Expect = 0.73
Identities = 12/29 (41%), Positives = 12/29 (41%)
Query: 222 KPYACKTCPRSFKTKQTLLDHENRHMGVK 250
KPY C C R F L H H G K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 26.6 bits (58), Expect = 1.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 166 KPFQCFKCEKRFRSKLGLDEHEAKHTG 192
KP+ C C+++F L H HTG
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTG 28
Score = 26.6 bits (58), Expect = 1.4
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 320 RPYSCELCNKAFVSRSTLMVHKKKH 344
+PY C C + F L H + H
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
Score = 25.9 bits (56), Expect = 2.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDK 222
Y C C + F + L H R+H+ +K
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 25.1 bits (54), Expect = 4.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 296 CNICGQSFTQFSPMAIHKRLHTGER 320
C C + F + H R+HTGE+
Sbjct: 6 CIHCQRQFADPGALQRHVRIHTGEK 30
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 29.3 bits (65), Expect = 0.15
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 319 ERPYSCEL--CNKAFVSRSTLMVHKKKH 344
++P+ C C + F + L VHK KH
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 31.7 bits (71), Expect = 0.29
Identities = 7/53 (13%), Positives = 11/53 (20%)
Query: 170 CFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDK 222
KR S H G + + N L + +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 30.2 bits (67), Expect = 0.82
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 311 IHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKH 344
IH+ L GE+ E + + L
Sbjct: 198 IHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 27.5 bits (60), Expect = 6.2
Identities = 10/115 (8%), Positives = 27/115 (23%), Gaps = 10/115 (8%)
Query: 170 CFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVH----------S 219
+ + +D + Y + + QN +R++
Sbjct: 117 SWLIVDKNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGE 176
Query: 220 TDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIH 274
+ + + + + H N G K E + + +
Sbjct: 177 WLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 28.5 bits (64), Expect = 0.32
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 299 CGQSFTQFSPMAIHKRLHTGER 320
CG+ + + S + H R HTGER
Sbjct: 16 CGKVYGKTSHLRAHLRWHTGER 37
Score = 25.4 bits (56), Expect = 3.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 201 CGKGFQNKSYLIVHQRVHSTDK 222
CGK + S+L H R H+ ++
Sbjct: 16 CGKVYGKTSHLRAHLRWHTGER 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 29.7 bits (67), Expect = 0.35
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 284 CPVCKKLF---VSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTL 337
C +CK + V C CG S+ I L + ++C C++ VS L
Sbjct: 16 CLICKDIMTDAVVIPC--CGNSYCD---ECIRTALLESD-EHTCPTCHQNDVSPDAL 66
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 28.0 bits (63), Expect = 0.36
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 299 CGQSFTQFSPMAIHKRLHTGER 320
CG+ FT+ + HKR HTGE+
Sbjct: 10 CGKRFTRSDELQRHKRTHTGEK 31
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.2 bits (62), Expect = 0.44
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGNDNRQ 281
K + C CG F HQ +H G N
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKNSG 42
Score = 28.2 bits (62), Expect = 0.50
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 219 STDKPYACKTCPRSFKTKQTLLDHENRHMGVK 250
S +K + C+ C F +L++H+ HMG K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 27.9 bits (61), Expect = 0.60
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEAKHTGR 193
+K QC +C + F + L EH+ H G+
Sbjct: 10 EKSHQCRECGEIFFQYVSLIEHQVLHMGQ 38
Score = 26.7 bits (58), Expect = 1.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 293 SKSCNICGQSFTQFSPMAIHKRLHTGER 320
S C CG+ F Q+ + H+ LH G++
Sbjct: 12 SHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 26.7 bits (58), Expect = 1.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDK 222
++C CG+ F LI HQ +H K
Sbjct: 13 HQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 26.3 bits (57), Expect = 2.6
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ E+ + C C + F +L+ H+ H
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLH 35
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.55
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 19/45 (42%)
Query: 7 ELQEFNELCREA----YAVHCTEIHSKQPTSEPSQDVNYILSHME 47
E Q +L +A YA S P+ + + ME
Sbjct: 18 EKQALKKL--QASLKLYA----------DDSAPALAIK---ATME 47
