BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14392
(164 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|193699878|ref|XP_001950597.1| PREDICTED: peptide deformylase, mitochondrial-like [Acyrthosiphon
pisum]
Length = 213
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I MK++MK+ +L GL+APQVG+P ++F++ FP P FS+ +I M+ + VWIN
Sbjct: 55 LIYIMKSLMKKSNLIGLAAPQVGIPFQIFVIHFPRPSHYFSKEEILLKGMEHVENQVWIN 114
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE+K+L++ +KVT E CAS K A VPRY++V LTG+DE G+ + A+ W ARI+QH
Sbjct: 115 PELKVLNH-EKVTFNESCASFKGYSADVPRYKRVLLTGIDENGEKKTLDAKEWTARIVQH 173
Query: 124 EMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
EMDHL+G++++D M+ SL C W IN G +ELRY
Sbjct: 174 EMDHLNGVMYSDRMVLNSLCCTGWHTINQFQGFVELRY 211
>gi|91092264|ref|XP_967363.1| PREDICTED: similar to N-formylmethionylaminoacyl-tRNA deformylase,
putative [Tribolium castaneum]
gi|270001218|gb|EEZ97665.1| hypothetical protein TcasGA2_TC016210 [Tribolium castaneum]
Length = 223
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 105/162 (64%), Gaps = 2/162 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPE-ESFSEGDIKKFEMQAFPHM 59
+K +I +MKNVMK + GLSAPQVG+PL+LF+V +S + K EM+ P
Sbjct: 60 IKFLINRMKNVMKNHNSVGLSAPQVGVPLQLFLVECNAKHLNEYSPQEQKVKEMKVVPFK 119
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V INP++KI DY K+T +E CAS+K A+VPRY+ ++L DE + GW AR
Sbjct: 120 VVINPQIKITDY-TKLTFVESCASVKGFHAEVPRYKSLKLEAFDEENQKFEMELTGWPAR 178
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
I+QHE+DHL+G ++TD M KSL C CWQ+IN + G +EL Y
Sbjct: 179 IVQHEVDHLNGKIYTDIMDRKSLACSCWQEINERGGKIELPY 220
>gi|321463123|gb|EFX74141.1| hypothetical protein DAPPUDRAFT_307445 [Daphnia pulex]
Length = 234
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP-EESFSEGDIKKFEMQAFPHM 59
+K I+L ++ VMK + G+SAPQ+G+PLR+ ++ PD E F K E+ P
Sbjct: 72 IKNILLVLRGVMKHYKAIGISAPQIGIPLRIIMIEIPDSLVEKFGPETCKTREIVPTPFK 131
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V+INP M++ D+K K E C SLK + A VPRYR V + G + G P W A GWAAR
Sbjct: 132 VFINPVMQVKDFK-KTLFPEACESLKGISAIVPRYRAVHVKGYEYDGSPTEWDATGWAAR 190
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
I+QHEMDHLDG ++TD M KSL+ W+ IN+ G + ++Y
Sbjct: 191 IVQHEMDHLDGQIYTDIMESKSLQVDLWKKINVHQGKILIKY 232
>gi|347970782|ref|XP_310421.4| AGAP003861-PA [Anopheles gambiae str. PEST]
gi|333466829|gb|EAA06035.4| AGAP003861-PA [Anopheles gambiae str. PEST]
Length = 232
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 100/156 (64%), Gaps = 2/156 (1%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP-EESFSEGDIKKFEMQAFPHMVWINPE 65
+ VM+ + GL+APQ+GL LR F++ F D + +++ D K EM+ P + +NPE
Sbjct: 75 HLTKVMRAYRCVGLAAPQLGLSLRAFVMEFKDELRDQYTKADYKLREMEPLPLTILLNPE 134
Query: 66 MKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEM 125
+K+L+Y +KV E C S++ +A VPRYR++ L G D TG GW ARI QHEM
Sbjct: 135 LKVLNY-EKVIHTEACESVRGYRADVPRYREILLQGFDATGNRQELRLSGWNARIAQHEM 193
Query: 126 DHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
DHL+G+++TD M KSL C CWQ +N ++G ++L +
Sbjct: 194 DHLNGIVYTDIMNRKSLTCTCWQAVNAKSGRIQLSF 229
>gi|170050375|ref|XP_001861255.1| peptide deformylase, mitochondrial [Culex quinquefasciatus]
gi|167872016|gb|EDS35399.1| peptide deformylase, mitochondrial [Culex quinquefasciatus]
Length = 236
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 107/171 (62%), Gaps = 10/171 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP-EESFSEGDIKKFEMQAFP-- 57
++ ++ M +VM+++ GL+APQ+G+ LR+ ++ F D + ++ + K EM P
Sbjct: 65 VRFLVQAMIDVMRKYSCVGLAAPQIGISLRILVMEFKDKLRDEYTSAEYKIKEMDTLPLT 124
Query: 58 ------HMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSW 111
+V INPE+K+ +Y+ K + E CAS+K A+VPRY +V L+GLDE GK
Sbjct: 125 VGRPTFMVVLINPELKVTNYEKK-SFTEACASVKGFSAEVPRYSEVLLSGLDENGKSKEL 183
Query: 112 TAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYY 162
T +GW ARI QHEMDHLDG+++TD M K+ C CWQ +N G +++ ++
Sbjct: 184 TLKGWNARIAQHEMDHLDGVIYTDVMDRKTFACSCWQAVNANYGRVQIAFH 234
>gi|157127011|ref|XP_001654759.1| N-formylmethionylaminoacyl-tRNA deformylase, putative [Aedes
aegypti]
gi|108884464|gb|EAT48689.1| AAEL000279-PA, partial [Aedes aegypti]
Length = 243
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP-EESFSEGDIKKFEMQAFPHM 59
+K ++ M +VM+++D GL+APQ+G+ L++ ++ F D ++ ++ + K EM+ P
Sbjct: 80 VKYLVKHMVHVMRKYDCVGLAAPQIGISLKILVMEFEDRLKKHYTNAEYKIKEMETLPLT 139
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V INPEMKI +Y +K++ E CAS+K +V RY V L+GLDE G+ +GW AR
Sbjct: 140 VMINPEMKITNY-EKISFPESCASVKGYSGEVARYAGVLLSGLDENGQSKEMELKGWNAR 198
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYY 162
I QHEMDHL+G+++TD M S C CW +N +G + + ++
Sbjct: 199 IAQHEMDHLNGVVYTDVMKRDSFTCTCWHAVNENHGRVRISFH 241
>gi|52345870|ref|NP_001004979.1| peptide deformylase (mitochondrial) precursor [Xenopus (Silurana)
tropicalis]
gi|49522476|gb|AAH75522.1| peptide deformylase like protein [Xenopus (Silurana) tropicalis]
gi|89268627|emb|CAJ82379.1| peptide deformylase like protein [Xenopus (Silurana) tropicalis]
Length = 239
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 99/151 (65%), Gaps = 2/151 (1%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMV 60
+ ++ QM V++ GLSAPQ+G+PLR+ VAFP +++ EM FP +
Sbjct: 89 QAVVNQMVRVLRAGCCVGLSAPQIGVPLRILAVAFPQQMYQAVPPEVRNAREMSPFPLQI 148
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INPEM+I+D + ++ EGC+S++ A VPRY V+L G++ G+ +W A+GWAARI
Sbjct: 149 FINPEMRIVDSR-TLSFPEGCSSVQGFSAVVPRYYAVELQGMNPKGEHVTWQAQGWAARI 207
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
IQHEMDHLDG+L+ D M P++ + W ++N
Sbjct: 208 IQHEMDHLDGVLYIDKMDPRTFVNISWMEVN 238
>gi|168693535|ref|NP_001108286.1| peptide deformylase (mitochondrial) [Xenopus laevis]
gi|163916521|gb|AAI57494.1| LOC100137680 protein [Xenopus laevis]
Length = 240
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 100/151 (66%), Gaps = 2/151 (1%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMV 60
+ I+ Q+ V+ G+SAPQ+G+PLR+ VAFP+ ++++ EM FP +
Sbjct: 90 QAIVNQLVRVLSAGCCVGISAPQLGVPLRILAVAFPEQMCQAVPPEVRQAREMSPFPLQI 149
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INPEM+IL+ ++ EGC+S++ A VPRY V+++GL+ G+ +W A+GWAARI
Sbjct: 150 FINPEMRILN-SQTLSFPEGCSSVQGFSAVVPRYYAVEISGLNPKGEHITWQAQGWAARI 208
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
IQHEMDHLDG+L+ D M P++ + W ++N
Sbjct: 209 IQHEMDHLDGVLYIDKMDPRTFVNISWMEVN 239
>gi|357613198|gb|EHJ68366.1| hypothetical protein KGM_14914 [Danaus plexippus]
Length = 162
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 102/154 (66%), Gaps = 2/154 (1%)
Query: 3 IIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPE-ESFSEGDIKKFEMQAFPHMVW 61
+++ +K V+ ++ G++APQ+G+ +R+ ++ + + S S IK+ ++ A P V+
Sbjct: 1 MVVQALKYVLYKYGSVGMAAPQIGVNMRVIVLRHTEKQIASLSSELIKQRQISAVPLTVF 60
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP +K++DY+ KV E C S+++ A V RY++VQ++G DE G+ S +GW ARI
Sbjct: 61 INPILKVVDYQ-KVIHPEACESVRAFSADVARYKEVQVSGYDEEGEAISKVFKGWGARIA 119
Query: 122 QHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
QHEMDHLDG L+TD M K+L C CW+++NL G
Sbjct: 120 QHEMDHLDGKLYTDIMDRKTLLCSCWEEVNLSKG 153
>gi|195107440|ref|XP_001998320.1| GI23900 [Drosophila mojavensis]
gi|193914914|gb|EDW13781.1| GI23900 [Drosophila mojavensis]
Length = 234
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP-EESFSEGDIKKFEMQAFPHM 59
++ I+ +M +V++++D G++APQ+G+ LR+ + F ++ E + +M P
Sbjct: 72 IRAIVDRMVHVLRKYDCVGVAAPQIGVSLRIIAMEFRRGIKKELPEAMYRARQMSELPLT 131
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V+INP + + +Y K EGC S++ A+V RY V+L+GLD G+P S GW AR
Sbjct: 132 VFINPRLSVTNY-TKHKHPEGCMSVRGFSAEVERYEAVKLSGLDREGEPLSLELSGWNAR 190
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYY 162
I QHEMDHLDG L+TD M + C CW+ +N ++G +E+ +Y
Sbjct: 191 IAQHEMDHLDGKLYTDHMDRSTFTCTCWETVNTKSGRVEIPFY 233
>gi|195389911|ref|XP_002053615.1| GJ23993 [Drosophila virilis]
gi|194151701|gb|EDW67135.1| GJ23993 [Drosophila virilis]
Length = 234
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 2/163 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP-EESFSEGDIKKFEMQAFPHM 59
++ I+ QM +V+++FD G++APQ+G+ LR+ + F ++ SE K +M P
Sbjct: 72 VQAIVDQMVHVLRKFDCVGIAAPQIGISLRIIAMEFRRSIKQDLSEATYKARQMSELPLT 131
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V INP++ + +Y K EGC S++ A+V RY V+L+G++ G GW AR
Sbjct: 132 VLINPKLTVTNY-TKHKHPEGCMSVRGYSAEVERYEGVKLSGVNRQGAHSELELSGWNAR 190
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYY 162
I QHEMDHLDG L+TD M + C CW+ +N ++G +E+ +Y
Sbjct: 191 IAQHEMDHLDGKLYTDHMDRSTFTCTCWETVNTKSGRVEIPFY 233
>gi|322784370|gb|EFZ11341.1| hypothetical protein SINV_03231 [Solenopsis invicta]
Length = 239
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 96/160 (60%), Gaps = 2/160 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKK-FEMQAFPHMVWI 62
+I ++ NVM+ +D +GLS PQ+GLP ++F + + E ++K EM P ++I
Sbjct: 78 VIKRLINVMRAYDAYGLSGPQIGLPWQIFAIECTEKTMKGVEESVRKAHEMNVVPMTIFI 137
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NPE+K++DY +T E CAS++ A VPR +V++T L+ + + +W A GW+ARI Q
Sbjct: 138 NPELKVIDY-TPITLYEECASIQGYSAAVPRAYEVEITALNASAEQFTWRARGWSARIAQ 196
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYY 162
HE DHL G L+ + M ++ C W IN G + L Y+
Sbjct: 197 HEYDHLQGKLYIEKMDVRTFHCTAWDKINKNKGKVRLSYW 236
>gi|311257108|ref|XP_003126954.1| PREDICTED: peptide deformylase, mitochondrial-like [Sus scrofa]
Length = 249
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 2/152 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHM 59
++ ++ ++ VM+R GLSAPQ+G+PL++ + FPD +++ +M+ FP
Sbjct: 98 LQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLALEFPDALFHACAPRLREIRQMEPFPLH 157
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V++NP +++LD + VT EGC S+ A VPR++ VQ++GLD G+P W A GWAAR
Sbjct: 158 VFVNPSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPRGEPVVWQASGWAAR 216
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
IIQHEMDHL GLLF D M K+ + W ++N
Sbjct: 217 IIQHEMDHLQGLLFIDKMDSKTFTNIHWMEVN 248
>gi|195055504|ref|XP_001994657.1| GH17361 [Drosophila grimshawi]
gi|193892420|gb|EDV91286.1| GH17361 [Drosophila grimshawi]
Length = 234
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 97/160 (60%), Gaps = 2/160 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP-EESFSEGDIKKFEMQAFPHMVWI 62
I+ QM +V+++FD G++APQ+G+ LR+ + F ++ S+ K+ +M P V I
Sbjct: 75 IVDQMVHVLRKFDCVGIAAPQIGVSLRIIAMEFRRSIKKDLSDATYKRRQMSELPLTVLI 134
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP++ + +Y K EGC S++ A+V RY V+L+GLD G GW ARI Q
Sbjct: 135 NPQLTVTNY-TKHKHPEGCMSVRGFSAEVERYEGVKLSGLDRQGVHSELELSGWNARIAQ 193
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYY 162
HEM+HLDG L+TD M + C CW+ +N ++G +E+ +Y
Sbjct: 194 HEMEHLDGKLYTDHMDRSTFMCTCWEAVNTKSGRVEIPFY 233
>gi|195499829|ref|XP_002097113.1| GE24678 [Drosophila yakuba]
gi|194183214|gb|EDW96825.1| GE24678 [Drosophila yakuba]
Length = 238
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 97/163 (59%), Gaps = 2/163 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP-EESFSEGDIKKFEMQAFPHM 59
+K I+ +M V+++FD G++APQ+G+ LR+ + F + E + +M P
Sbjct: 76 LKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGRIRKELPEAVYQTRQMSELPLT 135
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V+INP + + +Y K+ EGC S++ A+V R+ V+LTGLD+ G GW AR
Sbjct: 136 VFINPVLTVTNY-TKLKHPEGCMSVRGYSAEVERFEGVKLTGLDQQGNQSELALSGWNAR 194
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYY 162
I QHEMDHL+G L+TD M + C CW+ +N ++G +E+ +Y
Sbjct: 195 IAQHEMDHLEGKLYTDHMDRSTFACTCWEAVNTKSGRVEIPFY 237
>gi|348503756|ref|XP_003439429.1| PREDICTED: peptide deformylase, mitochondrial-like [Oreochromis
niloticus]
Length = 257
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMV 60
+I M VM++ + GLSAPQ+G+PLR+ + +P E S + +++ +Q P +
Sbjct: 109 VIKTMVAVMRKLECVGLSAPQIGVPLRILALEYPQKMFEESSPATREVRGLSVQ--PLRI 166
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
++NP++++LD + V E C S+ A VPRY V+L+GL+ETG+ +W A GW+ARI
Sbjct: 167 FVNPQLRVLDSRT-VLFQEACESISGFSATVPRYLSVELSGLNETGEAVTWQASGWSARI 225
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
+QHEMDHLDG+L+ D M K+ + WQ N
Sbjct: 226 VQHEMDHLDGVLYIDRMDTKTFININWQAHN 256
>gi|307181864|gb|EFN69304.1| Peptide deformylase, mitochondrial [Camponotus floridanus]
Length = 238
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 95/159 (59%), Gaps = 2/159 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKK-FEMQAFPHMVWI 62
+I + N+M+ +D G+S PQ+GLP ++F + S+ IKK +EM+ P ++I
Sbjct: 77 VITHLINIMRSYDACGMSGPQIGLPWQIFAIEHTMEHMKTSDEVIKKAYEMEVIPVTIFI 136
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NPE+KI+D+ + EGC S++ A VPR ++++T L+ + + +W GW+ARI Q
Sbjct: 137 NPELKIIDH-TPIILYEGCESVRGYSAAVPRAYEIEITALNASAEQFTWRGRGWSARIAQ 195
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
HE DHL G L+ D M + +C W+ IN +G + L Y
Sbjct: 196 HEYDHLQGELYIDKMDMSTFQCTAWEKINKNDGKIHLNY 234
>gi|195330061|ref|XP_002031727.1| GM26160 [Drosophila sechellia]
gi|194120670|gb|EDW42713.1| GM26160 [Drosophila sechellia]
Length = 238
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 97/163 (59%), Gaps = 2/163 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP-EESFSEGDIKKFEMQAFPHM 59
+K I+ +M V+++FD G++APQ+G+ LR+ + F + E + +M P
Sbjct: 76 IKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGRIRKELPEAVYQARQMSELPLT 135
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V+INP + + +Y K+ EGC S++ A+V R+ V+LTGLD+ G GW AR
Sbjct: 136 VFINPVLTVTNY-SKLKHPEGCMSVRGYSAEVERFEGVKLTGLDQLGNQSELALSGWNAR 194
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYY 162
I QHEMDHL+G L+TD M + C CW+ +N ++G +E+ +Y
Sbjct: 195 IAQHEMDHLEGKLYTDHMDRSTFACTCWEAVNTKSGRVEIPFY 237
>gi|293355230|ref|XP_001073696.2| PREDICTED: peptide deformylase, mitochondrial-like [Rattus
norvegicus]
gi|392334370|ref|XP_003753154.1| PREDICTED: peptide deformylase, mitochondrial-like [Rattus
norvegicus]
Length = 231
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 97/152 (63%), Gaps = 2/152 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPE-ESFSEGDIKKFEMQAFPHM 59
++ ++ Q+ VM+R GLSAPQ+G+PL++ ++ FPD +FS + +M+ FP
Sbjct: 80 LQRLVEQLVQVMRRRGCVGLSAPQLGVPLQVLVLEFPDRLFRAFSPRLRELRQMEPFPLR 139
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V +NP +++LD + VT EGC S+ A VPR++ VQ++GLD G+P W+A GW AR
Sbjct: 140 VLVNPSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTAR 198
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
IIQHEMDHL G LF D M + + W ++N
Sbjct: 199 IIQHEMDHLHGCLFIDKMDSGTFTNLHWMEVN 230
>gi|195157968|ref|XP_002019866.1| GL12633 [Drosophila persimilis]
gi|194116457|gb|EDW38500.1| GL12633 [Drosophila persimilis]
Length = 238
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP-EESFSEGDIKKFEMQAFPHM 59
++ I+ QM V+++++ G++APQ+G+ LR+ + F ++ E + +M P
Sbjct: 76 IEAIVEQMVKVLRKYNCVGIAAPQIGVSLRIIAMEFKKSLQKEMPEAVYQARQMSELPLT 135
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V INP + + +Y K+ EGC S++ A+V R+ V+L+GLD++ K + GW AR
Sbjct: 136 VMINPVLTVTNY-SKLKHPEGCMSVRGFSAEVERFEGVKLSGLDKSSKQNDLILSGWNAR 194
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYY 162
I QHEMDHLDG L+TD M + C CW+ +N ++G +E+ +Y
Sbjct: 195 IAQHEMDHLDGKLYTDQMDRSTFSCTCWEAVNTKSGRVEIPFY 237
>gi|125778498|ref|XP_001360007.1| GA16144 [Drosophila pseudoobscura pseudoobscura]
gi|54639757|gb|EAL29159.1| GA16144 [Drosophila pseudoobscura pseudoobscura]
Length = 238
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP-EESFSEGDIKKFEMQAFPHM 59
++ I+ QM V+++++ G++APQ+G+ LR+ + F ++ E + +M P
Sbjct: 76 IEAIVEQMVKVLRKYNCVGIAAPQIGVSLRIIAMEFKKSLQKEMPEAVYQARQMSELPLT 135
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V INP + + +Y K+ EGC S++ A+V R+ V+L+GLD++ K + GW AR
Sbjct: 136 VMINPVLTVTNY-SKLKHPEGCMSVRGFSAEVERFEGVKLSGLDKSSKQNDLILSGWNAR 194
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYY 162
I QHEMDHLDG L+TD M + C CW+ +N ++G +E+ +Y
Sbjct: 195 IAQHEMDHLDGKLYTDQMDRSTFSCTCWEAVNTKSGRVEIPFY 237
>gi|24645726|ref|NP_731494.1| CG31278 [Drosophila melanogaster]
gi|23170931|gb|AAF54540.2| CG31278 [Drosophila melanogaster]
gi|54650588|gb|AAV36873.1| RE57173p [Drosophila melanogaster]
gi|220952214|gb|ACL88650.1| CG31278-PA [synthetic construct]
Length = 238
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 97/163 (59%), Gaps = 2/163 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP-EESFSEGDIKKFEMQAFPHM 59
+K I+ +M V+++FD G++APQ+G+ LR+ + F + E + +M P
Sbjct: 76 IKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGRIRKELPEAVYQARQMSELPLT 135
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
++INP + + +Y K+ EGC S++ A+V R+ V+LTGLD+ G GW AR
Sbjct: 136 IFINPVLTVTNYA-KLKHPEGCMSVRGYSAEVERFEGVKLTGLDQLGNQSELALSGWNAR 194
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYY 162
I QHEMDHL+G L+TD M + C CW+ +N ++G +E+ +Y
Sbjct: 195 IAQHEMDHLEGKLYTDHMDRSTFACTCWEAVNTKSGRVEIPFY 237
>gi|291240947|ref|XP_002740376.1| PREDICTED: peptide deformylase-like [Saccoglossus kowalevskii]
Length = 270
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPE-ESFSEGDIKKFEMQAFPHMVWI 62
+I QM VM+R GLSAPQ+G+ ++ ++ + + +S I++ ++ FP ++I
Sbjct: 121 LIEQMVAVMRRGQTVGLSAPQIGVGCQVIVMEYKKKHMQMYSPAIIQQRGIKEFPLKIFI 180
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP+MK+LD KVT LEGC S+K A V RY V++TGL TG+ SW A+G+ ARIIQ
Sbjct: 181 NPQMKVLD-DTKVTQLEGCESIKGYSAYVERYHAVEITGLSPTGEMQSWKADGFPARIIQ 239
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQ 153
HEMDHL G L+ D M PKS W+ NL+
Sbjct: 240 HEMDHLQGRLYIDIMDPKSFVDDSWRQWNLE 270
>gi|327287510|ref|XP_003228472.1| PREDICTED: peptide deformylase, mitochondrial-like [Anolis
carolinensis]
Length = 236
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHM 59
++ +I ++ +M+R LSAPQVG+PL++F+ +P D+++ +M FP
Sbjct: 85 VQALIQRLVRLMRRERCVALSAPQVGIPLQVFVAEYPTRLLEEHPPDVRQARQMAPFPLR 144
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V+INP M++LD + V+ EGC S+ A VPR+ VQ+ GL+E G+ SW A GWAAR
Sbjct: 145 VFINPTMRVLDSQ-VVSHPEGCRSVHGFSACVPRFLAVQVAGLNEAGEESSWEACGWAAR 203
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
I+QHEMDHL G+L+ D M ++ V W D+
Sbjct: 204 IVQHEMDHLQGILYVDRMESRTFTSVRWADVR 235
>gi|255003823|ref|NP_080789.2| peptide deformylase-like protein [Mus musculus]
Length = 231
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPE-ESFSEGDIKKFEMQAFPHM 59
++ ++ +M VM+R GLSAPQ+G+PL++ + FPD +FS + +M+ FP
Sbjct: 80 LQRLVGRMVQVMRRRGCVGLSAPQLGVPLQVLALEFPDKLLRAFSPRLRELRQMEPFPLR 139
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V +NP +++LD + VT EGC S+ A VPR++ VQ++GLD G+P W+A GW AR
Sbjct: 140 VLVNPSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTAR 198
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
IIQHEMDHL G LF D M + + W ++N
Sbjct: 199 IIQHEMDHLQGCLFIDKMDSGTFTNLHWMEVN 230
>gi|195055502|ref|XP_001994656.1| GH17360 [Drosophila grimshawi]
gi|193892419|gb|EDV91285.1| GH17360 [Drosophila grimshawi]
Length = 203
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 96/156 (61%), Gaps = 2/156 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPD-PEESFSEGDIKKFEMQAFPHM 59
+K I+ QM V++ +D G++APQ+G+P+R+ ++ F + E F+ ++ +M P
Sbjct: 41 IKDIVEQMVKVLRHYDCVGVAAPQLGVPMRIIVMEFREGKREQFTPEVYEERKMSHLPLT 100
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
++INP+++I+ K T EGC S++ AKV RY +V++TG+ G P GW+AR
Sbjct: 101 IFINPQIEIISDKQH-THPEGCMSVRGYSAKVSRYDRVRVTGIGILGTPSELELVGWSAR 159
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
I QHEMDHL+G+++ D M S C+ WQ IN G
Sbjct: 160 IAQHEMDHLNGIVYIDRMDVSSFTCITWQQINATGG 195
>gi|332024895|gb|EGI65083.1| Peptide deformylase, mitochondrial [Acromyrmex echinatior]
Length = 240
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 92/159 (57%), Gaps = 2/159 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP-EESFSEGDIKKFEMQAFPHMVWI 62
+I + NVM+ + +G+S PQ+GLP ++F + + E E K EM P ++I
Sbjct: 78 VITHLINVMRAYKSYGISGPQIGLPWQIFAIECTEEIMEGVEETVKKTHEMNIIPMTIFI 137
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NPE+K++DY +T EGC S++ A VPR +V++ L+ + + +W A GW+ARI Q
Sbjct: 138 NPELKVMDY-TPITLYEGCESIRGYSAAVPRAYEVEIKALNASAEQFTWRACGWSARIAQ 196
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
HE DHL G L+ + M ++ +C W IN G + L Y
Sbjct: 197 HEYDHLQGKLYIEKMDIRTFQCTAWDKINKNKGKMRLSY 235
>gi|431912415|gb|ELK14549.1| Peptide deformylase, mitochondrial [Pteropus alecto]
Length = 244
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 96/155 (61%), Gaps = 8/155 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF----EMQAF 56
++ ++ ++ VM+R GLSAPQ+G+PL++ + FP E+ +F +M+ F
Sbjct: 93 LQQLVQRLVQVMRRRRCVGLSAPQLGVPLQVLALEFP---EALFRACAPRFREVRQMEPF 149
Query: 57 PHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
P V++NP +++LD + VT EGC S+ A VPR++ VQ++GLD GK W A GW
Sbjct: 150 PLRVFVNPSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPGGKQVMWQASGW 208
Query: 117 AARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
AARIIQHEMDHL G LF D M K+ + W ++N
Sbjct: 209 AARIIQHEMDHLQGCLFIDKMDSKTFTNIHWMEVN 243
>gi|76253777|ref|NP_001028902.1| peptide deformylase, mitochondrial [Danio rerio]
gi|66911060|gb|AAH97196.1| Zgc:114141 [Danio rerio]
Length = 247
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 95/150 (63%), Gaps = 4/150 (2%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP--EESFSEGDIKKFEMQAFPHMVW 61
+I + VM++ + GLSAPQ+G+PLR+ + +P EES S ++ + A P M++
Sbjct: 99 VIKTLVKVMRKLECVGLSAPQIGVPLRILALEYPKKMLEES-STASVEARGLVAVPLMIF 157
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP++++LD + V E C S+ A VPRY V+++GL+E + SW A GW ARI+
Sbjct: 158 INPQLRVLDGRT-VIFQEACESISGYSASVPRYVSVEVSGLNEKAEEVSWKASGWPARIL 216
Query: 122 QHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
QHEMDHL+G+L+ D M K+ V W++ N
Sbjct: 217 QHEMDHLNGVLYIDHMDSKTFINVKWEEHN 246
>gi|209736128|gb|ACI68933.1| Peptide deformylase, mitochondrial precursor [Salmo salar]
Length = 249
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP--EESFSEGDIKKFEMQAFPHMVW 61
+I M VM++F+ GLSAPQVG+PLR+ + FP+ E+S + + A P ++
Sbjct: 101 VIHTMVKVMRKFECVGLSAPQVGVPLRILALEFPERMLEDSLPAAREAR-GLTAVPLRIF 159
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP++++LD + V E C S+ A VPRY V+++GL+E +P +W GW ARI+
Sbjct: 160 INPQLRVLDGRT-VLFQEACESISGFSATVPRYLSVEVSGLNEKAEPVTWQVSGWPARIL 218
Query: 122 QHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
QHEMDHLDG+L+ D M K+ V W N
Sbjct: 219 QHEMDHLDGVLYIDRMDSKTFINVNWAAKN 248
>gi|194902258|ref|XP_001980657.1| GG17276 [Drosophila erecta]
gi|190652360|gb|EDV49615.1| GG17276 [Drosophila erecta]
Length = 238
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 96/163 (58%), Gaps = 2/163 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP-EESFSEGDIKKFEMQAFPHM 59
+K I+ +M V+++F+ G++APQ+G+ LR+ + F + E + +M P
Sbjct: 76 IKAIVERMVKVLRKFECVGIAAPQIGVSLRIIAMEFKGRVRKELPEVVYQARQMSELPLT 135
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V INP + + +Y K+ EGC S++ A+V R+ V+LTGLD+ G GW AR
Sbjct: 136 VLINPVLTVTNY-TKLKHPEGCMSVRGYSAEVERFEGVKLTGLDQQGIQSELALSGWNAR 194
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYY 162
I QHEMDHL+G L+TD M + C CW+ +N ++G +E+ +Y
Sbjct: 195 IAQHEMDHLEGKLYTDHMDRSTFACTCWEAVNTKSGRVEIPFY 237
>gi|119910219|ref|XP_001255524.1| PREDICTED: peptide deformylase, mitochondrial [Bos taurus]
gi|297485396|ref|XP_002694953.1| PREDICTED: peptide deformylase, mitochondrial [Bos taurus]
gi|296478169|tpg|DAA20284.1| TPA: peptide deformylase-like [Bos taurus]
Length = 250
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHM 59
++ ++ ++ VM+R GLSAPQ+G+PL++ + FP+ +++ +M+ FP
Sbjct: 99 LQRLVERLVQVMRRRHCVGLSAPQLGVPLQVLALEFPETLFRACAPRVREARQMEPFPLR 158
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V++NP +++LD + VT EGC S+ A VPR++ VQ++GLD G+ W A GWAAR
Sbjct: 159 VFVNPSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPRGEQVVWQASGWAAR 217
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
IIQHEMDHL G LF D M K+ + W ++N
Sbjct: 218 IIQHEMDHLQGCLFIDKMDSKTFTNIHWMEVN 249
>gi|426243631|ref|XP_004015654.1| PREDICTED: peptide deformylase, mitochondrial [Ovis aries]
Length = 250
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHM 59
++ ++ ++ VM+R GLSAPQ+G+PL++ + FP+ +++ +M+ FP
Sbjct: 99 LQRLVERLVQVMRRRRCVGLSAPQLGVPLQVLALEFPEALFRACAPRVREARQMEPFPLR 158
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V++NP +++LD + VT EGC S+ A VPR++ VQ++GLD G+ W A GWAAR
Sbjct: 159 VFVNPSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPRGEQVVWQASGWAAR 217
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
IIQHEMDHL G LF D M K+ + W ++N
Sbjct: 218 IIQHEMDHLQGCLFIDKMDSKTFTNIHWMEVN 249
>gi|149038103|gb|EDL92463.1| component of oligomeric golgi complex 8 (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 141
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 90/141 (63%), Gaps = 2/141 (1%)
Query: 12 MKRFDLFGLSAPQVGLPLRLFIVAFPDPE-ESFSEGDIKKFEMQAFPHMVWINPEMKILD 70
M+R GLSAPQ+G+PL++ ++ FPD +FS + +M+ FP V +NP +++LD
Sbjct: 1 MRRRGCVGLSAPQLGVPLQVLVLEFPDRLFRAFSPRLRELRQMEPFPLRVLVNPSLRVLD 60
Query: 71 YKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDG 130
+ VT EGC S+ A VPR++ VQ++GLD G+P W+A GW ARIIQHEMDHL G
Sbjct: 61 SR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTARIIQHEMDHLHG 119
Query: 131 LLFTDSMLPKSLECVCWQDIN 151
LF D M + + W ++N
Sbjct: 120 CLFIDKMDSGTFTNLHWMEVN 140
>gi|417397813|gb|JAA45940.1| Putative peptide deformylase [Desmodus rotundus]
Length = 248
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHM 59
+++++ ++ VM+R GLSAPQ+G+PL++ + FP+ +++ +M+ FP
Sbjct: 97 LQLLVQRLVQVMRRQRCVGLSAPQLGVPLQVLALEFPEALFRACAPRLRETRQMEPFPLR 156
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V++NP +++LD + VT EGC S+ A VPR++ VQ++GLD G+ W A GWAAR
Sbjct: 157 VFVNPSLRVLDSR-LVTFSEGCESVAGFLACVPRFQAVQISGLDPRGEQMVWQASGWAAR 215
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
IIQHEMDHL G LF D M K+ + W +N
Sbjct: 216 IIQHEMDHLQGCLFIDKMDSKTFTNIHWMAVN 247
>gi|344290933|ref|XP_003417191.1| PREDICTED: peptide deformylase, mitochondrial-like [Loxodonta
africana]
Length = 250
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 97/152 (63%), Gaps = 2/152 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPE-ESFSEGDIKKFEMQAFPHM 59
++ ++ ++ VM+R GLSAPQ+G+PL++ + FP+ +++ + +M+ FP
Sbjct: 99 LQRLVERLVQVMRRRHCVGLSAPQLGVPLQVLALEFPEALLRAYAPRVREARQMEPFPLR 158
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V++NP +++LD + VT EGC S+ A VPR++ VQ++GLD G+ W A GWAAR
Sbjct: 159 VFVNPSLRVLDSR-LVTFPEGCESVSGFLACVPRFQGVQISGLDPRGEQVVWQASGWAAR 217
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
IIQHEMDHL G LF D M ++ + W ++N
Sbjct: 218 IIQHEMDHLQGCLFIDKMDSRTFTNIHWMEVN 249
>gi|73957448|ref|XP_853641.1| PREDICTED: peptide deformylase, mitochondrial [Canis lupus
familiaris]
Length = 242
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHM 59
++ ++ ++ VM+R GLSAPQ+G+PL++ FP+ +++ +M+ FP
Sbjct: 91 LQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLAFEFPEALFRACAPRLRETRQMEPFPLR 150
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V +NP +++LD + +VT EGC S+ A VPR++ VQ++GLD G+ W A GWAAR
Sbjct: 151 VVVNPSLRVLDSR-RVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEQVVWQASGWAAR 209
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
IIQHEMDHL G LF D M K+ + W ++N
Sbjct: 210 IIQHEMDHLQGCLFIDKMDSKTFTNIHWMEVN 241
>gi|47221907|emb|CAF98919.1| unnamed protein product [Tetraodon nigroviridis]
Length = 198
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 94/152 (61%), Gaps = 8/152 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP--EESFSEGDIKKFEMQAFPHMVW 61
++ + VM+ D GLSAPQ+G+PLR+ + +P+ EES S + + A P ++
Sbjct: 50 VVHTLVKVMRELDCVGLSAPQIGVPLRILALEYPEKMLEES-SPASREARGLSAQPLRIF 108
Query: 62 INPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+NP++++LD + TAL E C S+ A VPRY V+++GL+E G+ W A GW AR
Sbjct: 109 VNPQLRVLDGR---TALFQEACESISGFSATVPRYLSVEVSGLNENGEEVRWQARGWPAR 165
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
I+QHEMDHLDG+L+ D M ++ + WQ N
Sbjct: 166 ILQHEMDHLDGVLYIDRMDSRTFTNIHWQAFN 197
>gi|195571951|ref|XP_002103964.1| GD20712 [Drosophila simulans]
gi|194199891|gb|EDX13467.1| GD20712 [Drosophila simulans]
Length = 196
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 93/153 (60%), Gaps = 2/153 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPD-PEESFSEGDIKKFEMQAFPHMVWI 62
II M V++ +D G++APQVG+PLR+ ++ F + +E F ++ +M P V+I
Sbjct: 37 IIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGKQEQFKPEIYEERKMSTLPLAVFI 96
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NPE++I+ + EGC S++ A+V RY KV++ G+ + G P EGW+ARI Q
Sbjct: 97 NPELEIISSQVN-KHPEGCMSVRGYSAQVERYDKVRIRGIGKLGTPSEMELEGWSARIAQ 155
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
HE+DHL+G ++ D M P + C+ W+ IN G
Sbjct: 156 HEVDHLNGTIYMDKMDPSTFNCILWEQINAAEG 188
>gi|301775659|ref|XP_002923264.1| PREDICTED: peptide deformylase, mitochondrial-like [Ailuropoda
melanoleuca]
gi|281349917|gb|EFB25501.1| hypothetical protein PANDA_012363 [Ailuropoda melanoleuca]
Length = 141
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 90/141 (63%), Gaps = 2/141 (1%)
Query: 12 MKRFDLFGLSAPQVGLPLRLFIVAFPDPE-ESFSEGDIKKFEMQAFPHMVWINPEMKILD 70
M+R GLSAPQ+G+PL++ + FP+ + + G + +M+ FP V++NP +++LD
Sbjct: 1 MRRRRCVGLSAPQLGVPLQVLALEFPEALFRACAPGLREARQMEPFPLRVFVNPSLRVLD 60
Query: 71 YKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDG 130
+ VT EGC S+ A VPR++ VQ++GLD G+ W A GWAARIIQHEMDHL G
Sbjct: 61 SR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEQVVWQASGWAARIIQHEMDHLQG 119
Query: 131 LLFTDSMLPKSLECVCWQDIN 151
LF D M K+ + W ++N
Sbjct: 120 CLFIDKMDSKTFTNIYWMEVN 140
>gi|225706662|gb|ACO09177.1| Peptide deformylase, mitochondrial precursor [Osmerus mordax]
Length = 248
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 92/149 (61%), Gaps = 2/149 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPE-ESFSEGDIKKFEMQAFPHMVWI 62
+I M VM++ GLSAPQVG+PLR+ + FP+ + S + + P V+I
Sbjct: 100 VIGAMVKVMRKLQCVGLSAPQVGVPLRILALEFPESMLKDVSPAAREARGVAVVPLRVFI 159
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP++++LD + V E C S+ A+VPRY +V+++GL+E +P +W GW ARI+Q
Sbjct: 160 NPQLRVLD-RRTVLFQEACESISGFSARVPRYLEVEVSGLNEKAEPVTWEVSGWPARILQ 218
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
HEMDHLDG+L+ D M K+ + W++ N
Sbjct: 219 HEMDHLDGVLYIDHMDTKTFINIKWEEHN 247
>gi|444709352|gb|ELW50373.1| Conserved oligomeric Golgi complex subunit 8 [Tupaia chinensis]
Length = 823
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 59/152 (38%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHM 59
++ ++ ++ VM+R GLSAPQ+G+PL++ + P+ +++ +M+ FP
Sbjct: 672 LQRLVQRLVQVMRRRRCVGLSAPQLGVPLQVLALELPEALCRACSPRLRQLRQMEPFPLR 731
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V++NP +++LD + VT EGC S+ A VPR++ VQ++GLD G+ W A GWA+R
Sbjct: 732 VFVNPSLRVLDSR-LVTFPEGCESVAGFLAYVPRFQAVQISGLDPRGEQVVWQASGWASR 790
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
IIQHEMDHL G LF D M ++ + W ++N
Sbjct: 791 IIQHEMDHLQGCLFIDKMDSRTFTNIHWMEVN 822
>gi|410907161|ref|XP_003967060.1| PREDICTED: peptide deformylase, mitochondrial-like [Takifugu
rubripes]
Length = 212
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 92/149 (61%), Gaps = 4/149 (2%)
Query: 5 ILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP--EESFSEGDIKKFEMQAFPHMVWI 62
I + VM++ D GLSAPQ+G+PLR+ + +P+ EES S + + A P +++
Sbjct: 65 INTLVKVMRKLDCVGLSAPQIGVPLRILALEYPEKMLEES-SPASREARGLSAQPLRIFV 123
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP +++LD + V E C S+ A VPRY V+++GL+E G+ +W A GW ARI+Q
Sbjct: 124 NPHLRVLDGR-TVLFQEACESISGYSATVPRYLSVEVSGLNEKGEDVTWEASGWPARILQ 182
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
HEMDHLDG+L+ D M ++ + WQ N
Sbjct: 183 HEMDHLDGVLYVDRMDSRTFLNINWQAFN 211
>gi|410983898|ref|XP_003998272.1| PREDICTED: peptide deformylase, mitochondrial [Felis catus]
Length = 263
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHM 59
++ ++ ++ VM+R GLSAPQ+G+PL++ + FP+ +++ +M+ FP
Sbjct: 112 LQRLVQRLVQVMRRRRCVGLSAPQLGVPLQVLALEFPESLFRACAPRLREARQMEPFPLR 171
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V++NP +++LD + VT EGC S+ A VPR++ VQ++GLD G+ W A GWAAR
Sbjct: 172 VFVNPSLRVLDSR-LVTFPEGCESVVGFLACVPRFQAVQISGLDPRGEQVVWQASGWAAR 230
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
IIQHEMDHL G LF D M K+ + W ++N
Sbjct: 231 IIQHEMDHLQGCLFIDKMDSKTFTNIHWMEVN 262
>gi|302563993|ref|NP_001181771.1| peptide deformylase, mitochondrial precursor [Macaca mulatta]
Length = 243
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 90/146 (61%), Gaps = 2/146 (1%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP-EESFSEGDIKKFEMQAFPHMVWINPE 65
++ VM+R GLSAPQ+G+PL++ + P+ F +M+ FP V++NP
Sbjct: 98 RLVQVMRRRRCVGLSAPQLGVPLQVLALELPEALCREFPPRQRALRQMEPFPLRVFVNPS 157
Query: 66 MKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEM 125
+++LD + VT EGC S+ A VPR++ VQ++GLD G+ +W A GWAARIIQHEM
Sbjct: 158 LRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVAWQASGWAARIIQHEM 216
Query: 126 DHLDGLLFTDSMLPKSLECVCWQDIN 151
DHL G LF D M ++ V W ++N
Sbjct: 217 DHLQGCLFIDKMDSRTFTNVYWMEVN 242
>gi|194902253|ref|XP_001980656.1| GG17275 [Drosophila erecta]
gi|190652359|gb|EDV49614.1| GG17275 [Drosophila erecta]
Length = 196
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 97/160 (60%), Gaps = 2/160 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPD-PEESFSEGDIKKFEMQAFPHMVWI 62
II M V++ +D G++APQVG+PLR+ ++ F + +E F ++ +M P V+I
Sbjct: 37 IIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGKQEQFKPEIYEERKMSTLPLAVFI 96
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NPE++I+ + EGC S++ A+V RY KV++ G+ + G P EGW+ARI Q
Sbjct: 97 NPELEIISSQVN-KHPEGCMSVRGYSAQVERYDKVRIRGIGKLGTPSEMELEGWSARIAQ 155
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYY 162
HE+DHL+G+++ D M + C+ W+ IN+ G + Y+
Sbjct: 156 HEVDHLNGIIYVDKMDLPTFNCILWEQINVAEGRSAIWYH 195
>gi|348572806|ref|XP_003472183.1| PREDICTED: LOW QUALITY PROTEIN: peptide deformylase,
mitochondrial-like [Cavia porcellus]
Length = 237
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 93/154 (60%), Gaps = 6/154 (3%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFE---MQAFP 57
++ ++ Q+ VM+R GLSAPQ+G+PL+ ++A PEE F + E M FP
Sbjct: 86 LQRLVQQLVQVMRRRRCVGLSAPQLGVPLQ--VLALELPEELFRACAPRLRELRQMSPFP 143
Query: 58 HMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWA 117
V +NP +++LD + VT EGC S+ A VPR++ VQ++GLD G+ W A GW
Sbjct: 144 LRVLVNPSLRVLDSR-LVTFPEGCESVAGFLAYVPRFQAVQISGLDPRGEQVVWQASGWT 202
Query: 118 ARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
ARIIQHEMDHL G LF D M ++ V W ++N
Sbjct: 203 ARIIQHEMDHLQGCLFIDKMDTRTFTNVQWMEVN 236
>gi|195444657|ref|XP_002069968.1| GK11287 [Drosophila willistoni]
gi|194166053|gb|EDW80954.1| GK11287 [Drosophila willistoni]
Length = 241
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFP-DPEESFSEGDIKKFEMQAFPHM 59
+K I+ QM V+++++ G++APQ+G+ LR+ + F + + E + M P
Sbjct: 79 IKAIVEQMIKVLRKYNCVGIAAPQIGVSLRIIAMEFKKEIRKELPEFTYQARLMSELPLT 138
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V INPE+ + Y K+ EGC S++ +V RY V L G D G + GW AR
Sbjct: 139 VLINPELTVTSYV-KLKHPEGCMSVRGYSGEVERYEAVNLNGHDRLGVKTQISLTGWNAR 197
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYY 162
I QHEMDHLDG L+TD M + C CW+ +N ++G +E+ +Y
Sbjct: 198 IAQHEMDHLDGKLYTDRMDRSTFTCTCWEAVNTKSGRVEIPFY 240
>gi|383857357|ref|XP_003704171.1| PREDICTED: peptide deformylase, mitochondrial-like [Megachile
rotundata]
Length = 241
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 97/161 (60%), Gaps = 8/161 (4%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESF----SEGDIKKFEMQAFPHMVWI 62
Q+ VM+R+ + GL+APQ+G+ L++F++ E F + FEM+ P +I
Sbjct: 84 QLCRVMRRYTMCGLAAPQIGVSLQVFVIEL---REKFVMRIPPAAREHFEMEPVPLTYFI 140
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP+M+I++ ++ E C S+ +A VPR ++++LT D G+P W A GWAARI Q
Sbjct: 141 NPKMRIVN-SEETEFPEYCGSITGFEAVVPRAKQIKLTAFDRLGEPFIWNASGWAARIAQ 199
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
HE DHL G+L+ D M P + + W+++N G ++L+Y +
Sbjct: 200 HEFDHLQGVLYVDKMDPTTFQFNYWKELNENKGDIKLQYRL 240
>gi|195389909|ref|XP_002053614.1| GJ23992 [Drosophila virilis]
gi|194151700|gb|EDW67134.1| GJ23992 [Drosophila virilis]
Length = 203
Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 93/153 (60%), Gaps = 2/153 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEES-FSEGDIKKFEMQAFPHMVWI 62
I+ QM V++ +D G++APQ+G+PLR+ ++ F + + + F+ D ++ +M P V+I
Sbjct: 44 IVDQMVKVLRHYDCVGVAAPQLGVPLRIIVMEFREGKRAQFTAEDYEQRKMSPLPLSVFI 103
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP+++I+ T EGC S++ +V RY +V++TG+ G P GW+ARI Q
Sbjct: 104 NPKIEIITDAQH-THPEGCMSVRGFSGQVARYDRVRVTGIGMLGTPSELELVGWSARIAQ 162
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
HEMDHL+G+++ D M S C+ W IN G
Sbjct: 163 HEMDHLNGIIYVDRMDVSSFTCINWPQINASGG 195
>gi|194741016|ref|XP_001952985.1| GF17444 [Drosophila ananassae]
gi|190626044|gb|EDV41568.1| GF17444 [Drosophila ananassae]
Length = 238
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 94/163 (57%), Gaps = 2/163 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP-EESFSEGDIKKFEMQAFPHM 59
++ I+ +M V++++D G++APQ+G+ LR+ + F + E + +M P
Sbjct: 76 VEAIVEKMVRVLRKYDCVGIAAPQIGVSLRIIAMEFKGSIRKELPEAVYQARQMTELPLT 135
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V+INP + + +Y K+ EGC S++ A V R+ V ++G + G + GW AR
Sbjct: 136 VFINPVLTVTNY-TKLKHPEGCMSVRGFSADVERFEGVSISGSNGNGVQNELELSGWNAR 194
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYY 162
I QHEMDHLDG L+TD M + C CW+ +N ++G +E+ +Y
Sbjct: 195 IAQHEMDHLDGKLYTDHMDRSTFACTCWEAVNTKSGRVEIPFY 237
>gi|383410437|gb|AFH28432.1| peptide deformylase, mitochondrial precursor [Macaca mulatta]
Length = 243
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 93/148 (62%), Gaps = 6/148 (4%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF---EMQAFPHMVWIN 63
++ VM+R GLSAPQ+G+PL+ ++A PE E ++ +M+ FP V++N
Sbjct: 98 RLVQVMRRRRCVGLSAPQLGVPLQ--VLALKLPEALCRECPPRQRALRQMEPFPLRVFVN 155
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P +++LD + VT EGC S+ A VPR++ VQ++GLD G+ +W A GWAARIIQH
Sbjct: 156 PSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVAWQASGWAARIIQH 214
Query: 124 EMDHLDGLLFTDSMLPKSLECVCWQDIN 151
EMDHL G LF D M ++ V W ++N
Sbjct: 215 EMDHLQGCLFIDKMDSRTFTNVYWMEVN 242
>gi|351694489|gb|EHA97407.1| Peptide deformylase, mitochondrial [Heterocephalus glaber]
Length = 237
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 94/154 (61%), Gaps = 6/154 (3%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFE---MQAFP 57
++ ++ ++ VM+R GLSAPQ+G+PL+ ++A PEE F + E M FP
Sbjct: 86 LQKLVQKLVQVMRRRRCVGLSAPQLGVPLQ--VLALELPEELFRACAPRLRELRQMDPFP 143
Query: 58 HMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWA 117
V++NP +++LD + VT EGC S+ A VPR++ VQ++GL+ G+ W A GW
Sbjct: 144 LRVFVNPSLRVLD-RSLVTFPEGCESVAGFLAYVPRFQAVQISGLNPRGEQVVWQASGWT 202
Query: 118 ARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
ARIIQHEMDHL G LF D M ++ + W ++N
Sbjct: 203 ARIIQHEMDHLQGCLFIDKMDSRTFTNIHWMEVN 236
>gi|241562206|ref|XP_002401329.1| polypeptide deformylase, putative [Ixodes scapularis]
gi|215499858|gb|EEC09352.1| polypeptide deformylase, putative [Ixodes scapularis]
Length = 217
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEG-DIKKFEMQAFPHM 59
++ +I M+ VM+ G+SAPQ+G PL++ ++ F + ++ D+ QAFP
Sbjct: 58 IRKVIHTMRQVMRGTYSVGISAPQIGCPLQITMMEFSNSNIRMAKKEDMTARLYQAFPLK 117
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V+INP M++++ + V EGC S++ A+VPRY +V+++GL+E G+ W A GW AR
Sbjct: 118 VFINPTMEVVNNQQLVFP-EGCESIRGYSAEVPRYYEVKISGLNEHGEHHEWQARGWPAR 176
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDI 150
IIQHE+DHL+G L+ D M +S + WQ I
Sbjct: 177 IIQHEIDHLEGCLYIDRMNSRSFQFNYWQYI 207
>gi|395837135|ref|XP_003791498.1| PREDICTED: peptide deformylase, mitochondrial [Otolemur garnettii]
Length = 254
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 94/152 (61%), Gaps = 2/152 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHM 59
++ ++ ++ VM+R GLSAPQ+G+PL++ + P+ +++ +++ FP
Sbjct: 103 LQRLVQRLVQVMRRRRCVGLSAPQLGVPLQVLALELPEALYRAYAPRVRELRQIEPFPLR 162
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V++NP M++LD + VT EGC S+ A VPR++ VQ++GLD G+ W A WAAR
Sbjct: 163 VFVNPSMRVLDNR-LVTFSEGCESVAGFLACVPRFQAVQISGLDPGGEHVVWQASDWAAR 221
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
I+QHEMDHL G LF D M ++ V W ++N
Sbjct: 222 IVQHEMDHLQGCLFIDKMDSRTFTNVHWMEVN 253
>gi|195499832|ref|XP_002097114.1| GE24677 [Drosophila yakuba]
gi|194183215|gb|EDW96826.1| GE24677 [Drosophila yakuba]
Length = 196
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 92/153 (60%), Gaps = 2/153 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPD-PEESFSEGDIKKFEMQAFPHMVWI 62
II M V++ +D G++APQVG+PLR+ ++ F + +E F ++ +M P V+I
Sbjct: 37 IIEGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGKQEQFKPEVYEERKMSTLPLAVFI 96
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NPE++I+ + EGC S++ A+V RY KV++ G+ + G P EGW+ARI Q
Sbjct: 97 NPELEIISSQVNKHP-EGCMSVRGFSAEVERYDKVRIRGIGKLGTPSEMELEGWSARIAQ 155
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
HE+DHL+G ++ D M + +C W+ IN G
Sbjct: 156 HEVDHLNGTIYMDKMDLSTFKCNLWEQINAAEG 188
>gi|195571953|ref|XP_002103965.1| GD20713 [Drosophila simulans]
gi|194199892|gb|EDX13468.1| GD20713 [Drosophila simulans]
Length = 239
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP-EESFSEGDIKKFEMQAFPHMVWI 62
I+ QM V+++FD G++APQ+G+ LR+ + F + E + +M P V+I
Sbjct: 79 IVEQMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGRIRKELPEAVYQARQMSELPLTVFI 138
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP + + +Y K+ EGC S++ A+V R+ V+LTGLD+ G GW ARI Q
Sbjct: 139 NPVLTVTNY-SKLKHPEGCMSVRGYSAEVERFEGVKLTGLDQLGNQSELALSGWNARIAQ 197
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
HEMDHL+G L+TD M + C CW+ +
Sbjct: 198 HEMDHLEGKLYTDHMDRSTFACTCWEAVT 226
>gi|195157966|ref|XP_002019865.1| GL12632 [Drosophila persimilis]
gi|194116456|gb|EDW38499.1| GL12632 [Drosophila persimilis]
Length = 196
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 89/153 (58%), Gaps = 2/153 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPD-PEESFSEGDIKKFEMQAFPHMVWI 62
I+ +M V++ +D G++APQVG+PLR+ ++ F + +E F + +M P V+I
Sbjct: 37 IVDRMVKVLRHYDCVGVAAPQVGVPLRIIVMEFREGKQEQFKPEIYAERKMSTLPLAVFI 96
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NPE++I EGC S++ A+V RY +V++ G+ + G P EGW ARI Q
Sbjct: 97 NPELEITSSAVN-KHPEGCMSVRGYSAQVERYERVRIKGIGKLGTPSEMELEGWNARIAQ 155
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
HE+DHL+G ++ D M + C+ WQ IN G
Sbjct: 156 HEVDHLNGKIYVDRMDVSTFNCLSWQQINAAEG 188
>gi|449473302|ref|XP_002190853.2| PREDICTED: peptide deformylase, mitochondrial, partial [Taeniopygia
guttata]
Length = 130
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Query: 23 PQVGLPLRLFIVAFPDPE-ESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEGC 81
PQ+G+PLR+F P + + ++ FP V +NP ++ILD + VT EGC
Sbjct: 1 PQLGVPLRVFAAEKPPARCARYPPALRQAHRIEPFPLRVLVNPALRILDSR-LVTGPEGC 59
Query: 82 ASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKS 141
AS+ A VPR+ V ++G+DE G P SW A GWAARIIQHEMDHLDG+L+ D M P++
Sbjct: 60 ASIHGFSAYVPRHWAVHVSGVDELGVPVSWEASGWAARIIQHEMDHLDGILYIDRMEPRT 119
Query: 142 LECVCWQDI 150
V W ++
Sbjct: 120 FTNVGWMEL 128
>gi|24645728|ref|NP_731495.1| CG31373 [Drosophila melanogaster]
gi|23170932|gb|AAN13481.1| CG31373 [Drosophila melanogaster]
Length = 196
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 91/153 (59%), Gaps = 2/153 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPD-PEESFSEGDIKKFEMQAFPHMVWI 62
II M V++ +D G++APQVG+PLR+ ++ F + +E F ++ +M P V+I
Sbjct: 37 IIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGKQEQFKPEIYEERKMSILPLAVFI 96
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NPE++I+ + EGC S++ A+V RY KV++ G+ + G P EGW ARI Q
Sbjct: 97 NPELEIISSQVNKHP-EGCMSVRGYSAEVERYDKVRIRGIGKLGTPSEMELEGWNARIAQ 155
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
HE+DHL+G ++ D M + C+ W+ IN G
Sbjct: 156 HEVDHLNGTIYMDRMDLSTFNCILWEQINAAEG 188
>gi|66771605|gb|AAY55114.1| IP07194p [Drosophila melanogaster]
Length = 206
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 91/153 (59%), Gaps = 2/153 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPD-PEESFSEGDIKKFEMQAFPHMVWI 62
II M V++ +D G++APQVG+PLR+ ++ F + +E F ++ +M P V+I
Sbjct: 47 IIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGKQEQFKPEIYEERKMSILPLAVFI 106
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NPE++I+ + EGC S++ A+V RY KV++ G+ + G P EGW ARI Q
Sbjct: 107 NPELEIISSQVNKHP-EGCMSVRGYSAEVERYDKVRIRGIGKLGTPSEMELEGWNARIAQ 165
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
HE+DHL+G ++ D M + C+ W+ IN G
Sbjct: 166 HEVDHLNGTIYMDRMDLSTFNCILWEQINAAEG 198
>gi|195107438|ref|XP_001998319.1| GI23899 [Drosophila mojavensis]
gi|193914913|gb|EDW13780.1| GI23899 [Drosophila mojavensis]
Length = 203
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAF-PDPEESFSEGDIKKFEMQAFPHMVWI 62
I+ QM V++ +D G++APQ+G+PLR+ + F + E F+ + +M P V+I
Sbjct: 44 IVDQMVKVLRHYDCVGVAAPQLGVPLRIIAMEFREEKREQFTPEVYLQRKMSTLPLSVFI 103
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP+++I+ T EGC S++ A+V RY +V++TG+ G PD GW+ARI Q
Sbjct: 104 NPKIEIIGDMQH-TQPEGCMSVRGFSARVARYDRVRVTGIGMLGTPDELELVGWSARIAQ 162
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
HEMDHL+G+++ D M S C W IN G
Sbjct: 163 HEMDHLNGIIYIDRMDVSSFICNTWARINSNGG 195
>gi|442755785|gb|JAA70052.1| Putative peptide deformylase [Ixodes ricinus]
Length = 217
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 95/155 (61%), Gaps = 10/155 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEM-----QA 55
++ +I M+ VM+ G+SAPQ+G PL++ ++ F + + KK EM QA
Sbjct: 58 IRKVIHTMRQVMQGTYSVGISAPQIGCPLQITMMEFSNSNMRMA----KKEEMTARLYQA 113
Query: 56 FPHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEG 115
FP V+INP M++++ + V EGC S++ A+VPRY +V+++GL+E G+ W G
Sbjct: 114 FPLKVFINPTMEVVNNQQLVFP-EGCESIRGYSAEVPRYYEVKISGLNEHGEHHEWQVRG 172
Query: 116 WAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDI 150
W ARIIQHE+DHL+G L+ D M +S + WQ I
Sbjct: 173 WPARIIQHEIDHLEGCLYIDRMNSRSFQFNYWQYI 207
>gi|226438315|pdb|3G5K|A Chain A, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
gi|226438316|pdb|3G5K|B Chain B, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
gi|226438317|pdb|3G5K|C Chain C, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
gi|226438318|pdb|3G5K|D Chain D, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
gi|226438319|pdb|3G5P|A Chain A, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
gi|226438320|pdb|3G5P|B Chain B, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
gi|226438321|pdb|3G5P|C Chain C, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
gi|226438322|pdb|3G5P|D Chain D, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
Length = 183
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 90/148 (60%), Gaps = 6/148 (4%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF---EMQAFPHMVWIN 63
++ VM+R GLSAPQ+G+P + ++A PE E ++ +M+ FP V++N
Sbjct: 38 RLVQVMRRRRCVGLSAPQLGVPRQ--VLALELPEALCRECPPRQRALRQMEPFPLRVFVN 95
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P +++LD + VT EGC S+ A VPR++ VQ++GLD G+ W A GWAARIIQH
Sbjct: 96 PSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQH 154
Query: 124 EMDHLDGLLFTDSMLPKSLECVCWQDIN 151
EMDHL G LF D M ++ V W +N
Sbjct: 155 EMDHLQGCLFIDKMDSRTFTNVYWMKVN 182
>gi|125778496|ref|XP_001360006.1| GA16218 [Drosophila pseudoobscura pseudoobscura]
gi|54639756|gb|EAL29158.1| GA16218 [Drosophila pseudoobscura pseudoobscura]
Length = 196
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 89/153 (58%), Gaps = 2/153 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPD-PEESFSEGDIKKFEMQAFPHMVWI 62
I+ +M V++ +D G++APQVG+PLR+ ++ F + +E F + +M P V+I
Sbjct: 37 IVDRMVKVLRHYDCVGVAAPQVGVPLRIIVMEFREGKQEQFKPEIYAERKMSTLPLAVFI 96
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NPE++I EGC S++ A+V RY +V++ G+ + G P EGW ARI Q
Sbjct: 97 NPELEITSSAVN-KHPEGCMSVRGYSAQVERYDRVRIKGIGKLGTPSEMELEGWNARIAQ 155
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
HE+DHL+G ++ D M + C+ WQ IN G
Sbjct: 156 HEVDHLNGKIYVDRMDVSTFNCLSWQQINAAEG 188
>gi|260834959|ref|XP_002612477.1| hypothetical protein BRAFLDRAFT_278948 [Branchiostoma floridae]
gi|229297854|gb|EEN68486.1| hypothetical protein BRAFLDRAFT_278948 [Branchiostoma floridae]
Length = 188
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 87/150 (58%), Gaps = 2/150 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
++ Q+ VM++ GLSAPQVG+ L++ V + +I+K EMQ FP ++I
Sbjct: 40 VLEQLVKVMRKKGAVGLSAPQVGVGLQIIAVECTRKQLDLVPQEIRKIREMQEFPLKIFI 99
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP++K+ DY V EGC SL QA VPRY V +TGLD G P +W GW ARI+Q
Sbjct: 100 NPKLKVTDY-STVVFPEGCESLPGFQANVPRYYGVNITGLDREGMPVAWQVTGWPARILQ 158
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINL 152
HE++HL G L+ D M ++ W+ N
Sbjct: 159 HEVEHLRGDLYIDIMDSRTFIDSSWERKNF 188
>gi|410215864|gb|JAA05151.1| peptide deformylase (mitochondrial) [Pan troglodytes]
gi|410296168|gb|JAA26684.1| peptide deformylase (mitochondrial) [Pan troglodytes]
Length = 243
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 90/148 (60%), Gaps = 6/148 (4%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF---EMQAFPHMVWIN 63
++ VM+R GLSAPQ+G+P + ++A PE E ++ +M+ FP V++N
Sbjct: 98 RLVQVMRRRRCVGLSAPQLGVPRQ--VLALELPEALCRECPPRQRALRQMEPFPLRVFVN 155
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P +++LD + VT EGC S+ A VPR++ VQ++GLD G+ W A GWAARIIQH
Sbjct: 156 PSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQH 214
Query: 124 EMDHLDGLLFTDSMLPKSLECVCWQDIN 151
EMDHL G LF D M ++ V W +N
Sbjct: 215 EMDHLQGCLFIDKMDSRTFTNVYWMKVN 242
>gi|340725227|ref|XP_003400974.1| PREDICTED: hypothetical protein LOC100650902 [Bombus terrestris]
Length = 525
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 90/152 (59%), Gaps = 2/152 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
++ + ++K+ D GL+APQ+GL ++F + + I+ +++ FP +I
Sbjct: 368 VLDHLHKILKKSDTVGLAAPQIGLSWQIFAIEVTEDYVKDIHPSIRSHCQIEPFPLTYFI 427
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NPEMKI++ +++ E C SL QA+VPR +++Q+ LD GKP W A GW ARI+
Sbjct: 428 NPEMKIIN-PEELIFYETCGSLNHFQAEVPRPKEIQIKALDRFGKPFCWKANGWLARIVH 486
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQN 154
HEMDHL GL++TD M P + + + W + N
Sbjct: 487 HEMDHLKGLIYTDRMFPLTFDYIDWDEEKCTN 518
>gi|18043802|gb|AAH19912.1| Peptide deformylase (mitochondrial) [Homo sapiens]
Length = 243
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 90/148 (60%), Gaps = 6/148 (4%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF---EMQAFPHMVWIN 63
++ VM+R GLSAPQ+G+P + ++A PE E ++ +M+ FP V++N
Sbjct: 98 RLVQVMRRRRCVGLSAPQLGVPRQ--VLALELPEALCRECPPRQRALRQMEPFPLRVFVN 155
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P +++LD + VT EGC S+ A VPR++ VQ++GLD G+ W A GWAARIIQH
Sbjct: 156 PSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQH 214
Query: 124 EMDHLDGLLFTDSMLPKSLECVCWQDIN 151
EMDHL G LF D M ++ V W +N
Sbjct: 215 EMDHLQGCLFIDKMDSRTFTNVYWMKVN 242
>gi|195330059|ref|XP_002031726.1| GM26159 [Drosophila sechellia]
gi|194120669|gb|EDW42712.1| GM26159 [Drosophila sechellia]
Length = 196
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 91/153 (59%), Gaps = 2/153 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPD-PEESFSEGDIKKFEMQAFPHMVWI 62
II M V++ +D G++APQVG+PLR+ ++ F + +E F ++ +M P V+I
Sbjct: 37 IIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGKQEQFKPEIYEERKMSTLPLAVFI 96
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP ++I+ + EGC S++ A+V RY KV++ G+ + G P EGW+ARI Q
