RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14390
(64 letters)
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase,
oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP:
c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A*
1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Length = 564
Score = 42.0 bits (99), Expect = 2e-06
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 1 MQTEGSTVQEARDRIWMMDIDGLLAKGRVEVVRGNGKYY 39
M G + QEA+ +IWM D GLL KGR + + +
Sbjct: 307 MVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPF 345
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent,
NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET:
NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB:
2aw5_A
Length = 555
Score = 42.0 bits (99), Expect = 2e-06
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 1 MQTEGSTVQEARDRIWMMDIDGLLAKGR 28
MQ EG + +EA RIWM+D GL+ KGR
Sbjct: 305 MQKEGVSKEEAIKRIWMVDSKGLIVKGR 332
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative
decarboxylase, rossmann fold, MAla dehydrogenase; HET:
NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB:
1llq_A*
Length = 605
Score = 39.7 bits (93), Expect = 1e-05
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 1 MQTEGSTVQEARDRIWMMDIDGLLAKGR 28
MQ EG + +EA +RI++MDIDGL+ K R
Sbjct: 343 MQNEGISKEEACNRIYLMDIDGLVTKNR 370
>3k3w_A Penicillin G acylase; hydrolase; 3.31A {Alcaligenes faecalis}
PDB: 3ml0_A
Length = 196
Score = 26.7 bits (59), Expect = 0.45
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 11 ARDRIWMMDIDGLLAKGR 28
A+DR++ MD+ G
Sbjct: 34 AQDRLFQMDMARRSFVGT 51
>1cp9_A Penicillin amidohydrolase; antibiotic resistance, NTN-hydrolase
fold, N-terminal pyroglutamate, penicillin binding
protein; 2.50A {Providencia rettgeri} SCOP: d.153.1.2
Length = 205
Score = 26.3 bits (58), Expect = 0.53
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 11 ARDRIWMMDIDGLLAKGRV 29
A+DR++ M++ +G V
Sbjct: 34 AQDRLFQMEMAKRSTQGTV 52
>1gk9_A Penicillin G acylase alpha subunit; antibiotic resistance,
amidase, NTN-hydrolase,; 1.3A {Escherichia coli} SCOP:
d.153.1.2 PDB: 1e3a_A 1gkf_A 1pnk_A 1ai5_A* 1ai6_A*
1ai7_A 1ajn_A* 1ai4_A* 1ajp_A* 1ajq_A* 1fxv_A* 1gm8_A*
1h2g_A 1fxh_A 1pnl_A* 1pnm_A* 1k7d_A* 1k5q_A* 1k5s_A*
1jx9_A* ...
Length = 260
Score = 26.5 bits (58), Expect = 0.61
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 11 ARDRIWMMDIDGLLAKGR 28
A+DR++ M++ +G
Sbjct: 36 AQDRLFQMEMARRSTQGT 53
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 25.2 bits (54), Expect = 1.8
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 26 KGRVEVVRGNGKYYSLIQELNLNRPAYLA 54
R+EV R NG ++ +L P +
Sbjct: 413 TDRIEVTRLNGTMRKILISEDLEEPRAIV 441
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural
genomics, PSI-2, protein structure initiative; 2.60A
{Vibrio parahaemolyticus rimd 2210633}
Length = 396
Score = 24.9 bits (53), Expect = 2.3
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 1 MQTEGSTVQEARDRIWMMDIDG 22
R+W+++ DG
Sbjct: 204 GFCHEGPHDLVDARMWLVNEDG 225
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 24.8 bits (53), Expect = 2.5
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 26 KGRVEVVRGNGKYYSLIQELNLNRPAYLA 54
+ V R +G+ ++ + +RP +
Sbjct: 410 TNVINVTRLDGRSVGVVLKGEQDRPRAVV 438
>3l91_A Acyl-homoserine lactone acylase PVDQ subunit ALPH; pyoverdine,
NTN hydrolase, quorum sensing, ZY hydrolase; HET: OCA;
1.66A {Pseudomonas aeruginosa} PDB: 2wyb_A* 2wyd_A*
2wyc_A 2wye_A* 3l94_A* 3src_A* 3srb_A* 3sra_A*
Length = 170
Score = 24.4 bits (53), Expect = 2.9
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 11 ARDRIWMMDIDGLLAKGR 28
ARD ++ + + A+G
Sbjct: 39 ARDNACLLAEEIVTARGE 56
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A