Score = 28.8 bits (63), Expect = 1.6
Identities = 6/25 (24%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 215 QRVHSTDKPYACKTCPRSFKTKQTL 239
+++ ++ K YA + P + K T+
Sbjct: 23 KKLQASLKLYADDSAP-ALAIKATM 46
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.6 bits (60), Expect = 0.71
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 193 RYEYECNACGKGFQNKSYLIVHQRVHS 219
R YEC+ C F + +LI HQ+ H+
Sbjct: 10 RKRYECSKCQATFNLRKHLIQHQKTHA 36
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 27.0 bits (59), Expect = 0.96
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHS 219
Y+C C + F KS L HQRVH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
Score = 26.3 bits (57), Expect = 1.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 322 YSCELCNKAFVSRSTLMVHKKKH 344
Y C LC ++FV +S L H++ H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
Score = 26.3 bits (57), Expect = 1.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 252 YSCEICGRGFITKGLCKSHQKIHS 275
Y C +C R F+ K HQ++H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 27.4 bits (61), Expect = 1.5
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 9/61 (14%)
Query: 284 CPVCKKLF---VSKSCNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVH 340
C +CK + V C CG S+ I L + ++C C++ VS L
Sbjct: 18 CLICKDIMTDAVVIPC--CGNSYCD---ECIRTALLESD-EHTCPTCHQNDVSPDALSGP 71
Query: 341 K 341
Sbjct: 72 S 72
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.3 bits (57), Expect = 1.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 166 KPFQCFKCEKRFRSKLGLDEHEAKHTG 192
KP++C +C K L+ H KHTG
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTG 34
Score = 25.2 bits (54), Expect = 5.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 317 TGERPYSCELCNKAFVSRSTLMVHKKKH 344
+ +PY C C+ A ++ L VH +KH
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKH 32
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.4 bits (57), Expect = 1.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 322 YSCELCNKAFVSRSTLMVHKKKH 344
++CE CNK F + +L H + H
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIH 32
Score = 25.6 bits (55), Expect = 3.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 196 YECNACGKGFQNKSYLIVHQRVHSTDK 222
+ C C K F+ K L H R+H+ +K
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 24.4 bits (52), Expect = 9.2
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 295 SCNICGQSFTQFSPMAIHKRLHTGER 320
+C C + F + H R+HT E+
Sbjct: 11 TCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 24.4 bits (52), Expect = 9.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 219 STDKPYACKTCPRSFKTKQTLLDHENRHMGVK 250
S+ K + C+ C + FK K +L H H K
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 25.8 bits (56), Expect = 2.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 320 RPYSCELCNKAFVSRSTLMVHKKKH 344
+PY CE C K FV S L H + H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.9 bits (56), Expect = 2.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 250 KPYSCEICGRGFITKGLCKSHQKIHSGN 277
K + C++CG+ F +KG KSH+ +H+ +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 25.6 bits (55), Expect = 3.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 319 ERPYSCELCNKAFVSRSTLMVHKKKH 344
+ + C++C K F S+ TL HK H
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLH 32
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 27.6 bits (60), Expect = 2.1
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 145 CPK----KFSSLAKYNFHVSN-HGVDKPFQCFKCEKRFRSKLGLDEH 186
CP +L H+ + +C C K+F+SK GL+ H
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYH 73
Score = 27.2 bits (59), Expect = 3.4
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 166 KPFQCFKCEKRFRSKL-GLDEH-EAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKP 223
C C R L GL +H E + +C C K F++K+ L H + KP
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 26.8 bits (58), Expect = 4.4
Identities = 15/66 (22%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
Query: 215 QRVHSTDKPYACKTCPR-SFKTKQTLLDH-ENRHMGVKPYSCEICGRGFITKGLCKSHQK 272
QR C TC + KT L H E C+ C + F +K H
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 273 IHSGND 278
Sbjct: 76 AEHSAK 81
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 28.2 bits (62), Expect = 2.2
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 23/93 (24%)
Query: 141 KCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
C C ++ + K + + H + C C K + S + + + +C