Sbjct: 97 NPVLEIISSQVN-KHPEGCMSVRGYSAQVERYDKVRIRGIGKLGTPSEMELEGWSARIAQ 155
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
HE+DHL+G ++ D M + C+ W+ IN G
Sbjct: 156 HEVDHLNGTIYMDKMDFSTFNCILWEQINAAEG 188
>gi|11641243|ref|NP_071736.1| peptide deformylase, mitochondrial precursor [Homo sapiens]
gi|17433054|sp|Q9HBH1.1|DEFM_HUMAN RecName: Full=Peptide deformylase, mitochondrial; AltName:
Full=Polypeptide deformylase; Flags: Precursor
gi|11320944|gb|AAG33968.1|AF239156_1 peptide deformylase-like protein [Homo sapiens]
gi|13195254|gb|AAK15624.1|AF322879_1 polypeptide deformylase-like protein [Homo sapiens]
gi|38230771|gb|AAR14341.1| peptide deformylase [synthetic construct]
gi|119603671|gb|EAW83265.1| hCG2027080, isoform CRA_a [Homo sapiens]
gi|119603674|gb|EAW83268.1| hCG2027080, isoform CRA_a [Homo sapiens]
Length = 243
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 90/148 (60%), Gaps = 6/148 (4%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF---EMQAFPHMVWIN 63
++ VM+R GLSAPQ+G+P + ++A PE E ++ +M+ FP V++N
Sbjct: 98 RLVQVMRRRRCVGLSAPQLGVPRQ--VLALELPEALCRECPPRQRALRQMEPFPLRVFVN 155
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P +++LD + VT EGC S+ A VPR++ VQ++GLD G+ W A GWAARIIQH
Sbjct: 156 PSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQH 214
Query: 124 EMDHLDGLLFTDSMLPKSLECVCWQDIN 151
EMDHL G LF D M ++ V W +N
Sbjct: 215 EMDHLQGCLFIDKMDSRTFTNVYWMKVN 242
>gi|290562011|gb|ADD38403.1| Peptide deformylase, mitochondrial [Lepeophtheirus salmonis]
Length = 247
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 89/155 (57%), Gaps = 4/155 (2%)
Query: 10 NVMKRFDLFGLSAPQVGLPLRLFIVAFPDPE-ESFSEGDIKKFEMQAF-PHMVWINPEMK 67
+V+K++D G+SAPQ+G P+ +F V F + +S+S + K M+ P V INP +
Sbjct: 75 HVLKKYDAVGVSAPQIGTPIAMFAVGFTKSQIKSWSTETVAKEGMEPIDPPRVVINPRID 134
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
I+D T EGC SL A+V RYRKV L G + G+ W A W ARIIQHEMDH
Sbjct: 135 IID-SSSSTHREGCCSLYGFSAQVARYRKVLLKGYNIHGEAFEWLATDWTARIIQHEMDH 193
Query: 128 LDGLLFTD-SMLPKSLECVCWQDINLQNGLLELRY 161
L G LF D ++LE WQ +N + G ++ Y
Sbjct: 194 LSGKLFIDPPTSTQTLEFNYWQSVNNRKGNFKMSY 228
>gi|427784873|gb|JAA57888.1| Putative peptide deformylase [Rhipicephalus pulchellus]
Length = 217
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 87/148 (58%), Gaps = 2/148 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGD-IKKFEMQAFPHMVWI 62
II M+ VM G+SAPQVG PLR+ ++ FP ++ + K Q FP V++
Sbjct: 61 IINVMRIVMINSYSAGISAPQVGCPLRIIMMEFPMKYMRLAQAEEAKTRAYQPFPLKVFV 120
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP M++ + ++ EGC S++ A VPRY +V+++GL+E G+ W A GW ARIIQ
Sbjct: 121 NPVMEVTN-SQRLVFPEGCESIRGFTADVPRYYEVKVSGLNEQGEAHEWQAYGWPARIIQ 179
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDI 150
HEMDHL+G LF D M ++ W I
Sbjct: 180 HEMDHLEGNLFIDLMDSRTFHFNYWHLI 207
>gi|395748035|ref|XP_003780572.1| PREDICTED: LOW QUALITY PROTEIN: peptide deformylase, mitochondrial,
partial [Pongo abelii]
Length = 212
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 89/148 (60%), Gaps = 6/148 (4%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF---EMQAFPHMVWIN 63
++ VM+R GLSAPQ+G+P + ++A E E ++ +M+ FP V++N
Sbjct: 67 RLVQVMRRRRCVGLSAPQLGVPRQ--VLALELTEALCRECPPRQRALRQMEPFPLRVFVN 124
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P +++LD + VT EGC S+ A VPR++ VQ++GLD G+ W A GWAARIIQH
Sbjct: 125 PSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQH 183
Query: 124 EMDHLDGLLFTDSMLPKSLECVCWQDIN 151
EMDHL G LF D M ++ V W +N
Sbjct: 184 EMDHLQGCLFIDKMDSRTFTDVYWMKVN 211
>gi|194741018|ref|XP_001952986.1| GF17443 [Drosophila ananassae]
gi|190626045|gb|EDV41569.1| GF17443 [Drosophila ananassae]
Length = 196
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 91/153 (59%), Gaps = 2/153 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPD-PEESFSEGDIKKFEMQAFPHMVWI 62
I+ +M V++ +D G++APQ+G+PLR+ ++ F + E + ++ +M P V++
Sbjct: 37 IVDRMVKVLRHYDCVGVAAPQIGIPLRIIVMEFREGKREQYKPEIYEERKMSTLPLAVFV 96
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NPE++I+ + EGC S++ A+V R+ KV++ G+ + G P EGW ARI Q
Sbjct: 97 NPELEIVSGQIN-KHPEGCMSVRGYSAEVGRFDKVRVRGVGKLGTPSEMELEGWNARIAQ 155
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
HE DHL+G ++ D M + +CV W+ IN G
Sbjct: 156 HETDHLNGCIYVDRMDVSTFQCVNWELINAAEG 188
>gi|196004180|ref|XP_002111957.1| hypothetical protein TRIADDRAFT_55505 [Trichoplax adhaerens]
gi|190585856|gb|EDV25924.1| hypothetical protein TRIADDRAFT_55505 [Trichoplax adhaerens]
Length = 201
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 2/146 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHM 59
+K +I +M M+ G++APQ+G PLR+ + S+ + + + P
Sbjct: 57 VKKLIDRMIKTMRSHGDLGIAAPQLGRPLRIITLEITKRHLSYLQAQYRNVVQRDTVPLQ 116
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V INP++K+LD KV E C+S+ + AKVPRY V+++ LD G ++ A+GW +R
Sbjct: 117 VLINPQLKVLD-NHKVAEYESCSSIHNCMAKVPRYTTVEVSALDRHGNRINYIADGWLSR 175
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECV 145
I+QHE+DHLDGLL+ D ML K+ V
Sbjct: 176 ILQHEVDHLDGLLYVDKMLSKTFAKV 201
>gi|390335566|ref|XP_790987.3| PREDICTED: peptide deformylase, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 243
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 89/149 (59%), Gaps = 2/149 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPE-ESFSEGDIKKFEMQAFPHMVWI 62
+I +M VM++ GL+APQ+G+ ++F++ F + + FSE K EM+ P V++
Sbjct: 94 LIQKMVGVMRKTGGVGLAAPQIGVAQQVFVMEFTEKHMKGFSEEIQKAREMEVVPLKVFV 153
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP +KIL ++V EGC SL A PR +V++TGL+E G+P +W G+ ARI+Q
Sbjct: 154 NPSLKILS-DNQVVLTEGCLSLTGFTAATPRAHEVEITGLNEKGEPVTWRVCGYPARILQ 212
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
HE DHL G L+ D M ++ + W N
Sbjct: 213 HEYDHLQGTLYIDRMDTRTFADLQWPQWN 241
>gi|334313034|ref|XP_003339811.1| PREDICTED: peptide deformylase, mitochondrial-like [Monodelphis
domestica]
Length = 234
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 88/152 (57%), Gaps = 2/152 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEE-SFSEGDIKKFEMQAFPHM 59
M+ +I + VM+ GLSAPQ+G+ L++ V FP+ ++ + M P
Sbjct: 83 MQALIAHLVRVMRAQGAVGLSAPQLGVALQVLAVEFPERLLLTYPHAVRQARRMAPCPLR 142
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V++NP +++LD + + EGC S+ A VPR+R V++ GL+E G+ W A GW AR
Sbjct: 143 VFVNPRVRVLDTRLD-SFPEGCLSVAGFVACVPRWRAVEIEGLNENGESVVWQATGWPAR 201
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
IIQHEMDHL G LF D M K+ V W ++N
Sbjct: 202 IIQHEMDHLQGCLFIDKMDSKTFTNVRWMEVN 233
>gi|380016361|ref|XP_003692155.1| PREDICTED: peptide deformylase, mitochondrial-like [Apis florea]
Length = 232
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 93/155 (60%), Gaps = 2/155 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKK-FEMQAFPHMVWI 62
I+ + ++K++D GL+APQ+GLP +LF + + I+K + + +P +I
Sbjct: 78 ILDHLYELLKKYDTVGLAAPQIGLPWQLFAIEVTEETVKHIHPYIRKCYGITTYPLTYFI 137
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP+MKI++ +++ E CAS+ A+VPR ++V++ L++ G+ S AEGW ARI+
Sbjct: 138 NPKMKIIN-PEEIVHFETCASIHCYYAEVPRPKEVEIEALNKFGESFSMKAEGWLARIVH 196
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLL 157
HEMDHL G L+TD M P S W+ + G++
Sbjct: 197 HEMDHLKGHLYTDRMFPFSFNYGEWKIDKYKEGIV 231
>gi|350403957|ref|XP_003486963.1| PREDICTED: hypothetical protein LOC100748041 [Bombus impatiens]
Length = 430
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 89/152 (58%), Gaps = 2/152 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
++ + ++K+ D GL+APQ+GL ++F + + I+ ++ FP +I
Sbjct: 267 VLDHLYKILKKSDTVGLAAPQIGLSWQVFAIEVTEDYVKEIHPIIRSHCQIHPFPLTYFI 326
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NPEM+I++ +++ E C S++ A+VPR +++Q+ LD GKP W A GW ARI
Sbjct: 327 NPEMQIIN-PEELIFHETCGSVEHFHAEVPRPKEIQIKALDRFGKPFCWKANGWLARIAH 385
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQN 154
HEMDHL GL++TD M P + + + W + N N
Sbjct: 386 HEMDHLKGLIYTDRMFPLTFDYIEWDEENCTN 417
>gi|328783477|ref|XP_623373.2| PREDICTED: hypothetical protein LOC409613 isoform 2 [Apis
mellifera]
Length = 328
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 89/149 (59%), Gaps = 2/149 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKK-FEMQAFPHMVWI 62
I+ + ++K+ D GL+APQ+GLP +LF+V + I+K + + P +I
Sbjct: 173 ILDHLYELLKKNDTVGLAAPQIGLPWQLFVVEMTEESIEHIHPYIRKCYGITPHPLTYFI 232
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP+M I++ ++V E CAS+ A+VPR ++VQ+ L++ G+ S AEGW ARII
Sbjct: 233 NPKMNIIN-SEEVVHFETCASIDCYYAEVPRPKEVQIEALNKFGESFSMKAEGWLARIIH 291
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
HEMDHL G L+TD M P S W+ I+
Sbjct: 292 HEMDHLKGHLYTDRMFPFSFNYGKWEKID 320
>gi|332227624|ref|XP_003262991.1| PREDICTED: peptide deformylase, mitochondrial [Nomascus leucogenys]
Length = 240
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF---EMQAFPHMVWIN 63
++ VM+R GLSAPQ+G+P ++ ++ E E ++ +M+ FP V++N
Sbjct: 98 RLVQVMRRRRCVGLSAPQLGVPRQVLVLELT--EALCRECPPRQRALRQMEPFPLRVFVN 155
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P +++LD + VT EGC S+ A VPR + VQ++GLD G+ W A GWAARIIQH
Sbjct: 156 PSLRVLDSR-LVTFPEGCESVAGFLACVPRLQAVQISGLDPNGEQVVWQASGWAARIIQH 214
Query: 124 EMDHLDGLLFTDSMLPKSLECVCW 147
EMDHL G LF D M ++ V W
Sbjct: 215 EMDHLQGCLFIDKMDSRTFTNVYW 238
>gi|296231447|ref|XP_002761154.1| PREDICTED: peptide deformylase, mitochondrial [Callithrix jacchus]
Length = 243
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 89/152 (58%), Gaps = 2/152 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHM 59
++ ++ ++ VM+R GLSAPQ+G+P ++ + + + +M+ FP
Sbjct: 92 LQRLVQRLVQVMRRQHCVGLSAPQLGVPRQVLALELTQALCQKTPPRQRALRQMEPFPLR 151
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V++NP +++LD + VT EGC S+ A VPR++ V+++GL+ G+ W A GWAAR
Sbjct: 152 VFVNPSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVEISGLNPNGEQVVWQASGWAAR 210
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
IIQHEMDHL G LF D M + + W + N
Sbjct: 211 IIQHEMDHLQGCLFIDKMDSTTFTNIFWMEAN 242
>gi|356526200|ref|XP_003531707.1| PREDICTED: peptide deformylase 1A, chloroplastic-like [Glycine max]
Length = 252
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 93/161 (57%), Gaps = 10/161 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMV 60
II M VM++ GL+APQ+G+PLR I+ D +E S + + K + + F +V
Sbjct: 94 IIDDMIQVMRKAPGVGLAAPQIGIPLR--IIVLEDTKEYISYVSKEEAKTQDRRPFDLLV 151
Query: 61 WINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
+NP+ L+ K K TAL EGC S+ +A V R+ V++TGLD G P A GW A
Sbjct: 152 ILNPK---LEKKGKRTALFFEGCLSVDGFRAVVERHLDVEVTGLDRYGAPIKIIASGWQA 208
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLEL 159
RI+QHE DHLDG L+ D MLP++ V D+ L G +L
Sbjct: 209 RILQHECDHLDGTLYVDKMLPRTFRTVDNMDLPLAQGCPKL 249
>gi|395508564|ref|XP_003758580.1| PREDICTED: peptide deformylase, mitochondrial [Sarcophilus
harrisii]
Length = 206
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 81/134 (60%), Gaps = 2/134 (1%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEE-SFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GLSAPQ+G PL++ + FP+ S+ + M P V++NP++++LD + V+
Sbjct: 73 GLSAPQLGAPLQVLALEFPESLLLSYPPAVRQARRMAPSPLRVFVNPQVRVLDSR-LVSF 131
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ A VPR + VQ+ GL+E G+ W A GW ARIIQHEMDHL G LF D M
Sbjct: 132 PEGCLSVAGFVACVPRCQAVQIEGLNENGESVVWQASGWLARIIQHEMDHLQGCLFIDKM 191
Query: 138 LPKSLECVCWQDIN 151
K+ V W ++N
Sbjct: 192 DSKTFTNVRWMEVN 205
>gi|156368959|ref|XP_001627958.1| predicted protein [Nematostella vectensis]
gi|156214922|gb|EDO35895.1| predicted protein [Nematostella vectensis]
Length = 192
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 91/153 (59%), Gaps = 7/153 (4%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP------EESFSEGDIKKFEMQA 55
K ++ ++ VM+ D G++APQ+G+ L++ + + + FS+ D+K+ +
Sbjct: 37 KAMVDRLVKVMRSHDGAGIAAPQIGVGLQVIAMEYTGKHMKKLKDNGFSDKDLKRMGIAI 96
Query: 56 FPHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEG 115
P V+INP++++++ K + E C S++ A VPR +V++T LD+ P +W A G
Sbjct: 97 VPLKVFINPKLRVINPK-MLAFRESCLSVEGHSAVVPRMSEVEVTALDQNATPITWRAAG 155
Query: 116 WAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQ 148
W ARI+QHE+DHL G L+ DSML K+ WQ
Sbjct: 156 WPARILQHEVDHLKGNLYVDSMLYKTFMNNNWQ 188
>gi|87162608|gb|ABD28403.1| Formylmethionine deformylase [Medicago truncatula]
Length = 257
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 12/154 (7%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESF---SEGDIKKFEMQAFPHMV 60
II M VM++ G++APQ+G+PLR I+ D EE +E + K + + F +V
Sbjct: 98 IIDDMILVMRKAPGVGVAAPQIGIPLR--IIVLEDKEEFICYNTEEETKAQDRRPFDLLV 155
Query: 61 WINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
+NP++K K TA EGC S+ QA V RY V++TG D G+P A GW A
Sbjct: 156 ILNPKLK---NKSNRTAFFFEGCLSVDRFQALVERYLDVEVTGFDRYGEPIKINASGWQA 212
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINL 152
RI+QHE DHLDG L+ D M+P++ W++++L
Sbjct: 213 RILQHECDHLDGTLYVDKMVPRTFR--SWKNVDL 244
>gi|449681178|ref|XP_002163732.2| PREDICTED: peptide deformylase, mitochondrial-like [Hydra
magnipapillata]
Length = 238
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 91/148 (61%), Gaps = 6/148 (4%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPE-----ESFSEGDIKKFEMQAFPHMVW 61
++ + ++R + G++APQ+G+PL++ V F + + + + K +M FP V
Sbjct: 89 RLVSTLRRHNGCGIAAPQIGVPLQVIAVEFTGYDLKVAMDKYGSKGVSKLQMSLFPLKVM 148
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP++KI+D + EGC S+K +A VPR +++++ L+ +G +++ + GW +RII
Sbjct: 149 INPKIKIID-PTMLALKEGCLSVKGYRALVPRAKEIEVEMLNVSGNTETFRSLGWTSRII 207
Query: 122 QHEMDHLDGLLFTDSMLPKSLECVCWQD 149
QHE+DHL G LF D+ML K+L W +
Sbjct: 208 QHEVDHLQGNLFVDTMLYKTLINDSWNE 235
>gi|350535372|ref|NP_001234703.1| peptide deformylase 1A, chloroplastic [Solanum lycopersicum]
gi|17433049|sp|Q9FUZ0.1|DEF1A_SOLLC RecName: Full=Peptide deformylase 1A, chloroplastic; Short=PDF 1A;
AltName: Full=Polypeptide deformylase; Flags: Precursor
gi|11320968|gb|AAG33981.1|AF271258_1 peptide deformylase-like protein [Solanum lycopersicum]
Length = 277
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 92/159 (57%), Gaps = 6/159 (3%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGD-IKKFEMQAFPHMVWI 62
II +M VM+ GL+APQ+G+PL++ ++ + S++ D K + + F +V I
Sbjct: 119 IIEEMVKVMRNAPGVGLAAPQIGIPLKIIVLEDTNEYISYAPKDETKAQDRRPFGLLVII 178
Query: 63 NPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP++K K TAL EGC S+ +A V R+ +V++TGLD GK A GW ARI
Sbjct: 179 NPKLK---KKGNKTALFFEGCLSVDGFRAVVERHLEVEVTGLDRNGKAIKVDASGWQARI 235
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLEL 159
+QHE DHLDG L+ D M P++ V D+ L G +L
Sbjct: 236 LQHEYDHLDGTLYVDKMAPRTFRTVENLDLPLAAGCPKL 274
>gi|255553123|ref|XP_002517604.1| polypeptide deformylase, putative [Ricinus communis]
gi|223543236|gb|EEF44768.1| polypeptide deformylase, putative [Ricinus communis]
Length = 266
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 91/160 (56%), Gaps = 16/160 (10%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPD------PEESFSEGDIKKFEMQAFP 57
II M VM+R GL+APQ+G+PLR+ ++ P+E D + F++
Sbjct: 108 IIDDMVKVMRRAPGVGLAAPQIGVPLRIIVLEDTTEYIGYAPKEETKAQDRRPFDL---- 163
Query: 58 HMVWINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEG 115
+V +NP++K K TAL EGC S+ +A V R +V+++GLD +G+P A G
Sbjct: 164 -LVILNPKLK---KKGNRTALFFEGCLSVDGFRAVVERSLEVEVSGLDRSGQPIKVDASG 219
Query: 116 WAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
W ARI+QHE DHLDG L+ D M+P++ V D+ L G
Sbjct: 220 WQARILQHECDHLDGTLYVDKMVPRTFRTVDNLDLPLAEG 259
>gi|226729275|sp|B6RGY0.1|DEF1A_ORYSJ RecName: Full=Peptide deformylase 1A, chloroplastic; Short=OsPDF1A;
Short=PDF 1A; Flags: Precursor
gi|164633052|gb|ABY64739.1| peptide deformylase 1A [Oryza sativa Japonica Group]
Length = 260
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 10/157 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMV 60
+I +M VM++ GL+APQ+G+PL+ I+ D +E S + DI+ + + F +V
Sbjct: 102 VIDRMVAVMRKAPGVGLAAPQIGVPLK--IIVLEDTQEYISYAPKKDIEAQDRRPFDLLV 159
Query: 61 WINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
INP++K K TAL EGC S+ +A V R+ V+++GLD G+P A GW A
Sbjct: 160 IINPKLKT---TSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQA 216
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
RI+QHE DHL+G L+ D+M+P++ V D+ L G
Sbjct: 217 RILQHECDHLEGTLYVDTMVPRTFRIVDNLDLPLPVG 253
>gi|357135197|ref|XP_003569198.1| PREDICTED: peptide deformylase 1A, chloroplastic-like [Brachypodium
distachyon]
Length = 258
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 91/157 (57%), Gaps = 10/157 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMV 60
+I QM VM++ GL+APQ+G+PL+ I+ D +E S + DI + + F +V
Sbjct: 100 VIDQMIAVMRKAPGVGLAAPQIGVPLK--IIVLEDTQEYISYAPKKDIDAQDRRPFDLLV 157
Query: 61 WINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
INP++K K TAL EGC S+ +A V R+ V+++GLD G P A GW A
Sbjct: 158 IINPKLK---KTSKRTALFYEGCLSVDGYRAVVERHLDVEVSGLDRNGCPVKVEASGWQA 214
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
RI+QHE DHL+G L+ D M+P++ V D+ L G
Sbjct: 215 RILQHECDHLEGTLYVDKMVPRTFRVVDNLDLPLATG 251
>gi|218188450|gb|EEC70877.1| hypothetical protein OsI_02402 [Oryza sativa Indica Group]
gi|222618667|gb|EEE54799.1| hypothetical protein OsJ_02204 [Oryza sativa Japonica Group]
Length = 155
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 91/153 (59%), Gaps = 10/153 (6%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMVWINP 64
M VM++ GL+APQ+G+PL+ I+ D +E S + DI+ + + F +V INP
Sbjct: 1 MVAVMRKAPGVGLAAPQIGVPLK--IIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINP 58
Query: 65 EMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
++K K TAL EGC S+ +A V R+ V+++GLD G+P A GW ARI+Q
Sbjct: 59 KLKT---TSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQARILQ 115
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
HE DHL+G L+ D+M+P++ V D+ L G
Sbjct: 116 HECDHLEGTLYVDTMVPRTFRIVDNLDLPLPVG 148
>gi|242046748|ref|XP_002461120.1| hypothetical protein SORBIDRAFT_02g041130 [Sorghum bicolor]
gi|241924497|gb|EER97641.1| hypothetical protein SORBIDRAFT_02g041130 [Sorghum bicolor]
Length = 193
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 92/161 (57%), Gaps = 10/161 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQ---AFPHMV 60
II +M +VM++ GL+APQ+G+PLR I+ D +E S K+ E Q F ++
Sbjct: 35 IIDRMVDVMRKAPGVGLAAPQIGVPLR--IIVLEDTQEYISYAPKKEIEAQDRRPFDLLI 92
Query: 61 WINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
INP++K K TAL EGC S+ +A V R+ V+++GLD G A GW A
Sbjct: 93 IINPKIK---NTSKRTALFFEGCLSVDGYRAVVERHLDVEVSGLDRNGSAIKVQASGWQA 149
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLEL 159
RI+QHE DHL+G L+ D M+P++ V D+ L G +L
Sbjct: 150 RILQHECDHLEGTLYVDRMVPRTFRIVDNLDLPLPIGCPQL 190
>gi|225442881|ref|XP_002281834.1| PREDICTED: peptide deformylase 1A, chloroplastic [Vitis vinifera]
gi|297743418|emb|CBI36285.3| unnamed protein product [Vitis vinifera]
Length = 277
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 89/159 (55%), Gaps = 6/159 (3%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGD-IKKFEMQAFPHMVWI 62
II M M+ GL+APQ+G+PLR+ ++ S+ D IK E + F +V +
Sbjct: 119 IIDDMIKAMRTAPGVGLAAPQIGIPLRIIVLEDTKEYISYDRKDVIKAQERRPFDLLVIL 178
Query: 63 NPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP+++ K TA EGC S+ +A V R+ +V++TGL GKP A GW ARI
Sbjct: 179 NPKLR---KKGNRTAFFFEGCLSVDGFRAVVERHLQVEVTGLSRNGKPIKVDASGWKARI 235
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLEL 159
+QHE DHLDG L+ D M+P++ V D+ L G +L
Sbjct: 236 LQHECDHLDGTLYVDKMVPRTFRTVQNIDLPLAVGCPKL 274
>gi|432863981|ref|XP_004070218.1| PREDICTED: peptide deformylase, mitochondrial-like, partial
[Oryzias latipes]
Length = 230
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 80/128 (62%), Gaps = 6/128 (4%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMV 60
+I M VM++ + GLSAPQ+G+PLR+ + +P E S + + + +Q P +
Sbjct: 106 VIKNMVKVMRKLECVGLSAPQIGVPLRILALEYPKKMLEESSPAVREARGITVQ--PLRI 163
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
++NP+++++D + V E C S+ A VPRY V+++G++E + SW A GWAARI
Sbjct: 164 FVNPQLRVMDGRT-VQFQEACESICGFSATVPRYLSVEVSGVNEKAEAVSWQASGWAARI 222
Query: 121 IQHEMDHL 128
+QHEMDHL
Sbjct: 223 VQHEMDHL 230
>gi|414887885|tpg|DAA63899.1| TPA: hypothetical protein ZEAMMB73_573089 [Zea mays]
Length = 260
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 94/163 (57%), Gaps = 10/163 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMV 60
+I +M +VM+R GL+APQ+G+PLR I+ D +E S + DI+ + + F +V
Sbjct: 98 VIDRMVDVMRRAPGVGLAAPQIGVPLR--IIVLEDTQEYISYAPKKDIEAQDRRPFDLLV 155
Query: 61 WINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
INP++K K TAL EGC S+ +A V R+ V+++GLD G A GW A
Sbjct: 156 IINPKIK---STSKRTALFFEGCLSVDGYRAVVERHLDVEVSGLDRNGSTMKVRASGWQA 212
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
RI+QHE DHL+G L+ D M+ ++ V D+ L G +L +
Sbjct: 213 RILQHECDHLEGTLYVDKMVARTFRVVENLDLPLPTGCPQLGF 255
>gi|226510000|ref|NP_001140879.1| uncharacterized protein LOC100272955 precursor [Zea mays]
gi|194701558|gb|ACF84863.1| unknown [Zea mays]
gi|414887886|tpg|DAA63900.1| TPA: hypothetical protein ZEAMMB73_573089 [Zea mays]
Length = 256
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 10/161 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMV 60
+I +M +VM+R GL+APQ+G+PLR I+ D +E S + DI+ + + F +V
Sbjct: 98 VIDRMVDVMRRAPGVGLAAPQIGVPLR--IIVLEDTQEYISYAPKKDIEAQDRRPFDLLV 155
Query: 61 WINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
INP++K K TAL EGC S+ +A V R+ V+++GLD G A GW A
Sbjct: 156 IINPKIK---STSKRTALFFEGCLSVDGYRAVVERHLDVEVSGLDRNGSTMKVRASGWQA 212
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLEL 159
RI+QHE DHL+G L+ D M+ ++ V D+ L G +L
Sbjct: 213 RILQHECDHLEGTLYVDKMVARTFRVVENLDLPLPTGCPQL 253
>gi|380796925|gb|AFE70338.1| peptide deformylase, mitochondrial precursor, partial [Macaca
mulatta]
Length = 105
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 52 EMQAFPHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSW 111
+M+ FP V++NP +++LD + VT EGC S+ A VPR++ VQ++GLD G+ +W
Sbjct: 6 QMEPFPLRVFVNPSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVAW 64
Query: 112 TAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
A GWAARIIQHEMDHL G LF D M ++ V W ++N
Sbjct: 65 QASGWAARIIQHEMDHLQGCLFIDKMDSRTFTNVYWMEVN 104
>gi|297844442|ref|XP_002890102.1| hypothetical protein ARALYDRAFT_334826 [Arabidopsis lyrata subsp.
lyrata]
gi|297335944|gb|EFH66361.1| hypothetical protein ARALYDRAFT_334826 [Arabidopsis lyrata subsp.
lyrata]
Length = 270
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMV 60
II M VM+ GL+APQ+G+PLR I+ D +E S + +I E + F MV
Sbjct: 112 IIDDMIKVMRLAPGVGLAAPQIGVPLR--IIVLEDTKEYISYAPKEEILAQERRHFDLMV 169
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP +K K K EGC S+ +A V RY +V +TG D GK A GW ARI
Sbjct: 170 MVNPVLKERSNK-KALFFEGCLSVNGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARI 228
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLEL 159
+QHE DHLDG L+ D M+P++ V D+ L G +L
Sbjct: 229 LQHECDHLDGNLYVDKMVPRTFRTVDNLDLPLAEGCPKL 267
>gi|78101135|pdb|1ZXZ|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As
Precipitant
gi|78101136|pdb|1ZXZ|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As
Precipitant
gi|78101137|pdb|1ZY0|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-6000
gi|78101138|pdb|1ZY0|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-6000
gi|78101139|pdb|1ZY1|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a) In Complex With Met-Ala-Ser
gi|78101140|pdb|1ZY1|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a) In Complex With Met-Ala-Ser
Length = 197
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMV 60
II M VM+ GL+APQ+G+PLR I+ D +E S + +I E + F MV
Sbjct: 34 IIDDMIKVMRLAPGVGLAAPQIGVPLR--IIVLEDTKEYISYAPKEEILAQERRHFDLMV 91
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP +K K K EGC S+ +A V RY +V +TG D GK A GW ARI
Sbjct: 92 MVNPVLKERSNK-KALFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARI 150
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLEL 159
+QHE DHLDG L+ D M+P++ V D+ L G +L
Sbjct: 151 LQHECDHLDGNLYVDKMVPRTFRTVDNLDLPLAEGCPKL 189
>gi|18394237|ref|NP_563974.1| peptide deformylase 1A [Arabidopsis thaliana]
gi|334302914|sp|Q9FV53.3|DEF1A_ARATH RecName: Full=Peptide deformylase 1A, chloroplastic; Short=AtDEF1;
Short=AtPDF1A; Short=PDF 1A; AltName: Full=Polypeptide
deformylase; Flags: Precursor
gi|11320952|gb|AAG33973.1|AF250959_1 peptide deformylase-like protein [Arabidopsis thaliana]
gi|332191194|gb|AEE29315.1| peptide deformylase 1A [Arabidopsis thaliana]
Length = 269
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMV 60
II M VM+ GL+APQ+G+PLR I+ D +E S + +I E + F MV
Sbjct: 111 IIDDMIKVMRLAPGVGLAAPQIGVPLR--IIVLEDTKEYISYAPKEEILAQERRHFDLMV 168
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP +K K K EGC S+ +A V RY +V +TG D GK A GW ARI
Sbjct: 169 MVNPVLKERSNK-KALFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARI 227
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLEL 159
+QHE DHLDG L+ D M+P++ V D+ L G +L
Sbjct: 228 LQHECDHLDGNLYVDKMVPRTFRTVDNLDLPLAEGCPKL 266
>gi|5103837|gb|AAD39667.1|AC007591_32 Simalar to gi|4377403 Polypeptide Deformylase from Chlamydia
pneumoniae genome gb|AE001687 [Arabidopsis thaliana]
gi|13605760|gb|AAK32873.1|AF361861_1 At1g15390/F9L1_34 [Arabidopsis thaliana]
gi|22136570|gb|AAM91071.1| At1g15390/F9L1_34 [Arabidopsis thaliana]
Length = 259
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMV 60
II M VM+ GL+APQ+G+PLR I+ D +E S + +I E + F MV
Sbjct: 101 IIDDMIKVMRLAPGVGLAAPQIGVPLR--IIVLEDTKEYISYAPKEEILAQERRHFDLMV 158
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP +K K K EGC S+ +A V RY +V +TG D GK A GW ARI
Sbjct: 159 MVNPVLKERSNK-KALFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARI 217
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLEL 159
+QHE DHLDG L+ D M+P++ V D+ L G +L
Sbjct: 218 LQHECDHLDGNLYVDKMVPRTFRTVDNLDLPLAEGCPKL 256
>gi|357455169|ref|XP_003597865.1| Peptide deformylase 1A [Medicago truncatula]
gi|124359186|gb|ABD28402.2| Formylmethionine deformylase [Medicago truncatula]
gi|355486913|gb|AES68116.1| Peptide deformylase 1A [Medicago truncatula]
Length = 266
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 8/153 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEES---FSEGDIKKFEMQAFPHMV 60
II M VM+ LSA ++G+PLR I+ +P+E+ ++E K + + F +V
Sbjct: 95 IIDGMILVMRNAPGISLSAQKIGIPLR--IIVLEEPKENLYNYTEEVNKIIDRRPFDLLV 152
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP++KI K EGC S+ QA V RY V++ G D G+P A GW ARI
Sbjct: 153 ILNPKLKIKSNK-TFLFFEGCLSVHGFQAVVERYLDVEVEGFDRYGEPIKINASGWHARI 211
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQ 153
+QHE DHLDG L+ D M+P++ W++IN+
Sbjct: 212 LQHECDHLDGTLYVDKMVPRTFR--SWENINMS 242
>gi|326489213|dbj|BAK01590.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 259
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 90/157 (57%), Gaps = 10/157 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMV 60
II QM VM++ GL+APQ+G+PL+ I+ D +E S + DI + F +V
Sbjct: 101 IIDQMIAVMRKAPGVGLAAPQIGVPLK--IIVLEDTQEYISYVSKEDIDAQDRCPFDLLV 158
Query: 61 WINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
INP++K K TA EGC S+ +A V R+ V+++GLD G+P A GW A
Sbjct: 159 VINPKLK---KTSKRTACFYEGCLSVDGYRAVVERHLDVEVSGLDRNGRPMKVEASGWQA 215
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
RI+QHE DHL+G L+ D M+P++ V ++ L G
Sbjct: 216 RILQHECDHLEGTLYVDKMVPRTFRTVDNLNLPLATG 252
>gi|195444659|ref|XP_002069969.1| GK11285 [Drosophila willistoni]
gi|194166054|gb|EDW80955.1| GK11285 [Drosophila willistoni]
Length = 173
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 83/138 (60%), Gaps = 12/138 (8%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPD------PEESFSEGDIKKFEMQAFPHMVW 61
M +V++ +D G++APQ+G+PLR+ ++ F + P E ++E + + F
Sbjct: 41 MVHVLRHYDCVGVAAPQIGVPLRIIVMEFHEGKKNQFPAEIYAERKMSTLSLAVF----- 95
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INPE++IL+ K EGC S++ A+V R+ +V++ G+ G P EGW+ARI
Sbjct: 96 INPELEILNDKQH-KHPEGCMSVRGYSAQVERHDRVRVKGIGMMGTPSELELEGWSARIA 154
Query: 122 QHEMDHLDGLLFTDSMLP 139
QHEMDHL+G+++ + LP
Sbjct: 155 QHEMDHLNGIIYIEFNLP 172
>gi|388499878|gb|AFK38005.1| unknown [Medicago truncatula]
Length = 267
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 87/157 (55%), Gaps = 10/157 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGD---IKKFEMQAFPHMV 60
II M VM++ GL+APQ+G+ R I+ D EE S +K + F +V
Sbjct: 109 IIDDMIRVMRKAPGVGLAAPQIGVSSR--IIVLEDTEEFISYAPKEVLKAQDRHPFDLLV 166
Query: 61 WINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
+NP++K K TAL EGC S+ +A V R+ V++TGLD G+ TA GW A
Sbjct: 167 ILNPKLK---STSKRTALFFEGCLSVDGFRAVVERHLDVEVTGLDRNGEQIKITASGWQA 223
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
RI+QHE DHLDG L+ D M+P++ V D+ L G
Sbjct: 224 RILQHECDHLDGTLYVDKMVPRTFRTVENMDLPLAQG 260
>gi|432107385|gb|ELK32785.1| Peptide deformylase, mitochondrial [Myotis davidii]
Length = 99
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 53 MQAFPHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWT 112
M+ FP V++NP +++LD + VT EGC S+ A VPR++ VQ++GLD G+ W
Sbjct: 1 MEPFPLRVFVNPSLRVLDSR-LVTFPEGCESVAGFLAYVPRFQAVQISGLDPRGEQVVWQ 59
Query: 113 AEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
A GWAARIIQHEMDHL G LF D M K+ + W ++N
Sbjct: 60 ASGWAARIIQHEMDHLQGCLFIDKMDSKTFTNIHWMEVN 98
>gi|449484173|ref|XP_004156806.1| PREDICTED: peptide deformylase 1A, chloroplastic-like isoform 1
[Cucumis sativus]
Length = 267
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 89/161 (55%), Gaps = 10/161 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMV 60
II M M++ GL+APQ+G+PLR I+ D +E S + +IK + ++F +V
Sbjct: 109 IIDDMILTMRKAPGVGLAAPQIGIPLR--IIVLEDTKEYISYAPKEEIKAQDRRSFDLLV 166
Query: 61 WINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
INP++K K TAL EGC S+ +A V RY V++ G D G P A GW A
Sbjct: 167 IINPKLK---SKSNKTALFFEGCLSVDGFRAVVERYLDVEVAGFDRDGNPIKVDASGWQA 223
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLEL 159
RI+QHE DHLDG L+ D M+P++ + L G +L
Sbjct: 224 RILQHECDHLDGTLYVDKMVPRTFRTTENLTLPLAEGCPKL 264
>gi|449468998|ref|XP_004152208.1| PREDICTED: LOW QUALITY PROTEIN: peptide deformylase 1A,
chloroplastic-like [Cucumis sativus]
Length = 267
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 89/161 (55%), Gaps = 10/161 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMV 60
II M M++ GL+APQ+G+PLR I+ D +E S + +IK + ++F +V
Sbjct: 109 IIDDMILTMRKAPGVGLAAPQIGIPLR--IIVLEDTKEYISYAPKEEIKAQDRRSFDLLV 166
Query: 61 WINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
INP++K K TAL EGC S+ +A V RY V++ G D G P A GW A
Sbjct: 167 IINPKLK---SKSNKTALFFEGCLSVDGFRAVVERYLDVEVAGFDRDGNPIKVDASGWQA 223
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLEL 159
RI+QHE DHLDG L+ D M+P++ + L G +L
Sbjct: 224 RILQHECDHLDGTLYVDKMVPRTFRTTENLTLPLAEGCPKL 264
>gi|440905403|gb|ELR55780.1| Peptide deformylase, mitochondrial, partial [Bos grunniens mutus]
Length = 182
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 76/133 (57%), Gaps = 9/133 (6%)
Query: 24 QVGLPLRLFIVAFP-------DPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVT 76
QVG P L VA P PE G + +M+ FP V++NP +++LD + VT
Sbjct: 31 QVGDPA-LRAVAAPVEPAQLAGPELQRPGGGAEARQMEPFPLRVFVNPSLRVLDSR-LVT 88
Query: 77 ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
EGC S+ A VPR++ VQ++GLD G+ W A GWAARIIQHEMDHL G LF D
Sbjct: 89 FPEGCESVAGFLACVPRFQAVQISGLDPRGEQVVWQASGWAARIIQHEMDHLQGCLFIDK 148
Query: 137 MLPKSLECVCWQD 149
M K+ + W +
Sbjct: 149 MDSKTFTNIHWME 161
>gi|291390393|ref|XP_002711708.1| PREDICTED: peptide deformylase-like [Oryctolagus cuniculus]
Length = 126
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 52 EMQAFPHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSW 111
+M+ FP V +NP +++LD + VT EGC S+ A VPR++ VQ++GLD G+ W
Sbjct: 27 QMEPFPLRVLVNPSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPRGEQVVW 85
Query: 112 TAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
A GW ARIIQHEMDHL G LF D M +S V W ++N
Sbjct: 86 PASGWTARIIQHEMDHLQGCLFIDKMDSRSFTNVHWMEVN 125
>gi|338534588|ref|YP_004667922.1| peptide deformylase [Myxococcus fulvus HW-1]
gi|337260684|gb|AEI66844.1| peptide deformylase [Myxococcus fulvus HW-1]
Length = 199
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 79/139 (56%), Gaps = 2/139 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVA-FPDPEESFSEGDIKKFEMQAFPHMVWI 62
+I QM++ M+ GL+APQVG+ LRL +V + + SE +++ E + P V I
Sbjct: 33 LIEQMRDTMRDAPGVGLAAPQVGIGLRLVVVEDRAEYQAGLSEKELEARERKPVPFHVLI 92
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP + + D EGC S+ A V R V++ LDE GKP + A GW ARI+Q
Sbjct: 93 NPTLVVEDAA-PAEFHEGCLSVTGFAALVARASAVRVEALDEHGKPVTLRARGWYARILQ 151
Query: 123 HEMDHLDGLLFTDSMLPKS 141
HE+DHLDG L+ D M +S
Sbjct: 152 HELDHLDGTLYVDRMETRS 170
>gi|374312869|ref|YP_005059299.1| peptide deformylase [Granulicella mallensis MP5ACTX8]
gi|358754879|gb|AEU38269.1| peptide deformylase [Granulicella mallensis MP5ACTX8]
Length = 191
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 92/161 (57%), Gaps = 13/161 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVA-FPDPEESFSEGDIKKFEMQAFPHMVWI 62
+I M+ ++ GL+APQVG L+L ++ + ++ +E ++K+ A P V +
Sbjct: 33 LIDYMRETVRDAPGVGLAAPQVGESLQLAVIEDKAEYHKNLTEAEMKERGRAAVPFHVLV 92
Query: 63 NPEMKILDYKDKVTA--LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP +L+ + + TA EGC SL A VPR ++V++TGLD G+P A GW ARI
Sbjct: 93 NP---VLEVRGESTATFFEGCLSLPGFTALVPRAKEVRVTGLDHRGEPRVIEASGWYARI 149
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECV-----CWQD--INLQN 154
+QHE+DHL G L+ D M +S + W+D I++QN
Sbjct: 150 LQHEIDHLHGTLYIDRMHARSFSSLENYTRHWKDRSIDVQN 190
>gi|354493218|ref|XP_003508740.1| PREDICTED: peptide deformylase, mitochondrial-like, partial
[Cricetulus griseus]
Length = 105
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 52 EMQAFPHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSW 111
+M+ FP V +NP +++LD + VT EGC S+ A VPR++ VQ++GL+ G+P W
Sbjct: 6 QMEPFPLHVLVNPSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLNPRGEPVVW 64
Query: 112 TAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
+A GW ARIIQHEMDHL G LF D M + + W ++N
Sbjct: 65 SASGWTARIIQHEMDHLQGCLFIDKMDSGTFTNLHWMEVN 104
>gi|405351354|ref|ZP_11022837.1| Peptide deformylase [Chondromyces apiculatus DSM 436]
gi|397093245|gb|EJJ23968.1| Peptide deformylase [Myxococcus sp. (contaminant ex DSM 436)]
Length = 200
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 6/141 (4%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVA-FPDPEESFSEGDIKKFEMQAFPHMVWI 62
+I QM++ M+ GL+APQVG+ LRL +V + + S D+ E V I
Sbjct: 33 LIEQMRDTMRDAPGVGLAAPQVGVGLRLIVVEDRAEYQTGLSAKDLAARERSPVAFHVLI 92
Query: 63 NPEMKILDYKDKVTA--LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP++ + +D TA EGC S+ A V R R V++ LDE G P + A GW ARI
Sbjct: 93 NPKLVV---EDATTAEFHEGCLSVSGYAALVARARGVRVEALDERGAPVTVRARGWYARI 149
Query: 121 IQHEMDHLDGLLFTDSMLPKS 141
+QHE+DHLDG L+ D M +S
Sbjct: 150 LQHELDHLDGALYVDRMESRS 170
>gi|317106741|dbj|BAJ53237.1| JHL06P13.18 [Jatropha curcas]
Length = 274
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 86/157 (54%), Gaps = 10/157 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMV 60
II M M+ GL+APQ+G+PLR I+ D +E + + K + + F +V
Sbjct: 116 IIDDMIKAMRMAPGVGLAAPQIGVPLR--IIVLEDTKEYIRYAPKEETKAQDRRPFDLLV 173
Query: 61 WINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
+NP+ L+ K TA EGC S+ +A V RY V++TGL G+P A GW A
Sbjct: 174 ILNPK---LEKKSNRTAFFFEGCLSVDGFRAVVERYLDVEVTGLSRYGQPIKVNASGWQA 230
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
RI+QHE DHLDG L+ D M+P++ + D+ L G
Sbjct: 231 RILQHECDHLDGTLYVDKMVPRTFRTIENLDLPLAEG 267
>gi|344248651|gb|EGW04755.1| Peptide deformylase, mitochondrial [Cricetulus griseus]
Length = 99
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 53 MQAFPHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWT 112
M+ FP V +NP +++LD + VT EGC S+ A VPR++ VQ++GL+ G+P W+
Sbjct: 1 MEPFPLHVLVNPSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLNPRGEPVVWS 59
Query: 113 AEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
A GW ARIIQHEMDHL G LF D M + + W ++N
Sbjct: 60 ASGWTARIIQHEMDHLQGCLFIDKMDSGTFTNLHWMEVN 98
>gi|351725187|ref|NP_001235292.1| uncharacterized protein LOC100306710 [Glycine max]
gi|255629341|gb|ACU15015.1| unknown [Glycine max]
Length = 223
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 82/146 (56%), Gaps = 10/146 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEES---FSEGDIKKFEMQAFPHMV 60
II M VM++ GL+APQ+G+PLR I+ D + +S ++K + F +V
Sbjct: 65 IIDDMVRVMRKAPGVGLAAPQIGIPLR--IIVLEDKIQYMAYYSNQELKAQDRTPFDLLV 122
Query: 61 WINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
+NP++K + TAL EGC S+ A V RY V++ G D G+P A GW A
Sbjct: 123 ILNPKLKNTTTR---TALFFEGCLSVPGYSAVVERYLDVEVAGFDRYGEPIKINATGWQA 179
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLEC 144
RI+QHE DHLDG L+ D M+P++
Sbjct: 180 RILQHECDHLDGTLYVDKMVPRTFRA 205
>gi|108759554|ref|YP_631592.1| peptide deformylase [Myxococcus xanthus DK 1622]
gi|108463434|gb|ABF88619.1| peptide deformylase [Myxococcus xanthus DK 1622]
Length = 201
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 2/140 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVA-FPDPEESFSEGDIKKFEMQAFPHMVWI 62
+I QM++ M+ GL+APQVG+ LR+ ++ P+ + SE + + P V I
Sbjct: 33 LIEQMRDTMRDAPGVGLAAPQVGVGLRVVVIEDRPEYQAGLSESERAARGRKPVPFHVLI 92
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP + + D EGC S+ A VPR V++ LDE G+P + A GW ARI+Q
Sbjct: 93 NPRLVVEDAA-PAEFHEGCLSVSGFAALVPRACAVRVDALDEHGQPVTVQARGWYARILQ 151
Query: 123 HEMDHLDGLLFTDSMLPKSL 142
HE+DHLDG L+ D M +S
Sbjct: 152 HELDHLDGTLYVDRMETRSF 171
>gi|320108553|ref|YP_004184143.1| peptide deformylase [Terriglobus saanensis SP1PR4]
gi|319927074|gb|ADV84149.1| peptide deformylase [Terriglobus saanensis SP1PR4]
Length = 187
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHMVWI 62
++ M+ M R GL+APQ+G L+L ++ P + +E ++K+++ + ++
Sbjct: 33 LVKNMRETMWRAPGVGLAAPQIGESLQLAVLEGRPQFHKKMNEAEVKEWQSTPYDYLAIF 92
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP++++L V+A EGC S+ A VPR + V++T L+E +P AEGW ARI+Q
Sbjct: 93 NPKIELLP--AHVSAYEGCLSIPGFMASVPRSQSVRVTCLNEKAEPQVIEAEGWFARILQ 150
Query: 123 HEMDHLDGLLFTDSM 137
HE+DHL+G+L+ D M
Sbjct: 151 HEIDHLNGVLYIDRM 165
>gi|296130447|ref|YP_003637697.1| Peptide deformylase [Cellulomonas flavigena DSM 20109]
gi|296022262|gb|ADG75498.1| Peptide deformylase [Cellulomonas flavigena DSM 20109]
Length = 230
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 73/138 (52%), Gaps = 8/138 (5%)
Query: 10 NVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWINPEMKI 68
M+ GL+APQ+GLPL L +V P +G+ + E P+ V +NP
Sbjct: 63 RTMRAAPGVGLAAPQIGLPLALAVVEDP----GTGDGEAARVRERPVLPYRVLVNPTYA- 117
Query: 69 LDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
D++ A EGC S++ QA VPR R V LTGLDETG GW ARI+QHE DH
Sbjct: 118 -PAGDELVAFYEGCLSVEGYQAVVPRQRAVHLTGLDETGATLDEVVTGWPARIVQHETDH 176
Query: 128 LDGLLFTDSMLPKSLECV 145
L G L+ D L +SL
Sbjct: 177 LHGTLYLDRALTRSLSAT 194
>gi|442321494|ref|YP_007361515.1| peptide deformylase [Myxococcus stipitatus DSM 14675]
gi|441489136|gb|AGC45831.1| peptide deformylase [Myxococcus stipitatus DSM 14675]
Length = 200
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 2/140 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVA-FPDPEESFSEGDIKKFEMQAFPHMVWI 62
+I+ M++ M+ GL+APQVG+ LRL ++ + + + D+ E P V I
Sbjct: 33 LIVLMRDTMRDAPGVGLAAPQVGVGLRLVVIEDRSEYQAGVAPADLADRERTPVPFHVLI 92
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP++ + D EGC S+ A V R R V++ LDE G+P + A GW ARI+Q
Sbjct: 93 NPKLTVED-PAPAEFYEGCLSVSGFAALVARARGVRVDALDEQGRPVTIHARGWYARILQ 151
Query: 123 HEMDHLDGLLFTDSMLPKSL 142
HE+DHLDG L+ D M +S
Sbjct: 152 HELDHLDGTLYVDRMETRSF 171
>gi|383456702|ref|YP_005370691.1| peptide deformylase [Corallococcus coralloides DSM 2259]
gi|380732545|gb|AFE08547.1| peptide deformylase [Corallococcus coralloides DSM 2259]
Length = 208
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 2/142 (1%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVA-FPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M++ M+ GL+APQVG+ LRL ++ + + S D+ E V
Sbjct: 31 RRLIQLMRDTMRDAPGVGLAAPQVGVGLRLVVIEDRAEYQAGASPADLALRERAPVAFHV 90
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP++ + D + EGC S+ L A V R R V++ LDE G+P + +A GW ARI
Sbjct: 91 LINPKLVVED-PTPMEFHEGCLSVNGLAALVARARGVRVEALDENGQPVTVSARGWYARI 149
Query: 121 IQHEMDHLDGLLFTDSMLPKSL 142
IQHE+DHLDG L+ D M +SL
Sbjct: 150 IQHELDHLDGTLYVDRMETRSL 171
>gi|224054132|ref|XP_002298107.1| peptide deformylase [Populus trichocarpa]
gi|222845365|gb|EEE82912.1| peptide deformylase [Populus trichocarpa]
Length = 299
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 10/160 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMV 60
II M VM+ GL+APQ+G+PLR I+ D E + + K + + F +V
Sbjct: 141 IIDDMVKVMRMAPGVGLAAPQIGIPLR--IIVLEDTAEYIGYAPKNETKAQDRRPFDLLV 198
Query: 61 WINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
+NP++K K TA EGC S+ +A V R+ V++ GL G+P A GW A
Sbjct: 199 IVNPKLK---KKSNRTAFFFEGCLSVDGFRAIVERHLDVEVIGLSRDGQPIKVDASGWQA 255
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLE 158
RI+QHE DHL+G L+ D M+P++ V D+ L G E
Sbjct: 256 RILQHECDHLEGTLYVDKMVPRTFRTVENLDLPLAEGCPE 295
>gi|336319978|ref|YP_004599946.1| Peptide deformylase [[Cellvibrio] gilvus ATCC 13127]
gi|336103559|gb|AEI11378.1| Peptide deformylase [[Cellvibrio] gilvus ATCC 13127]
Length = 216
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 81/146 (55%), Gaps = 6/146 (4%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPD-PEESFSEGDIKKFEMQAFPHM 59
+ ++ M M+ GL+APQV LPL L +V P P E+ +E +++ AF
Sbjct: 50 LAALLALMHRTMRAAPGVGLAAPQVALPLALAVVEDPGVPSETLTE--VRERAPLAF--R 105
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V +NP + + ++ + EGC S+ + QA V R+R V+LTG DETG+ GWAAR
Sbjct: 106 VLVNPGYEAVS-GERASFYEGCLSVPAYQAVVARHRAVRLTGFDETGRALDEVVTGWAAR 164
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECV 145
I+QHE DHL G L+ D +SL
Sbjct: 165 IVQHETDHLRGTLYLDRAELRSLAAA 190
>gi|429753279|ref|ZP_19286088.1| peptide deformylase [Capnocytophaga sp. oral taxon 326 str. F0382]
gi|429173945|gb|EKY15450.1| peptide deformylase [Capnocytophaga sp. oral taxon 326 str. F0382]
Length = 193
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 10/167 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFP-- 57
+K +I M + M+ GL+APQVGL +RLF+V A P F+E D E QAF
Sbjct: 27 LKALIANMYDTMRHAYGVGLAAPQVGLAIRLFVVDASP-----FAEDDDLTPEEQAFLKT 81
Query: 58 -HMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
+IN ++ + DK EGC S+ ++ V RY+++ + LDE KP + T +G
Sbjct: 82 FQKTFINAKI-TEETGDKWNFNEGCLSIPGVREDVNRYKQITIEYLDEDFKPQTLTLDGL 140
Query: 117 AARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
AARI+QHE DH++G+LFTD + + + + N+ G +++ Y M
Sbjct: 141 AARIVQHEYDHIEGILFTDKLSAFKKQLIKSKLNNIMKGKVKVDYRM 187
>gi|94970942|ref|YP_592990.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345]
gi|94552992|gb|ABF42916.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345]
Length = 208
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 81/139 (58%), Gaps = 10/139 (7%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQ-----AFPH 58
+I M++ ++ GL+APQVG+P++L I+ + +S+ DI ++ P
Sbjct: 45 LIEDMRDTLEDAPGVGLAAPQVGVPIQLAII---EDRAEYSK-DIPTEQLAERGRVPVPF 100
Query: 59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
V INP +K L K +V EGC S+ A VPRYRKV++T LDE G A GW A
Sbjct: 101 HVIINPVLKPLG-KSQVDFFEGCLSVAGFIAVVPRYRKVRVTCLDENGAQRRIEASGWYA 159
Query: 119 RIIQHEMDHLDGLLFTDSM 137
RI+QHE+DHL+G L+ D M
Sbjct: 160 RILQHEIDHLNGTLYVDRM 178
>gi|168007592|ref|XP_001756492.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692531|gb|EDQ78888.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 191
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 83/141 (58%), Gaps = 5/141 (3%)
Query: 5 ILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQ---AFPHMVW 61
I M +VM+ GL+APQ+G+PL+ I+ D +E S ++ E Q F +V
Sbjct: 29 INDMVDVMRAGPGVGLAAPQIGVPLQ--IIVLEDTKELMSYTSPEECEAQQRSPFDLLVI 86
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP+++ + + EGC S++ +A V R+ +V++TGL G+P TA+GW ARI+
Sbjct: 87 INPKIEKKEGRGTAYFFEGCLSVEGYRALVERHSEVEVTGLGRDGRPLHLTAKGWKARIL 146
Query: 122 QHEMDHLDGLLFTDSMLPKSL 142
QHE DHL G L+ D M+ ++
Sbjct: 147 QHEYDHLQGTLYVDKMVKRTF 167
>gi|213963665|ref|ZP_03391916.1| peptide deformylase [Capnocytophaga sputigena Capno]
gi|213953660|gb|EEB64991.1| peptide deformylase [Capnocytophaga sputigena Capno]
Length = 193
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 94/167 (56%), Gaps = 10/167 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFP-- 57
+K +I M + M+ GL+APQVGL +RLF+V A P F+E D E QAF
Sbjct: 27 LKALIANMYDTMRHAYGVGLAAPQVGLAIRLFVVDASP-----FAEDDDLTAEEQAFLKT 81
Query: 58 -HMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
+IN ++ + DK EGC S+ ++ V R++++ + LDE KP + T +G
Sbjct: 82 FQKTFINAKI-TEETGDKWNFNEGCLSIPGVREDVSRHKQITIEYLDEDFKPQTLTLDGL 140
Query: 117 AARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
AARI+QHE DH++G+LFTD + + + + N+ G +++ Y M
Sbjct: 141 AARIVQHEYDHIEGILFTDKLSAFKKQLIKTKLNNIMKGKVKVDYRM 187
>gi|168014244|ref|XP_001759662.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689201|gb|EDQ75574.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 194
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 83/141 (58%), Gaps = 5/141 (3%)
Query: 5 ILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQ---AFPHMVW 61
I M +VM+ GL+APQ+G+PL+ I+ D +E S ++ E Q F +V
Sbjct: 30 INDMVDVMRAGPGVGLAAPQIGIPLQ--IIVLEDTKELMSYTSPEECEAQQRTPFDLLVI 87
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP++++ EGC S+ +A V R+ +V++TGL G+P +TA+GW ARI+
Sbjct: 88 INPKLEMKASGGTAFFFEGCLSVAGHRALVERHLEVEVTGLGRDGQPLHFTAKGWKARIL 147
Query: 122 QHEMDHLDGLLFTDSMLPKSL 142
QHE DHL GLL+ D M+ ++
Sbjct: 148 QHEYDHLQGLLYVDRMVKRTF 168
>gi|357455171|ref|XP_003597866.1| Peptide deformylase 1A [Medicago truncatula]
gi|355486914|gb|AES68117.1| Peptide deformylase 1A [Medicago truncatula]
Length = 295
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 91/190 (47%), Gaps = 46/190 (24%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLF------------------------------- 32
II M VM++ G++APQ+G+PLR+
Sbjct: 98 IIDDMILVMRKAPGVGVAAPQIGIPLRMILEPPPRSFGPFVIRFRYRATHHLYSRTKPNS 157
Query: 33 -----IVAFPDPEESF---SEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL--EGCA 82
I+ D EE +E + K + + F +V +NP++K K TA EGC
Sbjct: 158 VGREWIIVLEDKEEFICYNTEEETKAQDRRPFDLLVILNPKLK---NKSNRTAFFFEGCL 214
Query: 83 SLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSL 142
S+ QA V RY V++TG D G+P A GW ARI+QHE DHLDG L+ D M+P++
Sbjct: 215 SVDRFQALVERYLDVEVTGFDRYGEPIKINASGWQARILQHECDHLDGTLYVDKMVPRTF 274
Query: 143 ECVCWQDINL 152
W++++L
Sbjct: 275 R--SWKNVDL 282
>gi|406937229|gb|EKD70750.1| Peptide deformylase [uncultured bacterium]
Length = 178
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ MK+ MK G++APQ+G+ LR+ I F E ++ P +
Sbjct: 29 LKQLLQDMKDTMKEKGGVGIAAPQIGVNLRVMIFGF--------EKTVRYPNEALVPFTI 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++IL + + EGC S+ L+ +V R+ K++ +G DE G S TAE + ARI
Sbjct: 81 LINPIIEILS-TELIDGWEGCLSVPGLRGRVSRFLKIKYSGFDENGNSFSRTAENFHARI 139
Query: 121 IQHEMDHLDGLLF 133
+QHE DHLDG+LF
Sbjct: 140 VQHECDHLDGILF 152
>gi|334336222|ref|YP_004541374.1| peptide deformylase [Isoptericola variabilis 225]
gi|334106590|gb|AEG43480.1| Peptide deformylase [Isoptericola variabilis 225]
Length = 231
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 75/139 (53%), Gaps = 10/139 (7%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M+ M GL+APQVG+PL + +V E++ + D + E P+ V +NP +
Sbjct: 72 MRRTMHTAPGVGLAAPQVGIPLAIAVV-----EDAGAPADDPR-ERTPLPYRVLVNPRYE 125
Query: 68 IL----DYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
+ ++V EGC S++ QA V RYR V+LTG DETG GW ARI+QH
Sbjct: 126 PVPGPGGAPERVAFYEGCLSVRGWQAVVARYRSVRLTGQDETGAALDEVLTGWPARIVQH 185
Query: 124 EMDHLDGLLFTDSMLPKSL 142
E DHL G L+ D +SL
Sbjct: 186 ETDHLAGELYLDHAETRSL 204
>gi|449668276|ref|XP_002163626.2| PREDICTED: peptide deformylase, mitochondrial-like [Hydra
magnipapillata]
Length = 197
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 82/139 (58%), Gaps = 6/139 (4%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPE-----ESFSEGDIKKFEMQAF 56
K +I +M +M+ G++APQVG+ L++ + F + + + + + +++K +M+ F
Sbjct: 49 KDLITKMILIMRSNKGQGIAAPQVGVDLQVIAIEFTEHDLEMATKQYGKNEVEKRQMRTF 108
Query: 57 PHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
P ++INP++KI++Y+ EGC S+ V RYR+VQL ++E G +GW
Sbjct: 109 PLHIFINPKLKIINYETTCFE-EGCLSILGTVGVVQRYREVQLEFVNEKGVNVLMNFDGW 167
Query: 117 AARIIQHEMDHLDGLLFTD 135
AR++QHEM HL G L D
Sbjct: 168 LARMVQHEMHHLKGFLIVD 186
>gi|254431098|ref|ZP_05044801.1| peptide deformylase [Cyanobium sp. PCC 7001]
gi|197625551|gb|EDY38110.1| peptide deformylase [Cyanobium sp. PCC 7001]
Length = 180
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ +++ M D GL+APQ+G+ LR+ I F + + E P V
Sbjct: 31 LSALLDDLRDTMAARDGAGLAAPQIGVALRVVIFGF--------TTNPRYPEAPPIPDTV 82
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L + + EGC S+ L+ VPR+ +++ TGLDE G+P EG+ AR+
Sbjct: 83 LINPVLTPLGSA-RSSGWEGCLSVPGLRGLVPRWDRIRYTGLDEQGRPLQREVEGFHARV 141
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHE DHLDG+LF D +
Sbjct: 142 VQHECDHLDGVLFPDRI 158
>gi|289164094|ref|YP_003454232.1| polypeptide deformylase [Legionella longbeachae NSW150]
gi|288857267|emb|CBJ11094.1| putative polypeptide deformylase [Legionella longbeachae NSW150]
Length = 222
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 8/144 (5%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVW 61
K +I M + +++ GL+APQV P R+ + P+ E + +IK F +P +
Sbjct: 54 KDLIAAMSSKLQKLGGVGLAAPQVNFPRRIIAIYIPE-EAALLRDNIKSF----YPMHIM 108
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP ++ EGC S+ S KVPRY ++ ++ DE G+ T EG+ +R++
Sbjct: 109 INPSYTPVEGSAIQHDFEGCYSVASKSGKVPRYEQINVSYYDELGQFHRQTEEGFYSRVL 168
Query: 122 QHEMDHLDGLLFTDSMLPKSLECV 145
QHE+DHL+G L D + P +CV
Sbjct: 169 QHEIDHLNGFLIIDRLTP---DCV 189
>gi|270157521|ref|ZP_06186178.1| polypeptide deformylase [Legionella longbeachae D-4968]
gi|269989546|gb|EEZ95800.1| polypeptide deformylase [Legionella longbeachae D-4968]
Length = 219
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 8/144 (5%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVW 61
K +I M + +++ GL+APQV P R+ + P+ E + +IK F +P +
Sbjct: 51 KDLIAAMSSKLQKLGGVGLAAPQVNFPRRIIAIYIPE-EAALLRDNIKSF----YPMHIM 105
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP ++ EGC S+ S KVPRY ++ ++ DE G+ T EG+ +R++
Sbjct: 106 INPSYTPVEGSAIQHDFEGCYSVASKSGKVPRYEQINVSYYDELGQFHRQTEEGFYSRVL 165
Query: 122 QHEMDHLDGLLFTDSMLPKSLECV 145
QHE+DHL+G L D + P +CV
Sbjct: 166 QHEIDHLNGFLIIDRLTP---DCV 186
>gi|404484966|ref|ZP_11020170.1| peptide deformylase [Barnesiella intestinihominis YIT 11860]
gi|404339971|gb|EJZ66402.1| peptide deformylase [Barnesiella intestinihominis YIT 11860]
Length = 188
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 10/162 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M + GL+APQ+GL +RL ++ E F E D+K +
Sbjct: 27 LKELIENMYETMYATEGIGLAAPQIGLSIRLIVIDVNPMAEYFPECADVK---------L 77
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
INP ++ L+ K T EGC SL + VPR K++L LDE +P EG+ AR
Sbjct: 78 TLINPVLEALEDGSKETREEGCLSLPGIHEPVPRIEKIRLKWLDENFQPHDEVIEGYLAR 137
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
++QHE DHL+G +F D + P + + + N+ G + Y
Sbjct: 138 VVQHEYDHLEGKVFIDRISPIRKQLIKSKLTNIIKGKVRCDY 179
>gi|302830440|ref|XP_002946786.1| hypothetical protein VOLCADRAFT_120388 [Volvox carteri f.
