RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14390
         (64 letters)



>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic
          enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
          Length = 308

 Score = 35.3 bits (81), Expect = 1e-04
 Identities = 16/28 (57%), Positives = 22/28 (78%)

Query: 1  MQTEGSTVQEARDRIWMMDIDGLLAKGR 28
          MQ EG + +EA +RI++MDIDGL+ K R
Sbjct: 48 MQNEGISKEEACNRIYLMDIDGLVTKNR 75


>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic
          enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
          Length = 298

 Score = 31.9 bits (72), Expect = 0.003
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 1  MQTEGSTVQEARDRIWMMDIDGLLAKGR 28
          MQ EG + +EA  RIWM+D  GL+ KGR
Sbjct: 48 MQKEGVSKEEAIKRIWMVDSKGLIVKGR 75


>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic
          enzyme {Human (Homo sapiens) [TaxId: 9606]}
          Length = 294

 Score = 31.5 bits (71), Expect = 0.003
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 1  MQTEGSTVQEARDRIWMMDIDGLLAKGR 28
          M   G + QEA+ +IWM D  GLL KGR
Sbjct: 48 MVENGLSEQEAQKKIWMFDKYGLLVKGR 75


>g1cp9.1 d.153.1.2 (A:,B:) Penicillin acylase {Providencia
          rettgeri [TaxId: 587]}
          Length = 750

 Score = 25.8 bits (55), Expect = 0.38
 Identities = 5/18 (27%), Positives = 11/18 (61%)

Query: 11 ARDRIWMMDIDGLLAKGR 28
          A+DR++ M++     +G 
Sbjct: 34 AQDRLFQMEMAKRSTQGT 51


>g1gk9.1 d.153.1.2 (A:,B:) Penicillin acylase {Escherichia coli
          [TaxId: 562]}
          Length = 765

 Score = 25.8 bits (55), Expect = 0.40
 Identities = 5/18 (27%), Positives = 11/18 (61%)

Query: 11 ARDRIWMMDIDGLLAKGR 28
          A+DR++ M++     +G 
Sbjct: 35 AQDRLFQMEMARRSTQGT 52


>d1zjca1 e.60.1.1 (A:3-415) Aminopeptidase S, AMPS {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 413

 Score = 25.0 bits (54), Expect = 0.74
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 18  MDIDGLLAKGRVEVVRGNGKY 38
           + I G+   G  E+V  NG +
Sbjct: 389 LTIYGIFEDGSKELVFENGNW 409


>g1or0.1 d.153.1.2 (A:,B:) Cephalosporin acylase {Pseudomonas sp.,
          glutarylamidase [TaxId: 306]}
          Length = 674

 Score = 24.5 bits (52), Expect = 1.1
 Identities = 4/18 (22%), Positives = 7/18 (38%)

Query: 11 ARDRIWMMDIDGLLAKGR 28
          AR     +      A+G+
Sbjct: 40 ARSHGDNILRLYGEARGK 57


>d2ayia1 e.60.1.1 (A:3-408) Aminopeptidase T {Thermus thermophilus
           [TaxId: 274]}
          Length = 406

 Score = 23.5 bits (50), Expect = 2.4
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 18  MDIDGLLAKGRVEVVRGNGKY 38
           MD+DGL   G    +   G++
Sbjct: 384 MDVDGLYEDGTRTPLMRRGRW 404


>d1hi9a_ c.99.1.1 (A:) Zn-dependent D-aminopeptidase DppA
          {Bacillus subtilis [TaxId: 1423]}
          Length = 274

 Score = 23.2 bits (50), Expect = 2.4
 Identities = 4/19 (21%), Positives = 13/19 (68%)

Query: 28 RVEVVRGNGKYYSLIQELN 46
            +++ G+ K +S+++ L+
Sbjct: 74 EADLISGDVKPFSMVEGLD 92


>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme)
          {Thermotoga maritima [TaxId: 2336]}
          Length = 222

 Score = 23.1 bits (49), Expect = 3.0
 Identities = 4/23 (17%), Positives = 9/23 (39%)

Query: 8  VQEARDRIWMMDIDGLLAKGRVE 30
          +      +  +D  G+L +   E
Sbjct: 46 LDLGVKNVVAVDRKGILNENDPE 68


>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase
           {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
          Length = 144

 Score = 22.5 bits (48), Expect = 5.2
 Identities = 4/14 (28%), Positives = 10/14 (71%)

Query: 39  YSLIQELNLNRPAY 52
             ++++L+L +P Y
Sbjct: 107 GVIVRDLDLKKPIY 120


>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase
           alpha-subunit, N-terminal domain {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 334

 Score = 22.3 bits (46), Expect = 6.5
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query: 37  KYYSLIQELNLNRPAYLAWLVARL 60
           +Y+S ++ ++  R AYL  L ++ 
Sbjct: 297 QYFSTLKAVDPMRAAYLDDLRSKF 320


>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase
           {Escherichia coli [TaxId: 562]}
          Length = 152

 Score = 22.1 bits (47), Expect = 6.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 37  KYYSLIQELNLNRPAY 52
           + Y LIQ L+L  P Y
Sbjct: 105 RPYGLIQMLDLLHPIY 120


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0456    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 243,631
Number of extensions: 8625
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 14
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)