Sbjct: 10 SCTACGQQVNHFQKDSIYR--HPSLQVLICKNCFKYYMSDDISRDSDG-----MDEQCRW 62
Query: 201 CGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSF 233
C +G C C +F
Sbjct: 63 CAEG----------------GNLICCDFCHNAF 79
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 3.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 219 STDKPYACKTCPRSFKTKQTLLDHENRH 246
S+ KP+ C C + ++K L H NRH
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMNRH 32
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 25.2 bits (55), Expect = 3.1
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 194 YEYECNACGKGFQNKSYLIVHQRVHSTDK 222
Y++ C C K F +L +H +H K
Sbjct: 1 YKFACPECPKRFMRSDHLTLHILLHENKK 29
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.9 bits (56), Expect = 3.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 165 DKPFQCFKCEKRFRSKLGLDEHEA 188
DKP+ C C KR++++ GL H A
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYA 28
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
pyrococcus horikoshii OT3, riken structural
genomics/PROT initiative, RSGI; HET: XMP; 2.10A
{Pyrococcus horikoshii} SCOP: c.1.5.1
Length = 486
Score = 28.6 bits (65), Expect = 3.6
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 32 TSEPSQDVNYILSHMETYRQMPQQTIPVTPVLSNGVLVGALTN 74
T P + V++ L ME + I PV+ + +VG +T
Sbjct: 105 TIAPDETVDFALFLMEKHG------IDGLPVVEDEKVVGIITK 141
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 24.9 bits (54), Expect = 4.6
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 194 YEYECNACGKGFQNKSYLIVHQRVHSTDKP 223
Y++ C C K F +L H +H
Sbjct: 1 YKFACPECPKRFMRSDHLSKHITLHELLGE 30
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 27.1 bits (59), Expect = 5.8
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 23/93 (24%)
Query: 141 KCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNA 200
C C ++ + K + + H + C C K + S + + + +C
Sbjct: 16 SCTACGQQVNHFQKDSIYR--HPSLQVLICKNCFKYYMSDDISRDSDG-----MDEQCRW 68
Query: 201 CGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSF 233
C +G LI C C +F
Sbjct: 69 CAEG----GNLIC------------CDFCHNAF 85
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
SCOP: c.1.5.1 d.37.1.1
Length = 491
Score = 27.8 bits (63), Expect = 6.3
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 32 TSEPSQDVNYILSHMETYRQMPQQTI---PVTPVLSNGVLVGALTN 74
P V+ M+ YR I P+ L+N LVG +TN
Sbjct: 102 FLTPEHKVSEAEELMQRYR------ISGVPIVETLANRKLVGIITN 141
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.3 bits (60), Expect = 7.0
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 9/33 (27%)
Query: 277 NDNRQYPCPVCK----KLFVSKS-----CNICG 300
N N CP CK K+ S C +CG
Sbjct: 17 NLNIVLTCPECKVYPPKIVERFSEGDVVCALCG 49
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 26.0 bits (56), Expect = 7.0
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 128 VIDTGKPESKSLHKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKR 176
++ G S ++C C K S A+ H++ H + + + E+R
Sbjct: 14 ILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERR 62
>2xz8_A Peptidoglycan-recognition protein LF; immune system, innate
immunity, PGRP-LF; HET: PG4; 1.94A {Drosophila
melanogaster}
Length = 150
Score = 26.8 bits (59), Expect = 7.9
Identities = 7/76 (9%), Positives = 18/76 (23%), Gaps = 13/76 (17%)
Query: 209 SYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVK-----PYSCEICGRGFIT 263
+ + +C + + +N H+ Y+ G I
Sbjct: 32 ESVRFV---AT-----NTPSCFTQAECTFRVRLLQNWHIESNGYKDINYNFVAAGDENIY 83
Query: 264 KGLCKSHQKIHSGNDN 279
+ H + +
Sbjct: 84 EARGWDHSCEPPKDAD 99
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid, TIM
barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus
anthracis} PDB: 3tsd_A* 3tsb_A*
Length = 511
Score = 27.1 bits (61), Expect = 9.9
Identities = 14/46 (30%), Positives = 15/46 (32%), Gaps = 9/46 (19%)
Query: 32 TSEPSQDVNYILSHMETYRQMPQQTI---PVTPVLSNGVLVGALTN 74
P V M YR I PV L LVG +TN
Sbjct: 125 FLTPEHQVYDAEHLMGKYR------ISGVPVVNNLDERKLVGIITN 164
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.411
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,983,231
Number of extensions: 284411
Number of successful extensions: 2444
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1914
Number of HSP's successfully gapped: 1026
Length of query: 344
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 250
Effective length of database: 4,077,219
Effective search space: 1019304750
Effective search space used: 1019304750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)