nagariensis]
gi|300267830|gb|EFJ52012.1| hypothetical protein VOLCADRAFT_120388 [Volvox carteri f.
nagariensis]
Length = 257
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 11/151 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEES---------FSEGDIKKF 51
++ ++ M +VM+ GL+APQ+G P R+ ++ D EE + + +
Sbjct: 76 LRNLVATMTSVMRAAPGVGLAAPQIGEPWRVIVLE--DREEYIVRQAASGMYDDDTLAAM 133
Query: 52 EMQAFPHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSW 111
E +AF +V +NP + EGC S++ A VPRYR V+L +D G P
Sbjct: 134 ERRAFGPLVLVNPRGLRPVGHEGAAFFEGCLSVRGYVAVVPRYRIVELEAVDPAGLPVVV 193
Query: 112 TAEGWAARIIQHEMDHLDGLLFTDSMLPKSL 142
A GW ARI+QHE DHL G+L+ D M S
Sbjct: 194 RASGWMARILQHEFDHLQGILYVDRMAATSF 224
>gi|303281244|ref|XP_003059914.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458569|gb|EEH55866.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 185
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 10/132 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSE---GDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
GL+APQ+G+P R+F++ D EE S+ D++ + + F V INP ++ +
Sbjct: 44 GLAAPQIGVPYRIFVLE--DTEEGMSDVSKKDLEAMDRKPFAAKVVINP---VVTPVSNL 98
Query: 76 TA--LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLF 133
+A EGC S++ + V RY +V++TG G P + A GW ARI+QHEMDHL+G+L+
Sbjct: 99 SAAFFEGCLSVQGYRGLVRRYLEVRVTGYGGDGSPVDFVARGWQARIVQHEMDHLNGVLY 158
Query: 134 TDSMLPKSLECV 145
D M ++ V
Sbjct: 159 VDRMDTRTFRRV 170
>gi|406917422|gb|EKD56220.1| Peptide deformylase [uncultured bacterium]
Length = 165
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 82/138 (59%), Gaps = 4/138 (2%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+IL M + GL+APQ+G ++L ++ F DP + +++ ++ K + P + +N
Sbjct: 30 LILNMVETLHANKGVGLAAPQIGKNIKLIVIEF-DPVKYYNKEELTKKSNKPIPLTILVN 88
Query: 64 PEMKILDY-KDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
P KI+ Y DK T +EGC S ++ +V R +K+++ D +GK A + AR++Q
Sbjct: 89 P--KIISYSNDKTTEIEGCLSCPEVEVEVIRSKKIKIISQDISGKRIKIKASDFYARVLQ 146
Query: 123 HEMDHLDGLLFTDSMLPK 140
HE+DHL+G+L TD++ K
Sbjct: 147 HEIDHLNGILITDNIKTK 164
>gi|295835488|ref|ZP_06822421.1| peptide deformylase [Streptomyces sp. SPB74]
gi|295825514|gb|EFG64289.1| peptide deformylase [Streptomyces sp. SPB74]
Length = 221
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 76/142 (53%), Gaps = 10/142 (7%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPD--PEESFSEGDIKKFE-MQAFPHMV 60
++ M+ M+ GL+APQ+G+PLRL ++ P PEE +++ + P+ V
Sbjct: 60 LLAAMRRTMREAPGVGLAAPQIGVPLRLAVLEDPATVPEE------VRRMRGREPLPYRV 113
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + + EGC S+ QA V R+ V+L DE G GWAARI
Sbjct: 114 LVNPHYAPAGER-RALFYEGCLSVPGWQAVVARHAVVRLRAEDEHGTALDEEVGGWAARI 172
Query: 121 IQHEMDHLDGLLFTDSMLPKSL 142
+QHE DHLDG L+ D LP+SL
Sbjct: 173 VQHETDHLDGTLYVDRALPRSL 194
>gi|444910252|ref|ZP_21230439.1| Peptide deformylase [Cystobacter fuscus DSM 2262]
gi|444719508|gb|ELW60302.1| Peptide deformylase [Cystobacter fuscus DSM 2262]
Length = 197
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEE---SFSEGDIKKFEMQAFPHMV 60
+I M++ M+ GL+APQVG+ +RL ++ D E ++ E + V
Sbjct: 33 LISLMRDTMRDAPGVGLAAPQVGVDVRLVVIE--DRAEYMAGLPAAELAAREREPVDFHV 90
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + + D EGC S+ A V R R V++ DE G+P S +A GW ARI
Sbjct: 91 LINPRLTVEDAT-PAEFQEGCLSVSGFLALVRRARGVRVEAFDEQGQPFSRSARGWYARI 149
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECV 145
+QHE+DHLDG L+ D M P+S +
Sbjct: 150 LQHEVDHLDGTLYIDRMEPRSFSTL 174
>gi|318057272|ref|ZP_07975995.1| peptide deformylase [Streptomyces sp. SA3_actG]
gi|318076700|ref|ZP_07984032.1| peptide deformylase [Streptomyces sp. SA3_actF]
Length = 214
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 84/162 (51%), Gaps = 15/162 (9%)
Query: 11 VMKRFDLFGLSAPQVGLPLRLFIVAFPD--PEESFSEGDIKKFEMQA-FPHMVWINPEMK 67
M+ GL+APQ+G+PLRL ++ P PEE +++ +A P+ V +NP +
Sbjct: 60 TMREAPGVGLAAPQIGVPLRLAVLEDPATVPEE------VRRVRERAPLPYRVLVNPVYE 113
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
+ + + EGC S+ QA V R+ V+L DE G+ GW+ARI+QHE DH
Sbjct: 114 GVGER-RAAFYEGCLSVPGWQAVVARHAVVRLRAEDEHGRALDEEVRGWSARIVQHETDH 172
Query: 128 LDGLLFTDSMLPKSLEC-----VCWQDINLQNGLLELRYYMS 164
LDG L+ D LP+SL W D + EL + ++
Sbjct: 173 LDGTLYVDRALPRSLTSNENLLRYWNDPAPERAAAELGFALN 214
>gi|53804337|ref|YP_113830.1| peptide deformylase [Methylococcus capsulatus str. Bath]
gi|53758098|gb|AAU92389.1| polypeptide deformylase [Methylococcus capsulatus str. Bath]
Length = 191
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 2/143 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVA-FPDPEESFSEGDIKKFEMQAFPHM 59
++ +I M+ M+ GL+APQ+G L+L ++ D S ++ + P
Sbjct: 35 VQALIGHMRETMRDAPGVGLAAPQIGQGLQLAVIEDRADYHRGLSAEELAARGREPVPFH 94
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V +NPE+ + ++ EGC SL A+V R R V+++ LD G+P + A GW AR
Sbjct: 95 VIVNPEI-VARSEETDVFHEGCLSLAGFSARVERARWVRVSCLDHRGEPQTIEASGWYAR 153
Query: 120 IIQHEMDHLDGLLFTDSMLPKSL 142
I+QHE+DHL G L+ D M P+S
Sbjct: 154 ILQHEIDHLHGRLYIDRMDPRSF 176
>gi|345855233|ref|ZP_08807983.1| peptide deformylase [Streptomyces zinciresistens K42]
gi|345633301|gb|EGX55058.1| peptide deformylase [Streptomyces zinciresistens K42]
Length = 207
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 70/127 (55%), Gaps = 10/127 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
G++APQVG+ LR+ ++ P P E G + + P V +NP + + +
Sbjct: 59 GVAAPQVGVALRIAVIEDPAPVPEEVRLVRGRVPQ------PFRVLVNPSYEAVGAA-RA 111
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+ QA V R +V+LTG DE G+P GW ARI+QHE DHLDG+L+ D
Sbjct: 112 AFFEGCLSVPGYQAVVARAAEVRLTGEDERGRPVDEVFSGWPARIVQHETDHLDGVLYLD 171
Query: 136 SMLPKSL 142
P+SL
Sbjct: 172 RAEPRSL 178
>gi|15807421|ref|NP_296154.1| peptide deformylase [Deinococcus radiodurans R1]
gi|23396556|sp|Q9RRQ4.1|DEF_DEIRA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|6460249|gb|AAF11975.1|AE002073_5 polypeptide deformylase [Deinococcus radiodurans R1]
Length = 232
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 19 GLSAPQVGLPLRLFI-VAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQ+GLP+R+F+ V + D EE +EG + V +NP +K+++ K +
Sbjct: 73 GLAAPQIGLPVRMFVAVEYADDEEE-NEGQETPLRSRVLREYVMLNPVVKVINKKKDKSY 131
Query: 78 LEGCASLKSL-QAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
EGC S+ + + VPR R+V++ D G+P S AE + AR+ QHE DHLDG LF D
Sbjct: 132 QEGCLSIPGIYEDGVPRARQVRVDYTDLDGQPRSIEAEDYLARVFQHETDHLDGKLFLDH 191
Query: 137 M 137
+
Sbjct: 192 L 192
>gi|302766631|ref|XP_002966736.1| hypothetical protein SELMODRAFT_85358 [Selaginella moellendorffii]
gi|300166156|gb|EFJ32763.1| hypothetical protein SELMODRAFT_85358 [Selaginella moellendorffii]
Length = 198
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ +M +VM R D GLSAPQVG+ RL + +PE +G V
Sbjct: 35 LKKLVDEMLDVMYRTDGVGLSAPQVGVNARLMVF---NPEGERGKGK----------EYV 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
++NP M + K++ EGC S S QA V R +++ D GK T GW ARI
Sbjct: 82 FVNP-MIVKFGKEREADREGCLSFYSAQADVERPISIRVEAQDINGKKFGTTFRGWTARI 140
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECV 145
QHE DHL+G+L+ D M PK+L +
Sbjct: 141 FQHEYDHLEGVLYIDRMTPKALNSI 165
>gi|302792493|ref|XP_002978012.1| hypothetical protein SELMODRAFT_108250 [Selaginella moellendorffii]
gi|300154033|gb|EFJ20669.1| hypothetical protein SELMODRAFT_108250 [Selaginella moellendorffii]
Length = 198
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ +M +VM R D GLSAPQVG+ RL + +PE +G V
Sbjct: 35 LKKLVDEMLDVMYRTDGVGLSAPQVGVNARLMVF---NPEGERGKGK----------EYV 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
++NP M + K++ EGC S S QA V R +++ D GK T GW ARI
Sbjct: 82 FVNP-MIVKFGKEREADREGCLSFYSAQADVERPISIRVEAQDINGKKFGTTFRGWTARI 140
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECV 145
QHE DHL+G+L+ D M PK+L +
Sbjct: 141 FQHEYDHLEGVLYIDRMTPKALNSI 165
>gi|329938533|ref|ZP_08287958.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045]
gi|329302506|gb|EGG46397.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045]
Length = 218
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 10/143 (6%)
Query: 5 ILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMVW 61
+ ++ M GL+APQVG+PLR+ ++ P P E + G + + P+ V
Sbjct: 57 LAALRATMHAAPGVGLAAPQVGVPLRIAVIEDPAPVPEEVRSARGRVPQ------PYRVL 110
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
+NP + + +++ EGC S+ QA V R+ +V+L GLD G GW ARI+
Sbjct: 111 VNPSYEAVG-EERAAFFEGCLSVPGWQAVVARHARVRLRGLDARGAVLDEEFAGWPARIV 169
Query: 122 QHEMDHLDGLLFTDSMLPKSLEC 144
QHE DHLDG L+ D P+SL
Sbjct: 170 QHETDHLDGTLYLDRAEPRSLST 192
>gi|288928223|ref|ZP_06422070.1| peptide deformylase [Prevotella sp. oral taxon 317 str. F0108]
gi|288331057|gb|EFC69641.1| peptide deformylase [Prevotella sp. oral taxon 317 str. F0108]
Length = 187
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 80/140 (57%), Gaps = 9/140 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M+ D GL+APQ+GL +RL +V E++ E K +AF
Sbjct: 27 LKELIQNMFETMEASDGIGLAAPQIGLDIRLLVVDLDVLAETYPE---YKGYRKAF---- 79
Query: 61 WINPEMKILDYKDKVTALE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
INP + +D + +LE GC SL + KV R+ ++++ +DE KP EG+ R
Sbjct: 80 -INPHIVEIDEQSPTESLEEGCLSLPGIHEKVTRHTRIRMQYVDEDLKPHDEWFEGYLTR 138
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE+DHLDG+LFTD + P
Sbjct: 139 VLQHEVDHLDGILFTDHLSP 158
>gi|333023046|ref|ZP_08451110.1| putative peptide deformylase [Streptomyces sp. Tu6071]
gi|332742898|gb|EGJ73339.1| putative peptide deformylase [Streptomyces sp. Tu6071]
Length = 214
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 9/166 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M+ M+ GL+APQ+G+PLRL ++ P + E + E + P+ V +N
Sbjct: 53 LLAAMRRTMREAPGVGLAAPQIGVPLRLAVLEDP---ATVPEEVRRVREREPLPYRVLVN 109
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + + + + EGC S+ QA V R+ V+L DE G+ GW ARI+QH
Sbjct: 110 PVCEGVGER-RAAFYEGCLSVPGWQAVVARHAVVRLRAEDEHGRGLDEEVRGWPARIVQH 168
Query: 124 EMDHLDGLLFTDSMLPKSLEC-----VCWQDINLQNGLLELRYYMS 164
E DHLDG L+ D LP+SL W D + EL + ++
Sbjct: 169 ETDHLDGTLYVDRALPRSLTSNENLLRYWNDPAPERAAAELGFALN 214
>gi|148360734|ref|YP_001251941.1| polypeptide deformylase [Legionella pneumophila str. Corby]
gi|296106200|ref|YP_003617900.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy]
gi|148282507|gb|ABQ56595.1| polypeptide deformylase [Legionella pneumophila str. Corby]
gi|295648101|gb|ADG23948.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy]
Length = 200
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVW 61
K +I MK + GL+APQV ++ V P+ E + + + FP +
Sbjct: 33 KDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPE------EAQLLRDNAKIFPMHIL 86
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP + L + ++ EGC S+ S KVPRY ++QL DE G G+ AR++
Sbjct: 87 INPNYEPLPHTRIISDFEGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQIENGFYARVL 146
Query: 122 QHEMDHLDGLLFTDSMLPKSLECV 145
QHE+DHL+G+L TD + P +CV
Sbjct: 147 QHEIDHLNGVLITDRLTP---DCV 167
>gi|378776554|ref|YP_005184991.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
ATCC 43290]
gi|364507368|gb|AEW50892.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
ATCC 43290]
Length = 229
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVW 61
K +I MK + GL+APQV ++ V P+ E + + + FP +
Sbjct: 62 KDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPE------EAQLLRDNAKIFPMHIL 115
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP + L + ++ EGC S+ S KVPRY ++QL DE G G+ AR++
Sbjct: 116 INPNYEPLPHTRIISDFEGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQIENGFYARVL 175
Query: 122 QHEMDHLDGLLFTDSMLPKSLECV 145
QHE+DHL+G+L TD + P +CV
Sbjct: 176 QHEIDHLNGVLITDRLTP---DCV 196
>gi|380302179|ref|ZP_09851872.1| N-formylmethionyl-tRNA deformylase [Brachybacterium squillarum
M-6-3]
Length = 237
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 76/138 (55%), Gaps = 5/138 (3%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M M+R GL+APQVG+PLRL +V + + E + P +P ++
Sbjct: 54 MTVTMRRAPGVGLAAPQVGIPLRLVVVEDAHASTPGEDPEDDLLERRPLPLRTLADPVLE 113
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQL--TGLDETGKPDSWTAE--GWAARIIQH 123
L +D V A EGC S+ ++ VPR R+V+L T LD G+ + E GW ARI+QH
Sbjct: 114 PLGEQD-VVAWEGCLSVSGWRSIVPRARRVRLRATELDAAGQGTAVEEEHLGWTARILQH 172
Query: 124 EMDHLDGLLFTDSMLPKS 141
E DHL G+L D M+P+S
Sbjct: 173 ETDHLHGVLCHDRMVPRS 190
>gi|313201227|ref|YP_004039885.1| peptide deformylase [Methylovorus sp. MP688]
gi|312440543|gb|ADQ84649.1| peptide deformylase [Methylovorus sp. MP688]
Length = 169
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 13/158 (8%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHM 59
+ +I M++ M + G++APQ+G+ LR+ I F G ++ + + P+
Sbjct: 21 LHALIKDMEDTMAHMNGAGIAAPQIGVSLRVVI---------FGVGKNPRYPDAEQVPYT 71
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V +NP ++ ++ D+ EGC S+ ++ VPRY ++ TG D+ G P G+ AR
Sbjct: 72 VLVNPTLQPVN-DDQEDGWEGCLSVPGMRGIVPRYVRLHYTGFDQYGNPIDRLVSGFHAR 130
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLL 157
++QHE DHLDG+L+ M + L +QD+ N L
Sbjct: 131 VVQHECDHLDGILY--PMRIRDLANFGFQDVLFPNADL 166
>gi|388455753|ref|ZP_10138048.1| polypeptide deformylase [Fluoribacter dumoffii Tex-KL]
Length = 201
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVW 61
K +I MK+ +++ GL+APQV R+ V P+ E ++ +F +P +
Sbjct: 33 KNLIAAMKSKLQQLGGVGLAAPQVNFSRRIIAVYIPE-EAGLLRDNVNQF----YPMHIM 87
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP + + + EGC S+ S KVPRY ++ ++ DE+G EG+ AR++
Sbjct: 88 INPSFEPVANSGQHYDFEGCYSVSSKSGKVPRYEQIIVSYYDESGTFHQQQEEGFYARVL 147
Query: 122 QHEMDHLDGLLFTDSMLPKSLECV 145
QHE+DHL+G L D + P +CV
Sbjct: 148 QHEIDHLNGFLILDRLTP---DCV 168
>gi|253999126|ref|YP_003051189.1| peptide deformylase [Methylovorus glucosetrophus SIP3-4]
gi|253985805|gb|ACT50662.1| peptide deformylase [Methylovorus glucosetrophus SIP3-4]
Length = 177
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 13/158 (8%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHM 59
+ +I M++ M + G++APQ+G+ LR+ I F G ++ + + P+
Sbjct: 29 LHALIKDMEDTMAHMNGAGIAAPQIGVSLRVVI---------FGVGKNPRYPDAEQVPYT 79
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V +NP ++ ++ D+ EGC S+ ++ VPRY ++ TG D+ G P G+ AR
Sbjct: 80 VLVNPTLQPVN-DDQEDGWEGCLSVPGMRGIVPRYVRLHYTGFDQYGNPIDRLVSGFHAR 138
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLL 157
++QHE DHLDG+L+ M + L +QD+ N L
Sbjct: 139 VVQHECDHLDGILY--PMRIRDLANFGFQDVLFPNADL 174
>gi|345011217|ref|YP_004813571.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
gi|344037566|gb|AEM83291.1| Peptide deformylase [Streptomyces violaceusniger Tu 4113]
Length = 227
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHMVWI 62
++ M+ M GL+APQ+G+PLRL ++ DP E +E +++ Q P+ V +
Sbjct: 49 LLAAMRETMHSAPGVGLAAPQIGVPLRLAVIE--DPAEVAAEVQEVRGRVPQ--PYRVLV 104
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP + + + + EGC S+ QA V R +++L G DETG+ GW ARI+Q
Sbjct: 105 NPGYEPVGHG-RAAFFEGCLSIPGWQAVVSRPDRIRLRGQDETGRELDEEFTGWPARIVQ 163
Query: 123 HEMDHLDGLLFTDSMLPKSLECV 145
HE DHLDG+L+ D +SL
Sbjct: 164 HETDHLDGVLYLDLAETRSLSTA 186
>gi|260912122|ref|ZP_05918678.1| peptide deformylase [Prevotella sp. oral taxon 472 str. F0295]
gi|260633728|gb|EEX51862.1| peptide deformylase [Prevotella sp. oral taxon 472 str. F0295]
Length = 187
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 80/140 (57%), Gaps = 9/140 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M+ D GL+APQ+GL +RL +V E++ E K +AF
Sbjct: 27 LKELIQNMFETMEASDGIGLAAPQIGLDIRLLVVDLDVLAETYPE---YKGYRKAF---- 79
Query: 61 WINPEMKILDYKDKVTALE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
INP + +D + +LE GC SL + KV R+ ++++ +DE +P EG+ R
Sbjct: 80 -INPHIVEIDKQSPTESLEEGCLSLPGIHEKVTRHTRIRVQYVDEDLQPHDEWFEGYLTR 138
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE+DHLDG+LFTD + P
Sbjct: 139 VLQHEVDHLDGILFTDHLSP 158
>gi|339018061|ref|ZP_08644204.1| peptide deformylase [Acetobacter tropicalis NBRC 101654]
gi|338752838|dbj|GAA07508.1| peptide deformylase [Acetobacter tropicalis NBRC 101654]
Length = 176
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 10/116 (8%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEG-DIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQV + RLF+ + P ES SEG D ++Q V INPE++ +D ++ +T
Sbjct: 47 GLAAPQVHVSKRLFLYSVP---ESRSEGVDDPAMDVQ-----VIINPELEPVD-EEMITR 97
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLF 133
EGC S+ + +VPRY++V+ G D TG A G+ A ++QHEMDHL+G+L+
Sbjct: 98 FEGCLSIPGWRGEVPRYKRVRYAGYDRTGNRVEGVASGFRAHVMQHEMDHLNGILY 153
>gi|298372481|ref|ZP_06982471.1| peptide deformylase [Bacteroidetes oral taxon 274 str. F0058]
gi|298275385|gb|EFI16936.1| peptide deformylase [Bacteroidetes oral taxon 274 str. F0058]
Length = 185
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 11/139 (7%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFP--DPEESFSEGDIKKFEMQAFP-HMV 60
+I M M+ D GL+APQ+GL +RLF++ D E F + ++ P +
Sbjct: 30 LIDNMFETMRNADGIGLAAPQIGLSIRLFVIDISPLDTERDFPQ-------LRDCPKQKI 82
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+IN E+ Y D V EGC S+ + KVPR K+++ LDET + EG+ AR+
Sbjct: 83 FINAEI-TERYGDTVIYEEGCLSIPKINEKVPRPDKIKIKYLDETFREHEDEFEGYFARV 141
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE DH+DG +F D + P
Sbjct: 142 IQHECDHIDGKMFVDHISP 160
>gi|307609411|emb|CBW98900.1| polypeptide deformylase [Legionella pneumophila 130b]
Length = 200
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVW 61
K +I MK + GL+APQV ++ V P+ E + + + FP +
Sbjct: 33 KDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPE------EAQLLRDNAKIFPMHIL 86
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP + L + ++ EGC S+ S KVPRY +++L DE G G+ AR++
Sbjct: 87 INPSYEPLPHTRIISDFEGCYSVSSKAGKVPRYDEIRLKYYDEEGNAHQQIENGFYARVL 146
Query: 122 QHEMDHLDGLLFTDSMLPKSLECV 145
QHE+DHL+G+L TD + P +CV
Sbjct: 147 QHEIDHLNGVLITDRLTP---DCV 167
>gi|372489323|ref|YP_005028888.1| peptide deformylase [Dechlorosoma suillum PS]
gi|359355876|gb|AEV27047.1| peptide deformylase [Dechlorosoma suillum PS]
Length = 182
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M+ M GL+APQ+G+ LRL + F D E + E A P V
Sbjct: 32 LAALIADMEATMVAEGGVGLAAPQIGVDLRLVVFGF-DSSERYPE-------APAIPFTV 83
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP+++ LD +++ EGC SL ++ VPR+++++ +G G+P EG+ AR+
Sbjct: 84 LLNPQLEPLDSEEE-EGWEGCLSLPGMRGWVPRWKRLRYSGFTPEGEPLERVVEGFHARV 142
Query: 121 IQHEMDHLDGLLF 133
+QHE DHLDGLL+
Sbjct: 143 VQHECDHLDGLLY 155
>gi|397663181|ref|YP_006504719.1| putative Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2)
[Legionella pneumophila subsp. pneumophila]
gi|395126592|emb|CCD04775.1| putative Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2)
[Legionella pneumophila subsp. pneumophila]
Length = 200
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVW 61
K +I MK + GL+APQV ++ V P+ E + + + FP +
Sbjct: 33 KDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPE------EAQLLRDNAKIFPMHIL 86
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP + L ++ EGC S+ S KVPRY ++QL DE G G+ AR++
Sbjct: 87 INPNYEPLPQTRIISDFEGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQIENGFYARVL 146
Query: 122 QHEMDHLDGLLFTDSMLPKSLECV 145
QHE+DHL+G+L TD + P +CV
Sbjct: 147 QHEIDHLNGVLITDRLTP---DCV 167
>gi|414343365|ref|YP_006984886.1| polypeptide deformylase [Gluconobacter oxydans H24]
gi|411028700|gb|AFW01955.1| polypeptide deformylase [Gluconobacter oxydans H24]
Length = 170
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 72/134 (53%), Gaps = 11/134 (8%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQV +PLRLFI P S E QA V
Sbjct: 29 IRRLIKDMLETMADARGAGLAAPQVHVPLRLFIYHVPANRVSDPE--------QAMLPRV 80
Query: 61 WINPEMKILDYKDKVT-ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
INPE I+ D++ EGC S+ L+ VPRY KV+ GLDE G P A G+ A
Sbjct: 81 LINPE--IIPVGDEMMLCSEGCLSIPGLRGDVPRYAKVRYRGLDENGDPVEGEAVGFHAN 138
Query: 120 IIQHEMDHLDGLLF 133
++QHE DHLDG+L+
Sbjct: 139 VLQHENDHLDGVLY 152
>gi|374991833|ref|YP_004967328.1| peptide deformylase [Streptomyces bingchenggensis BCW-1]
gi|297162485|gb|ADI12197.1| peptide deformylase [Streptomyces bingchenggensis BCW-1]
Length = 217
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M+ M+ GL+APQ+G+PLR+ ++ DP E +E + + P V +N
Sbjct: 49 LVRAMRETMQAAPGVGLAAPQIGIPLRIAVIE--DPAEVSAEVREARGRVP-LPFRVLVN 105
Query: 64 PEMK-ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
P + + D + EGC S+ QA V R +++L G DE G+ GW ARI+Q
Sbjct: 106 PSYEPVGDPGRRAAFFEGCLSVPGWQAVVARPERIRLRGQDERGRELDEEFAGWPARIVQ 165
Query: 123 HEMDHLDGLLFTDSMLPKSL 142
HE DHLDG L+ D +SL
Sbjct: 166 HETDHLDGTLYLDRAETRSL 185
>gi|302540288|ref|ZP_07292630.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653]
gi|302457906|gb|EFL20999.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653]
Length = 225
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 4/142 (2%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M+ M GL+APQ+G+PLRL ++ DP E +E + + P+ V +N
Sbjct: 49 LLRAMRETMHNAPGVGLAAPQIGVPLRLAVIE--DPAEVATEVREARGRVPQ-PYRVLVN 105
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + + + EGC S+ QA V R +++L G DETG+ GW ARI+QH
Sbjct: 106 PSYEPVG-DARAAFFEGCLSVPGWQAVVSRPERIRLRGQDETGRELDEEFTGWPARIVQH 164
Query: 124 EMDHLDGLLFTDSMLPKSLECV 145
E DHLDG+L+ D +SL
Sbjct: 165 ETDHLDGVLYLDLAETRSLSSA 186
>gi|116783457|gb|ABK22950.1| unknown [Picea sitchensis]
Length = 305
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMV 60
II M VM GL+APQ+G+PL+ I+ D EE + + + E F ++
Sbjct: 147 IIDDMIAVMWNAPGCGLAAPQLGVPLQ--IIVLEDKEEYIRFTLKEETEAQERHPFDLLI 204
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP++K K EGC S+ + V R+ +V++TG G P A GW ARI
Sbjct: 205 IINPKLKSKGIK-TAKFFEGCLSVNGFRGLVERHLEVEVTGFGRDGLPIKINATGWKARI 263
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECV 145
+QHE DHL GLL+ D ++P++ V
Sbjct: 264 LQHECDHLAGLLYVDKLIPRTFRTV 288
>gi|162455696|ref|YP_001618063.1| polypeptide deformylase [Sorangium cellulosum So ce56]
gi|161166278|emb|CAN97583.1| polypeptide deformylase [Sorangium cellulosum So ce56]
Length = 203
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 12/151 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE---GDIKKFEMQAFP 57
+K ++ M +VM++ GL+APQ+G+ + ++ D EE S G + F
Sbjct: 31 LKHLVSTMVSVMRKAPGVGLAAPQIGVDQQ--VIVLEDSEELMSRLTPGQRAERGRVPFR 88
Query: 58 HMVWINPEMKILDYK-------DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDS 110
V INP +++L + T EGC S+ A V R V+++G+DE GK
Sbjct: 89 LRVIINPTLRVLAPSLPDAAGAGRATFFEGCLSVPGYMALVERDLSVEVSGVDEDGKEVR 148
Query: 111 WTAEGWAARIIQHEMDHLDGLLFTDSMLPKS 141
W A GW ARI+QHE+DHL G L+ D M+ +S
Sbjct: 149 WEATGWPARILQHEVDHLRGTLYVDRMVTRS 179
>gi|124023604|ref|YP_001017911.1| peptide deformylase [Prochlorococcus marinus str. MIT 9303]
gi|123963890|gb|ABM78646.1| Formylmethionine deformylase [Prochlorococcus marinus str. MIT
9303]
Length = 181
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 8/135 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I +++ +K GL+APQ+G+PLR+ + P + E + P + IN
Sbjct: 32 LIKDLQDTVKAHQGAGLAAPQIGIPLRVVLFGGGGPNPRYPEA-------PSIPQTLLIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + +D D EGC S+ L+ KV R+ ++ L+E G EG+ AR+IQH
Sbjct: 85 PVLTPID-SDLEDGWEGCLSVPGLRGKVSRWSRIHYRALNEDGLEIEHCLEGFPARVIQH 143
Query: 124 EMDHLDGLLFTDSML 138
E DHLDG+LFTD ++
Sbjct: 144 ECDHLDGVLFTDRLV 158
>gi|94266527|ref|ZP_01290215.1| Peptide deformylase [delta proteobacterium MLMS-1]
gi|93452856|gb|EAT03376.1| Peptide deformylase [delta proteobacterium MLMS-1]
Length = 259
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 82/142 (57%), Gaps = 7/142 (4%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAF---- 56
++ ++ M M GL+APQVG+PL++ ++ ++G+ ++ A
Sbjct: 99 LRALVADMIATMHDAPGVGLAAPQVGVPLQVVVILGRVARPELADGEDEQQPPAAVAEER 158
Query: 57 -PHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEG 115
P +V INP ++++ + + EGC S++ +KV RY +V++T LD G+P AEG
Sbjct: 159 NPSLVLINP--RLVEGQGEEVDEEGCLSVRDYSSKVKRYARVRVTALDLDGQPLEIEAEG 216
Query: 116 WAARIIQHEMDHLDGLLFTDSM 137
+ AR++QHE+DHL+G LF D +
Sbjct: 217 FFARVLQHEIDHLEGTLFIDRL 238
>gi|257095171|ref|YP_003168812.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
gi|257047695|gb|ACV36883.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
Length = 177
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M+ M+ D GL+APQ+G+ LRL I + + + E + P V
Sbjct: 28 LHALIADMEETMRHLDGAGLAAPQIGVGLRLVIFGV--------DRNPRYPEAEPVPRTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L + A EGC S+ L+ VPR+ +++ TG D G+P + G+ AR+
Sbjct: 80 LINPVLFPLSSATE-EAWEGCLSVPGLRGWVPRWSRLRYTGFDARGRPIDRSVAGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHLDG+L+
Sbjct: 139 VQHECDHLDGILY 151
>gi|429739265|ref|ZP_19273025.1| peptide deformylase [Prevotella saccharolytica F0055]
gi|429157230|gb|EKX99831.1| peptide deformylase [Prevotella saccharolytica F0055]
Length = 187
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 79/142 (55%), Gaps = 13/142 (9%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAF--PH 58
+K +I M M D GL+APQ+GL +RL ++ ESF E K F +AF PH
Sbjct: 27 LKELIQNMFETMDASDGIGLAAPQIGLDIRLSVIDLDVLSESFPE--YKDFR-KAFINPH 83
Query: 59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDET-GKPDSWTAEGWA 117
+V I+ K K T EGC SL + VPR+ ++++ +DE + D W EG+
Sbjct: 84 IVEIDESSK------KETIEEGCLSLPGIHESVPRHTRIRVQYIDEDLQQHDEWV-EGYL 136
Query: 118 ARIIQHEMDHLDGLLFTDSMLP 139
AR++QHE DHLDG LF D + P
Sbjct: 137 ARVMQHEFDHLDGKLFIDRISP 158
>gi|148259391|ref|YP_001233518.1| peptide deformylase [Acidiphilium cryptum JF-5]
gi|146401072|gb|ABQ29599.1| peptide deformylase [Acidiphilium cryptum JF-5]
Length = 209
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M + GL+APQV +PLRLFI P+ E D + + A IN
Sbjct: 57 LLHDMAETLADAGGVGLAAPQVHVPLRLFIYRVPESRAGGGEHDGPR-GLSAV-----IN 110
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE+ +L + V EGC S+ + A VPR ++ L +D TG P S A G+ AR+IQH
Sbjct: 111 PEL-VLHPGEPVEDWEGCLSIPGMSALVPRAARLTLRAIDATGAPFSREAAGFHARVIQH 169
Query: 124 EMDHLDGLLFTDSM 137
E DHLDG+L+ +
Sbjct: 170 EADHLDGILYPQRL 183
>gi|449484177|ref|XP_004156807.1| PREDICTED: peptide deformylase 1A, chloroplastic-like isoform 2
[Cucumis sativus]
Length = 237
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 74/158 (46%), Gaps = 34/158 (21%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
II M M++ GL+APQ+G+PLR V IN
Sbjct: 109 IIDDMILTMRKAPGVGLAAPQIGIPLR-----------------------------VIIN 139
Query: 64 PEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
P++K K TAL EGC S+ +A V RY V++ G D G P A GW ARI+
Sbjct: 140 PKLK---SKSNKTALFFEGCLSVDGFRAVVERYLDVEVAGFDRDGNPIKVDASGWQARIL 196
Query: 122 QHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLEL 159
QHE DHLDG L+ D M+P++ + L G +L
Sbjct: 197 QHECDHLDGTLYVDKMVPRTFRTTENLTLPLAEGCPKL 234
>gi|443622086|ref|ZP_21106629.1| putative Peptide deformylase 3 [Streptomyces viridochromogenes
Tue57]
gi|443344442|gb|ELS58541.1| putative Peptide deformylase 3 [Streptomyces viridochromogenes
Tue57]
Length = 228
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 10/129 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
GL+APQVG+PLR+ ++ P P E + G + + P V +NP + + +
Sbjct: 82 GLAAPQVGVPLRVAVIEDPAPVPQEVRLARGRVPQ------PFRVLVNPSYEPVG-AGRA 134
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+ QA V R +V+LTG DE G+ GW ARI+QHE DHLDG+L+ D
Sbjct: 135 AFFEGCLSVPGYQAVVARPAEVRLTGADEHGRAVDEVFTGWPARIVQHETDHLDGVLYLD 194
Query: 136 SMLPKSLEC 144
+SL
Sbjct: 195 RAELRSLSS 203
>gi|395771688|ref|ZP_10452203.1| peptide deformylase [Streptomyces acidiscabies 84-104]
Length = 212
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 76/143 (53%), Gaps = 10/143 (6%)
Query: 5 ILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPD--PEESFSEGDIKKFEMQAF-PHMVW 61
I ++ M GL+APQVG+PLR+ ++ P PEE IK +A P V
Sbjct: 52 IEALRVTMHAAPGVGLAAPQVGVPLRIAVIEDPATVPEE------IKAARSRAPQPFRVL 105
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP + + + EGC S+ QA V R+ +V+L G DETG+ GWAARI+
Sbjct: 106 INPSYEGVG-PGRAAFYEGCLSVPGYQAVVARHAEVRLKGEDETGRILDEVFSGWAARIV 164
Query: 122 QHEMDHLDGLLFTDSMLPKSLEC 144
QHE DHLDG L+ D +SL
Sbjct: 165 QHETDHLDGGLYLDRAELRSLAA 187
>gi|408527389|emb|CCK25563.1| Peptide deformylase 3 [Streptomyces davawensis JCM 4913]
Length = 215
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 5 ILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMVW 61
I ++ M GL+APQVG+PLR+ ++ P P E + G + + P V
Sbjct: 54 IEALRLTMHTAPGVGLAAPQVGVPLRIAVIEDPAPVTEEVRLARGRVPQ------PFRVL 107
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
+NP + L + EGC S+ QA V R +V+LTG DE G+ GW ARI+
Sbjct: 108 VNPSYEPLGTA-RAAFFEGCLSVPGWQAVVARPVEVRLTGEDENGRTVDEEFSGWPARIV 166
Query: 122 QHEMDHLDGLLFTDSMLPKSLEC 144
QHE DHLDG+L+ D +SL
Sbjct: 167 QHETDHLDGMLYLDRAELRSLSS 189
>gi|397666290|ref|YP_006507827.1| putative Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2)
[Legionella pneumophila subsp. pneumophila]
gi|395129701|emb|CCD07934.1| putative Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2)
[Legionella pneumophila subsp. pneumophila]
Length = 200
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVW 61
K +I MK + GL+APQV ++ V P+ E + + + +P +
Sbjct: 33 KDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPE------EAQLLRDNAKIYPMHIL 86
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP + L ++ EGC S+ S KVPRY ++QL DE G G+ AR++
Sbjct: 87 INPNYEPLPQARIISDFEGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQIENGFYARVL 146
Query: 122 QHEMDHLDGLLFTDSMLPKSLECV 145
QHE+DHL+G+L TD + P +CV
Sbjct: 147 QHEIDHLNGVLITDRLTP---DCV 167
>gi|338980132|ref|ZP_08631441.1| Peptide deformylase [Acidiphilium sp. PM]
gi|338208966|gb|EGO96776.1| Peptide deformylase [Acidiphilium sp. PM]
Length = 187
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M + GL+APQV +PLRLFI P+ E D + + A IN
Sbjct: 35 LLHDMAETLADAGGVGLAAPQVHVPLRLFIYRVPESRAGGGEHDGPR-GLSAV-----IN 88
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE+ +L + V EGC S+ + A VPR ++ L +D TG P S A G+ AR+IQH
Sbjct: 89 PEL-VLHPGEPVEDWEGCLSIPGMSALVPRAARLTLRAMDATGAPFSREAAGFHARVIQH 147
Query: 124 EMDHLDGLLFTDSM 137
E DHLDG+L+ +
Sbjct: 148 EADHLDGILYPQRL 161
>gi|94264678|ref|ZP_01288460.1| Peptide deformylase [delta proteobacterium MLMS-1]
gi|93454909|gb|EAT05153.1| Peptide deformylase [delta proteobacterium MLMS-1]
Length = 263
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 82/142 (57%), Gaps = 7/142 (4%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAF---- 56
++ ++ M M GL+APQVG+PL++ ++ ++G+ ++ A
Sbjct: 99 LRELVADMIATMHDAPGVGLAAPQVGVPLQVVVILGRVARPELADGEDEQQPPAAVAEER 158
Query: 57 -PHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEG 115
P +V INP ++++ + + EGC S++ +KV RY +V++T LD G+P AEG
Sbjct: 159 NPSLVLINP--RLVEGQGEEVDEEGCLSVRDYSSKVKRYARVRVTALDLDGQPLEIEAEG 216
Query: 116 WAARIIQHEMDHLDGLLFTDSM 137
+ AR++QHE+DHL+G LF D +
Sbjct: 217 FFARVLQHEIDHLEGTLFIDRL 238
>gi|443477595|ref|ZP_21067430.1| peptide deformylase [Pseudanabaena biceps PCC 7429]
gi|443017242|gb|ELS31726.1| peptide deformylase [Pseudanabaena biceps PCC 7429]
Length = 188
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 14/133 (10%)
Query: 5 ILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINP 64
I++M M D GL+APQVG+ +L ++ +ES P +V INP
Sbjct: 46 IVEMLQTMYSNDGIGLAAPQVGINKQLLVIDIELKDESK-------------PALVMINP 92
Query: 65 EMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHE 124
E+K D +T EGC S+ + V R +V+++ DE G+P AEG AR+IQHE
Sbjct: 93 EIK-SSGGDLITGEEGCLSIPEVFLDVVRPDRVEVSYRDEDGRPQHMIAEGLLARVIQHE 151
Query: 125 MDHLDGLLFTDSM 137
MDHL+G+LF D +
Sbjct: 152 MDHLNGVLFVDRV 164
>gi|326402613|ref|YP_004282694.1| peptide deformylase [Acidiphilium multivorum AIU301]
gi|325049474|dbj|BAJ79812.1| peptide deformylase [Acidiphilium multivorum AIU301]
Length = 184
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 68/119 (57%), Gaps = 7/119 (5%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQV +PLRLFI P+ E D + + A INPE+ +L + V
Sbjct: 47 GLAAPQVHVPLRLFIYRVPESRAGGGEHDGPR-GLSAV-----INPEL-VLHPGEPVEDW 99
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + A VPR ++ L +D TG P S A G+ AR+IQHE DHLDG+L+ +
Sbjct: 100 EGCLSIPGMSALVPRAARLTLRAMDATGAPFSREAAGFHARVIQHEADHLDGILYPQRL 158
>gi|94268712|ref|ZP_01291263.1| Peptide deformylase [delta proteobacterium MLMS-1]
gi|93451495|gb|EAT02324.1| Peptide deformylase [delta proteobacterium MLMS-1]
Length = 259
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 82/142 (57%), Gaps = 7/142 (4%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAF---- 56
++ ++ M M GL+APQVG+PL++ ++ ++G+ ++ A
Sbjct: 99 LRELVADMIATMHDAPGVGLAAPQVGVPLQVVVILGRVARPELADGEDEQQPPAAVAEER 158
Query: 57 -PHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEG 115
P +V INP ++++ + + EGC S++ +KV RY +V++T LD G+P AEG
Sbjct: 159 NPSLVLINP--RLVEGQGEEVDEEGCLSVRDYSSKVKRYTRVRVTALDLDGQPLEIEAEG 216
Query: 116 WAARIIQHEMDHLDGLLFTDSM 137
+ AR++QHE+DHL+G LF D +
Sbjct: 217 FFARVLQHEIDHLEGTLFIDRL 238
>gi|409402673|ref|ZP_11252179.1| polypeptide deformylase [Acidocella sp. MX-AZ02]
gi|409128790|gb|EKM98674.1| polypeptide deformylase [Acidocella sp. MX-AZ02]
Length = 175
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 72/137 (52%), Gaps = 10/137 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQV + LRLF+ P + E P
Sbjct: 29 IQALIAAMAETMFDAGGVGLAAPQVHVGLRLFVFRVPP----------GRGEGAEIPLRA 78
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + + + EGC S+ L+A VPR+R+++L+GLDE GK G+AAR+
Sbjct: 79 VVNPVITPNEAAGRELGWEGCLSIPGLRAAVPRWREIRLSGLDEDGKVFDEVLTGFAARV 138
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHE DHLDG+L+ M
Sbjct: 139 VQHEADHLDGVLYPMRM 155
>gi|52840852|ref|YP_094651.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|52627963|gb|AAU26704.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
Length = 237
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVW 61
K +I MK + GL+APQV ++ V P+ E + + + +P +
Sbjct: 70 KDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPE------EAQLLRDNAKIYPMHIL 123
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP + L ++ EGC S+ S KVPRY ++QL DE G G+ AR++
Sbjct: 124 INPNYEPLPQARIISDFEGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQIENGFYARVL 183
Query: 122 QHEMDHLDGLLFTDSMLPKSLECV 145
QHE+DHL+G+L TD + P +CV
Sbjct: 184 QHEIDHLNGVLITDRLTP---DCV 204
>gi|224023749|ref|ZP_03642115.1| hypothetical protein BACCOPRO_00465 [Bacteroides coprophilus DSM
18228]
gi|224016971|gb|EEF74983.1| hypothetical protein BACCOPRO_00465 [Bacteroides coprophilus DSM
18228]
Length = 184
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 84/159 (52%), Gaps = 17/159 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHM- 59
+K +I M M R D GL+APQVGLP+R+ +V D+ +M F
Sbjct: 27 LKELIQNMFETMDRADGVGLAAPQVGLPIRVVVVNL----------DVLSDDMPEFKDFK 76
Query: 60 -VWINPEMKILDYKDKVTALE-GCASLKSLQAKVPRYRKVQLTGLDET-GKPDSWTAEGW 116
V+INP IL+ D++ ++E GC SL + V R ++ +T LDE D W EG+
Sbjct: 77 RVYINPH--ILETGDEMVSMEEGCLSLPGIHESVKRPDRIHVTYLDENMTAHDEW-VEGY 133
Query: 117 AARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
AR++QHE DHLDG +F D + + + + N+ NG
Sbjct: 134 LARVMQHEFDHLDGTMFIDHLSSLRKQMIRGKLNNMVNG 172
>gi|302555792|ref|ZP_07308134.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
gi|302473410|gb|EFL36503.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
Length = 214
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMVWINP 64
++ M+ GL+APQVG+PLR+ ++ P P E + G + P V +NP
Sbjct: 57 LRVTMRAAPGVGLAAPQVGVPLRIAVIEDPAPVPEEVRLARGRVP------LPFRVLVNP 110
Query: 65 EMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHE 124
+ + EGC S+ QA V R +V+LTG DE G+ GW ARI+QHE
Sbjct: 111 AYAPVG-GARAAFFEGCLSVPGWQAVVARPAEVRLTGQDEHGRALDEVFTGWPARIVQHE 169
Query: 125 MDHLDGLLFTDSMLPKSLEC 144
DHLDG+L+ D +SL
Sbjct: 170 TDHLDGVLYLDRAESRSLSS 189
>gi|54296635|ref|YP_123004.1| hypothetical protein lpp0666 [Legionella pneumophila str. Paris]
gi|53750420|emb|CAH11814.1| hypothetical protein lpp0666 [Legionella pneumophila str. Paris]
Length = 229
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I MK + GL+APQV ++ V P+ E + + + +P + IN
Sbjct: 64 LIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPE------EAQLLRDNAKIYPMHILIN 117
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L ++ EGC S+ S KVPRY ++QL DE G G+ AR++QH
Sbjct: 118 PNYEPLPQARIISDFEGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQIENGFYARVLQH 177
Query: 124 EMDHLDGLLFTDSMLPKSLECV 145
E+DHL+G+L TD + P +CV
Sbjct: 178 EIDHLNGVLITDRLTP---DCV 196
>gi|313203124|ref|YP_004041781.1| peptide deformylase [Paludibacter propionicigenes WB4]
gi|312442440|gb|ADQ78796.1| peptide deformylase [Paludibacter propionicigenes WB4]
Length = 183
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 9/155 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M M + GL+APQVGLP+RL ++ F E D E+ AF +
Sbjct: 27 LNTLIDNMFQTMYHAEGVGLAAPQVGLPIRLLVIDL----APFKEDDP---ELGAF-KIT 78
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE+ + +++V+ EGC S+ + V R + +++T LD K + EG+ AR+
Sbjct: 79 MINPEI-LERSEEEVSGDEGCLSIPGIHETVSRAQSIKITYLDPDFKEHTDVFEGYKARV 137
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
+QHE DHL+G LFTD + P + + + N+ G
Sbjct: 138 VQHEYDHLEGHLFTDHVTPIRRQLLKSKLTNIVKG 172
>gi|340622589|ref|YP_004741041.1| polypeptide deformylase [Capnocytophaga canimorsus Cc5]
gi|339902855|gb|AEK23934.1| Polypeptide deformylase [Capnocytophaga canimorsus Cc5]
Length = 196
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 6/165 (3%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHM- 59
+K +I M M+ GL+APQ+GLP+RLF++ D E + D+ + E +
Sbjct: 27 LKTLIDNMFQTMEASHGVGLAAPQIGLPIRLFVI---DAEPFSDDEDLSEEERTLLKNFR 83
Query: 60 -VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
V+IN ++ + + +K + EGC S+ ++ V R+ + + LDE +P T G AA
Sbjct: 84 KVFINAKI-VEETGEKWSFNEGCLSIPGVREDVSRHETLTIEFLDEHFQPQRLTVGGLAA 142
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
R+IQHE DH+ G+LFTD + + + + N+ G + + Y M
Sbjct: 143 RVIQHEYDHIQGILFTDKLSAFKKQLLKGKLANISKGKVNVDYRM 187
>gi|332669559|ref|YP_004452567.1| peptide deformylase [Cellulomonas fimi ATCC 484]
gi|332338597|gb|AEE45180.1| Peptide deformylase [Cellulomonas fimi ATCC 484]
Length = 321
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 6/146 (4%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQA-FPHM 59
++ ++ M+ M GL+APQ+GLP+ + ++ P +GD+ + +A
Sbjct: 57 LESLVHVMRATMHAAPGVGLAAPQIGLPVAVAVLEDSGP----PDGDVAQVRERAPLEFR 112
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V +NP +D ++ EGC S+ QA V R R+V L G DE G+P GW AR
Sbjct: 113 VLVNPRYAAVD-DERRAFYEGCLSVVGYQAVVARPRRVHLVGADERGRPLDEVLTGWPAR 171
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECV 145
I+QHE DHL G+L+ D +SL
Sbjct: 172 IVQHETDHLGGVLYLDRAELRSLAAA 197
>gi|340776758|ref|ZP_08696701.1| peptide deformylase [Acetobacter aceti NBRC 14818]
Length = 184
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 76/133 (57%), Gaps = 8/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M+ GL+APQV + R+F+ P EG+ +Q V
Sbjct: 29 VQTLIDDMIETMRDAGGVGLAAPQVHVSKRIFVYYVP--PTRLEEGEQSPDGIQ-----V 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP ++ LD + ++ +EGC S+ L+ VPRY +V+ G+D TG P S A+G+ A +
Sbjct: 82 LVNPVIEPLDEEVRLR-MEGCLSIPGLRGWVPRYARVRYQGIDRTGAPVSGIAQGFHANV 140
Query: 121 IQHEMDHLDGLLF 133
IQHE DHLDG+L+
Sbjct: 141 IQHETDHLDGVLY 153
>gi|421852924|ref|ZP_16285607.1| peptide deformylase [Acetobacter pasteurianus subsp. pasteurianus
LMG 1262 = NBRC 106471]
gi|371478923|dbj|GAB30810.1| peptide deformylase [Acetobacter pasteurianus subsp. pasteurianus
LMG 1262 = NBRC 106471]
Length = 174
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 77/130 (59%), Gaps = 8/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M+ +++ GL+APQV + RLF+ + P + SEG+ + + P IN
Sbjct: 32 LIADMRETLEKSGGVGLAAPQVFVSQRLFLYSVP---LARSEGE----DDPSLPVQALIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P +K +D +K+ EGC SL L+ +VPRY+++ G D+ G+ A G+ A ++QH
Sbjct: 85 PVLKPVD-DEKLLRTEGCLSLPDLRGEVPRYKRIWYAGFDQHGQKVEGMATGFRAHVMQH 143
Query: 124 EMDHLDGLLF 133
EMDHLDG+L+
Sbjct: 144 EMDHLDGILY 153
>gi|336171357|ref|YP_004578495.1| peptide deformylase [Lacinutrix sp. 5H-3-7-4]
gi|334725929|gb|AEH00067.1| Peptide deformylase [Lacinutrix sp. 5H-3-7-4]
Length = 196
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHM 59
+K +I M+ M GL+APQ+GLP+R+F+V A P ++ E D + F ++ F H
Sbjct: 27 LKELITNMQETMHGAYGVGLAAPQIGLPIRMFLVDASPFADDDVLEDDERAF-LKNFKH- 84
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+INP + + + D+ EGC S+ ++ V R +++ DE K + G AAR
Sbjct: 85 TFINPTI-LEESGDEWAFNEGCLSIPDVREDVFRKPNIKVEYFDEDFKKHTMELSGLAAR 143
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
+ QHE DH++G+LFTD + + + +N+ G + + Y M
Sbjct: 144 VFQHEYDHIEGILFTDKLSSLKKRLIKGKLLNISKGKINVEYRM 187
>gi|320162554|ref|YP_004175779.1| peptide deformylase [Anaerolinea thermophila UNI-1]
gi|319996408|dbj|BAJ65179.1| peptide deformylase [Anaerolinea thermophila UNI-1]
Length = 171
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 13/149 (8%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++++I M M+ GL+APQVG+ R+ +V + + EE KK P +V
Sbjct: 28 LQVLIDDMIETMRAAPGVGLAAPQVGVSQRVIVVEYGEGEEEDENVP-KKLYAVVNPEIV 86
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+PE +VT +EGC S+ + +V R+ ++ + GL+ GKP + GW ARI
Sbjct: 87 EASPE--------RVTGVEGCLSIPRMMGEVERHERIVVKGLNRYGKPVKYKLSGWTARI 138
Query: 121 IQHEMDHLDGLLFTDSM----LPKSLECV 145
QHE+DHL+G+L+TD +PK E V
Sbjct: 139 FQHEIDHLEGILYTDRATSVWIPKEEEEV 167
>gi|189461816|ref|ZP_03010601.1| hypothetical protein BACCOP_02482 [Bacteroides coprocola DSM 17136]
gi|189431410|gb|EDV00395.1| peptide deformylase [Bacteroides coprocola DSM 17136]
Length = 184
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 74/138 (53%), Gaps = 11/138 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M R D GL+APQVGLP+R+ ++ E E K F
Sbjct: 27 LKELIQNMFETMDRADGVGLAAPQVGLPIRVVVINLDVLSEDMPE--FKDFRR------A 78