{Yersinia enterocolitica subsp}
Length = 388
Score = 24.4 bits (52), Expect = 2.9
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 9 QEARDRIWMMDIDG 22
R+W+++ DG
Sbjct: 212 DLVDARMWLINEDG 225
>1fm2_A Glutaryl 7-aminocephalosporanic acid acylase; cephalosporin
acylase, antibiotics, penicillin acylase, N- terminal
hydrolase; 2.00A {Brevundimonas diminuta} SCOP:
d.153.1.2 PDB: 1ghd_A 3jtq_A 3jtr_A 2adv_A 2ae3_A
2ae5_A 2ae4_A 1or0_A 1jw0_A 1jvz_A 1gk1_A 1gk0_A
Length = 169
Score = 24.3 bits (53), Expect = 3.0
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 11 ARDRIWMMDIDGLLAKGR 28
AR + A+G+
Sbjct: 47 ARSHGDNILRLYGEARGK 64
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba
histolytica}
Length = 487
Score = 24.1 bits (53), Expect = 3.4
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 12 RDRIWMMDIDGLLAKGRVEVVRGNGKYY 39
+I M D G L GR ++ + Y
Sbjct: 245 PKKIVMFDSKGSLHNGREDIKKDTRFYR 272
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase
(decarboxylating)); hypothetical protein, structural
genomics, PSI; 2.50A {Streptococcus pyogenes}
Length = 398
Score = 24.0 bits (53), Expect = 4.0
Identities = 2/16 (12%), Positives = 8/16 (50%)
Query: 15 IWMMDIDGLLAKGRVE 30
+ ++D G++ +
Sbjct: 215 VTVVDKFGIINEQEAA 230
>1keh_A Precursor of cephalosporin acylase; glutaryl-7-ACA, hydrolase;
2.50A {Brevundimonas diminuta} SCOP: d.153.1.2 PDB:
3s8r_A 1oqz_A
Length = 689
Score = 23.8 bits (51), Expect = 4.4
Identities = 11/60 (18%), Positives = 16/60 (26%), Gaps = 12/60 (20%)
Query: 11 ARDRIWMMDIDGLLAKGRV------------EVVRGNGKYYSLIQELNLNRPAYLAWLVA 58
AR + A+G+ + NG Q P + A L A
Sbjct: 47 ARSHGDNILRLYGEARGKGAEYWGPDYEQTTVWLLTNGVPERAQQWYAQQSPDFRANLDA 106
>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A
{Staphylococcus aureus subsp} SCOP: e.60.1.1
Length = 418
Score = 24.0 bits (51), Expect = 4.4
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 18 MDIDGLLAKGRVEVVRGNGK 37
+ I G+ G E+V NG
Sbjct: 394 LTIYGIFEDGSKELVFENGN 413
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme,
structural genomics, JCS protein structure initiative,
PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3
PDB: 2hae_A*
Length = 388
Score = 24.0 bits (53), Expect = 4.5
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 15 IWMMDIDGLLAKGRVE 30
+ +D G+L + E
Sbjct: 219 VVAVDRKGILNENDPE 234
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 23.6 bits (52), Expect = 5.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 20 IDGLLAKGRVEVVRGNGK 37
I+GL K +V V+G GK
Sbjct: 102 IEGLFKKNKVTYVKGYGK 119
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 23.6 bits (52), Expect = 5.6
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 20 IDGLLAKGRVEVVRGNGK 37
I+ L K +V +GNG
Sbjct: 102 IELLFKKNKVTYYKGNGS 119
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 23.6 bits (51), Expect = 5.6
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 15 IWMMDIDGLL--AKGRVEVVRGNGKYY 39
+ + D+ L K +EVV KYY
Sbjct: 75 VLLADLHAFLDNMKAPLEVVNYRAKYY 101
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 23.7 bits (52), Expect = 5.8
Identities = 2/18 (11%), Positives = 5/18 (27%)
Query: 20 IDGLLAKGRVEVVRGNGK 37
+ + +G K
Sbjct: 95 KRNMSQYETLTFYKGYVK 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.422
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,009,224
Number of extensions: 46565
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 22
Length of query: 64
Length of database: 6,701,793
Length adjustment: 35
Effective length of query: 29
Effective length of database: 5,724,558
Effective search space: 166012182
Effective search space used: 166012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)