Query: 61 WINPEMKILDYKDKVTALE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+INP IL+ +++ ++E GC SL + V R K+ +T LDE P EG+ AR
Sbjct: 79 YINPH--ILETGEELVSMEEGCLSLPGIHEAVKRPDKIHVTYLDEDMNPHDEWVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSM 137
++QHE DHLDG +F D +
Sbjct: 137 VMQHEFDHLDGTMFIDHL 154
>gi|325298805|ref|YP_004258722.1| Peptide deformylase [Bacteroides salanitronis DSM 18170]
gi|324318358|gb|ADY36249.1| Peptide deformylase [Bacteroides salanitronis DSM 18170]
Length = 184
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 74/138 (53%), Gaps = 11/138 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M R D GL+APQVGLP+R+ +V E F E K F
Sbjct: 27 LKELIQNMFETMDRADGVGLAAPQVGLPIRVVVVNLDVLAEDFPE--YKDFRR------A 78
Query: 61 WINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+INP IL+ ++ ++ EGC SL + V R K+ +T LDE P EG+ AR
Sbjct: 79 YINPH--ILETGGELVSMDEGCLSLPGIHESVKRPDKIHVTYLDEDMNPHDEWVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSM 137
++QHE DHL+G +F D +
Sbjct: 137 VMQHEFDHLEGTMFIDHL 154
>gi|198275233|ref|ZP_03207764.1| hypothetical protein BACPLE_01392 [Bacteroides plebeius DSM 17135]
gi|198271816|gb|EDY96086.1| peptide deformylase [Bacteroides plebeius DSM 17135]
Length = 184
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 15/140 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHM- 59
+K +I M M R D GL+APQ+GLP+R+ +V D+ +M F
Sbjct: 27 LKELITNMFETMDRADGVGLAAPQIGLPIRVVVVNL----------DVLSDDMPEFKDFK 76
Query: 60 -VWINPEMKILDYKDKVTALE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWA 117
+INP IL+ ++ ++E GC SL + V R K+ +T LDE +P EG+
Sbjct: 77 RTYINPH--ILETGGELVSMEEGCLSLPGIHESVKRPDKIHVTYLDENMQPHDEWVEGYL 134
Query: 118 ARIIQHEMDHLDGLLFTDSM 137
AR++QHE DHLDG +F D +
Sbjct: 135 ARVMQHEFDHLDGTMFIDHL 154
>gi|386843997|ref|YP_006249055.1| peptide deformylase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374104298|gb|AEY93182.1| peptide deformylase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451797290|gb|AGF67339.1| peptide deformylase [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 214
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 10/141 (7%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPD--PEE-SFSEGDIKKFEMQAFPHMVWINP 64
++ M GL+APQVG+PLR+ ++ P PEE + + G + + P V +NP
Sbjct: 57 LRVTMHAAPGVGLAAPQVGVPLRIAVIEDPAQVPEEVAVARGRVPQ------PFRVLVNP 110
Query: 65 EMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHE 124
+ + + EGC S+ A V R+ +V+L G DE G+ GW ARI+QHE
Sbjct: 111 SYEPVGTA-RAAFFEGCLSVPGWVAVVARHAEVRLRGADEHGRALDEVFTGWPARIVQHE 169
Query: 125 MDHLDGLLFTDSMLPKSLECV 145
DHLDG L+ D P+SL
Sbjct: 170 TDHLDGTLYLDRAEPRSLSTT 190
>gi|383648814|ref|ZP_09959220.1| peptide deformylase [Streptomyces chartreusis NRRL 12338]
Length = 214
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 73/140 (52%), Gaps = 10/140 (7%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMVWINP 64
++ M+ GL+APQVG+PLR+ ++ P P E + G + + P V +NP
Sbjct: 57 LRITMRAAPGVGLAAPQVGVPLRVAVIEDPAPVPEEVRLARGRVPQ------PFRVLVNP 110
Query: 65 EMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHE 124
+ + + EGC S+ QA V R +V+LTG DE G GW ARI+QHE
Sbjct: 111 AYEPVGGA-RAAFFEGCLSVPGWQAVVARPAEVRLTGQDEHGHALDEVFTGWPARIVQHE 169
Query: 125 MDHLDGLLFTDSMLPKSLEC 144
DHLDG+L+ D +SL
Sbjct: 170 TDHLDGVLYLDRAESRSLSS 189
>gi|86610195|ref|YP_478957.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558737|gb|ABD03694.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 196
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 18/132 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
M M FD GL+APQVG+P R+ +V +PD E P +V INPE+
Sbjct: 50 MLQTMYSFDGIGLAAPQVGIPKRMIVVDLYPDKPE--------------VPPLVLINPEI 95
Query: 67 KILDY-KDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEM 125
+ +Y + V EGC S+ + +V R + ++ DETG+P + A+ AR+IQHE+
Sbjct: 96 R--EYIGEAVAGQEGCLSIPGVFCEVMRPEGIVVSFKDETGRPRTLRADDLLARVIQHEI 153
Query: 126 DHLDGLLFTDSM 137
DHL+G+LF D +
Sbjct: 154 DHLNGVLFVDHV 165
>gi|39930960|sp|Q7NJV3.1|DEF1_GLOVI RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
Length = 227
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVA-FPDPEESFSEGDIKKFEMQAFPHMVWI 62
+I M M+ GL+APQVG+ ++L ++ P+ E S + ++ E + P V I
Sbjct: 76 LIAAMAERMREAPGVGLAAPQVGVSVQLVVIEDRPEYIERLSGAERREREREPVPFHVLI 135
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP + + + ++ EGC S+ Q V R R V++ LDE P A GW ARI+Q
Sbjct: 136 NPVLSV-EGEESAVFFEGCLSIPGYQGLVARARVVRVEALDERAAPVVIRAHGWYARILQ 194
Query: 123 HEMDHLDGLLFTDSM 137
HE+DHL+GLL D M
Sbjct: 195 HEIDHLNGLLCVDRM 209
>gi|291435575|ref|ZP_06574965.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
gi|291338470|gb|EFE65426.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
Length = 214
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 73/140 (52%), Gaps = 10/140 (7%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMVWINP 64
++ M GL+APQVG+ LR+ ++ P P E + G + + P +NP
Sbjct: 57 LRITMHAAPGVGLAAPQVGVALRIAVIEDPAPVPEEVRRARGRVPQ------PFRALVNP 110
Query: 65 EMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHE 124
+ + + EGC S+ QA V R +V+LTG DE G+ GW ARI+QHE
Sbjct: 111 SYEPVG-AGRAAFFEGCLSVPGYQAVVARPAEVRLTGQDEHGRALDEVFTGWPARIVQHE 169
Query: 125 MDHLDGLLFTDSMLPKSLEC 144
+DHLDG+L+ D P+SL
Sbjct: 170 IDHLDGVLYLDRAEPRSLSS 189
>gi|296135817|ref|YP_003643059.1| peptide deformylase [Thiomonas intermedia K12]
gi|295795939|gb|ADG30729.1| peptide deformylase [Thiomonas intermedia K12]
Length = 177
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 75/151 (49%), Gaps = 21/151 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I + M+ GL+APQ+G+ L + I F + E A P V
Sbjct: 29 LHALIADLFETMQAAGGVGLAAPQIGVDLAVVIFGFSQ--------SARYPEAPAVPQTV 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE+ +LD ++ EGC S+ L+ VPR+R+++ G+D G P AEG+ AR+
Sbjct: 81 LINPEISVLDDAEE-EGWEGCLSVPGLRGWVPRFRRIRYRGMDAYGNPIDREAEGFHARV 139
Query: 121 IQHEMDHLDGLL------------FTDSMLP 139
+QHE DHL G L FTD + P
Sbjct: 140 VQHECDHLIGKLYPMRIRDFSRFGFTDELFP 170
>gi|425735814|ref|ZP_18854125.1| peptide deformylase [Brevibacterium casei S18]
gi|425479048|gb|EKU46228.1| peptide deformylase [Brevibacterium casei S18]
Length = 190
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 77/141 (54%), Gaps = 17/141 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M + + GL+APQ+G+ R+F+ D + +++ H V
Sbjct: 28 LRTLVADMHETLDASNGVGLAAPQIGVGKRIFVYHADD------DTGVRR-------HGV 74
Query: 61 WINPEM---KILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
++NP + +I D + D EGC S+ SL + R +V + G+DETG P S +AEGW
Sbjct: 75 FVNPVLVSSRIPDTRPDPAEETEGCLSVPSLDFPLKRAERVTINGVDETGAPVSLSAEGW 134
Query: 117 AARIIQHEMDHLDGLLFTDSM 137
ARI+QHE DHL G L+ D +
Sbjct: 135 FARIMQHEYDHLQGTLYVDRL 155
>gi|302523131|ref|ZP_07275473.1| polypeptide deformylase [Streptomyces sp. SPB78]
gi|302432026|gb|EFL03842.1| polypeptide deformylase [Streptomyces sp. SPB78]
Length = 214
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 9/159 (5%)
Query: 11 VMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILD 70
M+ GL+APQ+G+PLRL ++ P + E + E + P+ V +NP + +
Sbjct: 60 TMREAPGVGLAAPQIGVPLRLAVLEDP---ATVPEEVRRVREREPLPYRVLVNPVYEGVG 116
Query: 71 YKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDG 130
+ + EGC S+ QA V R+ V+L DE G GW ARI+QHE DHLDG
Sbjct: 117 ER-RAAFYEGCLSVPGWQAVVARHAVVRLRAEDEHGTALDEEVRGWPARIVQHETDHLDG 175
Query: 131 LLFTDSMLPKSLEC-----VCWQDINLQNGLLELRYYMS 164
L+ D LP+SL W D + EL + ++
Sbjct: 176 TLYVDRALPRSLTSNENLLRYWNDPAPERAAAELGFALN 214
>gi|37521298|ref|NP_924675.1| peptide deformylase [Gloeobacter violaceus PCC 7421]
gi|35212295|dbj|BAC89670.1| polypeptide deformylase [Gloeobacter violaceus PCC 7421]
Length = 275
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVA-FPDPEESFSEGDIKKFEMQAFPHMVWI 62
+I M M+ GL+APQVG+ ++L ++ P+ E S + ++ E + P V I
Sbjct: 124 LIAAMAERMREAPGVGLAAPQVGVSVQLVVIEDRPEYIERLSGAERREREREPVPFHVLI 183
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP + + + ++ EGC S+ Q V R R V++ LDE P A GW ARI+Q
Sbjct: 184 NPVLSV-EGEESAVFFEGCLSIPGYQGLVARARVVRVEALDERAAPVVIRAHGWYARILQ 242
Query: 123 HEMDHLDGLLFTDSM 137
HE+DHL+GLL D M
Sbjct: 243 HEIDHLNGLLCVDRM 257
>gi|408490031|ref|YP_006866400.1| peptide deformylase [Psychroflexus torquis ATCC 700755]
gi|408467306|gb|AFU67650.1| peptide deformylase [Psychroflexus torquis ATCC 700755]
Length = 196
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQ+GL +RLFIV E S +++K E++AF V+INP++ I + +
Sbjct: 45 GLAAPQIGLSIRLFIVDAKPFSEDESLSELEKNELEAFKR-VFINPQI-IEENGIEWDFN 102
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
EGC S+ + + R ++ + LDE P G AAR++QHE DH++G+LFTD +
Sbjct: 103 EGCLSIPDVHEDIFRKPEITVEYLDENFTPQKEKLSGLAARVVQHEYDHIEGVLFTDRIS 162
Query: 139 PKSLECVCWQDINLQNGLLELRYYM 163
+ + N+ G +E+ Y M
Sbjct: 163 SLKKRLIKNKLTNISKGKIEVGYRM 187
>gi|365856725|ref|ZP_09396737.1| peptide deformylase [Acetobacteraceae bacterium AT-5844]
gi|363717670|gb|EHM01036.1| peptide deformylase [Acetobacteraceae bacterium AT-5844]
Length = 168
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 77/142 (54%), Gaps = 19/142 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I+ M M GL+APQV +PLRLF+ F +GD E+ A
Sbjct: 29 IRRLIMDMAETMLDAGGLGLAAPQVHVPLRLFV---------FRDGD----EVAAL---- 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE+++L + + EGC S+ L+ VPR +V GLD G+ S AEG AR+
Sbjct: 72 -INPEIELLGPAESL-GWEGCLSIPGLRGSVPRAARVGFRGLDVQGEEVSGEAEGMLARV 129
Query: 121 IQHEMDHLDGLLFTDSMLPKSL 142
+QHE DHLDG+L+ M SL
Sbjct: 130 MQHENDHLDGVLYPMRMTDFSL 151
>gi|410693558|ref|YP_003624179.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp.
3As]
gi|294339982|emb|CAZ88345.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp.
3As]
Length = 177
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I + M+ GL+APQ+G+ L + I F + E A P V
Sbjct: 29 LHALIADLFETMQAAGGVGLAAPQIGVDLAVVIFGFSQ--------SARYPEAPAVPQTV 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE+ +LD ++ EGC S+ L+ VPR+R+++ G+D G P AEG+ AR+
Sbjct: 81 LINPEISVLDDAEE-EGWEGCLSVPGLRGWVPRFRRIRYRGMDPYGNPIDREAEGFHARV 139
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 140 VQHECDHLIGKLY 152
>gi|429748597|ref|ZP_19281779.1| peptide deformylase [Capnocytophaga sp. oral taxon 332 str. F0381]
gi|429170484|gb|EKY12156.1| peptide deformylase [Capnocytophaga sp. oral taxon 332 str. F0381]
Length = 202
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 89/166 (53%), Gaps = 8/166 (4%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV---AFPDPEESFSEGDIKKFEMQAFP 57
+K +I M + M + GL+APQVGL +RLF+V F D E+ +E +KF + F
Sbjct: 33 LKSLIANMYDTMNNANGVGLAAPQVGLAIRLFVVDTAPFADDEDLTAEE--QKF-LLGFK 89
Query: 58 HMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWA 117
V+IN ++ + K EGC S+ ++ V R ++ + LDE P T G A
Sbjct: 90 K-VFINAKI-TEETGKKWLFNEGCLSIPGVREDVSRNEQITIEFLDENFNPQKLTLNGLA 147
Query: 118 ARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
AR++QHE DH++G+LFTD + + + + N+ G + + Y M
Sbjct: 148 ARVVQHEYDHIEGILFTDKISSLKKQLIKSKLANISKGKVNVDYRM 193
>gi|386836550|ref|YP_006241608.1| peptide deformylase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374096851|gb|AEY85735.1| peptide deformylase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451789908|gb|AGF59957.1| peptide deformylase [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 215
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 14/145 (9%)
Query: 5 ILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQA-----FPHM 59
+ ++ M GL+APQVG+PL + ++ E + G +K +QA P
Sbjct: 55 VAALRETMHAAPGVGLAAPQVGVPLNIAVI------EDKARG--RKEALQARDRAPLPFR 106
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V +NP + + + + EGC S+ QA RY +V+L G DE G+ GWAAR
Sbjct: 107 VLVNPVYEP-EGETRAAFFEGCLSVPGWQAVTARYARVRLRGQDERGQAVDEVFTGWAAR 165
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLEC 144
I+QHE DHL+G L+ D P+SL
Sbjct: 166 IVQHETDHLNGTLYLDVAEPRSLST 190
>gi|406834652|ref|ZP_11094246.1| peptide deformylase [Schlesneria paludicola DSM 18645]
Length = 199
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAF-PDPEESFSEGDIKKFEMQAFPHM 59
++ I+ +M ++M GL+A QVGLP RLF++ DPEE E +
Sbjct: 25 LRRIVAEMFSLMYTAKGIGLAANQVGLPYRLFVLNLTADPEEKDEE-------------I 71
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V+INPE IL K EGC S + V R KV + D G+ ++ + AAR
Sbjct: 72 VFINPE--ILKRKGTTEGEEGCLSFPGMYGPVKRAAKVVIEAFDLNGECIEYSLDDLAAR 129
Query: 120 IIQHEMDHLDGLLFTDSM 137
+QHE DHLDG+LFTD M
Sbjct: 130 AVQHETDHLDGILFTDRM 147
>gi|260905538|ref|ZP_05913860.1| peptide deformylase [Brevibacterium linens BL2]
Length = 221
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 15/164 (9%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFP---DPEESFSEGDIKKFEMQAFPHMVWINP 64
M+ M GL+ PQVG+ L +F+ P DPE + + + P V +N
Sbjct: 59 MRATMLAAPGVGLAGPQVGIGLSMFVAEDPGSLDPETA------EVRQRSPMPLRVVLNA 112
Query: 65 EMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHE 124
E + V EGC S+ QA V R R ++LTG+D G P + GW+ARI+ HE
Sbjct: 113 EYTPA-TSENVAFFEGCLSIPGYQAVVARPRSIELTGVDLNGTPIAEVVAGWSARIVAHE 171
Query: 125 MDHLDGLLFTDSMLPKSLECVC-----WQDINLQNGLLELRYYM 163
DHLDG+++ D +SL W + Q EL + +
Sbjct: 172 TDHLDGIMYLDKAEMRSLSTNTSVAKFWNQPSTQQAASELGFTL 215
>gi|115437554|ref|NP_001043323.1| Os01g0555800 [Oryza sativa Japonica Group]
gi|113532854|dbj|BAF05237.1| Os01g0555800, partial [Oryza sativa Japonica Group]
Length = 121
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 5/111 (4%)
Query: 47 DIKKFEMQAFPHMVWINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDE 104
DI+ + + F +V INP++K K TAL EGC S+ +A V R+ V+++GLD
Sbjct: 7 DIEAQDRRPFDLLVIINPKLKT---TSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDR 63
Query: 105 TGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
G+P A GW ARI+QHE DHL+G L+ D+M+P++ V D+ L G
Sbjct: 64 NGRPIKVEASGWQARILQHECDHLEGTLYVDTMVPRTFRIVDNLDLPLPVG 114
>gi|381179529|ref|ZP_09888380.1| peptide deformylase [Treponema saccharophilum DSM 2985]
gi|380768578|gb|EIC02566.1| peptide deformylase [Treponema saccharophilum DSM 2985]
Length = 193
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 72/139 (51%), Gaps = 18/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
M+ + M M + GL+APQVG+ R F+V S+ D+K+ + P +V
Sbjct: 29 MRALFEDMFETMIEANGVGLAAPQVGISKRFFVV--------MSDDDVKRVFIN--PQIV 78
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+ EM DY+ EGC SL + R KV + LDE GKP + AEG ARI
Sbjct: 79 STSAEM--CDYE------EGCLSLPGFNENIRRPAKVTVQALDEKGKPFTLEAEGLLARI 130
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE DHLDG+++ D P
Sbjct: 131 IQHENDHLDGIVYIDRGDP 149
>gi|453329549|dbj|GAC88393.1| polypeptide deformylase [Gluconobacter thailandicus NBRC 3255]
Length = 170
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 71/134 (52%), Gaps = 11/134 (8%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQV + LRLFI P S E QA V
Sbjct: 29 IRRLIKDMLETMADARGAGLAAPQVHVSLRLFIYHVPANRVSDPE--------QAMLPRV 80
Query: 61 WINPEMKILDYKDKVT-ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
INPE I+ D++ EGC S+ L+ VPRY KV+ GLDE G P A G+ A
Sbjct: 81 LINPE--IIPVGDEMMLCSEGCLSIPGLRGDVPRYAKVRYRGLDENGDPVEGEAVGFHAN 138
Query: 120 IIQHEMDHLDGLLF 133
++QHE DHLDG+L+
Sbjct: 139 VLQHENDHLDGVLY 152
>gi|429203855|ref|ZP_19195165.1| peptide deformylase [Streptomyces ipomoeae 91-03]
gi|428660605|gb|EKX60151.1| peptide deformylase [Streptomyces ipomoeae 91-03]
Length = 218
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 12/144 (8%)
Query: 5 ILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMVW 61
I ++ M GL+APQVG+ LR+ +V P P E + G + + P V
Sbjct: 57 IAALRATMHAAPGVGLAAPQVGVSLRIAVVEDPAPVPEEVRLARGRVPQ------PFRVL 110
Query: 62 INPEMKILD-YKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + + Y+D EGC S+ QA V R+ KV+L LDE G+ GW ARI
Sbjct: 111 VNPSYEAVGPYRDAF--FEGCLSVPGWQAVVARHAKVRLRALDEHGQAVDEEFSGWPARI 168
Query: 121 IQHEMDHLDGLLFTDSMLPKSLEC 144
+QHE DHL+G L+ D +SL
Sbjct: 169 VQHETDHLNGTLYLDRAELRSLSS 192
>gi|456386480|gb|EMF52016.1| polypeptide deformylase [Streptomyces bottropensis ATCC 25435]
Length = 218
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 74/144 (51%), Gaps = 12/144 (8%)
Query: 5 ILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMVW 61
+ ++ M GL+APQVG+ LRL ++ P P E + G + + P V
Sbjct: 57 VAALRATMHAAPGVGLAAPQVGVSLRLAVIEDPAPVPEEVRLARGRVPQ------PFRVL 110
Query: 62 INPEMKILD-YKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + + Y+D EGC S+ QA V R+ KV+L LDE G+ GW ARI
Sbjct: 111 VNPAYEAVGPYRDAF--FEGCLSVPGWQAVVARHAKVRLRALDERGRAVDEEFSGWPARI 168
Query: 121 IQHEMDHLDGLLFTDSMLPKSLEC 144
+QHE DHL+G L+ D +SL
Sbjct: 169 VQHETDHLNGTLYLDHAELRSLSS 192
>gi|421849493|ref|ZP_16282472.1| peptide deformylase [Acetobacter pasteurianus NBRC 101655]
gi|371459680|dbj|GAB27675.1| peptide deformylase [Acetobacter pasteurianus NBRC 101655]
Length = 174
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M+ ++ GL+APQV + RLFI + P + SEG+ + P IN
Sbjct: 32 LIADMRETLEESGGVGLAAPQVFVSQRLFIYSVP---LARSEGE----DDPPLPVQALIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P +K +D +K+ EGC SL L+ +VPRY+++ G D G+ A G+ A ++QH
Sbjct: 85 PVLKPVD-DEKLLRTEGCLSLPELRGEVPRYKRIWYAGFDPHGQKVEGMATGFRAHVMQH 143
Query: 124 EMDHLDGLLFTDSM 137
EMDHLDG+L+ M
Sbjct: 144 EMDHLDGILYPMRM 157
>gi|86604850|ref|YP_473613.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
gi|86553392|gb|ABC98350.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
Length = 198
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 75/133 (56%), Gaps = 18/133 (13%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHMVWINPE 65
M M D GL+APQVG+P RL +V +PD E P +V INPE
Sbjct: 47 HMLQTMYSADGIGLAAPQVGIPKRLIVVDLYPDKPE--------------VPPLVLINPE 92
Query: 66 MKILDYKDKVTA-LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHE 124
++ +Y +V A EGC S+ + +V R + V ++ DETG+P + A+ AR+IQHE
Sbjct: 93 IR--EYLGEVVAGQEGCLSIPGVFCEVMRPQGVVVSFKDETGRPRTLQADDLLARVIQHE 150
Query: 125 MDHLDGLLFTDSM 137
+DHL+G+LF D +
Sbjct: 151 IDHLNGVLFVDHV 163
>gi|87303617|ref|ZP_01086396.1| Formylmethionine deformylase [Synechococcus sp. WH 5701]
gi|87281841|gb|EAQ73805.1| Formylmethionine deformylase [Synechococcus sp. WH 5701]
Length = 232
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 9/134 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I +++ M D GL+APQ+ +PLR+ I + + E P V IN
Sbjct: 41 LITDLRDTMAARDGAGLAAPQIAVPLRVVIFGI--------TVNPRYPEAPPIPETVLIN 92
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE+ +D + EGC S+ L+ +V R+R++ G D G + + G+ AR++QH
Sbjct: 93 PEITPIDQACD-SGWEGCLSVPGLRGQVSRWRRIHYRGFDAEGHLIARSVAGFHARVVQH 151
Query: 124 EMDHLDGLLFTDSM 137
E DHLDG+LF D +
Sbjct: 152 ECDHLDGVLFPDRL 165
>gi|333029959|ref|ZP_08458020.1| Peptide deformylase [Bacteroides coprosuis DSM 18011]
gi|332740556|gb|EGJ71038.1| Peptide deformylase [Bacteroides coprosuis DSM 18011]
Length = 186
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 9/139 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M+ D GL+APQ+GL +RL ++ E F E +K F V
Sbjct: 27 LKELIQNMFETMEHADGIGLAAPQIGLSIRLVVMDLDVLSEDFPE--LKGFRK------V 78
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INP ++ +D D +T EGC SL + V R V +T DE + + EG+ AR+
Sbjct: 79 FINPYIEEVD-GDDITMGEGCLSLPGIGEDVTRPDVVYVTYQDENFEKHTEKVEGYLARV 137
Query: 121 IQHEMDHLDGLLFTDSMLP 139
+QHE DHLDG++F D + P
Sbjct: 138 MQHEFDHLDGIMFIDHISP 156
>gi|29833891|ref|NP_828525.1| peptide deformylase [Streptomyces avermitilis MA-4680]
gi|39931072|sp|Q825U9.1|DEF3_STRAW RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName:
Full=Polypeptide deformylase 3
gi|29611016|dbj|BAC75060.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680]
Length = 224
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 18 FGLSAPQVGLPLRLFIV--AFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
GL+APQVG+ LR+ ++ P PEE G ++ Q F V +NP + + D+
Sbjct: 76 VGLAAPQVGVGLRIAVIEDPAPVPEEV---GAVRGRVPQPF--RVLVNPSYEAVG-SDRA 129
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+ QA V R +V+LT LDE G+ GW ARI+QHE DHLDG+L+ D
Sbjct: 130 AFFEGCLSVPGWQAVVARPARVRLTALDEHGRAVDEEFTGWPARIVQHETDHLDGMLYLD 189
Query: 136 SMLPKSLEC 144
+SL
Sbjct: 190 RAELRSLSS 198
>gi|46581767|ref|YP_012575.1| polypeptide deformylase [Desulfovibrio vulgaris str. Hildenborough]
gi|120601080|ref|YP_965480.1| peptide deformylase [Desulfovibrio vulgaris DP4]
gi|387151882|ref|YP_005700818.1| peptide deformylase [Desulfovibrio vulgaris RCH1]
gi|46451190|gb|AAS97835.1| polypeptide deformylase [Desulfovibrio vulgaris str. Hildenborough]
gi|120561309|gb|ABM27053.1| peptide deformylase [Desulfovibrio vulgaris DP4]
gi|311232326|gb|ADP85180.1| peptide deformylase [Desulfovibrio vulgaris RCH1]
Length = 171
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 73/137 (53%), Gaps = 16/137 (11%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M M R D GL+APQVG RL +V PE+ S M +INP ++
Sbjct: 34 MVETMYREDGIGLAAPQVGANCRLIVVDVSGPEKRES-------------LMTFINPRLE 80
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
L +KV + EGC S+ +L+AKV R+ +V+LT D G A+G A +QHE+DH
Sbjct: 81 PLG-DEKVESEEGCLSVPALRAKVERHERVRLTARDLDGNEVCMDADGLLAICLQHEIDH 139
Query: 128 LDGLLFTD--SMLPKSL 142
L G LF D S L +SL
Sbjct: 140 LGGTLFIDRISRLKRSL 156
>gi|255082960|ref|XP_002504466.1| predicted protein [Micromonas sp. RCC299]
gi|226519734|gb|ACO65724.1| predicted protein [Micromonas sp. RCC299]
Length = 285
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 81/159 (50%), Gaps = 20/159 (12%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE---GDIKKFEMQAFPHMV 60
+I +M ++M+ + GL+APQ+G+P R+F++ D EE S+ D+ E FP V
Sbjct: 95 LIQEMISIMRNRGV-GLAAPQIGVPYRIFVME--DTEEGMSDVSKDDLVAQERAPFPAKV 151
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + + + EGC S V++ G GKP + A+GW ARI
Sbjct: 152 IINPTVTPVSNQ-SCAFFEGCLS-------------VRVRGYGGDGKPVDFVAKGWQARI 197
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLEL 159
QHEMDHLDG+L+ D M ++ V D L EL
Sbjct: 198 AQHEMDHLDGVLYVDRMDSRTFRRVDLLDQPLPGAHPEL 236
>gi|429219990|ref|YP_007181634.1| peptide deformylase [Deinococcus peraridilitoris DSM 19664]
gi|429130853|gb|AFZ67868.1| peptide deformylase [Deinococcus peraridilitoris DSM 19664]
Length = 209
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQVGLP+R+F+ A +E +EG + +V +NP +++++ +
Sbjct: 57 GLAAPQVGLPVRMFVAAEYADDEDENEGKETPLRSRVLRELVIVNPVLEVINRRKDTDYQ 116
Query: 79 EGCASLKSL-QAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + + V R R V+L D +G AE + AR+ QHE DHL+G LF D +
Sbjct: 117 EGCLSIPGIYEEGVARDRAVRLRYQDLSGAVQVIEAEDYLARVFQHEFDHLEGRLFLDRL 176
Query: 138 LPKSLEC 144
P E
Sbjct: 177 PPAVTET 183
>gi|393779167|ref|ZP_10367416.1| peptide deformylase [Capnocytophaga sp. oral taxon 412 str. F0487]
gi|392610744|gb|EIW93513.1| peptide deformylase [Capnocytophaga sp. oral taxon 412 str. F0487]
Length = 196
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 10/167 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPH- 58
+K +I M + M GL+APQVGL +RLF+V A P F++ D E Q F
Sbjct: 27 LKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVVDASP-----FADDDELSEEEQTFLKG 81
Query: 59 --MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
+IN ++ + + D EGC S+ ++ V R++++ + DE + T G
Sbjct: 82 FKKTFINAKI-VEETGDTWNFNEGCLSIPGVREDVSRHKQITIEYFDEDFNKQTLTIGGL 140
Query: 117 AARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
AARIIQHE DH++G+LFTD + + + + N+ G +++ Y M
Sbjct: 141 AARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISKGKIKVDYRM 187
>gi|260904911|ref|ZP_05913233.1| peptide deformylase [Brevibacterium linens BL2]
Length = 200
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 16/141 (11%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + + GL+APQ+G+ R+F+ D E
Sbjct: 37 LATLIADMHETLDASNGVGLAAPQIGVGKRIFVFNAEDEEAGVRR------------RGT 84
Query: 61 WINPEM---KILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
+INP + K+ D + D V EGC S+ SL + R +V + GLDETG+ S TAEGW
Sbjct: 85 FINPLLIASKVPDTRPDPVEETEGCLSVPSLDFPLKRADRVTVNGLDETGQSVSLTAEGW 144
Query: 117 AARIIQHEMDHLDGLLFTDSM 137
ARI+QHE DHL G L+ D +
Sbjct: 145 FARIMQHEYDHLQGTLYVDRL 165
>gi|258542784|ref|YP_003188217.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01]
gi|384042705|ref|YP_005481449.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-12]
gi|384051222|ref|YP_005478285.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-03]
gi|384054330|ref|YP_005487424.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-07]
gi|384057564|ref|YP_005490231.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-22]
gi|384060205|ref|YP_005499333.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-26]
gi|384063497|ref|YP_005484139.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-32]
gi|384119507|ref|YP_005502131.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256633862|dbj|BAH99837.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01]
gi|256636921|dbj|BAI02890.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-03]
gi|256639974|dbj|BAI05936.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-07]
gi|256643030|dbj|BAI08985.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-22]
gi|256646085|dbj|BAI12033.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-26]
gi|256649138|dbj|BAI15079.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-32]
gi|256652125|dbj|BAI18059.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655182|dbj|BAI21109.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-12]
Length = 174
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 8/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M+ ++ GL+APQV + RLF+ + P + SEG+ + + P IN
Sbjct: 32 LIADMRETLEESGGVGLAAPQVFVSQRLFLYSVP---LARSEGE----DDPSLPVQALIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P +K +D +K+ EGC SL L+ +VPRY+++ G D G+ A G+ A ++QH
Sbjct: 85 PVLKPVD-DEKLLRTEGCLSLPDLRGEVPRYKRIWYAGFDPHGQKVEGMATGFRAHVMQH 143
Query: 124 EMDHLDGLLF 133
EMDHLDG+L+
Sbjct: 144 EMDHLDGILY 153
>gi|374586242|ref|ZP_09659334.1| Peptide deformylase [Leptonema illini DSM 21528]
gi|373875103|gb|EHQ07097.1| Peptide deformylase [Leptonema illini DSM 21528]
Length = 184
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 7/134 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M + M++ GL+APQ+G+ RL IV F E + ++F V N
Sbjct: 34 LIADMFDTMEKAHGQGLAAPQIGVLKRLVIVRL------FREEGSGRDRQESFIDRVLFN 87
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P+++IL+ K+ + EGC S+ + V R R+++LT LDET + EG+ A + QH
Sbjct: 88 PQIEILE-GSKLGSWEGCLSVPGMAGYVERKRRIRLTFLDETARKHEELVEGYDAVVYQH 146
Query: 124 EMDHLDGLLFTDSM 137
E DHLDG+L+ D +
Sbjct: 147 ECDHLDGVLYVDRL 160
>gi|256819049|ref|YP_003140328.1| peptide deformylase [Capnocytophaga ochracea DSM 7271]
gi|256580632|gb|ACU91767.1| peptide deformylase [Capnocytophaga ochracea DSM 7271]
Length = 196
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 10/167 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPH- 58
+K +I M + M GL+APQVGL +RLF+V A P F++ D E Q F
Sbjct: 27 LKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVVDASP-----FADDDELSEEEQTFLKD 81
Query: 59 --MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
+IN ++ + + D EGC S+ ++ V R++++ + DE + T G
Sbjct: 82 FKKTFINAKI-VEETGDTWNFNEGCLSIPGVREDVSRHKQITIEYFDEDFNKQTLTIGGL 140
Query: 117 AARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
AARIIQHE DH++G+LFTD + + + + N+ G +++ Y M
Sbjct: 141 AARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISKGKVKVDYRM 187
>gi|443672771|ref|ZP_21137851.1| Peptide deformylase 4 [Rhodococcus sp. AW25M09]
gi|443414617|emb|CCQ16189.1| Peptide deformylase 4 [Rhodococcus sp. AW25M09]
Length = 239
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 8/141 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEG-DIKKF-EMQAFPHMVW 61
+I M+ M+ GL+APQ+G+PL++ ++ E+ + G D+ E P V
Sbjct: 76 LIEVMRATMRGAPGVGLAAPQIGIPLQVAVI-----EDLYEVGADVAHVRERTPLPFRVL 130
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
+NP + + V+ EGC S+ QA V R R+V+L DE G+ GW ARI+
Sbjct: 131 VNPRYTPVGSQ-TVSFFEGCLSVPGYQAVVTRAREVRLECTDELGREIDEVLRGWPARIV 189
Query: 122 QHEMDHLDGLLFTDSMLPKSL 142
HE DHLDG L+ D+ +SL
Sbjct: 190 AHETDHLDGTLYIDTAHTRSL 210
>gi|429755622|ref|ZP_19288261.1| peptide deformylase [Capnocytophaga sp. oral taxon 324 str. F0483]
gi|429173425|gb|EKY14946.1| peptide deformylase [Capnocytophaga sp. oral taxon 324 str. F0483]
Length = 196
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 10/167 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPH- 58
+K +I M + M GL+APQVGL +RLF+V A P F++ D E Q F
Sbjct: 27 LKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVVDASP-----FADDDELSEEEQTFLKG 81
Query: 59 --MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
+IN ++ + + D EGC S+ ++ V R++++ + DE + T G
Sbjct: 82 FKKTFINAKI-VEETGDTWNFNEGCLSIPGVREDVSRHKQITIEYFDEDFNKQTLTIGGL 140
Query: 117 AARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
AARIIQHE DH++G+LFTD + + + + N+ G +++ Y M
Sbjct: 141 AARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISKGKVKVDYRM 187
>gi|420150161|ref|ZP_14657321.1| peptide deformylase [Capnocytophaga sp. oral taxon 335 str. F0486]
gi|429747594|ref|ZP_19280851.1| peptide deformylase [Capnocytophaga sp. oral taxon 380 str. F0488]
gi|394752220|gb|EJF35922.1| peptide deformylase [Capnocytophaga sp. oral taxon 335 str. F0486]
gi|429162766|gb|EKY05054.1| peptide deformylase [Capnocytophaga sp. oral taxon 380 str. F0488]
Length = 196
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 10/167 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPH- 58
+K +I M + M GL+APQVGL +RLF+V A P F++ D E Q F
Sbjct: 27 LKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVVDASP-----FADDDELSEEEQTFLKG 81
Query: 59 --MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
+IN ++ + + D EGC S+ ++ V R++++ + DE + T G
Sbjct: 82 FKKTFINAKI-VEETGDTWNFNEGCLSIPGVREDVSRHKQITIEYFDEDFNKQTLTIGGL 140
Query: 117 AARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
AARIIQHE DH++G+LFTD + + + + N+ G +++ Y M
Sbjct: 141 AARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISKGKVKVDYRM 187
>gi|145342766|ref|XP_001416260.1| Peptide deformylase, mitochondrial [Ostreococcus lucimarinus
CCE9901]
gi|144576485|gb|ABO94553.1| Peptide deformylase, mitochondrial [Ostreococcus lucimarinus
CCE9901]
Length = 274
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 78/146 (53%), Gaps = 9/146 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEM---QAFPHMV 60
+I +M V R GL+APQ+G R +V D E S+ + M +AF V
Sbjct: 83 LIAEMLRVC-RARGVGLAAPQLGA--RRRVVVLEDTTEGMSDETSEALAMKRREAFRAKV 139
Query: 61 WINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+NP + + D A EGC S+ +A V R+ +V+ G GKP + A GW AR
Sbjct: 140 IVNPTLTPI--GDASAAFFEGCLSVAGYRAVVRRHLRVRCRGYGGDGKPVDFEAVGWEAR 197
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECV 145
I+QHE+DHLDG+L+TD M ++L V
Sbjct: 198 ILQHEVDHLDGVLYTDRMESRTLRRV 223
>gi|315224454|ref|ZP_07866281.1| peptide deformylase [Capnocytophaga ochracea F0287]
gi|420159072|ref|ZP_14665881.1| peptide deformylase [Capnocytophaga ochracea str. Holt 25]
gi|314945475|gb|EFS97497.1| peptide deformylase [Capnocytophaga ochracea F0287]
gi|394762759|gb|EJF44946.1| peptide deformylase [Capnocytophaga ochracea str. Holt 25]
Length = 196
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV---AFPDPEESFSEGDIKKFEMQAFP 57
+K +I M + M GL+APQVGL +RLF+V F D +E SE D + F ++ F
Sbjct: 27 LKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVVDASPFADDDE-LSE-DEQTF-LKGFK 83
Query: 58 HMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWA 117
+IN ++ + + D EGC S+ ++ V R++++ + DE + T G A
Sbjct: 84 K-TFINAKI-VEETGDTWNFNEGCLSIPGVREDVSRHKQITIEYFDEDFNKQTLTIGGLA 141
Query: 118 ARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
ARIIQHE DH++G+LFTD + + + + N+ G +++ Y M
Sbjct: 142 ARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISKGKVKVDYRM 187
>gi|340786487|ref|YP_004751952.1| peptide deformylase [Collimonas fungivorans Ter331]
gi|340551754|gb|AEK61129.1| Peptide deformylase [Collimonas fungivorans Ter331]
Length = 178
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M + M + GL+APQ+G+ L+L I F + +++ + A P V
Sbjct: 29 LEALIADMFDTMYAANGAGLAAPQIGVNLQLVIFGF--------KNNVRYPDAPAVPETV 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ L D EGC S+ L+ VPR+ + G D+TG S +G+ AR+
Sbjct: 81 LINPVLRPLS-DDTEDGWEGCLSVPGLRGVVPRWTSLHYEGFDQTGAAISRDVDGFHARV 139
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL+G+L+
Sbjct: 140 VQHETDHLNGILY 152
>gi|91775819|ref|YP_545575.1| peptide deformylase [Methylobacillus flagellatus KT]
gi|91709806|gb|ABE49734.1| Peptide deformylase [Methylobacillus flagellatus KT]
Length = 177
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 74/134 (55%), Gaps = 11/134 (8%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHM 59
+ +I M++ M + G++APQ+G+ LR+ I F G ++ + + P+
Sbjct: 29 LHALIKDMEDTMAHLNGAGIAAPQIGVSLRVVI---------FGVGHNPRYPDAEQVPYT 79
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V +NP + + ++ EGC S+ ++ VPRY+++ TG D+ G P G+ AR
Sbjct: 80 VLVNPTLTPIG-EELEDGWEGCLSVPGMRGIVPRYQRLHYTGYDQYGNPIDRLVSGFHAR 138
Query: 120 IIQHEMDHLDGLLF 133
++QHE DHLDG+L+
Sbjct: 139 VVQHECDHLDGILY 152
>gi|152983750|ref|YP_001349601.1| peptide deformylase [Pseudomonas aeruginosa PA7]
gi|452881264|ref|ZP_21958072.1| peptide deformylase [Pseudomonas aeruginosa VRFPA01]
gi|150958908|gb|ABR80933.1| peptide deformylase [Pseudomonas aeruginosa PA7]
gi|452182466|gb|EME09484.1| peptide deformylase [Pseudomonas aeruginosa VRFPA01]
Length = 179
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 11/134 (8%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M+ GL+APQ+G+ L+L I F E + + A P +
Sbjct: 30 LQRLIDDMFETMRHVGGVGLAAPQIGVDLQLVIFGFERSE--------RYPDAPAVPPTI 81
Query: 61 WINPEMKILDYKDKVT-ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+NP + LD D++ EGC S+ L+ VPR+R+++ G+D GKP + EG+ AR
Sbjct: 82 LLNPRITALD--DEIEEGWEGCLSVPGLRGMVPRHRRIRYQGVDPQGKPIDRSVEGFHAR 139
Query: 120 IIQHEMDHLDGLLF 133
++QHE DHL G L+
Sbjct: 140 VVQHECDHLIGRLY 153
>gi|392952705|ref|ZP_10318260.1| peptide deformylase [Hydrocarboniphaga effusa AP103]
gi|391861667|gb|EIT72195.1| peptide deformylase [Hydrocarboniphaga effusa AP103]
Length = 176
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M + M+ + GL+APQ+G+ LR+ I F + QA P +
Sbjct: 28 LRELVADMFDTMRALNGAGLAAPQIGVDLRVVIFGF--------TSSPRYPNAQAVPETI 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L ++ EGC S+ L+ VPRY++++ TG D G +G+ AR+
Sbjct: 80 LINPVLTPLS-DEQEEGWEGCLSVPGLRGVVPRYQRLRYTGFDLHGDVIDRNVDGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHLDG+L+
Sbjct: 139 VQHECDHLDGILY 151
>gi|428220446|ref|YP_007104616.1| peptide deformylase [Synechococcus sp. PCC 7502]
gi|427993786|gb|AFY72481.1| peptide deformylase [Synechococcus sp. PCC 7502]
Length = 189
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 16/138 (11%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHM 59
++ I LQM M + GL+APQVG+ ++ +V PD E + P +
Sbjct: 42 IRAIALQMLQTMYSDNGIGLAAPQVGIHKQIIVVDCEPDNESA--------------PPL 87
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+ INPE+K D +T EGC S+ + V R ++ + DE GKP + T +G AR
Sbjct: 88 ILINPELK-SSGGDIITGEEGCLSVPDVFLDVQRPDQITVNFRDEEGKPKTLTTDGILAR 146
Query: 120 IIQHEMDHLDGLLFTDSM 137
+IQHE+DHL+G++F D +
Sbjct: 147 VIQHELDHLNGVMFVDRV 164
>gi|334148003|ref|YP_004510932.1| peptide deformylase [Porphyromonas gingivalis TDC60]
gi|419970705|ref|ZP_14486188.1| peptide deformylase [Porphyromonas gingivalis W50]
gi|333805159|dbj|BAK26366.1| peptide deformylase [Porphyromonas gingivalis TDC60]
gi|392610199|gb|EIW92982.1| peptide deformylase [Porphyromonas gingivalis W50]
Length = 225
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 11/162 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M D GL+APQ+GLP+R+ ++ +E + E K+
Sbjct: 63 LKELIANMTESMYHSDGIGLAAPQIGLPIRVLVIDADPLKEDYPECAGFKR--------- 113
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V IN ++ +D T EGC SL ++ KV R +++ +DE +P +G+AAR
Sbjct: 114 VMINAHIEERG-EDLCTEYEGCLSLPAIHEKVERPTSIRIRYVDEDFQPHEEVLQGFAAR 172
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
++QHE DH+DG LF D + P + + + N+ G + Y
Sbjct: 173 VVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIKGKVRTSY 214
>gi|37521797|ref|NP_925174.1| peptide deformylase [Gloeobacter violaceus PCC 7421]
gi|39930959|sp|Q7NIF5.1|DEF2_GLOVI RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|35212795|dbj|BAC90169.1| polypeptide deformylase [Gloeobacter violaceus PCC 7421]
Length = 187
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 68/131 (51%), Gaps = 14/131 (10%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
QM M D GL+APQVG+ R+ +V DPE + A P +V INP +
Sbjct: 47 QMLQTMYSADGIGLAAPQVGVNKRMIVVDI-DPENA------------ARPPLVLINPLI 93
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
K D EGC S+ S+ A V R +V T D G+P + A G AR IQHE+D
Sbjct: 94 KQFS-SDLAVDQEGCLSVPSIYADVRRPERVVATYRDLNGRPVTLEATGLLARCIQHEID 152
Query: 127 HLDGLLFTDSM 137
HLDG+LF D +
Sbjct: 153 HLDGVLFVDRV 163
>gi|269796214|ref|YP_003315669.1| N-formylmethionyl-tRNA deformylase [Sanguibacter keddieii DSM
10542]
gi|269098399|gb|ACZ22835.1| N-formylmethionyl-tRNA deformylase [Sanguibacter keddieii DSM
10542]
Length = 211
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 74/139 (53%), Gaps = 14/139 (10%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIV---AFPDPEESFSEGDIKKFEMQAFPHMVWINP 64
M+ M GL+APQ+G+ L++ ++ DPE+ E H V +NP
Sbjct: 55 MRLTMVDAPGVGLAAPQIGIGLQIAVLHDAGSTDPED--------PRERTPLEHRVLVNP 106
Query: 65 EMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
+ + D+V + EGC S++ QA V R+R V+LTG DETG+ GW ARI+QH
Sbjct: 107 SYEGV--GDEVRSFYEGCLSVEGYQAVVARHRTVRLTGQDETGRALDEQLTGWPARIVQH 164
Query: 124 EMDHLDGLLFTDSMLPKSL 142
E DHL G L+ D +SL
Sbjct: 165 ETDHLRGQLYIDHAETRSL 183
>gi|308177361|ref|YP_003916767.1| peptide deformylase [Arthrobacter arilaitensis Re117]
gi|307744824|emb|CBT75796.1| peptide deformylase [Arthrobacter arilaitensis Re117]
Length = 190
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 17/144 (11%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M M GL+APQ+GL LR+F F D +++ G V
Sbjct: 28 LRALVADMHLTMDEAHGVGLAAPQIGLGLRMFTYVFADQDDAPERG-------------V 74
Query: 61 WINPEMKILDYKDKVTA----LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
INP++ + EGC S+ L + R ++ G DE G P S+ A GW
Sbjct: 75 VINPKLTLSKVSQAPAHPDEDSEGCLSVPGLNYPLQRADYAKVEGFDEFGNPISFEAHGW 134
Query: 117 AARIIQHEMDHLDGLLFTDSMLPK 140
ARI+QHE DHLDG L+ D + P+
Sbjct: 135 FARIMQHEYDHLDGYLYVDKLQPR 158
>gi|347760134|ref|YP_004867695.1| peptide deformylase [Gluconacetobacter xylinus NBRC 3288]
gi|347579104|dbj|BAK83325.1| peptide deformylase [Gluconacetobacter xylinus NBRC 3288]
Length = 176
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 8/137 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +++ M M GL+APQV LRLF+ P P S D P
Sbjct: 29 VHVLVADMIETMLDAQGAGLAAPQVHQGLRLFVYHVP-PTRSTGADD------PPCPPAA 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE++ +D +++V LEGC S+ ++ VPRYR++ GLD G+ A G+ A +
Sbjct: 82 LINPELEPVD-EERVDRLEGCLSIPGMRGWVPRYRRIAYRGLDAHGQMVQGVASGFLANV 140
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHE DHL+G+L+ M
Sbjct: 141 LQHEYDHLNGILYPMRM 157
>gi|254468385|ref|ZP_05081791.1| peptide deformylase [beta proteobacterium KB13]
gi|207087195|gb|EDZ64478.1| peptide deformylase [beta proteobacterium KB13]
Length = 162
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I MK MK D GL+APQ+G+ RL I F D + + E D + P V
Sbjct: 20 LTTLIDDMKETMKANDGAGLAAPQIGVFKRLVIFGF-DTNDRYPEAD-------SVPFTV 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L +K EGC S+ L+ VPR+ ++ G D G E + AR+
Sbjct: 72 LINPIITPLS-DEKENGWEGCLSVPGLRGVVPRFTHIKYEGYDAEGNKIEREVEDFHARV 130
Query: 121 IQHEMDHLDGLLF 133
+QHE DHLDG+L+
Sbjct: 131 VQHECDHLDGILY 143
>gi|326438101|gb|EGD83671.1| hypothetical protein PTSG_12149 [Salpingoeca sp. ATCC 50818]
Length = 214
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 71/132 (53%), Gaps = 11/132 (8%)
Query: 18 FGLSAPQVGLPLRLFIVAF-PDP---EESFSEGDIKKFEMQAFPHMVWINPEMKILDYKD 73
FGL APQ+G L+LF++ PD E +F DIK +M+ P NP +K Y
Sbjct: 58 FGLCAPQIGESLQLFVMEVTPDMIELETNFR--DIKMLDMRPVPLTAIANPRLK---YGK 112
Query: 74 KV-TALEGCASLKSLQAKVPRYRKVQLTGLDE-TGKPDSWTAEGWAARIIQHEMDHLDGL 131
K+ T E C S+ A V R + LTGL TG S GW ARI+QHE+DHL+G
Sbjct: 113 KMSTHRESCLSIPGYSAHVTRPVDIHLTGLCAVTGTDVSVALSGWTARIVQHEVDHLNGC 172
Query: 132 LFTDSMLPKSLE 143
L+TD M +L
Sbjct: 173 LYTDKMDASTLS 184
>gi|34541765|ref|NP_906244.1| peptide deformylase [Porphyromonas gingivalis W83]
gi|39930820|sp|Q7MT07.1|DEF_PORGI RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|34398083|gb|AAQ67143.1| polypeptide deformylase [Porphyromonas gingivalis W83]
Length = 189
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 11/162 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M D GL+APQ+GLP+R+ ++ +E + E K+
Sbjct: 27 LKELIANMTESMYHSDGIGLAAPQIGLPIRVLVIDADPLKEDYPECAGFKR--------- 77
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V IN ++ +D T EGC SL ++ KV R +++ +DE +P +G+AAR
Sbjct: 78 VMINAHIEERG-EDLCTEYEGCLSLPAIHEKVERPTSIRIRYVDEDFQPHEEVLQGFAAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
++QHE DH+DG LF D + P + + + N+ G + Y
Sbjct: 137 VVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIKGKVRTSY 178
>gi|313146202|ref|ZP_07808395.1| peptide deformylase(PDF) [Bacteroides fragilis 3_1_12]
gi|424662701|ref|ZP_18099738.1| peptide deformylase [Bacteroides fragilis HMW 616]
gi|313134969|gb|EFR52329.1| peptide deformylase(PDF) [Bacteroides fragilis 3_1_12]
gi|404576391|gb|EKA81129.1| peptide deformylase [Bacteroides fragilis HMW 616]
Length = 184
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M D GL+APQ+GLP+R+ ++ E + E D +K
Sbjct: 27 LKELIENMFETMDHADGVGLAAPQIGLPVRVVVINLDVLSEDYPEYKDFRK--------- 77
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+IN + +++ D+V+ EGC SL + V R K+ + +DE + EG+ AR
Sbjct: 78 AYINAHIDVVE-GDEVSMEEGCLSLPGIHESVKRGSKIHVRYMDENFVEHNEVVEGFLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHLDG +F D + P
Sbjct: 137 VMQHEFDHLDGKMFIDHISP 156
>gi|329114617|ref|ZP_08243376.1| Peptide deformylase 1 [Acetobacter pomorum DM001]
gi|326696097|gb|EGE47779.1| Peptide deformylase 1 [Acetobacter pomorum DM001]
Length = 174
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 8/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M+ ++ GL+APQV + RLFI + P + SEG+ + P IN
Sbjct: 32 LIADMRETLEESGGVGLAAPQVFVSQRLFIYSVP---LARSEGE----DDPPLPVQALIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + +D + ++ A EGC SL L+ +VPRY+++ G D+ G+ A G+ A ++QH
Sbjct: 85 PILTPVDDETQLRA-EGCLSLPDLRGEVPRYKRIWYAGFDQHGQKVEGMATGFRAHVMQH 143
Query: 124 EMDHLDGLLF 133
EMDHLDG+L+
Sbjct: 144 EMDHLDGILY 153
>gi|330995383|ref|ZP_08319293.1| peptide deformylase [Paraprevotella xylaniphila YIT 11841]
gi|329575878|gb|EGG57402.1| peptide deformylase [Paraprevotella xylaniphila YIT 11841]
Length = 185
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 14/146 (9%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M ++R + GL+APQ+GL +RL ++ D+ ++ + F H
Sbjct: 27 LKTLIDNMYETLERSEGIGLAAPQIGLSIRLVVINL-----DLISDDLPEY--KGFVH-A 78
Query: 61 WINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
+INP IL+Y D T EGC SL + V R +++++ LDE +P EG+ A
Sbjct: 79 FINPH--ILEYDDAETDSMEEGCLSLPGIHEPVRRPTRIRVSYLDEVFQPHDEWVEGYLA 136
Query: 119 RIIQHEMDHLDGLLFTD--SMLPKSL 142
R++QHE DHLDG +F D SML K +
Sbjct: 137 RVMQHEFDHLDGKMFVDHLSMLRKQM 162
>gi|295395559|ref|ZP_06805753.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
gi|294971578|gb|EFG47459.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
Length = 237
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M+ M GL+APQVG+ LRL + DP + +E + E P IN
Sbjct: 71 LLTAMRTTMLAAPGVGLAAPQVGISLRLAVCE--DPGTTSAEHAAAR-ERTPLPFTALIN 127
Query: 64 PEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
P + D++ A EGC S+ QA V R R V LT D G + GWA RII
Sbjct: 128 PTYQ--PATDQLVAFYEGCLSIPGYQAVVARPRTVTLTAHDHQGATITKDITGWAGRIIA 185
Query: 123 HEMDHLDGLLFTDSMLPKSL 142
HE DHLDG+L+ D +SL
Sbjct: 186 HETDHLDGILYLDKAEMRSL 205
>gi|124267003|ref|YP_001021007.1| peptide deformylase [Methylibium petroleiphilum PM1]
gi|124259778|gb|ABM94772.1| Peptide deformylase [Methylibium petroleiphilum PM1]
Length = 177
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M+ + GL+APQ+G+ L+L I F E + E P V
Sbjct: 29 LHALIEDMFDTMEAANGAGLAAPQIGVDLQLVIFGFTKSE--------RYPEAPPVPRTV 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP++ L +D EGC S+ L+ VPR+++++ TG D G+ AEG+ AR+
Sbjct: 81 LINPQITPLS-EDLEDGWEGCLSVPGLRGVVPRHQRIRYTGFDPQGRRIEREAEGFHARV 139
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 140 VQHECDHLAGVLY 152
>gi|330994009|ref|ZP_08317939.1| Peptide deformylase 2 [Gluconacetobacter sp. SXCC-1]
gi|329758955|gb|EGG75469.1| Peptide deformylase 2 [Gluconacetobacter sp. SXCC-1]
Length = 180
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M M GL+APQV LRLF+ P P S E D P
Sbjct: 33 LRTLVADMIETMLDAQGAGLAAPQVHHGLRLFVYQVP-PGRSAGEDD------PPCPPAA 85
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + +D + V LEGC S+ ++ VPRYR++ G++ G+P A G+ A +
Sbjct: 86 LINPVLDPVD-TEMVDRLEGCLSIPGMRGWVPRYRRIAYRGINGQGQPVHGVASGFLANV 144
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHE DHLDG+L+ M
Sbjct: 145 LQHEYDHLDGILYPMRM 161
>gi|332876937|ref|ZP_08444690.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332685045|gb|EGJ57889.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 192
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 6/165 (3%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHM- 59
+ +I M + M GL+APQ+GLP+RLF+V D + D+ + E +
Sbjct: 27 LNTLIANMYDTMNYAYGVGLAAPQIGLPIRLFVV---DTAPFADDDDLTEEERTFLSNFK 83
Query: 60 -VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
+IN ++ + DK EGC S+ ++ V R +++ + +DE P T G AA
Sbjct: 84 KTFINAKI-TEETGDKWLFNEGCLSIPGVREDVSRQKQITIEFVDEQFTPQRLTLTGLAA 142
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
R++QHE DH++G+LFTD + + + + N+ G +++ Y M
Sbjct: 143 RVVQHEYDHIEGILFTDKLSSFKKQLIKGKLTNISKGKVKVDYRM 187
>gi|188995931|ref|YP_001930183.1| peptide deformylase [Porphyromonas gingivalis ATCC 33277]
gi|238689275|sp|B2RMJ1.1|DEF_PORG3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|188595611|dbj|BAG34586.1| putative peptide deformylase [Porphyromonas gingivalis ATCC 33277]
Length = 189
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M D GL+APQ+GLP+R+ ++ +E + E K+
Sbjct: 27 LKELIANMTESMYHSDGIGLAAPQIGLPIRVLVIDADPLKEDYPECAGFKR--------- 77
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V IN ++ +D T EGC SL ++ KV R +++ +DE +P G+AAR
Sbjct: 78 VMINAHIEERG-EDLCTEYEGCLSLPAIHEKVERPTSIRIRYVDEDFQPHEEVLHGFAAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
++QHE DH+DG LF D + P + + + N+ G + Y
Sbjct: 137 VVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIKGKVRTSY 178
>gi|51892481|ref|YP_075172.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863]
gi|81692121|sp|Q67PR5.1|DEF_SYMTH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|51856170|dbj|BAD40328.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863]
Length = 217
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 71/128 (55%), Gaps = 17/128 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M M GL+APQVG+ RL +V DP++ G + +++ INPE
Sbjct: 35 MTETMYAAPGVGLAAPQVGVSKRLIVV---DPQD----GSGQLYQL--------INPE-- 77
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
I+ + V EGC S+ + V RY KVQ+ LD TGK AEG+ ARI QHE+DH
Sbjct: 78 IVKAEGWVKGTEGCLSIPGMVGDVWRYEKVQVVALDRTGKKVWIDAEGYLARIFQHEIDH 137
Query: 128 LDGLLFTD 135
LDG+L+TD
Sbjct: 138 LDGILYTD 145
>gi|253996543|ref|YP_003048607.1| peptide deformylase [Methylotenera mobilis JLW8]
gi|253983222|gb|ACT48080.1| peptide deformylase [Methylotenera mobilis JLW8]
Length = 181
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 84/152 (55%), Gaps = 9/152 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I +++ M+ + G++APQ+G+ LR+ I +P + + + + A P+ V IN
Sbjct: 32 LIQDLEDTMQHMNGAGIAAPQIGVSLRVVIFGQKEP----AAVNPRYPDADAVPYTVLIN 87
Query: 64 PEMKILDYKDKV-TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
P++ ++ DK+ EGC S+ ++ VPR+ K+ TG D+ G G+ AR++Q
Sbjct: 88 PKLTLI--GDKIENDWEGCLSVPGMRGIVPRHLKLHYTGFDQYGNKVDRLVSGFHARVVQ 145
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQN 154
HE DHLDG+L+ M + L+ + D+ N
Sbjct: 146 HECDHLDGVLY--PMRIRDLKDFGYSDVFFPN 175
>gi|395762163|ref|ZP_10442832.1| peptide deformylase [Janthinobacterium lividum PAMC 25724]
Length = 178
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M + GL+APQ+G+ L+L I F + +++ + P V
Sbjct: 29 LHALIADMFDTMHAANGAGLAAPQIGVNLQLVIYGF--------KNNLRYPDAPQVPETV 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L + K EGC S+ L+ VPR+ ++ G D+ G+P S +G+ AR+
Sbjct: 81 LINPVLTPLTQR-KEEGFEGCLSVPGLRGSVPRWSELHYEGADQFGQPISRDCDGFHARV 139
Query: 121 IQHEMDHLDGLLF 133
+QHE+DHL G+L+
Sbjct: 140 VQHEVDHLHGILY 152
>gi|332878465|ref|ZP_08446186.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|357044510|ref|ZP_09106160.1| peptide deformylase [Paraprevotella clara YIT 11840]
gi|332683560|gb|EGJ56436.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|355532563|gb|EHH01946.1| peptide deformylase [Paraprevotella clara YIT 11840]
Length = 185
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 14/146 (9%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M ++R + GL+APQ+GL +RL ++ D+ ++ + F H
Sbjct: 27 LKTLIDNMYETLERSEGIGLAAPQIGLSIRLVVINL-----DLISDDLPEY--KGFVH-A 78
Query: 61 WINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
+INP IL+Y D T EGC SL + V R +++++ LDE +P EG+ A
Sbjct: 79 FINPH--ILEYDDTETDSMEEGCLSLPGIHEPVRRPTRIRVSYLDEDFQPHDEWVEGYLA 136
Query: 119 RIIQHEMDHLDGLLFTD--SMLPKSL 142
R++QHE DHLDG +F D SML K +
Sbjct: 137 RVMQHEFDHLDGKMFVDHLSMLRKQM 162
>gi|357414805|ref|YP_004926541.1| peptide deformylase [Streptomyces flavogriseus ATCC 33331]
gi|320012174|gb|ADW07024.1| peptide deformylase [Streptomyces flavogriseus ATCC 33331]
Length = 169
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 14/134 (10%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M M + GL+A Q+G+PLR+F+ PD +E ++ H+V N
Sbjct: 26 LVEDMFATMYAANGVGLAANQIGVPLRVFVYDCPDDDE-----------VRHLGHLV--N 72
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + D D V EGC SL ++A PR+ + + G G+P T GW AR +QH
Sbjct: 73 PVLVEAD-GDTVRGPEGCLSLPGIEAGTPRFDRAVVEGRTVAGEPVRITGTGWFARCLQH 131
Query: 124 EMDHLDGLLFTDSM 137
E DHLDG ++TD +
Sbjct: 132 ECDHLDGRVYTDRL 145
>gi|297204169|ref|ZP_06921566.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
gi|197714146|gb|EDY58180.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
Length = 218
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 10/138 (7%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMVWINP 64
++ M GL+APQVG+PLR+ ++ P P E + G + + P V +NP
Sbjct: 57 LRVTMHAAPGVGLAAPQVGVPLRIAVIEDPAPVPEEIRLARGRVPQ------PFRVLVNP 110
Query: 65 EMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHE 124
+ + EGC S+ QA V R +V+LT DE G+ GW ARI+QHE
Sbjct: 111 SYAPVGTP-RAAFFEGCLSVPGWQAVVARPAEVRLTCEDENGRAVDEVFSGWPARIVQHE 169
Query: 125 MDHLDGLLFTDSMLPKSL 142
DHLDG+L+ D +SL
Sbjct: 170 TDHLDGVLYLDRAEVRSL 187
>gi|118594792|ref|ZP_01552139.1| peptide deformylase [Methylophilales bacterium HTCC2181]
gi|118440570|gb|EAV47197.1| peptide deformylase [Methylophilales bacterium HTCC2181]
Length = 171
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
II M MK D GL+APQ+GL ++L I F D E + + + P V IN
Sbjct: 32 IIEDMIETMKANDGAGLAAPQIGLSIQLVIFGF-DSNERYPDA-------EEVPFTVLIN 83
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE+ L+ ++ EGC S+ L+ VPRY+ + G+D+ G+ +G+ AR++QH
Sbjct: 84 PEIIPLE-EEMEDGWEGCLSVPGLRGVVPRYKSIHYKGIDQFGQTIDRKVDGFHARVVQH 142
Query: 124 EMDHLDGLLFTDSMLPKSL 142
E DHL G L+ M SL
Sbjct: 143 ECDHLIGKLYPMRMNDMSL 161
>gi|409422749|ref|ZP_11259833.1| peptide deformylase [Pseudomonas sp. HYS]
Length = 179
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + E +A P + +N
Sbjct: 33 LIADMFETMEHVGGVGLAAPQIGVDLQLVIFGFERSE--------RYPEAEAVPRTILLN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + + EGC S+ L+ VPRY++++ G+D G+P AEG+ AR++QH
Sbjct: 85 PLITPLSTEVE-DGWEGCLSVPGLRGVVPRYQRIRYEGVDPQGQPIVRNAEGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|357059889|ref|ZP_09120665.1| peptide deformylase [Alloprevotella rava F0323]
gi|355377156|gb|EHG24385.1| peptide deformylase [Alloprevotella rava F0323]
Length = 185
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 12/138 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M++ + GL+APQ+G +R+ +++ ++ F E + + H +IN
Sbjct: 30 LIENMFETMEKSNGVGLAAPQIGKSIRVVVISLDVLKDDFPE-------YEGYNH-AFIN 81
Query: 64 PEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
P I++ D TAL EGC SL L V R ++ +T LDE +P +G+ AR++
Sbjct: 82 PH--IVEVDDSETALLDEGCLSLPGLSEPVRRPTRIHVTYLDENLQPHDEWVDGYLARVM 139
Query: 122 QHEMDHLDGLLFTDSMLP 139
QHE DHL+G++FTD + P
Sbjct: 140 QHEFDHLEGVVFTDKISP 157
>gi|363582387|ref|ZP_09315197.1| formylmethionine deformylase [Flavobacteriaceae bacterium HQM9]
Length = 175
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 78/139 (56%), Gaps = 11/139 (7%)
Query: 10 NVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKIL 69
+ M+ + G++APQV R+FI+ + + + ++F V INPE++ L
Sbjct: 40 HTMRSQNGAGIAAPQVACLKRIFIMEM--------QNNPRYPNKESFLLNVVINPEIEYL 91
Query: 70 DYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLD 129
D + V + EGC S+ +L+ ++ R++ + L GLD G P G+AA + QHEMDHLD
Sbjct: 92 D-NELVDSWEGCLSIPTLRGRLKRHKNILLKGLDRKGVPFEKKMTGFAAIVAQHEMDHLD 150
Query: 130 GLLFTDSMLPKSLECVCWQ 148
G LF D M S+E + +Q
Sbjct: 151 GTLFIDKM--NSMETLTFQ 167
>gi|83592380|ref|YP_426132.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170]
gi|386349094|ref|YP_006047342.1| peptide deformylase [Rhodospirillum rubrum F11]
gi|83575294|gb|ABC21845.1| Peptide deformylase [Rhodospirillum rubrum ATCC 11170]
gi|346717530|gb|AEO47545.1| peptide deformylase [Rhodospirillum rubrum F11]
Length = 169
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 65/116 (56%), Gaps = 9/116 (7%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQV +PLR+ I P + +EG A P V INP++ L ++ V
Sbjct: 36 VGLAAPQVHVPLRVMIFHVPANRSTEAEG--------AVPLTVLINPQLTPLG-EEMVED 86
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLF 133
EGC SL L VPRYR ++ G+D G+ A + AR++QHE DHLDG+L+
Sbjct: 87 WEGCLSLPGLTGLVPRYRSLRYRGVDLDGREVEREARDFHARVVQHEYDHLDGVLY 142
>gi|226357360|ref|YP_002787100.1| peptide deformylase [Deinococcus deserti VCD115]
gi|226319350|gb|ACO47346.1| putative peptide deformylase (polypeptide deformylase) (PDF)
[Deinococcus deserti VCD115]
Length = 220
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQVGLP+R+F+ + +E +EG + + V +NP + +LD K +
Sbjct: 62 GLAAPQVGLPVRMFVAVEYEDDEEENEGQDTPLKSRVLREFVMLNPVLSVLDKKKDRSYQ 121
Query: 79 EGCASLKSL-QAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + + V R R +Q+ D G + A+ + AR+ QHE DHLDG+ F D +
Sbjct: 122 EGCLSIPGIYEEGVSRARAIQVRYTDLDGAQRTIQADDYLARVFQHEADHLDGIFFLDRL 181
Query: 138 LPKSLE 143
P+ E
Sbjct: 182 PPEVTE 187
>gi|304382925|ref|ZP_07365407.1| peptide deformylase [Prevotella marshii DSM 16973]
gi|304335950|gb|EFM02198.1| peptide deformylase [Prevotella marshii DSM 16973]
Length = 186
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 13/161 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHMVWI 62
+I M M D GL+APQ+G +R+ ++ + F E D +K +I
Sbjct: 30 LIANMFETMDSSDGIGLAAPQIGKSIRVVVIDLNVLSDDFPEYKDFRK---------AYI 80
Query: 63 NPE-MKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDET-GKPDSWTAEGWAARI 120
NP ++I + +K EGC S+ L KVPR+ ++ +T LDE D W EG+ AR+
Sbjct: 81 NPHILEIDETSEKRLMEEGCLSIPGLHEKVPRFSRIHVTYLDEAFVSHDEWV-EGYLARV 139
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
+QHE DHL+G +F D + P + + + L G E Y
Sbjct: 140 MQHEFDHLEGKMFVDHISPLRKQLIKNKLKALTQGRYECSY 180
>gi|33862657|ref|NP_894217.1| peptide deformylase [Prochlorococcus marinus str. MIT 9313]
gi|39931000|sp|Q7V8G6.1|DEF1_PROMM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|33634573|emb|CAE20559.1| Formylmethionine deformylase [Prochlorococcus marinus str. MIT
9313]
Length = 192
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I +++ +K GL+APQ+G+PLR+ + P + E + P + IN
Sbjct: 32 LIKDLQDTVKAHQGAGLAAPQIGVPLRVVLFGGGGPNPRYPE-------APSIPQTLLIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + + D EGC S+ L+ KV R+ ++ L+E G EG+ AR+IQH
Sbjct: 85 PVLTPIG-SDLEDGWEGCLSVPGLRGKVSRWSRIHYRALNEDGFEVEHCLEGFPARVIQH 143
Query: 124 EMDHLDGLLFTDSML 138
E DHLDG+LF D ++
Sbjct: 144 ECDHLDGVLFPDRLV 158
>gi|258647932|ref|ZP_05735401.1| peptide deformylase [Prevotella tannerae ATCC 51259]
gi|260851771|gb|EEX71640.1| peptide deformylase [Prevotella tannerae ATCC 51259]
Length = 185
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M + D GL+APQ+G +R+ +++ +E F E F H +IN
Sbjct: 30 LIEDMYETMDKSDGVGLAAPQIGKAIRVIVISLDVLKEDFPE-------YAGFRH-AYIN 81
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + D + T EGC SL + V R ++ + DE +P EG+ AR++QH
Sbjct: 82 PHIIEFDDSEISTLEEGCLSLPGIHEPVKRPTRIHVQYRDENFEPHDEWVEGYLARVMQH 141
Query: 124 EMDHLDGLLFTDSMLP 139
E+DHL+G +FTD + P
Sbjct: 142 EIDHLEGHVFTDRISP 157
>gi|224825207|ref|ZP_03698313.1| peptide deformylase [Pseudogulbenkiania ferrooxidans 2002]
gi|224602878|gb|EEG09055.1| peptide deformylase [Pseudogulbenkiania ferrooxidans 2002]
Length = 170
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 9/123 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQ+G+PLR+ + A+ G + A P V INPE++ D +
Sbjct: 46 GLAAPQIGVPLRVIVFAY--------GGGERDPGAPAIPPTVLINPEIR-PDAEHIEEDW 96
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
EGC S+ + +VPR++ ++ D G+ AEG+ ARIIQHE+DHL+G LF D +
Sbjct: 97 EGCFSVPGQRGRVPRWQAIRYRAQDIQGRLVEGRAEGFHARIIQHEVDHLNGTLFIDHLP 156
Query: 139 PKS 141
P +
Sbjct: 157 PGA 159
>gi|53712973|ref|YP_098965.1| peptide deformylase [Bacteroides fragilis YCH46]
gi|60681185|ref|YP_211329.1| peptide deformylase [Bacteroides fragilis NCTC 9343]
gi|265763070|ref|ZP_06091638.1| peptide deformylase [Bacteroides sp. 2_1_16]
gi|336409286|ref|ZP_08589773.1| peptide deformylase [Bacteroides sp. 2_1_56FAA]
gi|375357993|ref|YP_005110765.1| putative peptide deformylase [Bacteroides fragilis 638R]
gi|383117823|ref|ZP_09938566.1| peptide deformylase [Bacteroides sp. 3_2_5]
gi|423249620|ref|ZP_17230636.1| peptide deformylase [Bacteroides fragilis CL03T00C08]
gi|423256064|ref|ZP_17236992.1| peptide deformylase [Bacteroides fragilis CL03T12C07]
gi|423258040|ref|ZP_17238963.1| peptide deformylase [Bacteroides fragilis CL07T00C01]
gi|423264992|ref|ZP_17243995.1| peptide deformylase [Bacteroides fragilis CL07T12C05]
gi|423268435|ref|ZP_17247407.1| peptide deformylase [Bacteroides fragilis CL05T00C42]
gi|423274005|ref|ZP_17252952.1| peptide deformylase [Bacteroides fragilis CL05T12C13]
gi|81315745|sp|Q5LEQ9.1|DEF_BACFN RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|81690706|sp|Q64VP5.1|DEF_BACFR RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|52215838|dbj|BAD48431.1| peptide deformylase [Bacteroides fragilis YCH46]
gi|60492619|emb|CAH07391.1| putative peptide deformylase [Bacteroides fragilis NCTC 9343]
gi|251946825|gb|EES87107.1| peptide deformylase [Bacteroides sp. 3_2_5]
gi|263255678|gb|EEZ27024.1| peptide deformylase [Bacteroides sp. 2_1_16]
gi|301162674|emb|CBW22221.1| putative peptide deformylase [Bacteroides fragilis 638R]
gi|335947054|gb|EGN08849.1| peptide deformylase [Bacteroides sp. 2_1_56FAA]
gi|387777486|gb|EIK39583.1| peptide deformylase [Bacteroides fragilis CL07T00C01]
gi|392649624|gb|EIY43299.1| peptide deformylase [Bacteroides fragilis CL03T12C07]
gi|392655705|gb|EIY49347.1| peptide deformylase [Bacteroides fragilis CL03T00C08]
gi|392703719|gb|EIY96860.1| peptide deformylase [Bacteroides fragilis CL05T00C42]
gi|392704725|gb|EIY97860.1| peptide deformylase [Bacteroides fragilis CL07T12C05]
gi|392707438|gb|EIZ00557.1| peptide deformylase [Bacteroides fragilis CL05T12C13]
Length = 184
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M D GL+APQ+GLP+R+ ++ E + E D +K
Sbjct: 27 LKELIENMFETMDHADGVGLAAPQIGLPIRVVVINLDVLSEDYPEYKDFRK--------- 77
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+IN + +++ ++V+ EGC SL + V R K+ + +DE + EG+ AR
Sbjct: 78 AYINAHIDVVE-GEEVSMEEGCLSLPGIHESVKRGSKIHVRYMDENFVEHNEVVEGFLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHLDG +F D + P
Sbjct: 137 VMQHEFDHLDGKMFIDHISP 156
>gi|410944664|ref|ZP_11376405.1| polypeptide deformylase [Gluconobacter frateurii NBRC 101659]
Length = 170
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 65/116 (56%), Gaps = 11/116 (9%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQV +PLR+F+ P S E QA V INPE I+ D++
Sbjct: 47 GLAAPQVHVPLRVFVYHVPANRVSDPE--------QAMLPRVLINPE--IIPVGDEMMVC 96
Query: 79 -EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLF 133
EGC S+ L+ VPRY KV+ GLDE G A G+ A ++QHE DHL+G+L+
Sbjct: 97 SEGCLSIPGLRGDVPRYAKVRYRGLDENGDSVDGEAVGFHANVLQHENDHLNGVLY 152
>gi|421155382|ref|ZP_15614859.1| peptide deformylase [Pseudomonas aeruginosa ATCC 14886]
gi|404520524|gb|EKA31191.1| peptide deformylase [Pseudomonas aeruginosa ATCC 14886]
Length = 179
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ L+L I F E + + A P +
Sbjct: 30 LQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIFGFERSE--------RYPDAPAVPPTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + +LD + EGC S+ L+ V R+R+++ GLD G+P + EG+ AR+
Sbjct: 82 LLNPRITLLD-DEMEEGWEGCLSVPGLRGAVSRHRRIRYQGLDPQGQPIDRSVEGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLSGRLY 153
>gi|189184237|ref|YP_001938022.1| peptide deformylase [Orientia tsutsugamushi str. Ikeda]
gi|238692021|sp|B3CTU1.1|DEF_ORITI RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|189181008|dbj|BAG40788.1| methionyl-tRNA deformylase [Orientia tsutsugamushi str. Ikeda]
Length = 181
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQV + R+ ++ + E +I E + +P + +NP +K + TA
Sbjct: 45 VGLAAPQVAVSKRIIVLDLSKVD--IKEDNITNSEYK-YP-LFMVNPIVKAIS-NQTATA 99
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC SL +V RY ++Q+T LD K + AEGW AR IQHE+DHLDG+L D
Sbjct: 100 KEGCLSLPKQAIEVSRYHEIQVTYLDYYNKLTTLNAEGWLARAIQHEVDHLDGILLVD 157
>gi|302338169|ref|YP_003803375.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
gi|301635354|gb|ADK80781.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
Length = 161
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 68/126 (53%), Gaps = 18/126 (14%)
Query: 12 MKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDY 71
M D GL+APQ+G+ RLF+ GD+ + V+INPE+ I
Sbjct: 36 MHEDDGVGLAAPQIGVLKRLFV--------CHVRGDVPR---------VFINPEI-IGTS 77
Query: 72 KDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGL 131
+++V EGC S+ + A V R +Q+ +DE GK AEG AR+IQHEMDHL G+
Sbjct: 78 QEQVRYEEGCLSIPGIYADVLRPESIQVQAIDENGKAFKLAAEGLLARVIQHEMDHLKGV 137
Query: 132 LFTDSM 137
LF D +
Sbjct: 138 LFIDHL 143
>gi|320169511|gb|EFW46410.1| polypeptide deformylase [Capsaspora owczarzaki ATCC 30864]
Length = 196
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 2/142 (1%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIK-KFEMQAFPHMV 60
+ +I +M M+R + G++A Q+G + + F + + ++ +M+A P V
Sbjct: 47 QALIDRMIATMRRTEGVGIAAVQLGDNRAIACIEFTAKHLAEATPEMAATHKMEAVPLTV 106
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + + D V EGC S+ +QA V R R V + LD G P + GW+ARI
Sbjct: 107 MVNPRV-LRASSDLVEGAEGCLSVPGMQAIVFRPRHVAIDCLDRNGAPQTLKLSGWSARI 165
Query: 121 IQHEMDHLDGLLFTDSMLPKSL 142
HE+DHL G LFTD M KSL
Sbjct: 166 AMHEVDHLKGELFTDKMERKSL 187
>gi|412985711|emb|CCO19157.1| peptide deformylase [Bathycoccus prasinos]
Length = 260
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 75/132 (56%), Gaps = 8/132 (6%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQA---FPHMVWINPEMKILDYKDK 74
GL+APQ+G+ R+F+ D EE S+ ++ E + F V INP + + D
Sbjct: 77 VGLAAPQIGVKKRIFV--MEDTEEGMSDESEEERERKKRYPFKAKVVINPVL--IPIGDA 132
Query: 75 VTA-LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLF 133
A +EGC S++ +A V R+ KV+L G+ GKP GW ARI QHEMDHL+G+L+
Sbjct: 133 SAAFMEGCLSVQGYRALVRRHLKVKLKGVAPDGKPIDVDLTGWPARIAQHEMDHLNGVLY 192
Query: 134 TDSMLPKSLECV 145
D M ++L V
Sbjct: 193 VDRMEKRTLRRV 204
>gi|423279228|ref|ZP_17258141.1| peptide deformylase [Bacteroides fragilis HMW 610]
gi|404585397|gb|EKA90013.1| peptide deformylase [Bacteroides fragilis HMW 610]
Length = 184
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M D GL+APQ+GLP+R+ ++ E + E D +K
Sbjct: 27 LKELIENMFETMDHADGVGLAAPQIGLPVRVVVINLDVLSEDYPEYKDFRK--------- 77
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+IN + +++ ++V+ EGC SL + V R K+ + +DE + EG+ AR
Sbjct: 78 AYINAHIDVVE-GEEVSMEEGCLSLPGIHESVKRGSKIHVRYMDENFVEHNEVVEGFLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHLDG +F D + P
Sbjct: 137 VMQHEFDHLDGKMFIDHISP 156
>gi|225010669|ref|ZP_03701139.1| peptide deformylase [Flavobacteria bacterium MS024-3C]
gi|225005222|gb|EEG43174.1| peptide deformylase [Flavobacteria bacterium MS024-3C]
Length = 196
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 12/150 (8%)
Query: 19 GLSAPQVGLPLRLFIV---AFPDPEE-SFSEGD-IKKFEMQAFPHMVWINPEMKILDYKD 73
GL+APQ+GLP+RLF++ F D E+ + SE D +K F+ V+IN + + +
Sbjct: 45 GLAAPQIGLPIRLFVIDATPFADDEDLTQSEQDALKNFKA------VFINATI-TEETGE 97
Query: 74 KVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLF 133
+ T EGC S+ ++ V R K+ +T DET K + T +G AR+IQHE DH++G+LF
Sbjct: 98 EWTFNEGCLSIPDVREDVIRKPKITITYQDETFKTHTKTFDGLVARVIQHEYDHIEGILF 157
Query: 134 TDSMLPKSLECVCWQDINLQNGLLELRYYM 163
TD + + + N+ G + Y M
Sbjct: 158 TDKLSSLKKRILKGRLSNISKGKISAEYRM 187
>gi|118443183|ref|YP_878318.1| peptide deformylase [Clostridium novyi NT]
gi|118133639|gb|ABK60683.1| peptide deformylase [Clostridium novyi NT]
Length = 150
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 68/140 (48%), Gaps = 20/140 (14%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I MK M D GL+APQVG+ RL ++ EG I IN
Sbjct: 31 LIEDMKETMYEADGVGLAAPQVGILKRLVVI-------DVGEGPI-----------TLIN 72
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE I++ + T EGC SL Q KV R KV L+E G+P EG AR I H
Sbjct: 73 PE--IIESEGSQTDYEGCLSLPGKQGKVTRPYKVTAKALNEKGEPVEIKGEGLLARAICH 130
Query: 124 EMDHLDGLLFTDSMLPKSLE 143
E+DHLDG LF D ++ + E
Sbjct: 131 ELDHLDGTLFIDKVIEERGE 150
>gi|297568346|ref|YP_003689690.1| peptide deformylase [Desulfurivibrio alkaliphilus AHT2]
gi|296924261|gb|ADH85071.1| peptide deformylase [Desulfurivibrio alkaliphilus AHT2]
Length = 200
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 18/155 (11%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVA----------------FPDPEESFS 44
++ + L M M GL+APQ+G+PLR+ ++A + E+
Sbjct: 28 LRRLALDMIETMHAAPGVGLAAPQIGVPLRVVVIAGRVTLDEEQRAALAQEHGEAGEAAP 87
Query: 45 EGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDE 104
E + P +V INPE I++ + + EGC S++ V R+ ++++ D
Sbjct: 88 SPPSPPSEEELAPSLVLINPE--IVEAEGQQVDEEGCLSVREYATNVKRFARIRVKAQDL 145
Query: 105 TGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLP 139
+G+P + AE + AR+IQHE+DHLDG LF D + P
Sbjct: 146 SGQPLDFVAEDFFARVIQHELDHLDGTLFIDRISP 180
>gi|329120996|ref|ZP_08249627.1| peptide deformylase [Dialister micraerophilus DSM 19965]
gi|327471158|gb|EGF16612.1| peptide deformylase [Dialister micraerophilus DSM 19965]
Length = 153
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
MK +I MK M + GL+APQ+GL R+F+ D E F V
Sbjct: 30 MKHLIADMKKTMYAENGVGLAAPQIGLSKRIFV---ADCNEGFD---------------V 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INPE + LD KV EGC S+ L +V RY V + D GK A G AR
Sbjct: 72 YINPEWEPLD-DSKVIETEGCLSVSDLYGEVERYAHVIVKYQDIRGKRKQKKATGLFARC 130
Query: 121 IQHEMDHLDGLLFTDSML 138
+QHE+DHL+G LF D +
Sbjct: 131 VQHEIDHLNGTLFIDKAI 148
>gi|269955472|ref|YP_003325261.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
gi|269304153|gb|ACZ29703.1| Peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
Length = 223
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M+ M GL+APQVG+ L L +V E+ +E D + E P + NP +
Sbjct: 62 MRRTMHAAPGVGLAAPQVGIGLALAVV-----EDRGNESDPR--ERTPLPFRLLANPAYE 114
Query: 68 ILDYKD------KVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
+ + +V EGC S+ A V R+ +V+LTG D G P GW ARII
Sbjct: 115 PVAEEGPSGTLRRVPFFEGCLSIDGWHALVARHHRVRLTGQDADGAPIDEVLTGWPARII 174
Query: 122 QHEMDHLDGLLFTDSMLPKSL 142
QHE DHL G L+ D +P+S
Sbjct: 175 QHETDHLRGELYLDHAVPRSF 195
>gi|261880357|ref|ZP_06006784.1| peptide deformylase [Prevotella bergensis DSM 17361]
gi|270332901|gb|EFA43687.1| peptide deformylase [Prevotella bergensis DSM 17361]
Length = 187
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 9/122 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYK-DKVTA 77
GL+APQ+G +R+ ++ +E + E F H +INP + +D K +KV+
Sbjct: 45 GLAAPQIGKSVRVVVINLDVLKEDYPE-------YADFRH-AYINPHIIEVDKKSEKVSM 96
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ L KV RY ++++ LDE +P EG+ AR++QHE DHL+G+++ D +
Sbjct: 97 EEGCLSVPGLSEKVVRYSRIRVQYLDEELQPHDEWVEGYLARVMQHEFDHLEGVMYVDRI 156
Query: 138 LP 139
P
Sbjct: 157 TP 158
>gi|340618879|ref|YP_004737332.1| formylmethionine deformylase [Zobellia galactanivorans]
gi|339733676|emb|CAZ97053.1| Formylmethionine deformylase [Zobellia galactanivorans]
Length = 196
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 6/165 (3%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFP--DPEESFSEGDIKKFEMQAFPH 58
+K ++ M M + GL+APQ+GLP+RLFIV +E SE + K ++ F
Sbjct: 27 LKELVENMWETMYNANGVGLAAPQIGLPIRLFIVDTTPFSKDEDLSEEEQK--QLNGFKK 84
Query: 59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
V+IN +++ + D+ EGC S+ + V R V ++ +DE K + T +G A
Sbjct: 85 -VFINAQIE-EETGDEWAFSEGCLSIPDIHEDVKRKDTVTISYVDENFKAHTETYDGLLA 142
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
R+IQHE DH++G+LFTD + + + N+ G + Y M
Sbjct: 143 RVIQHEYDHIEGILFTDKLSTLKKRMLKSKLTNISKGNIRADYRM 187
>gi|320451483|ref|YP_004203579.1| peptide deformylase [Thermus scotoductus SA-01]
gi|320151652|gb|ADW23030.1| peptide deformylase [Thermus scotoductus SA-01]
Length = 191
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 72/125 (57%), Gaps = 9/125 (7%)
Query: 19 GLSAPQVGLPLRLFI-VAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQ+GL R F+ V + D EG+ + A V NP I + +V
Sbjct: 44 GLAAPQIGLSQRFFVAVEYADE----PEGEERPLRDLARRIYVVANP--VITHREGEVEG 97
Query: 78 LEGCASLKSLQAK-VPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
LEGC SL L A+ VPR ++++ DE G+P + EG+ AR+ QHE+DHLDG+LF +
Sbjct: 98 LEGCLSLPGLYAEEVPRAERIRVEYQDEEGRPRALELEGYMARVFQHEIDHLDGILFFER 157
Query: 137 MLPKS 141
LPK+
Sbjct: 158 -LPKA 161
>gi|407775598|ref|ZP_11122891.1| peptide deformylase [Thalassospira profundimaris WP0211]
gi|407281275|gb|EKF06838.1| peptide deformylase [Thalassospira profundimaris WP0211]
Length = 194
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 7/139 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I MK+ MK GL+APQV L + + P +S D + P V IN
Sbjct: 32 LIADMKDTMKDAGGVGLAAPQVFQSLAIMVYYVPALRKSNDPDDGE------VPLSVLIN 85
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE++ + + V EGC S+ LQ VPR+ K++ GL+E G+ TA G+ AR++QH
Sbjct: 86 PEIEPIG-DEIVDGWEGCLSIPGLQGVVPRWNKIRYRGLNEKGEAVEHTAGGFHARVVQH 144
Query: 124 EMDHLDGLLFTDSMLPKSL 142
E DHL G+++ + M SL
Sbjct: 145 EYDHLIGVMYPERMEDMSL 163
>gi|300774181|ref|ZP_07084049.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861]
gi|300758992|gb|EFK55820.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861]
Length = 192
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHM 59
+K +I M + M GL+APQ+GLP+R+F++ A P E+ + +K F+
Sbjct: 27 IKELIANMYDTMYAAHGVGLAAPQIGLPIRVFVIDASPFAEDDDEDKSLKDFKK------ 80
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V+INP + + + +K EGC S+ + +V R V + LDE + G AAR
Sbjct: 81 VFINP-IIVEETGEKWGFNEGCLSIPDINEEVFRPANVVINYLDENFEEHEIELSGLAAR 139
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYMS 164
I+QHE DHL+G LFTD + P + + + GL+ + Y M
Sbjct: 140 IVQHEYDHLEGKLFTDKLGPLKKAMLKGKLDAISKGLIRVGYKMK 184
>gi|58038609|ref|YP_190573.1| polypeptide deformylase [Gluconobacter oxydans 621H]
gi|58001023|gb|AAW59917.1| Polypeptide deformylase [Gluconobacter oxydans 621H]
Length = 170
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 19/138 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFP-----DPEESFSEGDIKKFEMQA 55
++ +I M M GL+APQV PLR+F+ P +PEE+
Sbjct: 29 IQSLIADMLETMADARGAGLAAPQVHQPLRIFVYHVPTNRVANPEEAL------------ 76
Query: 56 FPHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEG 115
P V INPE+ + + V + EGC S+ L+A VPR+ KV+ +GLDE G A G
Sbjct: 77 LPR-VLINPEITPVGDEMMVCS-EGCLSIPGLRADVPRHAKVRYSGLDENGAVLEGEATG 134
Query: 116 WAARIIQHEMDHLDGLLF 133
+ A ++QHE DHL+G+L+
Sbjct: 135 FHANVLQHENDHLNGILY 152
>gi|341583308|ref|YP_004763799.1| peptide deformylase [Rickettsia heilongjiangensis 054]
gi|340807534|gb|AEK74122.1| peptide deformylase [Rickettsia heilongjiangensis 054]
Length = 224
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 10/127 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFE---MQAFPHMVWINPEMKILDYKDKV 75
GL+APQ+G+ + I A + + ++KK+ P +WINP K + DK
Sbjct: 84 GLAAPQIGISKCIIIFAVHE------DAELKKWRPDLKDTMPKTIWINPSYKPIGI-DKH 136
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S++S V R++K+ D G AEG+ AR+IQHE+DHL+G +F D
Sbjct: 137 EDYEGCFSVESATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLD 196
Query: 136 SMLPKSL 142
+ PK +
Sbjct: 197 YVAPKKI 203
>gi|452825653|gb|EME32648.1| peptide deformylase [Galdieria sulphuraria]
Length = 269
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
I +M VM GL+APQVG+ RL + SF +V +N
Sbjct: 122 IARKMFQVMYADRGVGLAAPQVGINQRLMVYNPTGKPSSF------------LSQVVMVN 169
Query: 64 PEMKILDYKDK-VTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
P KI+D DK V LEGC S + KV R+ V++ GK EGW ARI Q
Sbjct: 170 P--KIVDCSDKKVVDLEGCLSFPGIAGKVSRHEWVRVEAFKPGGKKIKLKLEGWQARIFQ 227
Query: 123 HEMDHLDGLLFTDSMLPK 140
HE DHLDG+LF D M P+
Sbjct: 228 HEYDHLDGILFIDRMEPE 245
>gi|154252515|ref|YP_001413339.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
gi|154156465|gb|ABS63682.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
Length = 207
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 76/139 (54%), Gaps = 6/139 (4%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEG--DIKKFEMQAFPH 58
+K ++ M M + GL+APQV P R IV F PE EG + + F+ A P
Sbjct: 29 VKALVRDMIETMIDANGAGLAAPQVYEPWR--IVVFQAPESRLPEGVDETEAFDHTA-PL 85
Query: 59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
V INPE++IL ++ EGC S+ L+ VPR+ +++ G G+ A G+ A
Sbjct: 86 TVLINPEVEILT-EEMEKGWEGCLSVPGLRGSVPRHTELRYRGYGLNGELIERRARGFHA 144
Query: 119 RIIQHEMDHLDGLLFTDSM 137
R+IQHE DHLDG+L+ M
Sbjct: 145 RVIQHECDHLDGILYPQRM 163
>gi|290955665|ref|YP_003486847.1| polypeptide deformylase [Streptomyces scabiei 87.22]
gi|260645191|emb|CBG68277.1| polypeptide deformylase [Streptomyces scabiei 87.22]
Length = 218
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 5 ILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMVW 61
+ ++ M GL+APQVG+ LR+ ++ P P E + G + + P V
Sbjct: 57 VAALRATMHAAPGVGLAAPQVGVSLRIAVIEDPAPVPEEVRLARGRVPQ------PFRVL 110
Query: 62 INPEMKILD-YKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + + ++D EGC S+ QA V R+ +V+L LDE G+ GW ARI
Sbjct: 111 VNPAYEAVGPFRDAF--FEGCLSVPGWQAVVARHARVRLRALDERGRAVDEEFSGWPARI 168
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECV-----CWQDINLQNGLLELRYYM 163
+QHE DHL+G L+ D +SL W D EL + +
Sbjct: 169 VQHETDHLNGTLYLDHAELRSLSSNQAMADRWNDPTPARAARELGFLL 216
>gi|423285076|ref|ZP_17263959.1| peptide deformylase [Bacteroides fragilis HMW 615]
gi|404579665|gb|EKA84379.1| peptide deformylase [Bacteroides fragilis HMW 615]
Length = 184
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M D GL+APQ+GLP+R+ ++ E + E D +K
Sbjct: 27 LKELIENMFETMDHADGVGLAAPQIGLPIRVVVINLDVLSEDYPEYKDFRK--------- 77
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+IN + +++ ++V+ EGC SL + V R K+ + +DE + EG+ AR
Sbjct: 78 AYINAHIDVVE-GEEVSMEEGCLSLPGIHESVKRGSKIHVRYMDENFVEHNEVIEGFLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHLDG +F D + P
Sbjct: 137 VMQHEFDHLDGKMFIDHISP 156
>gi|302529604|ref|ZP_07281946.1| polypeptide deformylase [Streptomyces sp. AA4]
gi|302438499|gb|EFL10315.1| polypeptide deformylase [Streptomyces sp. AA4]
Length = 218
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEE-SFSEGDIKKFEMQAFPHM 59
+ +I MK M GL+APQ+GL +R+ +V E +E + + P
Sbjct: 50 LSALIEGMKETMHAAPGVGLAAPQIGLSVRIAVVEDGARERPGVAESTLATRGIVPLPFR 109
Query: 60 VWINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
V +NP + D+ A EGC S++ QA V R +++L G DETG GW A
Sbjct: 110 VLVNPTYTRVG--DETAAFFEGCLSVRGWQAVVARALRIRLRGSDETGASLDEELSGWPA 167
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLEC 144
RI+QHE DHL G+L+ D +SL
Sbjct: 168 RIVQHETDHLHGVLYLDRAELRSLST 193
>gi|281420284|ref|ZP_06251283.1| peptide deformylase [Prevotella copri DSM 18205]
gi|281405586|gb|EFB36266.1| peptide deformylase [Prevotella copri DSM 18205]
Length = 185
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 10/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K++I M + + GL+APQ+GLP+RL ++ E F E + F H
Sbjct: 27 LKVLINNMYETLDSSNGIGLAAPQIGLPIRLVVIDLDVLSEDFPE-------YKGFRH-A 78
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDET-GKPDSWTAEGWAAR 119
+IN + D ++ ++ EGC S+ + KV R ++ + +DE + D W EG+ AR
Sbjct: 79 FINAHILERDEENTDSSEEGCLSIPGINEKVVRPTRIHVKYMDEDFNEHDEWI-EGYLAR 137
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHL+G +F D + P
Sbjct: 138 VMQHEFDHLEGTMFVDRVSP 157
>gi|148285009|ref|YP_001249099.1| peptide deformylase [Orientia tsutsugamushi str. Boryong]
gi|158514262|sp|A5CF65.1|DEF_ORITB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|146740448|emb|CAM80944.1| polypeptide deformylase [Orientia tsutsugamushi str. Boryong]
Length = 181
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQV + R+ ++ + E +I E + +P + +NP +K + VTA
Sbjct: 45 VGLAAPQVAVSKRIIVLDLSKVD--IEEDNITNSEYK-YP-LFMVNPIVKAIS-NQTVTA 99
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC SL +V RY ++Q+T LD K + A GW AR IQHE+DHLDG+L D
Sbjct: 100 KEGCLSLPKQAIEVSRYHEIQVTYLDYYNKLKTLNAAGWLARAIQHEVDHLDGILLVD 157
>gi|297538577|ref|YP_003674346.1| peptide deformylase [Methylotenera versatilis 301]
gi|297257924|gb|ADI29769.1| peptide deformylase [Methylotenera versatilis 301]
Length = 182
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
+I +++ M+ + G++APQ+G LR+ I ++S E ++ + A P+ V I
Sbjct: 32 LIQDLEDTMQAMNGAGIAAPQIGESLRVVIFG----QKSSDENKNPRYPDADAVPYTVLI 87
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP + + D EGC S+ ++ VPRY ++ G D+ G P G+ AR++Q
Sbjct: 88 NPVITPIG-DDVEDGWEGCLSVPGMRGIVPRYLRLHYAGFDQYGNPIDRLVSGFHARVVQ 146
Query: 123 HEMDHLDGLLF 133
HE DHLDG+L+
Sbjct: 147 HECDHLDGVLY 157
>gi|94986391|ref|YP_605755.1| peptide deformylase [Deinococcus geothermalis DSM 11300]
gi|94556672|gb|ABF46586.1| Peptide deformylase [Deinococcus geothermalis DSM 11300]
Length = 216
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQVGLP+R+F+ + +E EG + + V +NP + ++D K +
Sbjct: 59 GLAAPQVGLPVRMFVAVEYEDDEEEQEGRDVPLKSRVLREFVMLNPVLTVIDKKKDRSYQ 118
Query: 79 EGCASLKSL-QAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + + V R R VQ+ D G+ + A+ + AR+ QHE DHLDG+ F D +
Sbjct: 119 EGCLSIPGIYEEGVARARAVQVRYTDLDGQERTLEADDYLARVFQHETDHLDGVFFLDRL 178
Query: 138 LPKSLE 143
P+ E
Sbjct: 179 PPEVTE 184
>gi|365122897|ref|ZP_09339790.1| peptide deformylase [Tannerella sp. 6_1_58FAA_CT1]
gi|363641105|gb|EHL80512.1| peptide deformylase [Tannerella sp. 6_1_58FAA_CT1]
Length = 185
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M + D GL+APQ+GL +R+ ++ E+F E D +K + A H+
Sbjct: 27 LKKLIEDMFETMDKSDGVGLAAPQIGLDIRVLVINLDALSETFPEYKDYRKAMINA--HI 84
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
++ DK+T EGC SL + V R K+++T D+ + EG+ AR
Sbjct: 85 EEVS--------GDKITREEGCLSLPGIHEPVTRQEKIKITYRDQDFVEHTEVFEGYVAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
+IQHE DHL+G +F D + P
Sbjct: 137 VIQHEYDHLEGKMFIDHLSP 156
>gi|29345830|ref|NP_809333.1| peptide deformylase [Bacteroides thetaiotaomicron VPI-5482]
gi|298384715|ref|ZP_06994275.1| peptide deformylase [Bacteroides sp. 1_1_14]
gi|383123018|ref|ZP_09943704.1| peptide deformylase [Bacteroides sp. 1_1_6]
gi|39930885|sp|Q8AAP4.1|DEF_BACTN RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|29337723|gb|AAO75527.1| peptide deformylase(PDF) [Bacteroides thetaiotaomicron VPI-5482]
gi|251841889|gb|EES69969.1| peptide deformylase [Bacteroides sp. 1_1_6]
gi|298262994|gb|EFI05858.1| peptide deformylase [Bacteroides sp. 1_1_14]
Length = 184
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 13/141 (9%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAF--PH 58
+K +I M M D GL+APQ+GLP+R+ + E + E K F +A+ PH
Sbjct: 27 LKELIANMFETMVHADGVGLAAPQIGLPIRVVTITLDPLSEDYPE--FKDFN-KAYINPH 83
Query: 59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
++ + E +V+ EGC SL + V R K+++ +DE EG+ A
Sbjct: 84 IIEVGGE--------EVSMEEGCLSLPGIHESVKRGNKIRVKYMDENFVEHDEVVEGYLA 135
Query: 119 RIIQHEMDHLDGLLFTDSMLP 139
R++QHE DHLDG +F D + P
Sbjct: 136 RVMQHEFDHLDGKMFIDHLSP 156
>gi|374263599|ref|ZP_09622147.1| hypothetical protein LDG_8600 [Legionella drancourtii LLAP12]
gi|363536189|gb|EHL29635.1| hypothetical protein LDG_8600 [Legionella drancourtii LLAP12]
Length = 179
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I MK+ M G++APQ+G R+ + F E + + + P + IN
Sbjct: 37 LIQNMKDTMDAKGGVGIAAPQIGYNKRVIMFGF--------EKNKRYPNEKPVPFTILIN 88
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P +I+ + V EGC S+ L+ VPRY+K++ +G D GK + A + ARIIQH
Sbjct: 89 PIYQIMS-DELVEEWEGCLSVPGLRGLVPRYKKIEYSGYDPEGKLITRVAADFHARIIQH 147
Query: 124 EMDHLDGLLF 133
E DHLDG+LF
Sbjct: 148 ECDHLDGVLF 157
>gi|347539375|ref|YP_004846800.1| peptide deformylase [Pseudogulbenkiania sp. NH8B]
gi|345642553|dbj|BAK76386.1| peptide deformylase [Pseudogulbenkiania sp. NH8B]
Length = 170
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 9/123 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQ+G+PLR+ + A+ G + A P V INPE+ D +
Sbjct: 46 GLAAPQIGVPLRVIVFAY--------GGGERDPGAPAIPPTVLINPEIH-PDTERVEEDW 96
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
EGC S+ + +VPR++ ++ D G+ AEG+ ARIIQHE+DHL+G LF D +
Sbjct: 97 EGCFSVPGQRGRVPRWQAIRYRAQDIQGRLVEGRAEGFHARIIQHEVDHLNGTLFIDHLP 156
Query: 139 PKS 141
P +
Sbjct: 157 PGA 159
>gi|270157701|ref|ZP_06186358.1| peptide deformylase [Legionella longbeachae D-4968]
gi|269989726|gb|EEZ95980.1| peptide deformylase [Legionella longbeachae D-4968]
Length = 172
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 11/138 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQ-AFPHM 59
+K ++ M ++M G++APQ+G+ R+ + F K+ + + P
Sbjct: 29 LKSLVQTMIDIMAEKAAVGVAAPQIGVSKRVIV---------FGTSYTKRRQPEYPIPDT 79
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
INP +K+L + + T EGC + + +VPR +++ +G D G P + A G AR
Sbjct: 80 ALINPTLKVLSEEIQ-TDYEGCLNCDDIMGEVPRAMEIEYSGFDIEGNPVTKRARGLEAR 138
Query: 120 IIQHEMDHLDGLLFTDSM 137
I+QHE+DHLDG+LF D +
Sbjct: 139 ILQHEIDHLDGILFIDRI 156
>gi|284989160|ref|YP_003407714.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
gi|284062405|gb|ADB73343.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
Length = 185
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 18/146 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++L M M+ D GL+A Q+G+ R+F++ PD + D+ +
Sbjct: 37 LRRLVLDMFASMEAADGVGLAANQIGVDARVFVIDCPDADGE----DVVGY--------- 83
Query: 61 WINPEMKILDYKDKVTALE----GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
+NPE+ +L+ ++ A E GC S+ A++PR + ++ G+D G P S A G
Sbjct: 84 VVNPELTVLEPREGEPAEEVTDEGCLSVPGPYAELPRAFRARVDGVDADGAPVSIEATGM 143
Query: 117 AARIIQHEMDHLDGLLFTDSMLPKSL 142
AAR +QHE+DHLDG ++ D LP L
Sbjct: 144 AARCLQHEVDHLDGTVYVDR-LPGDL 168
>gi|152981418|ref|YP_001353753.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp.
Marseille]
gi|151281495|gb|ABR89905.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp.
Marseille]
Length = 178
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M + GL+APQ+G+ LRL I F + + + + P V
Sbjct: 29 LDALIEDMFDTMHAANGAGLAAPQIGVNLRLVIYGF--------KQNTRYPDAPPVPETV 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP+++ L + EGC S+ L+ VPR+ + G D+ G S A+G+ AR+
Sbjct: 81 LINPKLRPLS-AEMEDGWEGCLSVPGLRGVVPRFSALHYDGFDQYGNVISRDADGFHARV 139
Query: 121 IQHEMDHLDGLLF 133
+QHE DHLDG+L+
Sbjct: 140 VQHECDHLDGILY 152
>gi|159463814|ref|XP_001690137.1| peptide deformylase [Chlamydomonas reinhardtii]
gi|158284125|gb|EDP09875.1| peptide deformylase [Chlamydomonas reinhardtii]
Length = 248
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 75/152 (49%), Gaps = 15/152 (9%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
+M +M + D GL+APQVG+ +RL + +P G+ + +NPE+
Sbjct: 86 EMIEIMYQDDGVGLAAPQVGVNVRLMVF---NPMGRDKPGN----------ESILVNPEI 132
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWT-AEGWAARIIQHEM 125
+ K EGC S + V R R++ + LD TG+P T + W ARI QHE
Sbjct: 133 -VEQLGGKELGEEGCLSFPRIYGDVERSRQINVKALDATGQPVKLTLTDPWVARIFQHEF 191
Query: 126 DHLDGLLFTDSMLPKSLECVCWQDINLQNGLL 157
DHL G+LF D M P LE V + + L+ L
Sbjct: 192 DHLQGVLFHDRMKPSVLETVRPELVALEEAFL 223
>gi|170723021|ref|YP_001750709.1| peptide deformylase [Pseudomonas putida W619]
gi|169761024|gb|ACA74340.1| peptide deformylase [Pseudomonas putida W619]
Length = 178
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M+ GL+APQVG+ L+L I F E + + +A P +
Sbjct: 30 LQQLIDDMFETMRHVGGVGLAAPQVGIDLQLVIFGFERSE--------RYPDAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L + + EGC S+ L+ VPRY+ + G+D G P + A+G+ AR+
Sbjct: 82 LLNPVITPLSTEIE-EGWEGCLSVPGLRGVVPRYKHISYEGIDPQGNPVNRVADGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|399924365|ref|ZP_10781723.1| peptide deformylase [Peptoniphilus rhinitidis 1-13]
Length = 159
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 16/120 (13%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQVG+ RL +V D EE+ K+F M +NP IL+ + + ++
Sbjct: 46 GLAAPQVGILKRLIVVDNRDEEEN------KRFYM--------LNP--VILEKEGEEISM 89
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
EGC S+ Q V R + +++ D TG+ AE + ARIIQHEMDHLDG+L+TD +
Sbjct: 90 EGCLSIPGKQGTVKRAKNIKVKYNDLTGEEKIMEAEDFLARIIQHEMDHLDGILYTDKAI 149
>gi|241662938|ref|YP_002981298.1| peptide deformylase [Ralstonia pickettii 12D]
gi|240864965|gb|ACS62626.1| peptide deformylase [Ralstonia pickettii 12D]
Length = 177
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M GL+APQ+G+ L++ I F D + + + A P V
Sbjct: 28 LTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGF-DRNDRYPDA-------PAVPKTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ L D EGC S+ L+ VPRY +++ TG D+ G AEG+ AR+
Sbjct: 80 LINPTIEPLS-NDMEEGWEGCLSVPGLRGVVPRYTRLRYTGFDQHGHAIDRIAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 139 VQHECDHLQGVLY 151
>gi|294632567|ref|ZP_06711127.1| peptide deformylase [Streptomyces sp. e14]
gi|292835900|gb|EFF94249.1| peptide deformylase [Streptomyces sp. e14]
Length = 215
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 4/138 (2%)
Query: 5 ILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINP 64
+ ++ M+ GL+A QVG+ LR+ ++ DP E + + E P V +NP
Sbjct: 54 VQALRVTMRTAPGVGLAAVQVGVGLRIAVIE--DPAPVPEEVRVAR-ERVPQPFRVLVNP 110
Query: 65 EMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHE 124
+ + + + EGC S+ QA V R+ +V+L DE G+ GW ARI+QHE
Sbjct: 111 SYEPVGAR-RAAFFEGCLSVPGWQAVVARHAEVRLRARDEHGRAVDEVFTGWPARIVQHE 169
Query: 125 MDHLDGLLFTDSMLPKSL 142
DHLDG+L+ D P+SL
Sbjct: 170 TDHLDGVLYVDRAEPRSL 187
>gi|406975169|gb|EKD98015.1| hypothetical protein ACD_23C00625G0007 [uncultured bacterium]
Length = 179
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 8/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +++ M M+ GL+APQ+G+ L++ I P + E + P V
Sbjct: 29 LHLLVRDMFETMQSVHGAGLAAPQIGVDLQVVIFGSGTPNPRYPERPL-------VPPTV 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L +++ EGC S+ L+ KVPR+ +++ TG D G P TAEG+ AR+
Sbjct: 82 LVNPVITPLGEQEE-EDWEGCLSVPGLRGKVPRWLRIRYTGFDPYGDPIDRTAEGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGKLY 153
>gi|379734047|ref|YP_005327552.1| peptide deformylase [Blastococcus saxobsidens DD2]
gi|378781853|emb|CCG01504.1| Peptide deformylase [Blastococcus saxobsidens DD2]
Length = 185
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 81/145 (55%), Gaps = 20/145 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++L M M+ D GL+A Q+G+ R+F++ PD E + D+ +
Sbjct: 37 LRRLVLDMFASMEAADGVGLAANQIGVDARVFVIDCPDAEGA----DVVGY--------- 83
Query: 61 WINPEMKILDY-----KDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEG 115
+NP + +LD ++VT EGC S+ A++PR + ++ G+D G P S A G
Sbjct: 84 VVNPSLTVLDPVGEDPAEEVTE-EGCLSVPGPYAELPRAFRARVDGVDLHGDPVSIEATG 142
Query: 116 WAARIIQHEMDHLDGLLFTDSMLPK 140
AAR +QHE+DHLDG ++ D +LP+
Sbjct: 143 MAARCLQHEVDHLDGTVYVD-LLPE 166
>gi|288801322|ref|ZP_06406776.1| peptide deformylase [Prevotella sp. oral taxon 299 str. F0039]
gi|288331705|gb|EFC70189.1| peptide deformylase [Prevotella sp. oral taxon 299 str. F0039]
Length = 187
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 13/142 (9%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAF--PH 58
+K +I M M D GL+APQ+G +RL ++ E + E K F +AF PH
Sbjct: 27 LKELIANMFETMDNADGIGLAAPQIGRSIRLSVIDLDVLSEYYPE--YKGFR-KAFINPH 83
Query: 59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDET-GKPDSWTAEGWA 117
++ ++ E ++L T+ EGC S+ + V R ++ + +DE + D W EG+
Sbjct: 84 ILEVDEESEML------TSEEGCLSIPGIHENVDRRTRIHVKWMDEEFTEHDEWI-EGYL 136
Query: 118 ARIIQHEMDHLDGLLFTDSMLP 139
AR++QHE DHLDG+LFTD + P
Sbjct: 137 ARVMQHEFDHLDGVLFTDRISP 158
>gi|440697053|ref|ZP_20879494.1| peptide deformylase [Streptomyces turgidiscabies Car8]
gi|440280668|gb|ELP68371.1| peptide deformylase [Streptomyces turgidiscabies Car8]
Length = 213
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 69/140 (49%), Gaps = 10/140 (7%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMVWINP 64
++ M GL+APQVG+ LR+ ++ P P E G + P V +NP
Sbjct: 57 LRETMYAAPGVGLAAPQVGVGLRIAVIEDPAPVPEEVRVVRGRVP------LPFRVLVNP 110
Query: 65 EMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHE 124
+ + ++ EGC S+ QA V R V+LTG DE G+ GW ARI+QHE
Sbjct: 111 SYEAVG-TERAAFFEGCLSVPGWQAVVSRPAAVRLTGQDEYGRAVDEVFTGWPARIVQHE 169
Query: 125 MDHLDGLLFTDSMLPKSLEC 144
DHLDG L+ D +SL
Sbjct: 170 TDHLDGTLYLDRAELRSLSS 189
>gi|154490274|ref|ZP_02030535.1| hypothetical protein PARMER_00506 [Parabacteroides merdae ATCC
43184]
gi|423721805|ref|ZP_17695981.1| peptide deformylase [Parabacteroides merdae CL09T00C40]
gi|154089166|gb|EDN88210.1| peptide deformylase [Parabacteroides merdae ATCC 43184]
gi|409242818|gb|EKN35577.1| peptide deformylase [Parabacteroides merdae CL09T00C40]
Length = 185
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M M D GL+APQVGL LRL ++ + F E K F+
Sbjct: 27 LKQLVANMFETMYNADGVGLAAPQVGLSLRLLVIDADVMGDDFPE--CKGFKR------A 78
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + + +++V+ EGC SL + KV R KV++ LDE K T EG+AAR+
Sbjct: 79 MINP-VFLEKSEEEVSMEEGCLSLPGVHEKVARSAKVRVKYLDEDLKEHEETVEGFAARV 137
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHE +HL+G +F D++
Sbjct: 138 VQHECEHLEGHVFIDNI 154
>gi|302878431|ref|YP_003846995.1| peptide deformylase [Gallionella capsiferriformans ES-2]
gi|302581220|gb|ADL55231.1| peptide deformylase [Gallionella capsiferriformans ES-2]
Length = 175
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 75/135 (55%), Gaps = 13/135 (9%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M++ M + GL+APQ+G+ LR+ I E + + + ++ P+ V
Sbjct: 27 LQDVLNDMQDTMHALNGAGLAAPQIGVGLRVVIFGV--------EENSRYPDAESVPYTV 78
Query: 61 WINPEMKILD--YKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
INP + +D +D EGC S+ L+ +V RY ++ G+D G P + G+ A
Sbjct: 79 LINPVVTPIDDLMEDD---WEGCLSVPGLRGRVARYHAIRYQGVDAKGAPIDRSVSGFHA 135
Query: 119 RIIQHEMDHLDGLLF 133
R++QHE DHLDG+L+
Sbjct: 136 RVVQHECDHLDGVLY 150
>gi|445497588|ref|ZP_21464443.1| peptide deformylase 2 [Janthinobacterium sp. HH01]
gi|444787583|gb|ELX09131.1| peptide deformylase 2 [Janthinobacterium sp. HH01]
Length = 178
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
M+ +I M + M + GL+APQ+G+ L+L I F + + + + P V
Sbjct: 29 MRELIADMFDTMHAANGAGLAAPQIGVNLQLVIFGF--------KQNARYPDAPQVPETV 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L DK EGC S+ L+ VPR+ K++ G+D+ +P + +G+ AR+
Sbjct: 81 LINPVLTPLS-DDKEEGFEGCLSVPGLRGSVPRFVKLRYEGVDQFRQPIARDVDGFHARV 139
Query: 121 IQHEMDHLDGLLF 133
+QHE+DHL G+L+
Sbjct: 140 VQHEVDHLLGVLY 152
>gi|300704236|ref|YP_003745839.1| peptide deformylase [Ralstonia solanacearum CFBP2957]
gi|299071900|emb|CBJ43229.1| Peptide deformylase [Ralstonia solanacearum CFBP2957]
Length = 177
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M GL+APQ+G+ L++ I F D E + + A P V
Sbjct: 28 LTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGF-DRNERYPDA-------PAVPKTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ L + EGC S+ L+ VPRY +++ TG D+ G AEG+ AR+
Sbjct: 80 LINPTIEALS-DEMEDGWEGCLSVPGLRGVVPRYTRLRYTGFDQHGHAIDRIAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 139 VQHECDHLQGILY 151
>gi|421888324|ref|ZP_16319422.1| Peptide deformylase [Ralstonia solanacearum K60-1]
gi|378966273|emb|CCF96170.1| Peptide deformylase [Ralstonia solanacearum K60-1]
Length = 177
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M GL+APQ+G+ L++ I F D E + + A P V
Sbjct: 28 LTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGF-DRNERYPDA-------PAVPKTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ L + EGC S+ L+ VPRY +++ TG D+ G AEG+ AR+
Sbjct: 80 LINPTIEALS-DEMEDGWEGCLSVPGLRGVVPRYTRLRYTGFDQHGHAIDRIAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 139 VQHECDHLQGILY 151
>gi|452911474|ref|ZP_21960142.1| Peptide deformylase [Kocuria palustris PEL]
gi|452833402|gb|EME36215.1| Peptide deformylase [Kocuria palustris PEL]
Length = 190
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 17/141 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ LR+F F + +++ + G+I
Sbjct: 28 LRELIADMHETMDAAHGVGLAAPQIGVGLRIFTFVFDNDDDAPNRGEI------------ 75
Query: 61 WINPEM---KILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
INP + KI + + D EGC S+ + R V++ G D G+P +W A GW
Sbjct: 76 -INPVLTVGKISEQRPDPDEEAEGCLSVPGYSFPLKRAEWVRIAGFDPHGQPIAWEATGW 134
Query: 117 AARIIQHEMDHLDGLLFTDSM 137
AR++QHE DHLDG L+ D +
Sbjct: 135 FARVMQHEYDHLDGKLYVDRL 155
>gi|107100575|ref|ZP_01364493.1| hypothetical protein PaerPA_01001600 [Pseudomonas aeruginosa PACS2]
gi|254239493|ref|ZP_04932815.1| hypothetical protein PA2G_00106 [Pseudomonas aeruginosa 2192]
gi|386059971|ref|YP_005976493.1| peptide deformylase [Pseudomonas aeruginosa M18]
gi|420140886|ref|ZP_14648610.1| peptide deformylase [Pseudomonas aeruginosa CIG1]
gi|421162172|ref|ZP_15621056.1| peptide deformylase [Pseudomonas aeruginosa ATCC 25324]
gi|424940328|ref|ZP_18356091.1| probable peptide deformylase [Pseudomonas aeruginosa NCMG1179]
gi|451987225|ref|ZP_21935383.1| Peptide deformylase [Pseudomonas aeruginosa 18A]
gi|126192871|gb|EAZ56934.1| hypothetical protein PA2G_00106 [Pseudomonas aeruginosa 2192]
gi|346056774|dbj|GAA16657.1| probable peptide deformylase [Pseudomonas aeruginosa NCMG1179]
gi|347306277|gb|AEO76391.1| peptide deformylase [Pseudomonas aeruginosa M18]
gi|403246364|gb|EJY60096.1| peptide deformylase [Pseudomonas aeruginosa CIG1]
gi|404536827|gb|EKA46459.1| peptide deformylase [Pseudomonas aeruginosa ATCC 25324]
gi|451754843|emb|CCQ87906.1| Peptide deformylase [Pseudomonas aeruginosa 18A]
Length = 179
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ L+L I F E + + A P +
Sbjct: 30 LQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIFGFERSE--------RYPDAPAVPPTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + +LD + EGC S+ L+ V R+R+++ GLD G+P + EG+ AR+
Sbjct: 82 LLNPRITLLD-DEMEEGWEGCLSVPGLRGAVSRHRRIRYQGLDPQGQPIDRSVEGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|398834965|ref|ZP_10592359.1| peptide deformylase [Herbaspirillum sp. YR522]
gi|398219402|gb|EJN05883.1| peptide deformylase [Herbaspirillum sp. YR522]
Length = 178
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 11/134 (8%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHM 59
+ ++ M M+ + GL+APQ+G+ L+L I F G +++ E A P
Sbjct: 29 LTALVADMFETMRAVNGAGLAAPQIGVDLQLVIFGF---------GQNQRYPEAPAVPET 79
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V INP + L + + EGC S+ L+ VPR+ +++ G D G+P T +G+ AR
Sbjct: 80 VLINPRLTPLSDQQE-DGWEGCLSVPGLRGVVPRWTQLRYQGFDLDGEPIDRTVDGFHAR 138
Query: 120 IIQHEMDHLDGLLF 133
++QHE DHL G+L+
Sbjct: 139 VVQHECDHLAGILY 152
>gi|296133300|ref|YP_003640547.1| peptide deformylase [Thermincola potens JR]
gi|296031878|gb|ADG82646.1| peptide deformylase [Thermincola potens JR]
Length = 150
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 69/128 (53%), Gaps = 20/128 (15%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M + GL+APQ+G+ R+ +V D G I+ +NPE
Sbjct: 35 MADTMYDANGVGLAAPQIGVGKRVIVVDVGD-------GLIE-----------LVNPE-- 74
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
I+ + T +EGC S+ +Q +VPRY KV++ G++ G + AEG AR QHE+DH
Sbjct: 75 IVHREGSETDVEGCLSIPGIQGQVPRYAKVRVRGMNREGNRVEYEAEGLLARAFQHEIDH 134
Query: 128 LDGLLFTD 135
L+G+LF D
Sbjct: 135 LEGILFID 142
>gi|421897341|ref|ZP_16327709.1| probable polypeptide deformylase (partial sequence) protein,
partial [Ralstonia solanacearum MolK2]
gi|206588547|emb|CAQ35510.1| probable polypeptide deformylase (partial sequence) protein,
partial [Ralstonia solanacearum MolK2]
Length = 181
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M GL+APQ+G+ L++ I F D E + + A P V
Sbjct: 32 LTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGF-DRNERYPDA-------PAVPKTV 83
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ L + EGC S+ L+ VPRY +++ TG D+ G AEG+ AR+
Sbjct: 84 LINPTIEALS-DEMEDGWEGCLSVPGLRGVVPRYTRLRYTGYDQHGHAIDRVAEGFHARV 142
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 143 VQHECDHLQGILY 155
>gi|238026898|ref|YP_002911129.1| peptide deformylase [Burkholderia glumae BGR1]
gi|237876092|gb|ACR28425.1| Peptide deformylase [Burkholderia glumae BGR1]
Length = 177
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 11/131 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
++ M M + GL+APQ+G+ L+L I F G+ ++ + A P V I
Sbjct: 31 LVADMFETMHHANGAGLAAPQIGVGLQLIIFGF---------GNNARYPDAPAVPETVLI 81
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP ++ L D EGC S+ ++ V RYRKV TG D+ GK AE + AR++Q
Sbjct: 82 NPSIEYLP-PDMEEGWEGCLSVPGMRGVVSRYRKVHYTGFDQYGKRIDRIAEDFHARVVQ 140
Query: 123 HEMDHLDGLLF 133
HE DHL G L+
Sbjct: 141 HEYDHLIGKLY 151
>gi|32477751|ref|NP_870745.1| peptide deformylase [Rhodopirellula baltica SH 1]
gi|417300627|ref|ZP_12087829.1| peptide deformylase [Rhodopirellula baltica WH47]
gi|421615286|ref|ZP_16056316.1| peptide deformylase [Rhodopirellula baltica SH28]
gi|440712473|ref|ZP_20893093.1| peptide deformylase [Rhodopirellula baltica SWK14]
gi|449132747|ref|ZP_21768751.1| peptide deformylase [Rhodopirellula europaea 6C]
gi|39930837|sp|Q7UHZ5.1|DEF_RHOBA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|32448305|emb|CAD77822.1| peptide deformylase [Rhodopirellula baltica SH 1]
gi|327543078|gb|EGF29520.1| peptide deformylase [Rhodopirellula baltica WH47]
gi|408493937|gb|EKJ98565.1| peptide deformylase [Rhodopirellula baltica SH28]
gi|436442827|gb|ELP35927.1| peptide deformylase [Rhodopirellula baltica SWK14]
gi|448888121|gb|EMB18454.1| peptide deformylase [Rhodopirellula europaea 6C]
Length = 201
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 15/142 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K + +M ++M FD GL+A QV LP+R+F+ +P EG+ V
Sbjct: 27 LKSMADEMLDLMYEFDGVGLAANQVDLPIRMFVA---NPTGKRDEGE----------SWV 73
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NPE+ D TA EGC S+ L +V R + V+L G D G + +G+ AR+
Sbjct: 74 ILNPEIDRPKGND--TAQEGCLSVPGLYGQVKRPKTVRLRGFDLQGNEINQVLDGFMARV 131
Query: 121 IQHEMDHLDGLLFTDSMLPKSL 142
+QHE+DHLDG++F D + + L
Sbjct: 132 VQHEVDHLDGIMFFDRIGEEGL 153
>gi|409196264|ref|ZP_11224927.1| peptide deformylase [Marinilabilia salmonicolor JCM 21150]
Length = 185
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 11/159 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHMVWI 62
+I M M + D GL+ PQ+GL R+F + A P +E D KK V+I
Sbjct: 31 LIDDMFETMYKADGIGLAGPQIGLSKRIFTIDATPLADEMPELADFKK---------VFI 81
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
N + D V+ EGC SL + V R ++++ +D K EGWAAR+IQ
Sbjct: 82 NARIVERDGA-SVSDNEGCLSLPGINESVGRLSRIRIQYVDADFKEHDEVYEGWAARVIQ 140
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
HE DH+DG+LF D + P + + + G + + Y
Sbjct: 141 HEYDHIDGILFVDHLAPLKKRLLKSKLNAISKGKVNVNY 179
>gi|253681963|ref|ZP_04862760.1| peptide deformylase [Clostridium botulinum D str. 1873]
gi|253561675|gb|EES91127.1| peptide deformylase [Clostridium botulinum D str. 1873]
Length = 149
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I MK M D GL+APQ+G+ RL ++ D S IN
Sbjct: 31 LIEDMKETMYEADGVGLAAPQIGVLKRLVVIDVGDGSISL------------------IN 72
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE I+ Y+ T EGC SL Q KV R KV L+E G+ EG AR I H
Sbjct: 73 PE--IISYEGSQTDYEGCLSLPGKQGKVTRPYKVIAKALNEKGEEVEINGEGLLARAICH 130
Query: 124 EMDHLDGLLFTDSML 138
E+DHLDG+LF D ++
Sbjct: 131 ELDHLDGVLFMDKVI 145
>gi|115378396|ref|ZP_01465558.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
gi|115364586|gb|EAU63659.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
Length = 188
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 74/149 (49%), Gaps = 8/149 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEG----DIKKFEMQAF 56
+K +I M++ M+ GL+APQV + + + G D+ E Q
Sbjct: 30 VKQLIQLMRDTMRDAPGVGLAAPQV---GVGLRLVVVEDRAEYHVGIKPEDLSARERQPV 86
Query: 57 PHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
V INP + + D V EGC S+ A VPR R V++ LDE G P + A+GW
Sbjct: 87 DFHVLINPTLVVED-PALVEFHEGCLSVAGFSALVPRARGVRVEALDEHGAPVTLVAKGW 145
Query: 117 AARIIQHEMDHLDGLLFTDSMLPKSLECV 145
ARI+QHE DHL+G L+ D M P+S
Sbjct: 146 YARILQHEFDHLEGRLYLDRMEPRSFSTA 174
>gi|15892003|ref|NP_359717.1| polypeptide deformylase [Rickettsia conorii str. Malish 7]
gi|157827954|ref|YP_001494196.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith']
gi|165932642|ref|YP_001649431.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
gi|238650519|ref|YP_002916371.1| peptide deformylase [Rickettsia peacockii str. Rustic]
gi|378720753|ref|YP_005285640.1| peptide deformylase [Rickettsia rickettsii str. Colombia]
gi|378722104|ref|YP_005286990.1| peptide deformylase [Rickettsia rickettsii str. Arizona]
gi|378723463|ref|YP_005288347.1| peptide deformylase [Rickettsia rickettsii str. Hauke]
gi|379016985|ref|YP_005293220.1| peptide deformylase [Rickettsia rickettsii str. Brazil]
gi|379017252|ref|YP_005293486.1| peptide deformylase [Rickettsia rickettsii str. Hino]
gi|379018584|ref|YP_005294818.1| peptide deformylase [Rickettsia rickettsii str. Hlp#2]
gi|379711821|ref|YP_005300160.1| peptide deformylase [Rickettsia philipii str. 364D]
gi|15619118|gb|AAL02618.1| polypeptide deformylase [Rickettsia conorii str. Malish 7]
gi|157800435|gb|ABV75688.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith']
gi|165907729|gb|ABY72025.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
gi|238624617|gb|ACR47323.1| peptide deformylase [Rickettsia peacockii str. Rustic]
gi|376325509|gb|AFB22749.1| peptide deformylase [Rickettsia rickettsii str. Brazil]
gi|376325777|gb|AFB23016.1| peptide deformylase [Rickettsia rickettsii str. Colombia]
gi|376327128|gb|AFB24366.1| peptide deformylase [Rickettsia rickettsii str. Arizona]
gi|376328466|gb|AFB25703.1| peptide deformylase [Rickettsia philipii str. 364D]
gi|376329817|gb|AFB27053.1| peptide deformylase [Rickettsia rickettsii str. Hino]
gi|376331164|gb|AFB28398.1| peptide deformylase [Rickettsia rickettsii str. Hlp#2]
gi|376332478|gb|AFB29711.1| peptide deformylase [Rickettsia rickettsii str. Hauke]
Length = 224
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 10/127 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFE---MQAFPHMVWINPEMKILDYKDKV 75
GL+APQ+G+ + I A + + ++KK+ P +WINP K + DK
Sbjct: 84 GLAAPQIGISKCIIIFAVHE------DAELKKWHPDLKDTMPKTIWINPSYKPIGI-DKH 136
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+++ V R++K+ D G AEG+ AR+IQHE+DHL+G +F D
Sbjct: 137 EDYEGCFSVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLD 196
Query: 136 SMLPKSL 142
+ PK +
Sbjct: 197 YVAPKKI 203
>gi|207743249|ref|YP_002259641.1| peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein
[Ralstonia solanacearum IPO1609]
gi|206594646|emb|CAQ61573.1| peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein
[Ralstonia solanacearum IPO1609]
Length = 177
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M GL+APQ+G+ L++ I F D E + + A P V
Sbjct: 28 LTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGF-DRNERYPDA-------PAVPKTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ L + EGC S+ L+ VPRY +++ TG D+ G AEG+ AR+
Sbjct: 80 LINPTIEALS-DEMEDGWEGCLSVPGLRGVVPRYTRLRYTGYDQHGHAIDRIAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 139 VQHECDHLQGILY 151
>gi|383483428|ref|YP_005392341.1| peptide deformylase [Rickettsia parkeri str. Portsmouth]
gi|378935782|gb|AFC74282.1| peptide deformylase [Rickettsia parkeri str. Portsmouth]
Length = 224
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 10/127 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFE---MQAFPHMVWINPEMKILDYKDKV 75
GL+APQ+G+ + I A + + ++KK+ P +WINP K + DK
Sbjct: 84 GLAAPQIGISKCIIIFAVHE------DAELKKWHPDLKDTMPKTIWINPSYKPIGI-DKH 136
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+++ V R++K+ D G AEG+ AR+IQHE+DHL+G +F D
Sbjct: 137 EDYEGCFSVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLD 196
Query: 136 SMLPKSL 142
+ PK +
Sbjct: 197 YVAPKKI 203
>gi|34580961|ref|ZP_00142441.1| polypeptide deformylase [Rickettsia sibirica 246]
gi|28262346|gb|EAA25850.1| polypeptide deformylase [Rickettsia sibirica 246]
Length = 224
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 10/127 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFE---MQAFPHMVWINPEMKILDYKDKV 75
GL+APQ+G+ + I A + + ++KK+ P +WINP K + DK
Sbjct: 84 GLAAPQIGISKCIIIFAVHE------DAELKKWHPDLKDTMPKTIWINPSYKPIGI-DKH 136
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+++ V R++K+ D G AEG+ AR+IQHE+DHL+G +F D
Sbjct: 137 EDYEGCFSVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLD 196
Query: 136 SMLPKSL 142
+ PK +
Sbjct: 197 YVAPKKI 203
>gi|256832092|ref|YP_003160819.1| peptide deformylase [Jonesia denitrificans DSM 20603]
gi|256685623|gb|ACV08516.1| peptide deformylase [Jonesia denitrificans DSM 20603]
Length = 215
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 29/165 (17%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M + M+ + GL+APQ+G+ R+F+ PD +E V +N
Sbjct: 30 LVADMYDTMRVSNGVGLAAPQIGVGQRIFVFDAPDEDEQR--------------RGVVVN 75
Query: 64 PEMKILDYKDK-------------VTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDS 110
P + I+ + +T +EGC S + R+ V++TG DE G+P
Sbjct: 76 PSLMIVQRPPRFALKGEGKRPPKSLTDVEGCLSFPGPDFEAKRHYAVRVTGWDEHGEPVV 135
Query: 111 WTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
EGW AR++QHE DHLDGLL+ D + K + + I+ +NG
Sbjct: 136 IDGEGWFARVLQHEYDHLDGLLYVDRL--KGRDKAEARAISQENG 178
>gi|428768631|ref|YP_007160421.1| peptide deformylase [Cyanobacterium aponinum PCC 10605]
gi|428682910|gb|AFZ52377.1| peptide deformylase [Cyanobacterium aponinum PCC 10605]
Length = 186
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%), Gaps = 14/131 (10%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
QM M + GL+APQ+G+ ++ +V P+ S+ MV INPE+
Sbjct: 46 QMLQTMYTENGIGLAAPQIGVHKQMIVVDC-QPDNPASQP------------MVLINPEI 92
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
KD A EGC S+ ++ +V R R +QLT DE+GK A G +R+IQHEMD
Sbjct: 93 TKFS-KDLCVAEEGCLSIPNVFLEVIRPRNIQLTYKDESGKKHKIKASGLLSRVIQHEMD 151
Query: 127 HLDGLLFTDSM 137
HL G+LF D +
Sbjct: 152 HLHGILFVDRV 162
>gi|300691609|ref|YP_003752604.1| peptide deformylase [Ralstonia solanacearum PSI07]
gi|299078669|emb|CBJ51327.1| Peptide deformylase [Ralstonia solanacearum PSI07]
gi|344169919|emb|CCA82288.1| peptide deformylase [blood disease bacterium R229]
Length = 170
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M GL+APQ+G+ L++ I F D E + + A P V
Sbjct: 21 LTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGF-DRSERYPDA-------PAVPKTV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ L + EGC S+ L+ VPRY +++ TG D+ G+ AEG+ AR+
Sbjct: 73 LINPTIEPLS-DEMEDGWEGCLSVPGLRGVVPRYTRLRYTGYDQHGQAIDRIAEGFHARV 131
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 132 VQHECDHLQGILY 144
>gi|379709690|ref|YP_005264895.1| peptide deformylase [Nocardia cyriacigeorgica GUH-2]
gi|374847189|emb|CCF64259.1| peptide deformylase [Nocardia cyriacigeorgica GUH-2]
Length = 180
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 74/139 (53%), Gaps = 19/139 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ + M G++APQ+G+ LR+F+ + GD A H+V
Sbjct: 28 LRQLVTDLTETMHDDGGVGMAAPQIGVGLRVFV---------YDTGD-------AAGHLV 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP +L ++++ EGC S+ L+ R +V+ TG+D TG P + AEG AR
Sbjct: 72 --NPSWTVLGDEEQI-GPEGCLSIPGLRYDTRRALRVRATGVDMTGAPVEFEAEGLLARC 128
Query: 121 IQHEMDHLDGLLFTDSMLP 139
+QHE DHLDG+LF D + P
Sbjct: 129 VQHETDHLDGVLFIDRLEP 147
>gi|350273103|ref|YP_004884416.1| polypeptide deformylase [Rickettsia japonica YH]
gi|348592316|dbj|BAK96277.1| polypeptide deformylase [Rickettsia japonica YH]
Length = 224
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 10/127 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFE---MQAFPHMVWINPEMKILDYKDKV 75
GL+APQ+G+ + I A + + ++KK+ P +WINP K + DK
Sbjct: 84 GLAAPQIGISKCIIIFAVHE------DAELKKWRPDLKDTMPKTIWINPSYKPIGI-DKH 136
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+++ V R++K+ D G AEG+ AR+IQHE+DHL+G +F D
Sbjct: 137 EDYEGCFSVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLD 196
Query: 136 SMLPKSL 142
+ PK +
Sbjct: 197 YVAPKKI 203
>gi|298247409|ref|ZP_06971214.1| peptide deformylase [Ktedonobacter racemifer DSM 44963]
gi|297550068|gb|EFH83934.1| peptide deformylase [Ktedonobacter racemifer DSM 44963]
Length = 172
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 76/151 (50%), Gaps = 16/151 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M M D GL+APQ+GL LRLF+V DPE + +
Sbjct: 28 LRKLVKDMFETMHANDGAGLAAPQIGLSLRLFVVELEDPE------------TEKHYKVA 75
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQA-KVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
NPE I+ + + T L+GC S+ V R KV + G D GKP AEG+ A
Sbjct: 76 MANPE--IIKTEGEQTGLDGCLSIPGYYGVNVRRANKVIVKGQDLNGKPMKVMAEGYYAW 133
Query: 120 IIQHEMDHLDGLLFTDSM-LPKSLECVCWQD 149
+QHE+DHL+G+LF D + P+ L V D
Sbjct: 134 ALQHEIDHLNGVLFIDLLDSPEDLREVRHSD 164
>gi|218259650|ref|ZP_03475313.1| hypothetical protein PRABACTJOHN_00972 [Parabacteroides johnsonii
DSM 18315]
gi|423344488|ref|ZP_17322200.1| peptide deformylase [Parabacteroides johnsonii CL02T12C29]
gi|218224966|gb|EEC97616.1| hypothetical protein PRABACTJOHN_00972 [Parabacteroides johnsonii
DSM 18315]
gi|409212886|gb|EKN05920.1| peptide deformylase [Parabacteroides johnsonii CL02T12C29]
Length = 185
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M M D GL+APQVGL LRL ++ + F E K F+
Sbjct: 27 LKQLVANMFETMYNADGVGLAAPQVGLSLRLLVIDADVMGDDFPE--CKGFKR------A 78
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + + +++V+ EGC SL + KV R KV++ LDE K T EG+AAR+
Sbjct: 79 MINP-VFLEKSEEEVSMEEGCLSLPGVHEKVARSVKVRVKYLDEDLKEHEETVEGFAARV 137
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHE +HL+G +F D++
Sbjct: 138 VQHECEHLEGHVFIDNI 154
>gi|344171473|emb|CCA84085.1| peptide deformylase [Ralstonia syzygii R24]
Length = 170
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M GL+APQ+G+ L++ I F D E + + A P V
Sbjct: 21 LTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGF-DRSERYPDA-------PAVPKTV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ L + EGC S+ L+ VPRY +++ TG D+ G+ AEG+ AR+
Sbjct: 73 LINPTIEPLS-DEMEDGWEGCLSVPGLRGVVPRYTRLRYTGYDQHGQAIDRIAEGFHARV 131
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 132 VQHECDHLQGILY 144
>gi|429726718|ref|ZP_19261504.1| peptide deformylase [Prevotella sp. oral taxon 473 str. F0040]
gi|429145666|gb|EKX88751.1| peptide deformylase [Prevotella sp. oral taxon 473 str. F0040]
Length = 184
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 8/158 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ D GL+APQ+GLP+R+ +V E F E K +AF IN
Sbjct: 30 LIDNMFETMEESDGVGLAAPQIGLPIRILVVGLDSLAEDFPE---YKDYNKAF-----IN 81
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
+ +D ++ + EGC S+ + V R ++V++ LD + +G+ AR++QH
Sbjct: 82 AHVVEVDEENLGSYEEGCLSIPGIHESVKRPKRVRVKWLDTNFQEHDEWVDGFLARVLQH 141
Query: 124 EMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
E+DHLDG LF D + P + + + NL G + Y
Sbjct: 142 EIDHLDGKLFIDHISPMRKQLIKKKLNNLLQGKVRCHY 179
>gi|310819401|ref|YP_003951759.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
gi|309392473|gb|ADO69932.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1]
Length = 200
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 74/149 (49%), Gaps = 8/149 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEG----DIKKFEMQAF 56
+K +I M++ M+ GL+APQV + + + G D+ E Q
Sbjct: 30 VKQLIQLMRDTMRDAPGVGLAAPQV---GVGLRLVVVEDRAEYHVGIKPEDLSARERQPV 86
Query: 57 PHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
V INP + + D V EGC S+ A VPR R V++ LDE G P + A+GW
Sbjct: 87 DFHVLINPTLVVED-PALVEFHEGCLSVAGFSALVPRARGVRVEALDEHGAPVTLVAKGW 145
Query: 117 AARIIQHEMDHLDGLLFTDSMLPKSLECV 145
ARI+QHE DHL+G L+ D M P+S
Sbjct: 146 YARILQHEFDHLEGRLYLDRMEPRSFSTA 174
>gi|51244598|ref|YP_064482.1| peptide deformylase [Desulfotalea psychrophila LSv54]
gi|81692939|sp|Q6AQ98.1|DEF_DESPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|50875635|emb|CAG35475.1| probable peptide deformylase [Desulfotalea psychrophila LSv54]
Length = 169
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 14/120 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQ+G L+L +V+ E+S E +MV NPE I++ ++
Sbjct: 45 IGLAAPQIGESLKLVVVSTARREDSKQE------------YMVMANPE--IVEKEESQVD 90
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ L A V RYRK+++ D G+P S T E A ++QHE+DHL+G+LF D +
Sbjct: 91 EEGCLSVPELLAMVKRYRKIKVNYQDINGEPCSMTVEDRFAVVLQHEIDHLNGILFLDHL 150
>gi|337279680|ref|YP_004619152.1| peptide deformylase [Ramlibacter tataouinensis TTB310]
gi|334730757|gb|AEG93133.1| candidate peptide deformylase (Polypeptide deformylase)
[Ramlibacter tataouinensis TTB310]
Length = 196
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M M + GL+APQ+G+ L+L I P + + P V
Sbjct: 46 IRRLVADMFETMAAVNGAGLAAPQIGVDLQLVIFGTDAPNPRYPDA-------PPVPRTV 98
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L +K EGC S+ L+ VPR+R+++ G D G+P AEG+ AR+
Sbjct: 99 LLNPVVTPLG-DEKEEGWEGCLSVPGLRGVVPRHRRIRYRGFDPDGRPIDREAEGFHARV 157
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 158 VQHECDHLVGKLY 170
>gi|23396567|sp|Q92JI7.2|DEF2_RICCN RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
Length = 202
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFE---MQAFPHMVWINPEMKILDYKDKV 75
GL+APQ+G+ + I A + ++KK+ P +WINP K + DK
Sbjct: 62 GLAAPQIGISKCIIIFAV------HEDAELKKWHPDLKDTMPKTIWINPSYKPIGI-DKH 114
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+++ V R++K+ D G AEG+ AR+IQHE+DHL+G +F D
Sbjct: 115 EDYEGCFSVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLD 174
Query: 136 SMLPKSL 142
+ PK +
Sbjct: 175 YVAPKKI 181
>gi|359776706|ref|ZP_09280009.1| peptide deformylase [Arthrobacter globiformis NBRC 12137]
gi|359305843|dbj|GAB13838.1| peptide deformylase [Arthrobacter globiformis NBRC 12137]
Length = 200
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 21/135 (15%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M M+ + GL+APQ+G+ LR+F ++ G ++ H+ IN
Sbjct: 31 LVADMTETMEDVEGAGLAAPQIGVSLRVF---------TYRIGGVEG-------HI--IN 72
Query: 64 PEMKILDYKD-KVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
P ++ + +D + +EGC S+ L V RYR ++TG+D G P S AEG AR Q
Sbjct: 73 PVLE--NSEDFQPDEVEGCLSIPGLGFPVRRYRSTRVTGVDINGNPVSVEAEGMLARCFQ 130
Query: 123 HEMDHLDGLLFTDSM 137
HE DHLDG+LFTD +
Sbjct: 131 HETDHLDGILFTDRL 145
>gi|425736529|ref|ZP_18854832.1| peptide deformylase [Brevibacterium casei S18]
gi|425478064|gb|EKU45268.1| peptide deformylase [Brevibacterium casei S18]
Length = 221
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M M+ GL+ PQVG+ L +F+ DP +E + E + P +N + +
Sbjct: 59 MAKTMREAPGVGLAGPQVGVGLSIFVAE--DPAAVSAEVAAVR-EREPLPLRTVLNAQYE 115
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
+ + EGC S+ QA V R R + L G+D TG P GW+ARI+ HE DH
Sbjct: 116 PV-TGELAAFYEGCLSIPGYQAVVARPRTIGLRGVDLTGAPIDEEVTGWSARIVAHETDH 174
Query: 128 LDGLLFTDSMLPKSLECVC-----WQDINLQNGLLELRYYM 163
LDG+LF D +SL W + + Q EL + +
Sbjct: 175 LDGILFLDKAEMRSLSTNAAVARLWNEPSTQRAATELGFTL 215
>gi|119899899|ref|YP_935112.1| peptide deformylase [Azoarcus sp. BH72]
gi|119672312|emb|CAL96226.1| probable peptide deformylase [Azoarcus sp. BH72]
Length = 177
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I+ M M GL+APQVG+ LRL I F + E + + F + A P +
Sbjct: 28 LRRIVADMVETMHAAGGVGLAAPQVGIDLRLVIFGF-ERSERYPDAPPVPFTVLANPVLT 86
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
++ E++ EGC S+ L+ VPR+R + G D GKP EG+ AR+
Sbjct: 87 PLSDELE--------EGWEGCLSVPGLRGWVPRFRHLLYRGADIDGKPLEREVEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHLDG+L+
Sbjct: 139 VQHECDHLDGILY 151
>gi|313892009|ref|ZP_07825610.1| peptide deformylase [Dialister microaerophilus UPII 345-E]
gi|313119652|gb|EFR42843.1| peptide deformylase [Dialister microaerophilus UPII 345-E]
Length = 153
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
MK +I MK M + GL+APQ+GL R+F+ D + F V
Sbjct: 30 MKHLIADMKKTMYAENGVGLAAPQIGLSKRIFV---ADCNDGFD---------------V 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INPE + LD KV EGC S+ L +V RY V + D GK A G AR
Sbjct: 72 YINPEWEPLD-DSKVIETEGCLSVSDLYGEVERYAHVIVKYQDIRGKRKQKKATGLFARC 130
Query: 121 IQHEMDHLDGLLFTDSML 138
+QHE+DHL+G LF D +
Sbjct: 131 VQHEIDHLNGTLFIDKAI 148
>gi|393777005|ref|ZP_10365299.1| peptide deformylase [Ralstonia sp. PBA]
gi|392716362|gb|EIZ03942.1| peptide deformylase [Ralstonia sp. PBA]
Length = 176
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 11/134 (8%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ M + M+ GL+APQ+G+ L++ I F + + + E A P V
Sbjct: 28 LHALVEDMFDTMEAAKGAGLAAPQIGVDLQVVIFGF--------DRNPRYPEAPAVPKTV 79
Query: 61 WINPEMKILDYKDKVT-ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
INP + ++ D++ EGC S+ ++ VPRY + +G D+ G P AEG+ AR
Sbjct: 80 LINPALTAIN--DEIEDGWEGCLSVPGMRGVVPRYVHLHYSGFDQYGHPIDRIAEGFHAR 137
Query: 120 IIQHEMDHLDGLLF 133
++QHE DHL G+L+
Sbjct: 138 VVQHECDHLQGILY 151
>gi|254424040|ref|ZP_05037758.1| peptide deformylase [Synechococcus sp. PCC 7335]
gi|196191529|gb|EDX86493.1| peptide deformylase [Synechococcus sp. PCC 7335]
Length = 187
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 16/138 (11%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ +M M D GL+APQVG+ +L ++ DPE +A +V
Sbjct: 41 LRDLVRKMLQTMYSEDGIGLAAPQVGVNKQLLVID-ADPEN------------EAASALV 87
Query: 61 WINPEMKILDYKDKVTA-LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+NP KI+ Y D++ A EGC S+ + V R ++++ DE G+P A+ AR
Sbjct: 88 LVNP--KIIRYSDELAAGQEGCLSIPGVYLDVIRPAAIEVSFKDENGRPRKLKADDLLAR 145
Query: 120 IIQHEMDHLDGLLFTDSM 137
+IQHEMDHL+G+LF D +
Sbjct: 146 VIQHEMDHLNGVLFVDRV 163
>gi|261856616|ref|YP_003263899.1| peptide deformylase [Halothiobacillus neapolitanus c2]
gi|261837085|gb|ACX96852.1| peptide deformylase [Halothiobacillus neapolitanus c2]
Length = 166
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 12/122 (9%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
G++APQVG+ R+ IV + + + H+V INPE+ D
Sbjct: 47 GIAAPQVGVLQRICIV----------DATRARRPVDNHGHLVLINPEITAWD--GFAVGR 94
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
EGC S+ KV R K++L D GKP ++T G+ ARI QHE+DHLDG+LF D ++
Sbjct: 95 EGCLSVPDYTGKVIRAEKIELKAQDRNGKPCTFTMSGFEARIAQHEVDHLDGILFLDRLV 154
Query: 139 PK 140
+
Sbjct: 155 SR 156
>gi|117165081|emb|CAJ88634.1| putative polypeptide deformylase [Streptomyces ambofaciens ATCC
23877]
Length = 214
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 10/131 (7%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMVWINP 64
++ M+ GL+APQVG+ LR+ ++ P P E + G + + P V +NP
Sbjct: 57 LRLTMRAAPGVGLAAPQVGVGLRIAVIEDPAPVPDEVRVARGRVPQ------PFRVLVNP 110
Query: 65 EMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHE 124
+ + EGC S+ QA V R+ +V+L DE G+ EGW ARI+QHE
Sbjct: 111 SYEPAG-PGRAAFYEGCLSVPGWQAVVARHAEVRLVARDEHGRAVDEVFEGWPARIVQHE 169
Query: 125 MDHLDGLLFTD 135
DHLDG+L+ D
Sbjct: 170 TDHLDGVLYLD 180
>gi|157692252|ref|YP_001486714.1| peptide deformylase [Bacillus pumilus SAFR-032]
gi|157681010|gb|ABV62154.1| formylmethionine deformylase [Bacillus pumilus SAFR-032]
Length = 160
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%), Gaps = 18/131 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M D GL+APQ+G+ R+ +V EES G I +NPE
Sbjct: 35 MYDTMLELDGVGLAAPQIGISQRIAVVDIG--EES---GRID-----------LVNPE-- 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
+L+ K T +EGC S SL V R V++ D+ GKP + AEG+ AR + HE+DH
Sbjct: 77 VLEVKGSQTDIEGCLSFPSLYGTVERPSYVKVKAFDKKGKPFTIEAEGFLARALLHEIDH 136
Query: 128 LDGLLFTDSML 138
LDG+LFT ++
Sbjct: 137 LDGILFTSKII 147
>gi|409124058|ref|ZP_11223453.1| peptide deformylase [Gillisia sp. CBA3202]
Length = 196
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 8/148 (5%)
Query: 19 GLSAPQVGLPLRLFIV---AFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
GL+APQVG +RLFI+ F D E E + EM+ MV+INP++ I + ++
Sbjct: 45 GLAAPQVGRAIRLFIIDPSPFADDEHVSEEESAQLAEMK----MVFINPKI-ITEEGEEW 99
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+ ++ V R + + LDE + + T G AR+IQHE DH++G+LFTD
Sbjct: 100 AFNEGCLSIPDVREDVFRKPTITIEYLDENFESQTKTFSGIGARVIQHEYDHIEGILFTD 159
Query: 136 SMLPKSLECVCWQDINLQNGLLELRYYM 163
+ + + N+ G + Y M
Sbjct: 160 KLSSLKKRLIKGKLTNISKGKVHADYRM 187
>gi|78355060|ref|YP_386509.1| peptide deformylase [Desulfovibrio alaskensis G20]
gi|78217465|gb|ABB36814.1| peptide deformylase [Desulfovibrio alaskensis G20]
Length = 169
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M M D GL+APQVG RL +V PE + D++ +INP ++
Sbjct: 34 MAETMYDADGIGLAAPQVGATCRLIVVDVSGPE---AREDLR----------TYINPRLE 80
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
+L+ KV EGC S+ +L++KV R KV+L D G A+G + +QHE+DH
Sbjct: 81 LLE--GKVDTEEGCLSVPALRSKVTRTEKVRLHATDLDGNAVCIDADGLLSICLQHEIDH 138
Query: 128 LDGLLFTD--SMLPKSL 142
LDG LF D S L +SL
Sbjct: 139 LDGTLFIDKISRLKRSL 155
>gi|417003302|ref|ZP_11942373.1| peptide deformylase [Anaerococcus prevotii ACS-065-V-Col13]
gi|325478778|gb|EGC81889.1| peptide deformylase [Anaerococcus prevotii ACS-065-V-Col13]
Length = 155
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 21/149 (14%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K+++ M M + D GL+APQVG+ R+ +V DP + + G +K
Sbjct: 28 IKVLLDDMAETMYQADGVGLAAPQVGILKRVIVV---DPHDETT-GLVK----------- 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NPE I++ + +EGC S+ + A V R V++ +DE G W A G+ A I
Sbjct: 73 LVNPE--IIEADGEQVGVEGCLSIPNFNATVKRPEHVKVKYIDEDGNEKIWDAHGFPAVI 130
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQD 149
+ HE+DHLDG+LF D KS+E V + +
Sbjct: 131 LSHEIDHLDGILFRD----KSIEEVKYDN 155
>gi|206889750|ref|YP_002248176.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347]
gi|238058215|sp|B5YIL7.1|DEF_THEYD RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|206741688|gb|ACI20745.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 165
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 69/136 (50%), Gaps = 15/136 (11%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M + GL+APQVG+ RL +V E++ S +V IN
Sbjct: 31 LIDNMIETMYNANGIGLAAPQVGVLKRLIVVDTSPREQNQS-------------LIVLIN 77
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE I D + ++ + EGC SL ++ R +V + GLD GK A G AR +QH
Sbjct: 78 PE--ITDSEGEILSEEGCLSLPGFTTRLKRKERVIVKGLDRNGKEIEIEATGLLARALQH 135
Query: 124 EMDHLDGLLFTDSMLP 139
E+DHLDG+L D + P
Sbjct: 136 EIDHLDGILLIDKISP 151
>gi|72383267|ref|YP_292622.1| peptide deformylase [Prochlorococcus marinus str. NATL2A]
gi|123773734|sp|Q46HV9.1|DEF_PROMT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|72003117|gb|AAZ58919.1| peptide deformylase [Prochlorococcus marinus str. NATL2A]
Length = 202
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 63/120 (52%), Gaps = 14/120 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ RL ++ KFE P MV+INPE+ I T
Sbjct: 72 IGLAAPQVGIQKRLLVIDL-------------KFEDPNSPPMVFINPEI-ISSSATLDTY 117
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + V R ++L+ DE G+P A+G AR IQHE+DHL+G+ F D +
Sbjct: 118 EEGCLSIPGVYLNVLRPSSIKLSYRDEMGRPKKMNADGLMARCIQHEIDHLNGVCFVDKV 177
>gi|212691280|ref|ZP_03299408.1| hypothetical protein BACDOR_00771 [Bacteroides dorei DSM 17855]
gi|237712291|ref|ZP_04542772.1| peptide deformylase [Bacteroides sp. 9_1_42FAA]
gi|265751999|ref|ZP_06087792.1| polypeptide deformylase [Bacteroides sp. 3_1_33FAA]
gi|345512964|ref|ZP_08792488.1| peptide deformylase [Bacteroides dorei 5_1_36/D4]
gi|423229338|ref|ZP_17215743.1| peptide deformylase [Bacteroides dorei CL02T00C15]
gi|423240162|ref|ZP_17221277.1| peptide deformylase [Bacteroides dorei CL03T12C01]
gi|423245181|ref|ZP_17226255.1| peptide deformylase [Bacteroides dorei CL02T12C06]
gi|212666512|gb|EEB27084.1| peptide deformylase [Bacteroides dorei DSM 17855]
gi|229434956|gb|EEO45033.1| peptide deformylase [Bacteroides dorei 5_1_36/D4]
gi|229453612|gb|EEO59333.1| peptide deformylase [Bacteroides sp. 9_1_42FAA]
gi|263236791|gb|EEZ22261.1| polypeptide deformylase [Bacteroides sp. 3_1_33FAA]
gi|392634307|gb|EIY28232.1| peptide deformylase [Bacteroides dorei CL02T00C15]
gi|392640114|gb|EIY33920.1| peptide deformylase [Bacteroides dorei CL02T12C06]
gi|392645151|gb|EIY38885.1| peptide deformylase [Bacteroides dorei CL03T12C01]
Length = 184
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 73/140 (52%), Gaps = 15/140 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFP--H 58
+K +I M M R D GL+APQ+GLP+R+ + D+ E+ F
Sbjct: 27 LKELIANMFETMNRADGVGLAAPQIGLPIRVVTIDL----------DVMSDELPEFKDFR 76
Query: 59 MVWINPEMKILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWA 117
+INP IL+ ++V+ EGC SL + V R ++ +T LDE K EG+
Sbjct: 77 RAYINPH--ILEVGGEEVSMEEGCLSLPGIHETVKRPDRIHVTYLDEELKEHDEWVEGYL 134
Query: 118 ARIIQHEMDHLDGLLFTDSM 137
AR++QHE DHLDG +F D +
Sbjct: 135 ARVMQHEFDHLDGKMFIDHL 154
>gi|423299399|ref|ZP_17277424.1| peptide deformylase [Bacteroides finegoldii CL09T03C10]
gi|408473208|gb|EKJ91730.1| peptide deformylase [Bacteroides finegoldii CL09T03C10]
Length = 184
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M D GL+APQ+GLP+R+ + E + E K F +
Sbjct: 27 LKELIANMFETMVHADGVGLAAPQIGLPIRVVTITLDPLSEDYPE--FKDF------NKA 78
Query: 61 WINPEMKILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+INP IL+ ++V+ EGC SL + V R K+++ +DE EG+ AR
Sbjct: 79 YINPH--ILEVGGEEVSMEEGCLSLPGIHETVKRGDKIRVKYMDENFVEHEEVVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHLDG +F D + P
Sbjct: 137 VMQHEFDHLDGKMFIDHISP 156
>gi|288574972|ref|ZP_06393329.1| peptide deformylase [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288570713|gb|EFC92270.1| peptide deformylase [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 164
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 20/144 (13%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVW 61
K + +M+++M +D GL+APQVG L++ ++A+ EG + V
Sbjct: 29 KSFLEEMESLMYEYDGVGLAAPQVGESLKVAVIAY--------EGKLH----------VL 70
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP +I+DY + EGC S + V R V + DE G+P S AEG+ AR +
Sbjct: 71 INP--RIVDYDGRQVDQEGCLSFPGIFEDVARPASVVVEAQDENGEPYSIEAEGFLARAM 128
Query: 122 QHEMDHLDGLLFTDSMLPKSLECV 145
HE+DHL+G L D + P E V
Sbjct: 129 CHEIDHLNGKLMIDHLSPMKREMV 152
>gi|148272776|ref|YP_001222337.1| putative polypeptide deformylase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830706|emb|CAN01646.1| putative polypeptide deformylase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 188
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 17/141 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M + M GL+APQVG+PLR+F+ ++ E G V
Sbjct: 28 LRTLVADMFDTMDEAPGVGLAAPQVGVPLRVFVYSYETDEGEPLRG-------------V 74
Query: 61 WINPEMKI----LDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
+NP++ I + D+ T EGC S + + R + L +D G+P A GW
Sbjct: 75 AVNPDLFITPVAVREADEDTEEEGCLSFPGERFPLVRADRAILRAVDLDGRPFEIQAAGW 134
Query: 117 AARIIQHEMDHLDGLLFTDSM 137
ARI+QHE DHLDGLL+TD +
Sbjct: 135 FARILQHEFDHLDGLLYTDRL 155
>gi|227500109|ref|ZP_03930180.1| peptide deformylase [Anaerococcus tetradius ATCC 35098]
gi|227217824|gb|EEI83121.1| peptide deformylase [Anaerococcus tetradius ATCC 35098]
Length = 158
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 21/151 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K+++ M + M D GL+APQVG+ R+ +V DP + S G IK
Sbjct: 28 IKVLLDDMADTMYEADGVGLAAPQVGILKRIIVV---DPHDD-STGLIK----------- 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NPE I++ + +EGC S+ + A V R V++ L+E G+ W A G+ A I
Sbjct: 73 LVNPE--IIEEDGEQVGIEGCLSIPNFNATVKRPEHVKVKYLNENGEEKIWDAHGFPAEI 130
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
+ HE+DHL+G+LF D K++E V + N
Sbjct: 131 LSHEIDHLNGILFRD----KAIEEVKYDTEN 157
>gi|374318828|ref|YP_005065326.1| Polypeptide deformylase [Rickettsia slovaca 13-B]
gi|383750721|ref|YP_005425822.1| Polypeptide deformylase [Rickettsia slovaca str. D-CWPP]
gi|360041376|gb|AEV91758.1| Polypeptide deformylase [Rickettsia slovaca 13-B]
gi|379773735|gb|AFD19091.1| Polypeptide deformylase [Rickettsia slovaca str. D-CWPP]
Length = 224
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 10/127 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFE---MQAFPHMVWINPEMKILDYKDKV 75
GL+APQ+G+ + I A + + ++KK+ P +WINP K + DK
Sbjct: 84 GLAAPQIGISKCIIIFAVHE------DAELKKWHPDLKDTMPKTIWINPSYKPIGI-DKH 136
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+++ V R++K+ D G AEG+ AR+IQHE+DHL+G +F D
Sbjct: 137 EDYEGCFSVENATGPVARFKKIYYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLD 196
Query: 136 SMLPKSL 142
+ PK +
Sbjct: 197 YVAPKKI 203
>gi|389573305|ref|ZP_10163380.1| peptide deformylase [Bacillus sp. M 2-6]
gi|388427002|gb|EIL84812.1| peptide deformylase [Bacillus sp. M 2-6]
Length = 160
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 18/131 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M D GL+APQ+G+ R+ +V + D + ++ +NPE
Sbjct: 35 MYDTMLELDGVGLAAPQIGISKRIAVVDIGE--------DSGRIDL--------VNPE-- 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
ILD + T +EGC S SL V R V++ D+ GKP + AEG+ AR + HE+DH
Sbjct: 77 ILDVEGSQTDIEGCLSFPSLYGTVERPNYVKVKAFDKKGKPFTIEAEGFLARALLHEIDH 136
Query: 128 LDGLLFTDSML 138
LDG+LFT ++
Sbjct: 137 LDGVLFTSKII 147
>gi|351729838|ref|ZP_08947529.1| peptide deformylase [Acidovorax radicis N35]
Length = 179
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 10/134 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +++ M + M+ + GL+APQ+G+ L+L I E + + + P V
Sbjct: 29 LHLLVRDMFDTMQSVNGAGLAAPQIGVNLQLVIFGS-------GERNPRYPDRPVVPRTV 81
Query: 61 WINPE-MKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+NP M + D +D+ EGC S+ L+ KVPR+ +++ TG D G P T EG+ AR
Sbjct: 82 LLNPVIMPLGDEEDE--DWEGCLSVPGLRGKVPRWSRIRYTGFDPYGDPIDRTVEGFHAR 139
Query: 120 IIQHEMDHLDGLLF 133
++QHE DHL G L+
Sbjct: 140 VVQHECDHLIGKLY 153
>gi|300311484|ref|YP_003775576.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase
[Herbaspirillum seropedicae SmR1]
gi|300074269|gb|ADJ63668.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase protein
[Herbaspirillum seropedicae SmR1]
Length = 178
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 74/131 (56%), Gaps = 11/131 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
++ M M+ + GL+APQ+G+ L+L I F G +++ + P V I
Sbjct: 32 LVDDMFQTMRAVNGAGLAAPQIGVDLQLVIFGF---------GQNQRYPDAPPVPETVLI 82
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP + L +++ EGC S+ ++ VPR+ +++ G+D+ G+P + EG+ AR++Q
Sbjct: 83 NPVLTPLSEQEE-EGWEGCLSVPGMRGVVPRWSRLRYQGVDQNGEPIDRSVEGFHARVVQ 141
Query: 123 HEMDHLDGLLF 133
HE DHL G+L+
Sbjct: 142 HECDHLQGILY 152
>gi|124386084|ref|YP_001029186.1| peptide deformylase [Burkholderia mallei NCTC 10229]
gi|126448140|ref|YP_001080884.1| peptide deformylase [Burkholderia mallei NCTC 10247]
gi|254358101|ref|ZP_04974374.1| peptide deformylase [Burkholderia mallei 2002721280]
gi|124294104|gb|ABN03373.1| peptide deformylase [Burkholderia mallei NCTC 10229]
gi|126241010|gb|ABO04103.1| peptide deformylase [Burkholderia mallei NCTC 10247]
gi|148027228|gb|EDK85249.1| peptide deformylase [Burkholderia mallei 2002721280]
Length = 177
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ M M + GL+APQ+G+ L++ I F E + E P V
Sbjct: 28 LHALVADMFETMHHANGAGLAAPQIGVGLQVIIFGFGSSE--------RYPEAPPVPETV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP ++ L D EGC SL L+ V RYR+V+ +G D+ G AEG+ AR+
Sbjct: 80 LVNPSIEYLP-PDLEEGWEGCLSLPGLRGVVSRYRRVRYSGFDQYGAKLERIAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHEYDHLIGKLY 151
>gi|94987209|ref|YP_595142.1| N-formylmethionyl-tRNA deformylase [Lawsonia intracellularis
PHE/MN1-00]
gi|442556047|ref|YP_007365872.1| polypeptide deformylase [Lawsonia intracellularis N343]
gi|94731458|emb|CAJ54821.1| N-formylmethionyl-tRNA deformylase [Lawsonia intracellularis
PHE/MN1-00]
gi|441493494|gb|AGC50188.1| polypeptide deformylase [Lawsonia intracellularis N343]
Length = 171
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
QM M + GL+APQVG LRL +V PE+ S +V INP++
Sbjct: 33 QMVQTMYDANGIGLAAPQVGYLLRLIVVDVSGPEQKSS-------------LLVLINPKI 79
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
+ + EGC S+ ++KV R+ KV L +D P S+ AEG + +QHE+D
Sbjct: 80 TPVIDSGFIEGEEGCLSVPDYRSKVKRHAKVLLDAIDLDSNPVSFEAEGLLSVCLQHEID 139
Query: 127 HLDGLLFTDSM 137
HLDG LF D +
Sbjct: 140 HLDGKLFIDRV 150
>gi|427402206|ref|ZP_18893278.1| peptide deformylase 2 [Massilia timonae CCUG 45783]
gi|425718979|gb|EKU81920.1| peptide deformylase 2 [Massilia timonae CCUG 45783]
Length = 178
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 11/134 (8%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHM 59
+ +I M M + GL+APQ+G+ L+L I F G +++ + P
Sbjct: 29 LHALIADMFETMHAANGAGLAAPQIGVDLQLVIFGF---------GSNQRYPDAPPVPET 79
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V INP + L + +EGC S+ L+ VPRY +++ G D+ GK AEG+ AR
Sbjct: 80 VLINPVLTPLS-DEMEEGVEGCLSVPGLRGSVPRYTRLRYEGFDQFGKRIVRDAEGFHAR 138
Query: 120 IIQHEMDHLDGLLF 133
++QHE+DHL G+L+
Sbjct: 139 VVQHEVDHLLGILY 152
>gi|385799657|ref|YP_005836061.1| peptide deformylase [Halanaerobium praevalens DSM 2228]
gi|309389021|gb|ADO76901.1| peptide deformylase [Halanaerobium praevalens DSM 2228]
Length = 150
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 19/123 (15%)
Query: 16 DLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
D GL+APQ+G+ R+ +V EG+ ++ INPE I++ + K
Sbjct: 43 DGVGLAAPQIGMLKRIAVV-------DIREGN----------KVILINPE--IIEKEGKA 83
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+ V R K+++ L+ GK ++ AEG+ AR IQHE+DHLDG+LF D
Sbjct: 84 IMEEGCLSIPGETGDVIRAEKIKVKSLNRKGKEVTFLAEGFEARAIQHEIDHLDGILFVD 143
Query: 136 SML 138
++
Sbjct: 144 KII 146
>gi|54297041|ref|YP_123410.1| hypothetical protein lpp1083 [Legionella pneumophila str. Paris]
gi|378776972|ref|YP_005185409.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
ATCC 43290]
gi|53750826|emb|CAH12234.1| hypothetical protein lpp1083 [Legionella pneumophila str. Paris]
gi|364507786|gb|AEW51310.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
ATCC 43290]
Length = 172
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 9/135 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M +M G++APQ+G+ R+ + + +E ++ P
Sbjct: 29 LKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFS--------TEYTKRRKPEYPIPDTA 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP +KIL K+ EGC + + +VPR +++ +G D G + TA G ARI
Sbjct: 81 LINPSLKILS-KEIQNGYEGCLNCGEIMGEVPRAMEIEYSGFDIDGNKITKTASGLEARI 139
Query: 121 IQHEMDHLDGLLFTD 135
+QHE+DHLDG LF D
Sbjct: 140 LQHEIDHLDGFLFLD 154
>gi|383481019|ref|YP_005389934.1| polypeptide deformylase [Rickettsia rhipicephali str.
3-7-female6-CWPP]
gi|378933358|gb|AFC71861.1| polypeptide deformylase [Rickettsia rhipicephali str.
3-7-female6-CWPP]
Length = 224
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 10/127 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFE---MQAFPHMVWINPEMKILDYKDKV 75
GL+APQ+G+ + I A + + ++KK+ P +WINP K + DK
Sbjct: 84 GLAAPQIGISKCIIIFAVHE------DAELKKWRPDLKDTMPKTIWINPSYKPIGI-DKH 136
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+++ V R++K+ D G AEG+ AR+IQHE+DHL+G +F D
Sbjct: 137 EDYEGCFSVENAIGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLD 196
Query: 136 SMLPKSL 142
+ PK +
Sbjct: 197 YVAPKKI 203
>gi|416350345|ref|ZP_11680852.1| peptide deformylase [Clostridium botulinum C str. Stockholm]
gi|338196302|gb|EGO88503.1| peptide deformylase [Clostridium botulinum C str. Stockholm]
Length = 149
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I MK M D GL+APQ+G+ RL ++ D S IN
Sbjct: 31 LIEDMKETMYEADGVGLAAPQIGVLKRLVVIDVGDGPISL------------------IN 72
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE I+ Y+ T EGC SL Q KV R KV L+E G+ EG AR I H
Sbjct: 73 PE--IISYEGSQTDYEGCLSLPGKQGKVTRPYKVIAKALNEKGEEVEINGEGLLARAICH 130
Query: 124 EMDHLDGLLFTDSML 138
E+DHLDG+LF D ++
Sbjct: 131 ELDHLDGVLFMDKVI 145
>gi|67458516|ref|YP_246140.1| polypeptide deformylase [Rickettsia felis URRWXCal2]
gi|67004049|gb|AAY60975.1| Polypeptide deformylase [Rickettsia felis URRWXCal2]
Length = 224
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFE---MQAFPHMVWINPEMKILDYKDKV 75
GL+APQ+ + + I A + EE +KK+ P +WINP K + DK
Sbjct: 84 GLAAPQISISKCIIIFAVHENEE------LKKWRPNLKDTMPKTIWINPSYKPIGI-DKH 136
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+++ V R++K+ D G AEG+ AR+IQHE+DHL+G +F D
Sbjct: 137 EDYEGCFSVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLD 196
Query: 136 SMLPKSL 142
PK +
Sbjct: 197 YAAPKKI 203
>gi|327200563|pdb|3M6R|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
Actinonin
gi|327200564|pdb|3M6R|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
Actinonin
gi|327200565|pdb|3M6R|C Chain C, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
Actinonin
gi|327200566|pdb|3M6R|D Chain D, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
Actinonin
gi|335892380|pdb|3PN6|A Chain A, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) G41m Mutant
gi|335892381|pdb|3PN6|B Chain B, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) G41m Mutant
Length = 193
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 78/146 (53%), Gaps = 16/146 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M +VM + D+ GLSAPQVGL ++L + +P EG +V
Sbjct: 25 LKNLVDAMFDVMYKTDMIGLSAPQVGLNVQLMVF---NPAGEPGEGK----------EIV 71
Query: 61 WINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+NP KI Y DK+ EGC S + A+V R + V++ D TG+ S + AR
Sbjct: 72 LVNP--KIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPAR 129
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECV 145
I QHE DHL+G+LF D M + L+ +
Sbjct: 130 IFQHEYDHLEGVLFFDRMTDQVLDSI 155
>gi|393787558|ref|ZP_10375690.1| peptide deformylase [Bacteroides nordii CL02T12C05]
gi|392658793|gb|EIY52423.1| peptide deformylase [Bacteroides nordii CL02T12C05]
Length = 184
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 71/140 (50%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M D GL+APQ+GLP+R+ + E + E K F +
Sbjct: 27 LKKLIENMFETMVHADGVGLAAPQIGLPIRVVTITLDPLSEDYPE--FKDF------NRA 78
Query: 61 WINPEMKILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+INP IL+ D+V EGC SL + V R ++ + +DE EG+ AR
Sbjct: 79 YINPH--ILEVGGDEVAMEEGCLSLPGIHETVKRGDRIHVKYMDENFVEHDEVVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHLDG +F D + P
Sbjct: 137 VMQHEFDHLDGKMFIDHISP 156
>gi|380695033|ref|ZP_09859892.1| peptide deformylase [Bacteroides faecis MAJ27]
Length = 184
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 13/141 (9%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAF--PH 58
+K +I M M D GL+APQ+GLP+R+ + E + E K F +A+ PH
Sbjct: 27 LKELIANMFETMVHADGVGLAAPQIGLPIRVVTITLDPLSEDYPE--FKDFN-KAYINPH 83
Query: 59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
++ + E +V EGC SL + V R K+++ +DE EG+ A
Sbjct: 84 IIEVGGE--------EVCMEEGCLSLPGIHEAVKRGDKIRVKYMDENFVEHDEVVEGYLA 135
Query: 119 RIIQHEMDHLDGLLFTDSMLP 139
R++QHE DHLDG +F D + P
Sbjct: 136 RVMQHEFDHLDGKMFIDHLSP 156
>gi|167837046|ref|ZP_02463929.1| peptide deformylase [Burkholderia thailandensis MSMB43]
gi|424903692|ref|ZP_18327205.1| peptide deformylase [Burkholderia thailandensis MSMB43]
gi|390931565|gb|EIP88966.1| peptide deformylase [Burkholderia thailandensis MSMB43]
Length = 176
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ M M + GL+APQ+G+ L++ I F + E + E P V
Sbjct: 28 LHALVADMFETMHHANGAGLAAPQIGVGLQVIIFGFGNSE--------RYPEAPPVPETV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP ++ L D EGC S+ L+ V RYR+V+ +G D+ G AEG+ AR+
Sbjct: 80 LVNPGVEYLP-PDMEEGWEGCLSVPGLRGVVSRYRRVRYSGFDQYGAKLERIAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHEYDHLIGKLY 151
>gi|153875918|ref|ZP_02003500.1| Polypeptide deformylase [Beggiatoa sp. PS]
gi|152067618|gb|EDN66500.1| Polypeptide deformylase [Beggiatoa sp. PS]
Length = 174
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 13/122 (10%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
G++APQVG R+ I+ K +++ H++ +NPE I +K
Sbjct: 47 GIAAPQVGYFERIVIIDVS-----------SKPKIKHHGHLILVNPE--ITQWKGFEVGR 93
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
EGC S+ V R +K+ L LDE G + EG+ AR +QHE+DHLDGLLF D ++
Sbjct: 94 EGCMSVPDYTGNVIRAKKIHLMALDENGVQQEYDMEGYEARAVQHEIDHLDGLLFLDRLV 153
Query: 139 PK 140
+
Sbjct: 154 SR 155
>gi|305664803|ref|YP_003861090.1| peptide deformylase [Maribacter sp. HTCC2170]
gi|88707925|gb|EAR00164.1| peptide deformylase [Maribacter sp. HTCC2170]
Length = 196
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 81/147 (55%), Gaps = 6/147 (4%)
Query: 19 GLSAPQVGLPLRLFIV-AFPDPEE-SFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVT 76
GL+APQ+GLP+RLF+V A P E+ SE + K ++ F V+IN +M+ +D V
Sbjct: 45 GLAAPQIGLPVRLFLVDATPFAEDDELSEKERK--DLDGFKK-VFINAKMQEETGEDWVF 101
Query: 77 ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
EGC S+ ++ V R + +T DE K + +G ARIIQHE DH++G+LFTD
Sbjct: 102 N-EGCLSIPEIREDVTRKDTITITYFDENFKKQTENFDGILARIIQHEYDHIEGILFTDK 160
Query: 137 MLPKSLECVCWQDINLQNGLLELRYYM 163
+ + + N+ G + Y M
Sbjct: 161 LSSLKKRLLKGRLANISKGKINADYRM 187
>gi|427701659|ref|YP_007044881.1| peptide deformylase [Cyanobium gracile PCC 6307]
gi|427344827|gb|AFY27540.1| peptide deformylase [Cyanobium gracile PCC 6307]
Length = 164
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ +++ M GL+APQ+G+PLR+ I + + E P V
Sbjct: 29 LAALLDDLRDTMAANAGAGLAAPQIGVPLRVVIFGI--------THNPRYPEAPPIPETV 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L A EGC S+ +A+VPR+R+++ G D G+ EG+ AR+
Sbjct: 81 LINPVLTPLGDGQDDDAWEGCLSVPGWRARVPRWRRLRYRGFDGQGQAFEREVEGFHARV 140
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHE DHLDG+LF D +
Sbjct: 141 VQHECDHLDGVLFPDRV 157
>gi|349699217|ref|ZP_08900846.1| peptide deformylase [Gluconacetobacter europaeus LMG 18494]
Length = 176
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M M GL+APQV LRLF+ PD + S GD + A
Sbjct: 29 VRTLVADMIETMLDAGGVGLAAPQVHQGLRLFVYRVPD---TRSTGDDDPPRLPA----A 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ +D D V +EGC S+ L+ VPRYR++ G++ G+ A G+ A +
Sbjct: 82 LINPVLEPVD-DDMVDRMEGCLSIPGLRGWVPRYRRIAWRGMNAQGQETHGIATGFLANV 140
Query: 121 IQHEMDHLDGLLF 133
QHE DHL+G+L+
Sbjct: 141 FQHEYDHLNGILY 153
>gi|427386334|ref|ZP_18882531.1| peptide deformylase [Bacteroides oleiciplenus YIT 12058]
gi|425726374|gb|EKU89239.1| peptide deformylase [Bacteroides oleiciplenus YIT 12058]
Length = 184
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M+ + GL+APQVGLP+R+ +V E + E K F
Sbjct: 27 LKELIANMFETMEHAEGVGLAAPQVGLPIRVVVVDLDVLSEDYPE--YKNFRK------A 78
Query: 61 WINPEMKILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+INP IL+ ++V+ EGC SL + V R K+ +T +DE EG+ AR
Sbjct: 79 YINPH--ILEVSGEEVSMEEGCLSLPGIHESVKRGNKIHVTYMDENMVEHDEIVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHL+G +F D + P
Sbjct: 137 VMQHEFDHLEGKMFIDHLSP 156
>gi|357405175|ref|YP_004917099.1| peptide deformylase [Methylomicrobium alcaliphilum 20Z]
gi|351717840|emb|CCE23505.1| Peptide deformylase 2 [Methylomicrobium alcaliphilum 20Z]
Length = 180
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 9/134 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M+ + + GL+APQ+G LR+ IVA S + + V +N
Sbjct: 37 VIAAMQATLASTEGVGLAAPQIGESLRIMIVA--------SRSTPRYPKAPTMDPTVMVN 88
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE +L + EGC S+ ++A VPR+RK+ + L++ G + E + AR+ QH
Sbjct: 89 PEFNVLS-NEIAKDWEGCLSIPGIRALVPRFRKISVCYLNQQGVSQTLILEDFVARVFQH 147
Query: 124 EMDHLDGLLFTDSM 137
E DHLDGL++ D +
Sbjct: 148 EYDHLDGLVYLDRV 161
>gi|71907756|ref|YP_285343.1| formylmethionine deformylase [Dechloromonas aromatica RCB]
gi|71847377|gb|AAZ46873.1| Formylmethionine deformylase [Dechloromonas aromatica RCB]
Length = 204
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M + M+ GL+APQ+G+ L++ I F E + + +A P V
Sbjct: 57 LRALIEDMFDSMEAAGGVGLAAPQIGIGLQMVIFGFEKSE--------RYPDAEAVPLTV 108
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + + ++++ EGC S+ L+ +VPR+ +++ G D G P T EG+ AR+
Sbjct: 109 LINPLITPVGDEEEL-GWEGCLSVPGLRGEVPRHTRIRYQGFDPEGTPIDRTVEGFHARV 167
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 168 VQHECDHLIGRLY 180
>gi|162148854|ref|YP_001603315.1| peptide deformylase 2 [Gluconacetobacter diazotrophicus PAl 5]
gi|209545397|ref|YP_002277626.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
gi|161787431|emb|CAP57026.1| putative peptide deformylase 2 [Gluconacetobacter diazotrophicus
PAl 5]
gi|209533074|gb|ACI53011.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
Length = 176
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 8/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQV + LRLF+ + P E + GD E V IN
Sbjct: 32 LIDDMIETMEDARGAGLAAPQVHVSLRLFV--YRVPAERSAGGDDPPRETS-----VLIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + ++D + EGC S+ L+ VPR+ ++ +GLD G+ A G+ A ++QH
Sbjct: 85 PVLSLVD-DEMALRPEGCLSIPGLRGMVPRHVRIAYSGLDRAGQAVQGVASGFLANVLQH 143
Query: 124 EMDHLDGLLF 133
E DHLDG+L+
Sbjct: 144 EYDHLDGILY 153
>gi|114566758|ref|YP_753912.1| peptide deformylase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|122318216|sp|Q0AXL3.1|DEF_SYNWW RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|114337693|gb|ABI68541.1| peptide deformylase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 152
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 20/137 (14%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
M++ M D GL+APQ+G+P R+ +V D E+ E INPE
Sbjct: 34 NMRDTMYAADGVGLAAPQIGIPKRMIVV---DIGENLLE---------------LINPE- 74
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
IL + EGC S+ + +V R +KV + GLD G+ ++ A A+++QHE+D
Sbjct: 75 -ILKQEGNQLGSEGCLSVPGIVGRVNRAKKVLVKGLDRNGQELNFAAVDLLAKVLQHEID 133
Query: 127 HLDGLLFTDSMLPKSLE 143
HL+G+LF D + +E
Sbjct: 134 HLEGILFIDKAIETRIE 150
>gi|257066166|ref|YP_003152422.1| peptide deformylase [Anaerococcus prevotii DSM 20548]
gi|256798046|gb|ACV28701.1| peptide deformylase [Anaerococcus prevotii DSM 20548]
Length = 158
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 17/138 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K+++ M + M D GL+APQVG+ R+ +V DP + + G +K
Sbjct: 28 IKVLLDDMADTMYEADGVGLAAPQVGILKRIIVV---DPHDDTT-GLVK----------- 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NPE I++ + +EGC S+ + A V R +++ LDE G W A G+ A I
Sbjct: 73 LVNPE--IIESDGEQIGIEGCLSIPNFNATVKRPEHLKVKYLDEEGNEKIWDAHGFPAEI 130
Query: 121 IQHEMDHLDGLLFTDSML 138
+ HE+DHLDG+LF D +
Sbjct: 131 LSHEIDHLDGILFRDKAI 148
>gi|398848204|ref|ZP_10605032.1| peptide deformylase [Pseudomonas sp. GM84]
gi|398249418|gb|EJN34806.1| peptide deformylase [Pseudomonas sp. GM84]
Length = 178
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M+ GL+APQ+G+ L+L I F E + + + P +
Sbjct: 30 LQQLIDDMFETMRHVGGVGLAAPQIGIDLQLVIFGFERSE--------RYPDAEPVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L + + EGC S+ L+ VPRY+ + G+D G+P + A+G+ AR+
Sbjct: 82 LINPVITPLSTEIE-DGWEGCLSVPGLRGVVPRYKHISYAGIDPQGQPINRFADGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|421169393|ref|ZP_15627412.1| peptide deformylase [Pseudomonas aeruginosa ATCC 700888]
gi|404526522|gb|EKA36732.1| peptide deformylase [Pseudomonas aeruginosa ATCC 700888]
Length = 179
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ L+L I F E + + A P +
Sbjct: 30 LQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIFGFERSE--------RYPDAPAVPPTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + LD + EGC S+ L+ V R+R+++ GLD G+P + EG+ AR+
Sbjct: 82 LLNPRITPLD-DEMEEGWEGCLSVPGLRGAVSRHRRIRYQGLDPQGQPVDRSVEGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|104782988|ref|YP_609486.1| peptide deformylase [Pseudomonas entomophila L48]
gi|95111975|emb|CAK16702.1| peptide deformylase 2 [Pseudomonas entomophila L48]
Length = 178
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ L+L I F E + + +A P +
Sbjct: 30 LRQLIDDMFETMAHVGGVGLAAPQIGIDLQLVIFGFERSE--------RYPDAEAVPRTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + + + + EGC S+ L+ VPRY+ + TG+D G P A+G+ AR+
Sbjct: 82 LLNPVITPMSTEVE-DGWEGCLSVPGLRGVVPRYKHISYTGVDPDGNPIDRFADGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|116049053|ref|YP_792145.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|296390510|ref|ZP_06879985.1| peptide deformylase [Pseudomonas aeruginosa PAb1]
gi|313106089|ref|ZP_07792346.1| putative peptide deformylase [Pseudomonas aeruginosa 39016]
gi|386064932|ref|YP_005980236.1| peptide deformylase [Pseudomonas aeruginosa NCGM2.S1]
gi|392985398|ref|YP_006483985.1| peptide deformylase [Pseudomonas aeruginosa DK2]
gi|416873167|ref|ZP_11917291.1| peptide deformylase [Pseudomonas aeruginosa 152504]
gi|419752273|ref|ZP_14278681.1| peptide deformylase [Pseudomonas aeruginosa PADK2_CF510]
gi|421175822|ref|ZP_15633494.1| peptide deformylase [Pseudomonas aeruginosa CI27]
gi|115584274|gb|ABJ10289.1| probable peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|310878848|gb|EFQ37442.1| putative peptide deformylase [Pseudomonas aeruginosa 39016]
gi|334845303|gb|EGM23867.1| peptide deformylase [Pseudomonas aeruginosa 152504]
gi|348033491|dbj|BAK88851.1| peptide deformylase [Pseudomonas aeruginosa NCGM2.S1]
gi|384401283|gb|EIE47638.1| peptide deformylase [Pseudomonas aeruginosa PADK2_CF510]
gi|392320903|gb|AFM66283.1| peptide deformylase [Pseudomonas aeruginosa DK2]
gi|404531600|gb|EKA41540.1| peptide deformylase [Pseudomonas aeruginosa CI27]
Length = 179
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ L+L I F E + + A P +
Sbjct: 30 LQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIFGFERSE--------RYPDAPAVPPTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + LD + EGC S+ L+ V R+R+++ GLD G+P + EG+ AR+
Sbjct: 82 LLNPRITPLD-DEMEEGWEGCLSVPGLRGAVSRHRRIRYQGLDPQGQPIDRSVEGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|150006541|ref|YP_001301285.1| peptide deformylase [Bacteroides vulgatus ATCC 8482]
gi|294778840|ref|ZP_06744257.1| peptide deformylase [Bacteroides vulgatus PC510]
gi|319642942|ref|ZP_07997578.1| peptide deformylase [Bacteroides sp. 3_1_40A]
gi|158513745|sp|A6L7J9.1|DEF_BACV8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|149934965|gb|ABR41663.1| peptide deformylase [Bacteroides vulgatus ATCC 8482]
gi|294447293|gb|EFG15876.1| peptide deformylase [Bacteroides vulgatus PC510]
gi|317385490|gb|EFV66433.1| peptide deformylase [Bacteroides sp. 3_1_40A]
Length = 184
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 11/138 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAF-PHM 59
+K +I M M R D GL+APQ+GLP+R+ + + E K F PH+
Sbjct: 27 LKELIANMFETMNRADGVGLAAPQIGLPIRVVTIDLDVMSDDLPE--FKDFRRAYINPHI 84
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+ + E +V+ EGC SL + V R ++ +T LDE K EG+ AR
Sbjct: 85 LEVGGE--------EVSMEEGCLSLPGIHEAVKRPDRIHVTYLDEELKEHDEWVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSM 137
++QHE DHLDG +F D +
Sbjct: 137 VMQHEFDHLDGKMFIDHL 154
>gi|423348136|ref|ZP_17325821.1| peptide deformylase [Parabacteroides merdae CL03T12C32]
gi|409215098|gb|EKN08105.1| peptide deformylase [Parabacteroides merdae CL03T12C32]
Length = 185
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 9/137 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M M D GL+APQVGL LRL ++ + F E K F+
Sbjct: 27 LKQLVANMFETMYNADGVGLAAPQVGLSLRLLVIDADVMGDDFPE--CKGFKR------A 78
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + + +++V EGC SL + KV R KV++ LDE K T EG+AAR+
Sbjct: 79 MINP-VFLEKSEEEVLMEEGCLSLPGVHEKVARSVKVRVKYLDEDLKEHEETVEGFAARV 137
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHE +HL+G +F D++
Sbjct: 138 VQHECEHLEGHVFIDNI 154
>gi|407770679|ref|ZP_11118046.1| peptide deformylase [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407286253|gb|EKF11742.1| peptide deformylase [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 200
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I MK+ MK GL+APQV + + P +S D + P V IN
Sbjct: 32 LIADMKDTMKDAGGVGLAAPQVFQSKAIMVFYVPAFRKSDDPDDAE------VPLSVLIN 85
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE++ + + V EGC S+ LQ VPR+ K++ GLDE GK A G+ AR++QH
Sbjct: 86 PEIEAIG-DEIVDGWEGCLSIPGLQGVVPRWNKIRYRGLDEYGKDVERIAGGFHARVVQH 144
Query: 124 EMDHLDGLLFTDSM 137
E DHL G+++ + M
Sbjct: 145 EYDHLIGVMYPERM 158
>gi|347536484|ref|YP_004843909.1| peptide deformylase [Flavobacterium branchiophilum FL-15]
gi|345529642|emb|CCB69672.1| Peptide deformylase [Flavobacterium branchiophilum FL-15]
Length = 195
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M + M GL+APQ+GLP+RLF+V +S + D +K +++ F
Sbjct: 27 LKELIANMYDTMYNAYGIGLAAPQIGLPIRLFVVDTEPFSDSENLSDEEKIKLKDFKQ-T 85
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+IN +M + + ++ EGC S+ ++ V R K+ + LD+ + T +G AR+
Sbjct: 86 FINAKM-LKEEGEEWGFNEGCLSIPDVREDVYRKEKITIEFLDDNFETKVETFDGMIARV 144
Query: 121 IQHEMDHLDGLLFTD 135
IQHE DH++G+LFTD
Sbjct: 145 IQHEYDHIEGILFTD 159
>gi|218892912|ref|YP_002441781.1| peptide deformylase [Pseudomonas aeruginosa LESB58]
gi|254234257|ref|ZP_04927580.1| hypothetical protein PACG_00094 [Pseudomonas aeruginosa C3719]
gi|416853568|ref|ZP_11910209.1| peptide deformylase [Pseudomonas aeruginosa 138244]
gi|126166188|gb|EAZ51699.1| hypothetical protein PACG_00094 [Pseudomonas aeruginosa C3719]
gi|218773140|emb|CAW28952.1| probable peptide deformylase [Pseudomonas aeruginosa LESB58]
gi|334845027|gb|EGM23594.1| peptide deformylase [Pseudomonas aeruginosa 138244]
gi|453048272|gb|EME95985.1| peptide deformylase [Pseudomonas aeruginosa PA21_ST175]
Length = 179
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ L+L I F E + + A P +
Sbjct: 30 LQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIFGFERSE--------RYPDAPAVPPTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + LD + EGC S+ L+ V R+R+++ GLD G+P + EG+ AR+
Sbjct: 82 LLNPRITPLD-DEMEEGWEGCLSVPGLRGAVSRHRRIRYQGLDPQGQPIDRSVEGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|54309245|ref|YP_130265.1| polypeptide deformylase [Photobacterium profundum SS9]
gi|46913677|emb|CAG20463.1| hypothetical polypeptide deformylase [Photobacterium profundum SS9]
Length = 175
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 9/128 (7%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
++ +M G++APQVG PLR FIVA P + + + + + P ++W + EM+
Sbjct: 37 LEQIMLSHQGVGIAAPQVGQPLRAFIVA-SRPNDRYPHAPLMEPTIMINPELLWQSEEME 95
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
KD EGC S+ ++AKV RY +++ L+ +G G+ ARI QHE+DH
Sbjct: 96 ----KD----WEGCLSIPGIRAKVNRYTHIRVRYLNASGDVIETEFTGFIARIFQHELDH 147
Query: 128 LDGLLFTD 135
L+G++F D
Sbjct: 148 LNGIVFLD 155
>gi|160883802|ref|ZP_02064805.1| hypothetical protein BACOVA_01774 [Bacteroides ovatus ATCC 8483]
gi|293372830|ref|ZP_06619208.1| peptide deformylase [Bacteroides ovatus SD CMC 3f]
gi|299149164|ref|ZP_07042225.1| peptide deformylase [Bacteroides sp. 3_1_23]
gi|383112591|ref|ZP_09933383.1| peptide deformylase [Bacteroides sp. D2]
gi|423287417|ref|ZP_17266268.1| peptide deformylase [Bacteroides ovatus CL02T12C04]
gi|156110887|gb|EDO12632.1| putative peptide deformylase [Bacteroides ovatus ATCC 8483]
gi|292632205|gb|EFF50805.1| peptide deformylase [Bacteroides ovatus SD CMC 3f]
gi|298512831|gb|EFI36719.1| peptide deformylase [Bacteroides sp. 3_1_23]
gi|313693001|gb|EFS29836.1| peptide deformylase [Bacteroides sp. D2]
gi|392672532|gb|EIY65999.1| peptide deformylase [Bacteroides ovatus CL02T12C04]
Length = 184
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M D GL+APQ+GLP+R+ + E + E K F +
Sbjct: 27 LKELIENMFETMVHADGVGLAAPQIGLPIRVVTITLDPLSEEYPE--FKDF------NKA 78
Query: 61 WINPEMKILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+INP IL+ ++V+ EGC SL + V R K+++ +DE EG+ AR
Sbjct: 79 YINPH--ILEVGGEEVSMEEGCLSLPGIHETVKRGDKIRVKYMDENFVEHEEEVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHLDG +F D + P
Sbjct: 137 VMQHEFDHLDGKMFIDHISP 156
>gi|418583409|ref|ZP_13147478.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P1]
gi|418590357|ref|ZP_13154267.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P2]
gi|421181890|ref|ZP_15639376.1| peptide deformylase [Pseudomonas aeruginosa E2]
gi|375047017|gb|EHS39566.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P1]
gi|375050692|gb|EHS43170.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P2]
gi|404542920|gb|EKA52225.1| peptide deformylase [Pseudomonas aeruginosa E2]
Length = 179
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ L+L I F E + + A P +
Sbjct: 30 LQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIFGFERSE--------RYPDAPAVPPTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + LD + EGC S+ L+ V R+R+++ GLD G+P + EG+ AR+
Sbjct: 82 LLNPRVTPLD-DEMEEGWEGCLSVPGLRGAVSRHRRIRYQGLDPQGQPIDRSVEGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|320333260|ref|YP_004169971.1| peptide deformylase [Deinococcus maricopensis DSM 21211]
gi|319754549|gb|ADV66306.1| Peptide deformylase [Deinococcus maricopensis DSM 21211]
Length = 214
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 71/121 (58%), Gaps = 5/121 (4%)
Query: 19 GLSAPQVGLPLRLFIVA-FPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVGL +R+F+ A + D E+ E ++ ++ F V INP +++L+ K
Sbjct: 62 GLAAPQVGLGVRMFVAAEYADDEDEGQETPLRSRVLREF---VAINPVLEVLNKKKDSHY 118
Query: 78 LEGCASLKSL-QAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
EGC S+ + + V R R V++T L+ G+ AE + AR+ QHE+DHLDG F D
Sbjct: 119 QEGCLSIPGIYEEGVKRDRAVRMTYLNLDGQRKVVEAEDYLARVFQHEVDHLDGRFFLDR 178
Query: 137 M 137
+
Sbjct: 179 L 179
>gi|299067454|emb|CBJ38653.1| Peptide deformylase [Ralstonia solanacearum CMR15]
Length = 177
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M GL+APQ+G+ L++ I F D + + + A P V
Sbjct: 28 LTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGF-DRNDRYPDA-------PAVPKTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ L EGC S+ L+ VPRY +V+ TG D+ G AEG+ AR+
Sbjct: 80 LINPTIEPLS-DTMEDGWEGCLSVPGLRGVVPRYTRVRYTGYDQHGHAIDRIAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 139 VQHECDHLQGILY 151
>gi|415908398|ref|ZP_11552971.1| Peptide deformylase [Herbaspirillum frisingense GSF30]
gi|407762793|gb|EKF71577.1| Peptide deformylase [Herbaspirillum frisingense GSF30]
Length = 178
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 74/131 (56%), Gaps = 11/131 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
++ M M+ + GL+APQ+G+ L+L I F G +++ + A P V I
Sbjct: 32 LVDDMFETMRAVNGAGLAAPQIGIDLQLVIFGF---------GRNQRYPDAPAVPETVLI 82
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP + L +++ EGC S+ ++ VPR+ +++ G+D+ GK T EG+ AR++Q
Sbjct: 83 NPILTPLSDQEE-EGWEGCLSVPGMRGVVPRWSRLRYQGVDQNGKLIDRTVEGFHARVVQ 141
Query: 123 HEMDHLDGLLF 133
HE DHL G+L+
Sbjct: 142 HECDHLQGILY 152
>gi|83719851|ref|YP_442547.1| peptide deformylase [Burkholderia thailandensis E264]
gi|167581474|ref|ZP_02374348.1| peptide deformylase [Burkholderia thailandensis TXDOH]
gi|167619583|ref|ZP_02388214.1| peptide deformylase [Burkholderia thailandensis Bt4]
gi|257138756|ref|ZP_05587018.1| peptide deformylase [Burkholderia thailandensis E264]
gi|83653676|gb|ABC37739.1| polypeptide deformylase [Burkholderia thailandensis E264]
Length = 177
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ M M + GL+APQ+G+ L++ I F E + E P V
Sbjct: 28 LHALVADMFETMHHANGAGLAAPQIGVGLQVIIFGFGSSE--------RYPEAPPVPETV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP ++ L D EGC S+ L+ V RYR+V+ +G D+ G AEG+ AR+
Sbjct: 80 LVNPSVEYLP-PDMEDGWEGCLSVPGLRGVVSRYRRVRYSGFDQYGAKLERIAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHEYDHLIGKLY 151
>gi|255692008|ref|ZP_05415683.1| peptide deformylase [Bacteroides finegoldii DSM 17565]
gi|260622254|gb|EEX45125.1| peptide deformylase [Bacteroides finegoldii DSM 17565]
Length = 184
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M D GL+APQ+GLP+R+ + E + E K F +
Sbjct: 27 LKELIANMFETMVHADGVGLAAPQIGLPIRVVTITLDPLSEDYPE--FKDF------NKA 78
Query: 61 WINPEMKILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+INP IL+ ++V+ EGC SL + V R K+++ +DE EG+ AR
Sbjct: 79 YINPH--ILEVGGEEVSMEEGCLSLPGIHETVKRGDKIRVKYMDENFVEYEEVVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHLDG +F D + P
Sbjct: 137 VMQHEFDHLDGKMFIDHISP 156
>gi|150020729|ref|YP_001306083.1| peptide deformylase [Thermosipho melanesiensis BI429]
gi|149793250|gb|ABR30698.1| peptide deformylase [Thermosipho melanesiensis BI429]
Length = 165
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 70/128 (54%), Gaps = 20/128 (15%)
Query: 16 DLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
D GL+APQVGL LR F++ +G F +NPE+ I ++K
Sbjct: 39 DGVGLAAPQVGLSLRFFVM---------DDGSGPLF---------IVNPEI-IAHSEEKE 79
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC SL + V RY+ V+L DE GK + EG++ARI+QHE DHLDG+LF D
Sbjct: 80 IGEEGCLSLPGIFENVERYKWVKLKFQDEYGKVQTRLFEGYSARIVQHERDHLDGILFID 139
Query: 136 SMLPKSLE 143
LP +++
Sbjct: 140 H-LPNAVK 146
>gi|345521561|ref|ZP_08800884.1| peptide deformylase [Bacteroides sp. 4_3_47FAA]
gi|423314010|ref|ZP_17291945.1| peptide deformylase [Bacteroides vulgatus CL09T03C04]
gi|254834351|gb|EET14660.1| peptide deformylase [Bacteroides sp. 4_3_47FAA]
gi|392683608|gb|EIY76942.1| peptide deformylase [Bacteroides vulgatus CL09T03C04]
Length = 184
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAF-PHM 59
+K +I M M R D GL+APQ+GLP+R+ + + E K F PH+
Sbjct: 27 LKELIANMFETMNRADGVGLAAPQIGLPIRVVTIDLDVMSDDLPE--FKDFRRAYINPHI 84
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDET-GKPDSWTAEGWAA 118
+ + E +V+ EGC SL + V R ++ +T LDE + D W EG+ A
Sbjct: 85 LEVGGE--------EVSMEEGCLSLPGIHETVKRPDRIHVTYLDEELNEHDEWV-EGYLA 135
Query: 119 RIIQHEMDHLDGLLFTDSM 137
R++QHE DHLDG +F D +
Sbjct: 136 RVMQHEFDHLDGKMFIDHL 154
>gi|298207815|ref|YP_003715994.1| peptide deformylase [Croceibacter atlanticus HTCC2559]
gi|83850453|gb|EAP88321.1| peptide deformylase [Croceibacter atlanticus HTCC2559]
Length = 196
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 81/148 (54%), Gaps = 8/148 (5%)
Query: 19 GLSAPQVGLPLRLFIV---AFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
GL+APQVGLP+RLF++ F D EE E ++ ++ + +INP + + D+
Sbjct: 45 GLAAPQVGLPIRLFVIDPSPFADDEELTEE---ERKQLTGLKKL-FINPVI-TEETGDEW 99
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+ ++ V R + + +DE K + T G AAR+IQHE DH++G+LFTD
Sbjct: 100 AFSEGCLSIPDVREDVFRQPDITIEYVDENFKAHTETYTGIAARVIQHEYDHIEGILFTD 159
Query: 136 SMLPKSLECVCWQDINLQNGLLELRYYM 163
+ + + N+ G +++ Y M
Sbjct: 160 KLSSLKKRLIKGKLNNISKGKVDVDYRM 187
>gi|358635767|dbj|BAL23064.1| peptide deformylase [Azoarcus sp. KH32C]
Length = 178
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M GL+APQ+G+ L++ I F E + + P +
Sbjct: 29 LDALIGDMFDTMAAAGGVGLAAPQIGVGLQVVIFGFERSE--------RYPDAPPVPRTI 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + +LD ++ EGC S+ L+ VPR+R+++ G D G P AEG+ AR+
Sbjct: 81 LVNPVITVLDETEE-EGWEGCLSVPGLRGVVPRHRRIRYQGFDPAGNPIDREAEGFHARV 139
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL+G+LF
Sbjct: 140 VQHECDHLNGVLF 152
>gi|444306286|ref|ZP_21142055.1| peptide deformylase [Arthrobacter sp. SJCon]
gi|443481433|gb|ELT44359.1| peptide deformylase [Arthrobacter sp. SJCon]
Length = 200
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 21/135 (15%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M M+ D GL+APQVG+ R+F ++ G ++ H+V N
Sbjct: 31 LVADMTETMEDVDGAGLAAPQVGVSQRVF---------TYRIGGVEG-------HIV--N 72
Query: 64 PEMK-ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
P ++ DY++ +EGC S+ L V R+R ++TG+D G P S AEG AR Q
Sbjct: 73 PVLENSTDYQED--EVEGCLSIPGLGFPVRRFRATRVTGVDIHGNPVSVDAEGMLARCFQ 130
Query: 123 HEMDHLDGLLFTDSM 137
HE DHLDG+L+TD +
Sbjct: 131 HENDHLDGILYTDRL 145
>gi|374369436|ref|ZP_09627466.1| peptide deformylase [Cupriavidus basilensis OR16]
gi|373099004|gb|EHP40095.1| peptide deformylase [Cupriavidus basilensis OR16]
Length = 177
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+++++ M + M + GL+APQ+G+ L++ I F + + + + P V
Sbjct: 28 LRVLVDDMFDTMDHANGAGLAAPQIGVDLQVVIFGF--------DRNPRYPDAPTVPKTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE+ L +++ A EGC S+ L+ VPR+ +++ TG D G AE + AR+
Sbjct: 80 LINPELTPLG-EEQDEAWEGCLSVPGLRGVVPRFTRLKYTGFDVMGARIERVAEDFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 139 VQHECDHLQGILY 151
>gi|187928362|ref|YP_001898849.1| peptide deformylase [Ralstonia pickettii 12J]
gi|187725252|gb|ACD26417.1| peptide deformylase [Ralstonia pickettii 12J]
Length = 177
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M GL+APQ+G+ L++ I F D + + + A P V
Sbjct: 28 LTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGF-DRNDRYPDA-------PAVPKTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ L + EGC S+ L+ VPRY +++ TG D+ G AEG+ AR+
Sbjct: 80 LINPTIEPLS-DEMEEGWEGCLSVPGLRGVVPRYTRLRYTGFDQHGHAIDRIAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 139 VQHECDHLQGVLY 151
>gi|315635057|ref|ZP_07890338.1| peptide deformylase [Aggregatibacter segnis ATCC 33393]
gi|315476319|gb|EFU67070.1| peptide deformylase [Aggregatibacter segnis ATCC 33393]
Length = 170
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 17/136 (12%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
II M + M + + GL+APQV + R+ + EGD + +V IN
Sbjct: 31 IIDDMFDTMYQEEGIGLAAPQVDILQRIITIDI--------EGDKQN-------QLVLIN 75
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE ILD + + EGC S+ +A VPR KV + LD GK + A+G A IQH
Sbjct: 76 PE--ILDAEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRDGKEFTLKADGLLAICIQH 133
Query: 124 EMDHLDGLLFTDSMLP 139
E+DHL+G+LF D + P
Sbjct: 134 EIDHLNGILFVDYLSP 149
>gi|403527401|ref|YP_006662288.1| peptide deformylase [Arthrobacter sp. Rue61a]
gi|403229828|gb|AFR29250.1| peptide deformylase [Arthrobacter sp. Rue61a]
Length = 224
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 10/147 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFP---DPEESFSEGDIKKFEMQAFP 57
+ + +MK VM GL+APQ+G+PL+L ++ DPE + ++ E F
Sbjct: 61 LAAFLERMKEVMHDAPGVGLAAPQLGIPLQLAVLEDKYEVDPESAA----VRHREPLEF- 115
Query: 58 HMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWA 117
+NP+ + L + + EGC S+ QA V R+R V+L + G+P GW
Sbjct: 116 -FAIVNPQYRPLG-TETASFFEGCLSVSGYQAVVTRHRNVELRYTNPAGEPVEEWFSGWQ 173
Query: 118 ARIIQHEMDHLDGLLFTDSMLPKSLEC 144
ARI+QHE DHL G+L+ D +SL
Sbjct: 174 ARIVQHETDHLRGILYLDRAELRSLSS 200
>gi|15835247|ref|NP_297006.1| peptide deformylase [Chlamydia muridarum Nigg]
gi|270285419|ref|ZP_06194813.1| peptide deformylase [Chlamydia muridarum Nigg]
gi|270289433|ref|ZP_06195735.1| peptide deformylase [Chlamydia muridarum Weiss]
gi|301336816|ref|ZP_07225018.1| peptide deformylase [Chlamydia muridarum MopnTet14]
gi|13878461|sp|Q9PK41.1|DEF_CHLMU RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|7190671|gb|AAF39461.1| polypeptide deformylase [Chlamydia muridarum Nigg]
Length = 181
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 12/142 (8%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++L M M + GL+APQVG + LFI+ E+ +G++ + FP V
Sbjct: 27 LRQLVLDMSETMTFYKGVGLAAPQVGHSVALFIMGV---EKELDDGELIFCD---FPK-V 79
Query: 61 WINPEMKILDYKDK--VTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
+INP ++ K + V EGC S+ L+ +V R K+ +T + G+P S T EG+ A
Sbjct: 80 FINP---VITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVTAKNLDGQPFSMTLEGFLA 136
Query: 119 RIIQHEMDHLDGLLFTDSMLPK 140
RI+ HE DHL G+L+ D M K
Sbjct: 137 RIVMHETDHLHGVLYIDRMSDK 158
>gi|384098422|ref|ZP_09999538.1| peptide deformylase [Imtechella halotolerans K1]
gi|383835679|gb|EID75102.1| peptide deformylase [Imtechella halotolerans K1]
Length = 196
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 88/166 (53%), Gaps = 8/166 (4%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPE-ESFSEGDIKKFEMQAFPH 58
K +I M + M GL+APQ+GL LRLF++ A P E E SE + K E+Q F
Sbjct: 27 FKELIQNMMDTMYGAYGVGLAAPQIGLALRLFVIDASPFAEDEDLSEEEQK--ELQGFKK 84
Query: 59 MVWINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWA 117
V++NP IL+ A EGC S+ ++ V R V++ DE + T G A
Sbjct: 85 -VFVNP--IILEESGNEWAFNEGCLSIPDIREDVFRKETVRIRYQDENFQTFEETYSGLA 141
Query: 118 ARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
AR+IQHE DH++G+LFTD + + + N+ G +++ Y M
Sbjct: 142 ARVIQHEYDHIEGVLFTDKLSGLKKRLIKGKLNNISKGKVDVDYRM 187
>gi|345870270|ref|ZP_08822224.1| Peptide deformylase [Thiorhodococcus drewsii AZ1]
gi|343922212|gb|EGV32917.1| Peptide deformylase [Thiorhodococcus drewsii AZ1]
Length = 167
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 13/122 (10%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
G++APQVG P R+ I+ ++ + G H+V +NPE I+ ++ T
Sbjct: 47 GIAAPQVGHPQRIVILDVSSRPKTPNHG-----------HLVLVNPE--IVHWEGYATGR 93
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
EGC S+ V R ++L D G+ + EG+ AR +QHE+DHLDGLLF D ++
Sbjct: 94 EGCLSVPDYTGNVIRATHIRLKAQDADGRESEFEMEGFEARAVQHELDHLDGLLFVDRVV 153
Query: 139 PK 140
+
Sbjct: 154 SR 155
>gi|325283926|ref|YP_004256467.1| Peptide deformylase [Deinococcus proteolyticus MRP]
gi|324315735|gb|ADY26850.1| Peptide deformylase [Deinococcus proteolyticus MRP]
Length = 220
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQVGL +R+F+ D E +EG + + V +NP++ +++ K +
Sbjct: 59 GLAAPQVGLGVRMFVAVEYDDNEEENEGKETPLKSRVLREYVMLNPKLTVINKKKDKSET 118
Query: 79 EGCASLKSL-QAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + + VPR R V++ D G+ + AE + AR+ QHE DHLDG LF D +
Sbjct: 119 EGCLSIPDIYEEGVPRARAVRVDYTDLEGQAQTVEAEDYLARVFQHENDHLDGKLFLDHL 178
>gi|309782141|ref|ZP_07676871.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
gi|404377835|ref|ZP_10982935.1| peptide deformylase 2 [Ralstonia sp. 5_2_56FAA]
gi|308919207|gb|EFP64874.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
gi|348612981|gb|EGY62584.1| peptide deformylase 2 [Ralstonia sp. 5_2_56FAA]
Length = 177
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M GL+APQ+G+ L++ I F D + + + A P V
Sbjct: 28 LTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGF-DRNDRYPDA-------PAVPKTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ L + EGC S+ L+ VPRY +++ TG D+ G AEG+ AR+
Sbjct: 80 LINPTVEPLS-DEMEEGWEGCLSVPGLRGVVPRYTRLRYTGFDQHGHAIDRIAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 139 VQHECDHLQGVLY 151
>gi|393783468|ref|ZP_10371641.1| peptide deformylase [Bacteroides salyersiae CL02T12C01]
gi|392668901|gb|EIY62394.1| peptide deformylase [Bacteroides salyersiae CL02T12C01]
Length = 184
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M D GL+APQ+GLP+R+ + + F E K F +
Sbjct: 27 LKKLIENMFETMVHADGVGLAAPQIGLPIRVVTITLDPLSDEFPE--FKDF------NRA 78
Query: 61 WINPEMKILDYKDKVTALE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+INP IL+ + A+E GC SL + V R ++ + +DE EG+ AR
Sbjct: 79 YINPH--ILEVGGEEVAMEEGCLSLPGIHETVKRGNRIHVKYMDENFVEHDEVVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHLDG +F D + P
Sbjct: 137 VMQHEFDHLDGKMFIDHISP 156
>gi|293603522|ref|ZP_06685943.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
gi|292817958|gb|EFF77018.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
Length = 177
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M M GL+APQ+G+ L+L I F D E + + A P +
Sbjct: 28 LHALIADMFETMAAAQGVGLAAPQIGVDLQLVIFGF-DRNERYPDA-------PAVPQTI 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP + L + EGC S+ L+ +VPRYR ++ +G D GK AEG+ AR+
Sbjct: 80 LCNPVITPLS-DEMEDGWEGCLSVPGLRGQVPRYRHIRYSGFDPYGKLIEREAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHECDHLIGRLY 151
>gi|53719772|ref|YP_108758.1| peptide deformylase [Burkholderia pseudomallei K96243]
gi|53723743|ref|YP_103199.1| peptide deformylase [Burkholderia mallei ATCC 23344]
gi|76809016|ref|YP_333979.1| peptide deformylase [Burkholderia pseudomallei 1710b]
gi|121601445|ref|YP_993377.1| peptide deformylase [Burkholderia mallei SAVP1]
gi|126440852|ref|YP_001059473.1| peptide deformylase [Burkholderia pseudomallei 668]
gi|126452569|ref|YP_001066757.1| peptide deformylase [Burkholderia pseudomallei 1106a]
gi|134277462|ref|ZP_01764177.1| peptide deformylase [Burkholderia pseudomallei 305]
gi|167004075|ref|ZP_02269849.1| peptide deformylase [Burkholderia mallei PRL-20]
gi|167720172|ref|ZP_02403408.1| peptide deformylase [Burkholderia pseudomallei DM98]
gi|167739177|ref|ZP_02411951.1| peptide deformylase [Burkholderia pseudomallei 14]
gi|167816388|ref|ZP_02448068.1| peptide deformylase [Burkholderia pseudomallei 91]
gi|167824767|ref|ZP_02456238.1| peptide deformylase [Burkholderia pseudomallei 9]
gi|167846298|ref|ZP_02471806.1| peptide deformylase [Burkholderia pseudomallei B7210]
gi|167894880|ref|ZP_02482282.1| peptide deformylase [Burkholderia pseudomallei 7894]
gi|167903269|ref|ZP_02490474.1| peptide deformylase [Burkholderia pseudomallei NCTC 13177]
gi|167911509|ref|ZP_02498600.1| peptide deformylase [Burkholderia pseudomallei 112]
gi|167919519|ref|ZP_02506610.1| peptide deformylase [Burkholderia pseudomallei BCC215]
gi|217421605|ref|ZP_03453109.1| peptide deformylase [Burkholderia pseudomallei 576]
gi|237812813|ref|YP_002897264.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
gi|238563756|ref|ZP_00438343.2| peptide deformylase [Burkholderia mallei GB8 horse 4]
gi|242316254|ref|ZP_04815270.1| peptide deformylase [Burkholderia pseudomallei 1106b]
gi|254178715|ref|ZP_04885370.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
gi|254179317|ref|ZP_04885916.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
gi|254189297|ref|ZP_04895808.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
gi|254197856|ref|ZP_04904278.1| polypeptide deformylase [Burkholderia pseudomallei S13]
gi|254200152|ref|ZP_04906518.1| peptide deformylase [Burkholderia mallei FMH]
gi|254206490|ref|ZP_04912842.1| peptide deformylase [Burkholderia mallei JHU]
gi|254258903|ref|ZP_04949957.1| peptide deformylase [Burkholderia pseudomallei 1710a]
gi|254297203|ref|ZP_04964656.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
gi|386861324|ref|YP_006274273.1| peptide deformylase [Burkholderia pseudomallei 1026b]
gi|403519186|ref|YP_006653320.1| peptide deformylase [Burkholderia pseudomallei BPC006]
gi|418382733|ref|ZP_12966667.1| peptide deformylase [Burkholderia pseudomallei 354a]
gi|418538482|ref|ZP_13104091.1| peptide deformylase [Burkholderia pseudomallei 1026a]
gi|418544855|ref|ZP_13110125.1| peptide deformylase [Burkholderia pseudomallei 1258a]
gi|418551657|ref|ZP_13116565.1| peptide deformylase [Burkholderia pseudomallei 1258b]
gi|418557701|ref|ZP_13122289.1| peptide deformylase [Burkholderia pseudomallei 354e]
gi|52210186|emb|CAH36165.1| putative deformylase [Burkholderia pseudomallei K96243]
gi|52427166|gb|AAU47759.1| polypeptide deformylase [Burkholderia mallei ATCC 23344]
gi|76578469|gb|ABA47944.1| polypeptide deformylase [Burkholderia pseudomallei 1710b]
gi|121230255|gb|ABM52773.1| polypeptide deformylase [Burkholderia mallei SAVP1]
gi|126220345|gb|ABN83851.1| peptide deformylase [Burkholderia pseudomallei 668]
gi|126226211|gb|ABN89751.1| peptide deformylase [Burkholderia pseudomallei 1106a]
gi|134251112|gb|EBA51191.1| peptide deformylase [Burkholderia pseudomallei 305]
gi|147749748|gb|EDK56822.1| peptide deformylase [Burkholderia mallei FMH]
gi|147753933|gb|EDK60998.1| peptide deformylase [Burkholderia mallei JHU]
gi|157806966|gb|EDO84136.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
gi|157936976|gb|EDO92646.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
gi|160699754|gb|EDP89724.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
gi|169654597|gb|EDS87290.1| polypeptide deformylase [Burkholderia pseudomallei S13]
gi|184209857|gb|EDU06900.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
gi|217395347|gb|EEC35365.1| peptide deformylase [Burkholderia pseudomallei 576]
gi|237504956|gb|ACQ97274.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
gi|238520038|gb|EEP83502.1| peptide deformylase [Burkholderia mallei GB8 horse 4]
gi|242139493|gb|EES25895.1| peptide deformylase [Burkholderia pseudomallei 1106b]
gi|243060514|gb|EES42700.1| peptide deformylase [Burkholderia mallei PRL-20]
gi|254217592|gb|EET06976.1| peptide deformylase [Burkholderia pseudomallei 1710a]
gi|385347210|gb|EIF53873.1| peptide deformylase [Burkholderia pseudomallei 1258b]
gi|385347768|gb|EIF54418.1| peptide deformylase [Burkholderia pseudomallei 1026a]
gi|385347883|gb|EIF54529.1| peptide deformylase [Burkholderia pseudomallei 1258a]
gi|385364358|gb|EIF70075.1| peptide deformylase [Burkholderia pseudomallei 354e]
gi|385377075|gb|EIF81695.1| peptide deformylase [Burkholderia pseudomallei 354a]
gi|385658452|gb|AFI65875.1| peptide deformylase [Burkholderia pseudomallei 1026b]
gi|403074829|gb|AFR16409.1| peptide deformylase [Burkholderia pseudomallei BPC006]
Length = 177
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ M M + GL+APQ+G+ L++ I F E + E P V
Sbjct: 28 LHALVADMFETMHHANGAGLAAPQIGVGLQVIIFGFGSSE--------RYPEAPPVPETV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP ++ L D EGC S+ L+ V RYR+V+ +G D+ G AEG+ AR+
Sbjct: 80 LVNPSIEYLP-PDLEEGWEGCLSVPGLRGVVSRYRRVRYSGFDQYGAKLERIAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHEYDHLIGKLY 151
>gi|325284991|ref|YP_004260781.1| peptide deformylase [Cellulophaga lytica DSM 7489]
gi|324320445|gb|ADY27910.1| Peptide deformylase [Cellulophaga lytica DSM 7489]
Length = 196
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 8/166 (4%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV---AFPDPEESFSEGDIKKFEMQAFP 57
+K ++ M M GL+APQVGLPLR+F+V F D E+ +E ++ + F
Sbjct: 27 LKELLENMWETMYNASGVGLAAPQVGLPLRIFLVDTTPFSDDEDLSAE---EQKALNGFK 83
Query: 58 HMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWA 117
+IN ++ I + ++ EGC S+ ++ V R +++T LDE K + G
Sbjct: 84 K-AFINAKI-IEETGEEWAFNEGCLSIPDIREDVSRKENIKITYLDENFKEHTEEYNGLL 141
Query: 118 ARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
AR+IQHE DH++G+LFTD + + + N+ G + + Y M
Sbjct: 142 ARVIQHEYDHIEGILFTDKLSSLKKRLLKSKLGNISKGKIRVEYRM 187
>gi|339483627|ref|YP_004695413.1| peptide deformylase [Nitrosomonas sp. Is79A3]
gi|338805772|gb|AEJ02014.1| Peptide deformylase [Nitrosomonas sp. Is79A3]
Length = 177
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M++ M + GL+APQ+G+ L++ I F + + + + D P V
Sbjct: 29 LHALIQDMQDTMASLNGAGLAAPQIGVSLQVVIFGF-EKNQRYPDAD-------EVPFTV 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP++ L ++ EGC S+ ++ VPRY ++ G+D+ G T G+ AR+
Sbjct: 81 LLNPQLTPLS-DEQEDGWEGCLSVPGMRGMVPRYANLRYQGVDQYGAAIDRTVSGFHARV 139
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 140 VQHECDHLQGILY 152
>gi|389784303|ref|ZP_10195457.1| peptide deformylase [Rhodanobacter spathiphylli B39]
gi|388433217|gb|EIL90184.1| peptide deformylase [Rhodanobacter spathiphylli B39]
Length = 178
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I+ M + M D GL+APQ+G+ L+L I F D E + E A P +
Sbjct: 30 LDALIVDMFDTMHAADGVGLAAPQIGVDLQLVIFGF-DNNERYPEA-------PAVPRTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L +D EGC S+ L+ V RY ++ G+D G+ AEG+ AR+
Sbjct: 82 LLNPVITPLS-QDMEEGWEGCLSVPGLRGAVNRYSLIRYQGIDPQGERIDRRAEGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|333978751|ref|YP_004516696.1| peptide deformylase [Desulfotomaculum kuznetsovii DSM 6115]
gi|333822232|gb|AEG14895.1| Peptide deformylase [Desulfotomaculum kuznetsovii DSM 6115]
Length = 154
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 20/132 (15%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
+++ M GL+APQ+G+ R+ +V D E E INPE
Sbjct: 34 NLRDTMYHARGVGLAAPQIGVSKRVIVV---DTGEGLIE---------------LINPE- 74
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
+++ + + T EGC SL ++ +V R +V++ GLD G P A G+ AR +QHE+D
Sbjct: 75 -VVEARGEETDTEGCLSLPNVVGEVTRAAEVRVKGLDRYGNPVEHHARGFQARALQHEID 133
Query: 127 HLDGLLFTDSML 138
HLDG+LF D +
Sbjct: 134 HLDGILFIDRAV 145
>gi|406931664|gb|EKD66915.1| hypothetical protein ACD_48C00677G0001 [uncultured bacterium]
Length = 167
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 8/132 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M + GL+APQVG+ ++L I+ E+F +I K +V IN
Sbjct: 33 LIQDMIPTMYKEQGIGLAAPQVGVNIQLCIIGKEAIPENFFPTNISK-------DLVLIN 85
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P K V EGC S+ Q KV RY+++ + LDE G+P + A G+ A + QH
Sbjct: 86 PTYTRTGRK-VVLETEGCLSVPGKQGKVKRYKQIYVEALDEQGEPIHFEAHGYLAHVAQH 144
Query: 124 EMDHLDGLLFTD 135
E DHL+ +L+ D
Sbjct: 145 ETDHLNAILYID 156
>gi|237747725|ref|ZP_04578205.1| peptide deformylase [Oxalobacter formigenes OXCC13]
gi|229379087|gb|EEO29178.1| peptide deformylase [Oxalobacter formigenes OXCC13]
Length = 178
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 11/131 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M D GL+APQ+G+ R+ I + D + + P V IN
Sbjct: 32 LIEDMYETMYAADGAGLAAPQIGINQRVVIFGY-DENNRYPDA-------PPVPKTVLIN 83
Query: 64 PEMKILDYKDKVTA-LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
P ++ L D++ A EGC S+ ++ VPR+ K+ G D+ G S A+G+ AR++Q
Sbjct: 84 PVIRPL--SDEIDAGWEGCLSIPGMRGIVPRWAKIHYEGFDQFGNKISRNADGFHARVVQ 141
Query: 123 HEMDHLDGLLF 133
HE DHLDG+L+
Sbjct: 142 HECDHLDGILY 152
>gi|15606030|ref|NP_213407.1| polypeptide deformylase [Aquifex aeolicus VF5]
gi|6014949|sp|O66847.1|DEF_AQUAE RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|2983203|gb|AAC06802.1| polypeptide deformylase [Aquifex aeolicus VF5]
Length = 169
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 16/138 (11%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFP-HM 59
+K +I M + M + GL+A Q+G+PL + ++ E+ A P +
Sbjct: 27 VKNLIRDMFDTMYEAEGVGLAANQIGVPLSVMVIDTSPKED-------------APPLKL 73
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V INPE+K + + K+ EGC S L +V R++KV++ L+E G+P T EG+ A
Sbjct: 74 VLINPEIK--EGEGKIKYKEGCLSFPGLSVEVERFQKVKVNALNEHGEPVELTLEGFPAI 131
Query: 120 IIQHEMDHLDGLLFTDSM 137
+ QHE+DHL G+ F D +
Sbjct: 132 VFQHELDHLKGITFVDRL 149
>gi|410456989|ref|ZP_11310836.1| peptide deformylase [Bacillus bataviensis LMG 21833]
gi|409926963|gb|EKN64114.1| peptide deformylase [Bacillus bataviensis LMG 21833]
Length = 161
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 65/127 (51%), Gaps = 18/127 (14%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M +D GL+APQ+GL R+ IV D + INP +
Sbjct: 35 MYDTMIEYDGVGLAAPQIGLDARIAIVDIDDVRGTIE----------------MINP--R 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
+++ + T EGC S +L +V R V++ D G+ S AEG+ AR IQHE+DH
Sbjct: 77 VIETTGEQTGPEGCLSFPNLFGEVTRPNYVKIEAYDRKGRKYSLEAEGFLARAIQHEIDH 136
Query: 128 LDGLLFT 134
LDG+LFT
Sbjct: 137 LDGILFT 143
>gi|237722139|ref|ZP_04552620.1| peptide deformylase(PDF) [Bacteroides sp. 2_2_4]
gi|262407688|ref|ZP_06084236.1| peptide deformylase [Bacteroides sp. 2_1_22]
gi|294643796|ref|ZP_06721594.1| peptide deformylase [Bacteroides ovatus SD CC 2a]
gi|294808456|ref|ZP_06767209.1| peptide deformylase [Bacteroides xylanisolvens SD CC 1b]
gi|298480836|ref|ZP_06999031.1| peptide deformylase [Bacteroides sp. D22]
gi|336405598|ref|ZP_08586275.1| peptide deformylase [Bacteroides sp. 1_1_30]
gi|345511839|ref|ZP_08791378.1| peptide deformylase [Bacteroides sp. D1]
gi|423213191|ref|ZP_17199720.1| peptide deformylase [Bacteroides xylanisolvens CL03T12C04]
gi|423297784|ref|ZP_17275844.1| peptide deformylase [Bacteroides ovatus CL03T12C18]
gi|229443723|gb|EEO49514.1| peptide deformylase [Bacteroides sp. D1]
gi|229447949|gb|EEO53740.1| peptide deformylase(PDF) [Bacteroides sp. 2_2_4]
gi|262354496|gb|EEZ03588.1| peptide deformylase [Bacteroides sp. 2_1_22]
gi|292640885|gb|EFF59105.1| peptide deformylase [Bacteroides ovatus SD CC 2a]
gi|294444384|gb|EFG13098.1| peptide deformylase [Bacteroides xylanisolvens SD CC 1b]
gi|295085225|emb|CBK66748.1| peptide deformylase [Bacteroides xylanisolvens XB1A]
gi|298272859|gb|EFI14425.1| peptide deformylase [Bacteroides sp. D22]
gi|335937469|gb|EGM99369.1| peptide deformylase [Bacteroides sp. 1_1_30]
gi|392665142|gb|EIY58674.1| peptide deformylase [Bacteroides ovatus CL03T12C18]
gi|392694108|gb|EIY87337.1| peptide deformylase [Bacteroides xylanisolvens CL03T12C04]
Length = 184
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M D GL+APQ+GLP+R+ + E + E K F +
Sbjct: 27 LKELIENMFETMVHADGVGLAAPQIGLPIRVVTITLDPLSEEYPE--FKDF------NKA 78
Query: 61 WINPEMKILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+INP IL+ ++V EGC SL + V R K+++ +DE EG+ AR
Sbjct: 79 YINPH--ILEVGGEEVNMEEGCLSLPGIHETVKRGDKIRVKYMDENFVEHEEEVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHLDG +F D + P
Sbjct: 137 VMQHEFDHLDGKMFIDHISP 156
>gi|440804255|gb|ELR25132.1| polypeptide deformylase [Acanthamoeba castellanii str. Neff]
Length = 209
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 8/139 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M M + GL+APQVG+ +L IV P ++ D+ +Q P MV N
Sbjct: 55 LVRDMTATMHSSEGVGLAAPQVGINKQLVIVHLP------ADSDLPN--LQPVPLMVLFN 106
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P++ + +DK+ E C S+ L KV R+R V++ +D G A G+ A ++QH
Sbjct: 107 PKLTVHRPQDKIAMSESCLSVPGLVGKVWRHRYVRVEYVDTEGNDRRLEASGFIAAMLQH 166
Query: 124 EMDHLDGLLFTDSMLPKSL 142
E+DHL LF D + P L
Sbjct: 167 EIDHLHAKLFIDHVKPGDL 185
>gi|379713205|ref|YP_005301543.1| polypeptide deformylase [Rickettsia massiliae str. AZT80]
gi|376333851|gb|AFB31083.1| polypeptide deformylase [Rickettsia massiliae str. AZT80]
Length = 224
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 10/127 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFE---MQAFPHMVWINPEMKILDYKDKV 75
GL+APQ+G+ + I A + + ++KK+ P +WINP K + DK
Sbjct: 84 GLAAPQIGISKCIIIFAVHE------DAELKKWRPDLKDTMPKTIWINPSYKPIGI-DKH 136
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+++ V R++K+ D G AEG+ AR+IQHE+DHL+G +F D
Sbjct: 137 EDYEGCFSVENAIGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLD 196
Query: 136 SMLPKSL 142
+ P+ +
Sbjct: 197 HVAPQKI 203
>gi|167563193|ref|ZP_02356109.1| peptide deformylase [Burkholderia oklahomensis EO147]
Length = 177
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ M M + GL+APQ+G+ L++ I F E + E P V
Sbjct: 28 LHALVADMFETMHHANGAGLAAPQLGVGLQVIIFGFGSSE--------RYPEAPPVPETV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP ++ L D EGC S+ L+ V RYR+V+ +G D+ G+ AEG+ AR+
Sbjct: 80 LVNPTVEYLP-PDMEEGWEGCLSVPGLRGVVSRYRRVRYSGFDQFGEKLERVAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHEYDHLIGKLY 151
>gi|167570376|ref|ZP_02363250.1| peptide deformylase [Burkholderia oklahomensis C6786]
Length = 177
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ M M + GL+APQ+G+ L++ I F E + E P V
Sbjct: 28 LHALVADMFETMHHANGAGLAAPQLGVGLQVIIFGFGSSE--------RYPEAPPVPETV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP ++ L D EGC S+ L+ V RYR+V+ +G D+ G+ AEG+ AR+
Sbjct: 80 LVNPTVEYLP-PDMEEGWEGCLSVPGLRGVVSRYRRVRYSGFDQFGEKLERVAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHEYDHLIGKLY 151
>gi|442570638|pdb|4DR9|A Chain A, Crystal Structure Of A Peptide Deformylase From
Synechococcus Elongatus In Complex With Actinonin
gi|442570639|pdb|4DR9|B Chain B, Crystal Structure Of A Peptide Deformylase From
Synechococcus Elongatus In Complex With Actinonin
gi|442570640|pdb|4DR9|C Chain C, Crystal Structure Of A Peptide Deformylase From
Synechococcus Elongatus In Complex With Actinonin
gi|442570641|pdb|4DR9|D Chain D, Crystal Structure Of A Peptide Deformylase From
Synechococcus Elongatus In Complex With Actinonin
Length = 192
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I QM M D GL+APQVG+ +L ++ + E + P +V
Sbjct: 43 LRQTIRQMLQTMYSADGIGLAAPQVGINKQLIVIDL-------------ELEDEQAPPLV 89
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP+++ D EGC S+ + V R V+++ DE G+P A+G AR
Sbjct: 90 LINPKIE-RTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARC 148
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHEMDHL+G+LF D +
Sbjct: 149 IQHEMDHLNGVLFVDRV 165
>gi|421749376|ref|ZP_16186824.1| peptide deformylase [Cupriavidus necator HPC(L)]
gi|409771767|gb|EKN53967.1| peptide deformylase [Cupriavidus necator HPC(L)]
Length = 178
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M + M + GL+APQ+G+ L++ I F E + + + P V
Sbjct: 28 LRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVIFGF--------ERNPRYPDAPQVPKTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE+ L + EGC S+ L+ VPR+ ++ TG D G+ AEG+ AR+
Sbjct: 80 LINPELTPLS-DEMEDGWEGCLSVPGLRGMVPRHTSLRYTGFDLMGQRIERVAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 139 VQHECDHLRGILY 151
>gi|386353985|ref|YP_006052231.1| polypeptide deformylase [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|365804493|gb|AEW92709.1| polypeptide deformylase [Streptomyces cattleya NRRL 8057 = DSM
46488]
Length = 200
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 14/134 (10%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M M D GL+APQ+G LR+F+ PD EE ++ H+V N
Sbjct: 60 LVEDMFATMYAADGVGLAAPQIGTALRVFVYDCPDDEE-----------LRHLGHVV--N 106
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + + VT EGC SL + A PR+ + + G+D G P G+ AR +QH
Sbjct: 107 PRL-VEAGGVTVTGSEGCLSLPGIDAATPRFDETVVEGVDVHGHPVRVAGTGFFARCLQH 165
Query: 124 EMDHLDGLLFTDSM 137
E HLDG LFTD +
Sbjct: 166 ECVHLDGGLFTDRL 179
>gi|56750222|ref|YP_170923.1| peptide deformylase [Synechococcus elongatus PCC 6301]
gi|81300149|ref|YP_400357.1| peptide deformylase [Synechococcus elongatus PCC 7942]
gi|56685181|dbj|BAD78403.1| polypeptide deformylase [Synechococcus elongatus PCC 6301]
gi|81169030|gb|ABB57370.1| peptide deformylase [Synechococcus elongatus PCC 7942]
Length = 192
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I QM M D GL+APQVG+ +L ++ + E + P +V
Sbjct: 43 LRQTIRQMLQTMYSADGIGLAAPQVGINKQLIVIDL-------------ELEDEQAPPLV 89
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP+++ D EGC S+ + V R V+++ DE G+P A+G AR
Sbjct: 90 LINPKIE-RTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARC 148
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHEMDHL+G+LF D +
Sbjct: 149 IQHEMDHLNGVLFVDRV 165
>gi|357397945|ref|YP_004909870.1| Peptide deformylase 2 [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|337764354|emb|CCB73063.1| Peptide deformylase 2 [Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 166
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 14/134 (10%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M M D GL+APQ+G LR+F+ PD EE ++ H+V N
Sbjct: 26 LVEDMFATMYAADGVGLAAPQIGTALRVFVYDCPDDEE-----------LRHLGHVV--N 72
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + + VT EGC SL + A PR+ + + G+D G P G+ AR +QH
Sbjct: 73 PRL-VEAGGVTVTGSEGCLSLPGIDAATPRFDETVVEGVDVHGHPVRVAGTGFFARCLQH 131
Query: 124 EMDHLDGLLFTDSM 137
E HLDG LFTD +
Sbjct: 132 ECVHLDGGLFTDRL 145
>gi|124024845|ref|YP_001013961.1| peptide deformylase [Prochlorococcus marinus str. NATL1A]
gi|158512738|sp|A2BZN6.1|DEF_PROM1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|123959913|gb|ABM74696.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
NATL1A]
Length = 202
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ RL ++ FE P MV+INPE+ I T
Sbjct: 72 IGLAAPQVGIQKRLLVIDL-------------NFEDPNSPPMVFINPEI-ISSSATVDTY 117
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + V R ++L+ DE G+P A+G AR IQHE+DHL+G+ F D +
Sbjct: 118 EEGCLSIPGVYLNVLRPSSIKLSYRDEMGRPKKMNADGLMARCIQHEIDHLNGVCFVDKV 177
>gi|194014710|ref|ZP_03053327.1| peptide deformylase [Bacillus pumilus ATCC 7061]
gi|194013736|gb|EDW23301.1| peptide deformylase [Bacillus pumilus ATCC 7061]
Length = 160
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 18/131 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M D GL+APQ+G+ R+ +V D E D+ +NPE
Sbjct: 35 MYDTMLELDGVGLAAPQIGISQRIAVV---DIGEEPGRIDL-------------VNPE-- 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
+L+ K T +EGC S SL V R V++ D+ GKP + AEG+ AR + HE+DH
Sbjct: 77 VLEIKGSQTDIEGCLSFPSLYGTVERPSYVKVKAFDKKGKPFTIEAEGFLARALLHEIDH 136
Query: 128 LDGLLFTDSML 138
LDG+LFT ++
Sbjct: 137 LDGILFTSKII 147
>gi|227539328|ref|ZP_03969377.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33300]
gi|227241010|gb|EEI91025.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33300]
Length = 192
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 8/164 (4%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHM 59
+K +I M + M GL+APQ+GL +R+F++ A P E+ + +K F+
Sbjct: 27 IKELIANMYDTMYAAHGVGLAAPQIGLAIRVFVIDASPFAEDDDEDKSLKDFKK------ 80
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V+INP + + + +K EGC S+ + +V R V + LDE + G AAR
Sbjct: 81 VFINP-IIVEETGEKWGFNEGCLSIPDINEEVFRPANVVINYLDENFEEHEIELSGLAAR 139
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
I+QHE DHL+G LFTD + P + + + GL+ + Y M
Sbjct: 140 IVQHEYDHLEGKLFTDKLGPLKKAMLKGKLDAISKGLIRVGYKM 183
>gi|168186792|ref|ZP_02621427.1| peptide deformylase [Clostridium botulinum C str. Eklund]
gi|169295112|gb|EDS77245.1| peptide deformylase [Clostridium botulinum C str. Eklund]
Length = 150
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 67/140 (47%), Gaps = 20/140 (14%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I MK M D GL+APQVG+ RL ++ EG I IN
Sbjct: 31 LIEDMKETMYEADGVGLAAPQVGILKRLVVI-------DVGEGPI-----------TLIN 72
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE I++ + T EGC SL Q KV R KV L+E G+ EG AR I H
Sbjct: 73 PE--IIESEGSQTDYEGCLSLPGKQGKVTRPYKVTAKALNEKGEQVKIKGEGLLARAICH 130
Query: 124 EMDHLDGLLFTDSMLPKSLE 143
E+DHLDG LF D ++ + E
Sbjct: 131 ELDHLDGTLFIDKVIEEKGE 150
>gi|134094555|ref|YP_001099630.1| peptide deformylase 2 like proterin [Herminiimonas arsenicoxydans]
gi|133738458|emb|CAL61503.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Herminiimonas
arsenicoxydans]
Length = 178
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M GL+APQ+G+ LRL I F + + + + P V
Sbjct: 29 LNALIADMFDTMHAAHGAGLAAPQIGVNLRLVIYGF--------KQNTRYPDAPPVPETV 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP+++ L ++ EGC S+ L+ VPR+ + G D+ GK S A+G+ AR+
Sbjct: 81 LINPKLRPLS-SEREEGWEGCLSVPGLRGVVPRFSSLHYEGFDQFGKAISRDADGFHARV 139
Query: 121 IQHEMDHLDGLLF 133
+QHE DHLDG+L+
Sbjct: 140 VQHECDHLDGILY 152
>gi|428213943|ref|YP_007087087.1| peptide deformylase [Oscillatoria acuminata PCC 6304]
gi|428002324|gb|AFY83167.1| peptide deformylase [Oscillatoria acuminata PCC 6304]
Length = 187
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ +M M D GL+APQVG+ ++ +V E A P +V
Sbjct: 41 IRQLVREMLQSMYTADGIGLAAPQVGVQKQVIVVDC-------------DLENPATPPLV 87
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP +K D+ T EGC S+ + V R +++ DE G+P TA+G +R
Sbjct: 88 LINPVIKKFG-GDECTYQEGCLSIPGVYLDVKRPEIIEVAFKDERGRPQKLTAKGIVSRC 146
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHEMDHL+G+LF D +
Sbjct: 147 IQHEMDHLNGVLFVDRV 163
>gi|18310726|ref|NP_562660.1| peptide deformylase [Clostridium perfringens str. 13]
gi|110802372|ref|YP_699030.1| peptide deformylase [Clostridium perfringens SM101]
gi|23396559|sp|Q8XJL2.1|DEF1_CLOPE RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|18145407|dbj|BAB81450.1| polypeptide deformylase [Clostridium perfringens str. 13]
gi|110682873|gb|ABG86243.1| peptide deformylase [Clostridium perfringens SM101]
Length = 147
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 69/138 (50%), Gaps = 18/138 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K+++ M M + GL++PQVG+ R+F+V D S V
Sbjct: 28 IKVLVEDMIETMYENNGVGLASPQVGILKRIFVVDAMDGAGS----------------RV 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INPE IL+ + T EGC SL V R K+++ LD G AEG+ AR
Sbjct: 72 FINPE--ILEKSGEQTDEEGCLSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEGFLARA 129
Query: 121 IQHEMDHLDGLLFTDSML 138
IQHE DHL+G+LF D L
Sbjct: 130 IQHEYDHLEGVLFIDHEL 147
>gi|157964118|ref|YP_001498942.1| polypeptide deformylase [Rickettsia massiliae MTU5]
gi|157843894|gb|ABV84395.1| Polypeptide deformylase [Rickettsia massiliae MTU5]
Length = 232
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 10/127 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFE---MQAFPHMVWINPEMKILDYKDKV 75
GL+APQ+G+ + I A + + ++KK+ P +WINP K + DK
Sbjct: 92 GLAAPQIGISKCIIIFAVHE------DAELKKWRPDLKDTMPKTIWINPSYKPIGI-DKH 144
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+++ V R++K+ D G AEG+ AR+IQHE+DHL+G +F D
Sbjct: 145 EDYEGCFSVENAIGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLD 204
Query: 136 SMLPKSL 142
+ P+ +
Sbjct: 205 YVAPQKI 211
>gi|374299878|ref|YP_005051517.1| Peptide deformylase [Desulfovibrio africanus str. Walvis Bay]
gi|332552814|gb|EGJ49858.1| Peptide deformylase [Desulfovibrio africanus str. Walvis Bay]
Length = 182
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M M + GL+APQVG RL ++ P+ K+ +++ V +NP K
Sbjct: 34 MAETMYTNEGIGLAAPQVGECCRLVVIDITGPD--------KREDLR-----VLVNP--K 78
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
I + KV + EGC S+ ++ V R KV + D GKP S A+G A +QHE+DH
Sbjct: 79 ITAAEGKVVSEEGCLSVSGYRSDVARSEKVTVEATDLDGKPLSIEADGLLAVCLQHELDH 138
Query: 128 LDGLLFTD--SMLPKSL 142
LDG+LF D S L +SL
Sbjct: 139 LDGVLFIDRISRLKRSL 155
>gi|296116575|ref|ZP_06835185.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
gi|295976787|gb|EFG83555.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
Length = 178
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M M+ GL+APQV R+F+ PD S + D Q V IN
Sbjct: 32 LVADMIETMEDAGGVGLAAPQVHRSCRVFVYRVPDTRSSGAPDD------QPCGPQVLIN 85
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + + ++ V LEGC S+ L+ VPR+ +V G D G+ TA G+ A ++QH
Sbjct: 86 PHLTPIG-EETVLRLEGCLSIPGLRGWVPRHTRVAYHGYDAQGRQVKGTASGFLANVMQH 144
Query: 124 EMDHLDGLLF 133
E DHL+G+L+
Sbjct: 145 EYDHLNGILY 154
>gi|11320966|gb|AAG33980.1|AF269165_1 peptide deformylase [Arabidopsis thaliana]
Length = 273
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M +VM + D GLSAPQVGL ++L + +P EG +V
Sbjct: 105 LKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVF---NPAGEPGEGK----------EIV 151
Query: 61 WINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+NP KI Y DK+ EGC S + A+V R + V++ D TG+ S + AR
Sbjct: 152 LVNP--KIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSSLPAR 209
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECV 145
I QHE DHL+G+LF D M + L+ +
Sbjct: 210 IFQHEYDHLEGVLFFDRMTDQVLDSI 235
>gi|119960758|ref|YP_947936.1| peptide deformylase [Arthrobacter aurescens TC1]
gi|119947617|gb|ABM06528.1| peptide deformylase [Arthrobacter aurescens TC1]
Length = 224
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 10/147 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFP---DPEESFSEGDIKKFEMQAFP 57
+ + +MK VM GL+APQ+G+PL+L ++ DPE + ++ E F
Sbjct: 61 LAAFLERMKEVMHDAPGVGLAAPQLGIPLQLAVLEDKYEVDPESAA----VRHREPLEF- 115
Query: 58 HMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWA 117
+NP+ + L + + EGC S+ QA V R+R V+L + G+P GW
Sbjct: 116 -FAIVNPQYRPLG-TETASFYEGCLSVSGYQAVVTRHRNVELRYTNPAGEPVEEWFSGWQ 173
Query: 118 ARIIQHEMDHLDGLLFTDSMLPKSLEC 144
ARI+QHE DHL G+L+ D +SL
Sbjct: 174 ARIVQHETDHLRGILYLDRAELRSLSS 200
>gi|50954573|ref|YP_061861.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951055|gb|AAT88756.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 188
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 11/138 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ +M + M GL+ PQVG+PLRLF+ + D +E G A ++
Sbjct: 28 LRTLVAEMFDTMDEAPGVGLAGPQVGVPLRLFVYGWTDDDEVLHRG-------VAINPVL 80
Query: 61 WINP-EMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
W +P E LD + EGC S + + R +V L +D G P EGW AR
Sbjct: 81 WQSPLETGPLDEDAEC---EGCLSFPGERFPLRRAERVILQAVDLEGAPFEVRTEGWLAR 137
Query: 120 IIQHEMDHLDGLLFTDSM 137
I QHE DHL+G+L+ D +
Sbjct: 138 IFQHECDHLEGVLYVDRL 155
>gi|46199964|ref|YP_005631.1| peptide deformylase [Thermus thermophilus HB27]
gi|55980290|ref|YP_143587.1| peptide deformylase [Thermus thermophilus HB8]
gi|1169265|sp|P43522.1|DEF_THETH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|81678630|sp|Q5SLH2.1|DEF_THET8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|81699227|sp|Q72H33.1|DEF_THET2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|602914|emb|CAA55695.1| N-formylmethionylaminoacyl-tRNA deformylase [Thermus thermophilus]
gi|46197591|gb|AAS82004.1| polypeptide deformylase, fms protein-like protein [Thermus
thermophilus HB27]
gi|55771703|dbj|BAD70144.1| polypeptide deformylase [Thermus thermophilus HB8]
Length = 192
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 10/125 (8%)
Query: 19 GLSAPQVGLPLRLFI-VAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDK-VT 76
GL+APQ+GL RLF+ V + D E E +++ + + V NP ++ Y++ V
Sbjct: 44 GLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVRRVY---VVANP---VITYREGLVE 97
Query: 77 ALEGCASLKSLQAK-VPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC SL L ++ VPR ++++ DE G+ EG+ AR+ QHE+DHLDG+LF +
Sbjct: 98 GTEGCLSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFE 157
Query: 136 SMLPK 140
LPK
Sbjct: 158 R-LPK 161
>gi|406707254|ref|YP_006757606.1| peptide deformylase [alpha proteobacterium HIMB59]
gi|406653030|gb|AFS48429.1| peptide deformylase [alpha proteobacterium HIMB59]
Length = 170
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 75/137 (54%), Gaps = 16/137 (11%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVW 61
+ +I +M VM + GL+APQVGL +R+FIV D E + P +
Sbjct: 27 RTLIKEMYEVMYEANGVGLAAPQVGLDMRIFIV------------DAAAREEEKTP-ITM 73
Query: 62 INPEMKILDYKDKVTALE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP K++ +D V E GC S A++ R K+++ +DE + + +G+ +RI
Sbjct: 74 INP--KLISIEDDVVPYEEGCLSFPEHFAEIDRPDKLKIEYIDENNQKKILSTDGFTSRI 131
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHE+DHL+G+LF D +
Sbjct: 132 IQHELDHLNGILFVDHL 148
>gi|409405981|ref|ZP_11254443.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase
[Herbaspirillum sp. GW103]
gi|386434530|gb|EIJ47355.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase
[Herbaspirillum sp. GW103]
Length = 178
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 76/134 (56%), Gaps = 11/134 (8%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHM 59
++ ++ M M+ + GL+APQ+G+ L+L I F G +++ + A P
Sbjct: 29 LEQLVEDMFETMRAVNGAGLAAPQIGVDLQLVIFGF---------GHNQRYPDAPAVPET 79
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V INP + L +++ EGC S+ ++ VPR+ +++ G+D+ GK T +G+ AR
Sbjct: 80 VLINPVLTPLSEQEE-DGWEGCLSVPGMRGVVPRWTRLRYQGVDQYGKVIDRTVDGFHAR 138
Query: 120 IIQHEMDHLDGLLF 133
++QHE DHL G+L+
Sbjct: 139 VVQHECDHLQGILY 152
>gi|330817443|ref|YP_004361148.1| Peptide deformylase [Burkholderia gladioli BSR3]
gi|327369836|gb|AEA61192.1| Peptide deformylase [Burkholderia gladioli BSR3]
Length = 177
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
++ M M + GL+APQ+G+ L+L I F G+ ++ + P V I
Sbjct: 31 LVADMFETMHHANGAGLAAPQIGVGLQLIIFGF---------GNNARYPDAPPVPETVLI 81
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP ++ L D EGC S+ ++ V RY KV +G D+ GK AEG+ AR++Q
Sbjct: 82 NPSVEYLP-PDMEEGWEGCLSVPGMRGVVSRYSKVHYSGFDQYGKRIDRIAEGFHARVVQ 140
Query: 123 HEMDHLDGLLF 133
HE DHL G L+
Sbjct: 141 HEYDHLIGKLY 151
>gi|383785405|ref|YP_005469975.1| polypeptide deformylase [Leptospirillum ferrooxidans C2-3]
gi|383084318|dbj|BAM07845.1| putative polypeptide deformylase [Leptospirillum ferrooxidans C2-3]
Length = 179
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
G++APQVGL LR F+ ++ E +V +NPE I++ + VT
Sbjct: 45 IGIAAPQVGLNLRFFVYDMN-----------RRAEKTGRSPVVLLNPE--IIESEGSVTE 91
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S + +PR+ ++ + G D G+ + G +R+IQHEMDHLDGLL D M
Sbjct: 92 DEGCLSFPGIFVPLPRHERIGVRGHDPDGRIIELSGSGLFSRLIQHEMDHLDGLLLRDRM 151
>gi|15639744|ref|NP_219194.1| polypeptide deformylase (def) [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189025982|ref|YP_001933754.1| polypeptide deformylase [Treponema pallidum subsp. pallidum SS14]
gi|338706709|ref|YP_004673477.1| peptide deformylase [Treponema paraluiscuniculi Cuniculi A]
gi|378973266|ref|YP_005221872.1| peptide deformylase [Treponema pallidum subsp. pertenue str.
SamoaD]
gi|378974333|ref|YP_005222941.1| peptide deformylase [Treponema pallidum subsp. pertenue str.
Gauthier]
gi|378975391|ref|YP_005224001.1| peptide deformylase [Treponema pallidum subsp. pallidum DAL-1]
gi|378982242|ref|YP_005230549.1| peptide deformylase [Treponema pallidum subsp. pertenue str. CDC2]
gi|384422253|ref|YP_005631612.1| peptide deformylase [Treponema pallidum subsp. pallidum str.
Chicago]
gi|408502613|ref|YP_006870057.1| peptide deformylase [Treponema pallidum subsp. pallidum str. Mexico
A]
gi|6014952|sp|O83738.1|DEF_TREPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238689341|sp|B2S3Z6.1|DEF_TREPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|3323063|gb|AAC65724.1| polypeptide deformylase (def) [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189018557|gb|ACD71175.1| polypeptide deformylase [Treponema pallidum subsp. pallidum SS14]
gi|291060119|gb|ADD72854.1| peptide deformylase [Treponema pallidum subsp. pallidum str.
Chicago]
gi|335344770|gb|AEH40686.1| peptide deformylase [Treponema paraluiscuniculi Cuniculi A]
gi|374677591|gb|AEZ57884.1| peptide deformylase [Treponema pallidum subsp. pertenue str.
SamoaD]
gi|374678661|gb|AEZ58953.1| peptide deformylase [Treponema pallidum subsp. pertenue str. CDC2]
gi|374679730|gb|AEZ60021.1| peptide deformylase [Treponema pallidum subsp. pertenue str.
Gauthier]
gi|374680791|gb|AEZ61081.1| peptide deformylase [Treponema pallidum subsp. pallidum DAL-1]
gi|408475976|gb|AFU66741.1| peptide deformylase [Treponema pallidum subsp. pallidum str. Mexico
A]
Length = 162
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 19/140 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I M VM+ GL+APQVG +R+F+V D++ ++AF
Sbjct: 25 LRAFISGMFRVMRGAGGVGLAAPQVGRTVRVFVV------------DVEH-HVRAF---- 67
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP++ +++ + EGC S+ + +V R R+V + LDE GK + A+G AR+
Sbjct: 68 -INPQITAAS-EEQSSYEEGCLSIPHIYERVLRPRRVSVQYLDENGKRCAVDADGILARV 125
Query: 121 IQHEMDHLDGLLFTDSMLPK 140
IQHE DHLDG+LF D + K
Sbjct: 126 IQHEYDHLDGILFLDRIDEK 145
>gi|407977640|ref|ZP_11158477.1| peptide deformylase [Bacillus sp. HYC-10]
gi|407415893|gb|EKF37474.1| peptide deformylase [Bacillus sp. HYC-10]
Length = 160
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 73/138 (52%), Gaps = 18/138 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M + M D GL+APQ+G+ R+ +V D E D+
Sbjct: 28 LKKMLDDMYDTMLELDGVGLAAPQIGISKRIAVV---DIGEDSGRIDL------------ 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NPE IL+ + T +EGC S SL V R V++ D+ GKP + AEG+ AR
Sbjct: 73 -VNPE--ILEVEGSQTDIEGCLSFPSLYGTVERPNYVKVKAFDKKGKPFTIEAEGFLARA 129
Query: 121 IQHEMDHLDGLLFTDSML 138
+ HE+DHLDG+LFT ++
Sbjct: 130 LLHEIDHLDGVLFTSKII 147
>gi|325963040|ref|YP_004240946.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
gi|323469127|gb|ADX72812.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
Length = 194
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 68/136 (50%), Gaps = 23/136 (16%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M M+ D GL+APQVG+ R+F EG I IN
Sbjct: 31 LVADMTETMEDVDGAGLAAPQVGVSKRVFTYRI-----DGVEGHI-------------IN 72
Query: 64 PEMKILD--YKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
P ++ D +D+V EGC S+ L V RYR ++TG+D G P + EG AR
Sbjct: 73 PVLENSDDFQQDQV---EGCLSIPGLGFPVRRYRSTRVTGVDMNGNPVTVEGEGLLARCF 129
Query: 122 QHEMDHLDGLLFTDSM 137
QHE DHLDG+L+TD +
Sbjct: 130 QHENDHLDGILYTDRL 145
>gi|402566194|ref|YP_006615539.1| peptide deformylase [Burkholderia cepacia GG4]
gi|402247391|gb|AFQ47845.1| peptide deformylase [Burkholderia cepacia GG4]
Length = 177
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
I+ M M + GL+APQ+GL L++ I F G ++ E P V I
Sbjct: 31 IVADMFETMHHANGAGLAAPQIGLGLQIIIFGF---------GSNNRYPEAPPVPETVLI 81
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP+++ + D EGC S+ ++ V RY KV+ +G D+ G AEG+ AR++Q
Sbjct: 82 NPKLEYMP-PDMEEGWEGCLSVPGMRGVVSRYAKVRYSGFDQFGAKIDRVAEGFHARVVQ 140
Query: 123 HEMDHLDGLLF 133
HE DHL G L+
Sbjct: 141 HEYDHLIGKLY 151
>gi|1072950|pir||A55228 fms protein homolog - Thermus aquaticus (fragment)
Length = 191
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 10/125 (8%)
Query: 19 GLSAPQVGLPLRLFI-VAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDK-VT 76
GL+APQ+GL RLF+ V + D E E +++ + + V NP ++ Y++ V
Sbjct: 43 GLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVRRVY---VVANP---VITYREGLVE 96
Query: 77 ALEGCASLKSLQAK-VPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC SL L ++ VPR ++++ DE G+ EG+ AR+ QHE+DHLDG+LF +
Sbjct: 97 GTEGCLSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFE 156
Query: 136 SMLPK 140
LPK
Sbjct: 157 R-LPK 160
>gi|170781968|ref|YP_001710300.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus]
gi|169156536|emb|CAQ01687.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus]
Length = 188
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 17/141 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M M GL+APQVG+PLR+F+ ++ + G V
Sbjct: 28 LRSLVADMYETMDEAPGVGLAAPQVGVPLRVFVYSYETDDGEPLRG-------------V 74
Query: 61 WINPEMKI----LDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
+NP++ I + D+ T EGC S + + R + L +D G+P A GW
Sbjct: 75 AVNPDLFITPVAVREADEDTEEEGCLSFPGERFPLVRADRAILRAVDLDGRPYEIEAAGW 134
Query: 117 AARIIQHEMDHLDGLLFTDSM 137
ARI+QHE DHLDGLL+TD +
Sbjct: 135 FARILQHEYDHLDGLLYTDRL 155
>gi|402846702|ref|ZP_10895011.1| peptide deformylase [Porphyromonas sp. oral taxon 279 str. F0450]
gi|402267394|gb|EJU16789.1| peptide deformylase [Porphyromonas sp. oral taxon 279 str. F0450]
Length = 188
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 9/161 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M M D GL+APQ+G +RLF++ E+F E K
Sbjct: 27 LSTLIEDMWETMYFSDGIGLAAPQIGRAIRLFVIDADPMAETFPECKGLK--------QT 78
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+IN + + +D + EGC S+ + KV R + + LD +P T G+AAR+
Sbjct: 79 FINARI-VESSEDTLAENEGCLSIPGINEKVTRPATITIEYLDADFQPHRETYTGFAARV 137
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
IQHE DH++G+LF D + + + + N+Q G + Y
Sbjct: 138 IQHEYDHIEGVLFIDKIATIRKQLIKGKLANMQKGKVSAHY 178
>gi|312143913|ref|YP_003995359.1| peptide deformylase [Halanaerobium hydrogeniformans]
gi|311904564|gb|ADQ15005.1| peptide deformylase [Halanaerobium hydrogeniformans]
Length = 150
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 19/121 (15%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ R+ ++ EG+ +V INPE I++ K+
Sbjct: 45 VGLAAPQVGILKRIAVI-------DIGEGN----------KIVLINPE--IIEENGKMIM 85
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ +V R ++++++ L+ G+ AEG+ AR IQHE+DHLDG+LF D M
Sbjct: 86 EEGCLSIPGRTGEVIRSKEIKVSSLNRDGEEIEIIAEGFEARAIQHEIDHLDGVLFIDKM 145
Query: 138 L 138
+
Sbjct: 146 V 146
>gi|374594361|ref|ZP_09667366.1| peptide deformylase [Gillisia limnaea DSM 15749]
gi|373872436|gb|EHQ04433.1| peptide deformylase [Gillisia limnaea DSM 15749]
Length = 196
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHM--VWINPEMKILDYKDKVT 76
GL+A Q+GLP+RLFI+ DP + +++ E + ++ V+INP++ + + ++
Sbjct: 45 GLAAQQIGLPIRLFII---DPSAFGEDEELEIAEQEQLKNLRKVFINPKI-VAEEGEEWA 100
Query: 77 ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
EGC S+ ++ V R +++ + DE S EG AAR+IQHE DH++G+LFTD
Sbjct: 101 FNEGCLSIPEVREDVFRKQQITIEYQDENFNSFSEVYEGLAARVIQHEYDHIEGILFTDK 160
Query: 137 MLPKSLECVCWQDINLQNGLLELRYYM 163
+ + + N+ G ++ Y M
Sbjct: 161 LSSLKKRLIKGKLANISKGKIQGDYKM 187
>gi|416893349|ref|ZP_11924537.1| peptide deformylase [Aggregatibacter aphrophilus ATCC 33389]
gi|347813903|gb|EGY30555.1| peptide deformylase [Aggregatibacter aphrophilus ATCC 33389]
Length = 170
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 17/136 (12%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
II M + M + + GL+APQV + R+ + EGD + +V IN
Sbjct: 31 IIDNMFDTMYQEEGIGLAAPQVDILQRIITIDI--------EGDKQN-------QLVLIN 75
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE IL+ + K EGC S+ +A VPR KV + LD GK + A+G A IQH
Sbjct: 76 PE--ILESEGKTGIEEGCLSIPGFRAWVPRKEKVTIRALDRDGKEFTLKADGLLAICIQH 133
Query: 124 EMDHLDGLLFTDSMLP 139
E+DHL+G+LF D + P
Sbjct: 134 EIDHLNGILFVDYLSP 149
>gi|389815941|ref|ZP_10207178.1| peptide deformylase [Planococcus antarcticus DSM 14505]
gi|388465435|gb|EIM07752.1| peptide deformylase [Planococcus antarcticus DSM 14505]
Length = 169
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 18/134 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +++ M M D G++APQVG+ +R +V F + +E
Sbjct: 28 LAVLLDDMHETMVESDGVGIAAPQVGVAVRAALVDFREGQEPIE---------------- 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE+ + + + T +EGC S + +V RY +++ + G AEG+ AR
Sbjct: 72 LINPELMLFEGAE--TDIEGCLSFPGIFGEVERYDHIKIKAQERDGSWYELEAEGYEARA 129
Query: 121 IQHEMDHLDGLLFT 134
IQHEMDHLDG+LFT
Sbjct: 130 IQHEMDHLDGILFT 143
>gi|386855260|ref|YP_006259437.1| Peptide deformylase [Deinococcus gobiensis I-0]
gi|379998789|gb|AFD23979.1| Peptide deformylase [Deinococcus gobiensis I-0]
Length = 208
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQ+GL +RLF+ + +E D + + V INP + +L+ K +
Sbjct: 50 GLAAPQIGLGVRLFVAVEYEDDEEEGGDDDTPLKSRVLRDFVMINPVIAVLNKKKDKSYQ 109
Query: 79 EGCASLKSL-QAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + + VPR R++ + D G+ + AE + AR+ QHE+DHLDG+LF D +
Sbjct: 110 EGCLSIPGIYEEGVPRARQIAVRYTDLDGQERTIEAEDYLARVFQHEIDHLDGVLFLDRL 169
>gi|329912478|ref|ZP_08275758.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
gi|327545607|gb|EGF30770.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
Length = 178
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
M+++I M M + GL+APQ+G+ L+L I S +++ E P +
Sbjct: 29 MRLLIADMFETMHAVNGAGLAAPQIGVNLQLVIYG--------SRNNVRYPEAPEVPETI 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L + V EGC S+ L+ VPR++ + G+D+ G S +G+ AR+
Sbjct: 81 LINPVLTPLS-DELVENWEGCLSVPGLRGVVPRWQALHYEGVDQFGAVISRDVDGFHARV 139
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 140 VQHECDHLIGVLY 152
>gi|359783929|ref|ZP_09287136.1| peptide deformylase [Pseudomonas psychrotolerans L19]
gi|359368168|gb|EHK68752.1| peptide deformylase [Pseudomonas psychrotolerans L19]
Length = 179
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M + M GL+APQ+G L+L + F E +++ E P V
Sbjct: 30 LRGLIQDMFDTMAAAGGVGLAAPQIGEDLQLMVFGF--------ERNVRYPEAAPVPLQV 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP +++LD +++ EGC S+ L+ +VPR R+++ G+D G+P AEG+ AR+
Sbjct: 82 LINPRIEVLDASEEL-GWEGCLSIPGLRGEVPRPRRIRYQGVDGDGRPVDQEAEGFHARV 140
Query: 121 IQHEMDHLDGLLFTDSM 137
+ HE DHL G L+ +
Sbjct: 141 VLHEYDHLIGRLYPSRI 157
>gi|86133858|ref|ZP_01052440.1| polypeptide deformylase [Polaribacter sp. MED152]
gi|85820721|gb|EAQ41868.1| polypeptide deformylase [Polaribacter sp. MED152]
Length = 196
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 4/164 (2%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I MK M GL+APQ+G +RLF++ E D ++ ++ F + V
Sbjct: 27 LKELIANMKETMYNASGVGLAAPQIGKAIRLFVIDASPFAEDDDLDDEERATLKDF-NRV 85
Query: 61 WINPEMKILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+INP KI+D + ++ T EGC S+ ++ V R KV L DE + +G AAR
Sbjct: 86 YINP--KIIDEEGEEWTFNEGCLSIPDVREDVTRKSKVTLEYQDEDFNTHTEVLDGLAAR 143
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
+ QHE DH++G+LFTD + + + N+ G + Y M
Sbjct: 144 VFQHEYDHIEGVLFTDKVSSLKKRLIKRKLENISKGKIRADYRM 187
>gi|121604720|ref|YP_982049.1| peptide deformylase [Polaromonas naphthalenivorans CJ2]
gi|120593689|gb|ABM37128.1| peptide deformylase [Polaromonas naphthalenivorans CJ2]
Length = 179
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +++ M M+ D GL+APQ+G+ L++ I + + P V
Sbjct: 29 LHVLVSDMFYTMQSVDGAGLAAPQIGVDLQVVIFGSDQLNPRYPAAPV-------VPRTV 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L D+ + EGC S+ L+ VPR+ ++ TG D+ G P T +G+ AR+
Sbjct: 82 LVNPVITPLS-ADEESDWEGCLSVPGLRGMVPRFSHIRYTGFDQYGDPIDRTVDGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGKLY 153
>gi|217077056|ref|YP_002334772.1| peptide deformylase [Thermosipho africanus TCF52B]
gi|419759636|ref|ZP_14285926.1| peptide deformylase [Thermosipho africanus H17ap60334]
gi|217036909|gb|ACJ75431.1| def peptide deformylase [Thermosipho africanus TCF52B]
gi|407515320|gb|EKF50089.1| peptide deformylase [Thermosipho africanus H17ap60334]
Length = 165
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 20/128 (15%)
Query: 16 DLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
D GL+APQVG+ LR F + +G + P ++ +NPE+ I ++K
Sbjct: 39 DGVGLAAPQVGISLRFF---------AMDDG--------SGP-LIIVNPEI-IEHSQEKE 79
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC SL + V RY+ V+L DE GK EG++ARI+QHE DHLDG+LF D
Sbjct: 80 IGEEGCLSLPGIFEDVERYKWVKLRYQDEYGKVQEKLFEGYSARIVQHERDHLDGILFID 139
Query: 136 SMLPKSLE 143
LP S++
Sbjct: 140 H-LPTSVK 146
>gi|327200562|pdb|3M6Q|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) G41q Mutant In Complex With
Actinonin
gi|335892379|pdb|3PN5|A Chain A, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) G41q Mutant
Length = 193
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M +VM + D GLSAPQVGL ++L + +P EG +V
Sbjct: 25 LKNLVDAMFDVMYKTDQIGLSAPQVGLNVQLMVF---NPAGEPGEGK----------EIV 71
Query: 61 WINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+NP KI Y DK+ EGC S + A+V R + V++ D TG+ S + AR
Sbjct: 72 LVNP--KIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPAR 129
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECV 145
I QHE DHL+G+LF D M + L+ +
Sbjct: 130 IFQHEYDHLEGVLFFDRMTDQVLDSI 155
>gi|428777407|ref|YP_007169194.1| peptide deformylase [Halothece sp. PCC 7418]
gi|428691686|gb|AFZ44980.1| peptide deformylase [Halothece sp. PCC 7418]
Length = 188
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 14/131 (10%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
+M M D GL+APQVG+ ++ ++ DP + A P ++ INPE+
Sbjct: 47 EMIQTMYAEDGIGLAAPQVGVNKQMLVIDC-DPNNT------------ATPPLILINPEI 93
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
K ++ T EGC S+ + V R V++ DE+G+P A G AR+IQHE+D
Sbjct: 94 KSYS-QELATGEEGCLSIPGVFLDVVRPEAVEVKYKDESGRPQKMQASGLLARVIQHELD 152
Query: 127 HLDGLLFTDSM 137
HL G+LF D +
Sbjct: 153 HLHGVLFVDRV 163
>gi|260062214|ref|YP_003195294.1| peptide deformylase [Robiginitalea biformata HTCC2501]
gi|88783776|gb|EAR14947.1| peptide deformylase [Robiginitalea biformata HTCC2501]
Length = 196
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 6/165 (3%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPE-ESFSEGDIKKFEMQAFPH 58
+ +I M M + + GL+APQVG P+RLF+V P E E FS + +K ++AF
Sbjct: 27 LATLIENMWETMYQANGVGLAAPQVGRPIRLFLVDTSPFAEDEDFSPEEQEK--LRAFKR 84
Query: 59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
V+IN +M+ K K EGC S+ ++ V R + L D K + T +G A
Sbjct: 85 -VFINAQMQEETGK-KWAFNEGCLSIPDIREDVTRQDTITLRYQDAEFKEHTETFDGLLA 142
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
R+IQHE DH++G+LFTD + + + N+ G +++ Y M
Sbjct: 143 RVIQHEYDHIEGILFTDHISSLKKRLLKGKLTNISKGKVQIDYKM 187
>gi|394988440|ref|ZP_10381275.1| peptide deformylase [Sulfuricella denitrificans skB26]
gi|393791819|dbj|GAB70914.1| peptide deformylase [Sulfuricella denitrificans skB26]
Length = 177
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 11/127 (8%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M++ M GL+APQ+G+ L++ I + + + + P V INP +
Sbjct: 36 MRDTMDALSGAGLAAPQIGVGLQVVIFGV--------AANPRYPDAELVPDTVLINPALT 87
Query: 68 IL-DYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
L D D+ EGC S+ L+ VPRY++++ G D+ G P T G+ AR++QHE D
Sbjct: 88 PLGDEMDQ--GWEGCLSIPGLRGLVPRYKQLRYQGFDQFGNPIDRTVSGFHARVVQHECD 145
Query: 127 HLDGLLF 133
HL G+L+
Sbjct: 146 HLQGILY 152
>gi|153808041|ref|ZP_01960709.1| hypothetical protein BACCAC_02327 [Bacteroides caccae ATCC 43185]
gi|423218039|ref|ZP_17204535.1| peptide deformylase [Bacteroides caccae CL03T12C61]
gi|149129650|gb|EDM20864.1| peptide deformylase [Bacteroides caccae ATCC 43185]
gi|392627542|gb|EIY21577.1| peptide deformylase [Bacteroides caccae CL03T12C61]
Length = 184
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAF--PH 58
+K +I M M D GL+APQ+GLP+R+ + E + E K F +A+ PH
Sbjct: 27 LKELIANMFETMVHADGVGLAAPQIGLPIRVVTITLDPLSEDYPE--FKGFN-KAYINPH 83
Query: 59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
++ I E +V+ EGC SL + V R K+++ +DE EG+ A
Sbjct: 84 ILEIGGE--------EVSMEEGCLSLPGIHETVKRGNKIRVKYMDEDFVEHEEEVEGYLA 135
Query: 119 RIIQHEMDHLDGLLFTDSM 137
R++QHE DHLDG +F D +
Sbjct: 136 RVMQHEFDHLDGKMFIDHI 154
>gi|154485069|ref|ZP_02027517.1| hypothetical protein EUBVEN_02792 [Eubacterium ventriosum ATCC
27560]
gi|149734022|gb|EDM50141.1| peptide deformylase [Eubacterium ventriosum ATCC 27560]
Length = 165
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 15/136 (11%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVW 61
KI+I M + M + GL+APQVG+ R+F+V D E + + P+ V+
Sbjct: 29 KILIGDMFDTMYEANGVGLAAPQVGILKRIFVVDCGDEEGN------------SVPY-VF 75
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INPE I+D + T EGC S+ VPR +KV++ +E + AEG AR I
Sbjct: 76 INPE--IIDREGVQTGYEGCLSVPGKSGMVPRAQKVKVKAFNENMEEFEMEAEGLLARCI 133
Query: 122 QHEMDHLDGLLFTDSM 137
HE DHLDG+++ D +
Sbjct: 134 LHENDHLDGIVYVDKV 149
>gi|160889625|ref|ZP_02070628.1| hypothetical protein BACUNI_02051 [Bacteroides uniformis ATCC 8492]
gi|270293967|ref|ZP_06200169.1| polypeptide deformylase [Bacteroides sp. D20]
gi|317479180|ref|ZP_07938317.1| polypeptide deformylase [Bacteroides sp. 4_1_36]
gi|423306040|ref|ZP_17284039.1| peptide deformylase [Bacteroides uniformis CL03T00C23]
gi|423309415|ref|ZP_17287405.1| peptide deformylase [Bacteroides uniformis CL03T12C37]
gi|156860617|gb|EDO54048.1| peptide deformylase [Bacteroides uniformis ATCC 8492]
gi|270275434|gb|EFA21294.1| polypeptide deformylase [Bacteroides sp. D20]
gi|316904668|gb|EFV26485.1| polypeptide deformylase [Bacteroides sp. 4_1_36]
gi|392679597|gb|EIY72977.1| peptide deformylase [Bacteroides uniformis CL03T00C23]
gi|392685094|gb|EIY78413.1| peptide deformylase [Bacteroides uniformis CL03T12C37]
Length = 185
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M + GL+APQ+GLP+R+ + + E D +K + A H+
Sbjct: 27 LKELIENMFETMDNAEGVGLAAPQIGLPIRVVTINLDVLSDDLPEYKDFRKAYINA--HI 84
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+ ++ E +V+ EGC SL + V R K+++ LDE +P EG+ AR
Sbjct: 85 LEVSGE--------EVSMDEGCLSLPGIHESVKRGNKIRVQYLDENLEPHDEIIEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHL+G +F D + P
Sbjct: 137 VMQHEFDHLEGKMFIDHLSP 156
>gi|119963025|ref|YP_947573.1| peptide deformylase [Arthrobacter aurescens TC1]
gi|403526781|ref|YP_006661668.1| peptide deformylase Def [Arthrobacter sp. Rue61a]
gi|119949884|gb|ABM08795.1| peptide deformylase [Arthrobacter aurescens TC1]
gi|403229208|gb|AFR28630.1| peptide deformylase Def [Arthrobacter sp. Rue61a]
Length = 190
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 23/136 (16%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M M+ + GL+APQVG+ R+F ++ G ++ IN
Sbjct: 31 LVADMTETMEDVEGAGLAAPQVGVSQRVF---------TYRIGGVEGH---------IIN 72
Query: 64 PEMKIL-DYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
P ++ DY+ D+V EGC S+ L V RYR + TG+D G P S AEG AR
Sbjct: 73 PVLENSEDYQPDEV---EGCLSIPGLGFPVRRYRATRATGVDLNGNPVSVEAEGMLARCF 129
Query: 122 QHEMDHLDGLLFTDSM 137
QHE DHLDG+L+TD +
Sbjct: 130 QHETDHLDGVLYTDRL 145
>gi|264679313|ref|YP_003279220.1| peptide deformylase [Comamonas testosteroni CNB-2]
gi|262209826|gb|ACY33924.1| peptide deformylase [Comamonas testosteroni CNB-2]
Length = 173
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 10/132 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQ+G L++ + +P + + I P V INP + + ++++
Sbjct: 41 GLAAPQIGEDLQMVVFGSGEPNPRYPDAPI-------VPRTVLINPVITPIGEEEQLD-W 92
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
EGC S+ L+A VPR+ KV+ TG D G P T +G+ AR++QHE DHL G L+ M
Sbjct: 93 EGCLSVPGLRAMVPRWNKVRYTGFDIYGDPIDRTVDGFHARVVQHECDHLWGKLY--PMR 150
Query: 139 PKSLECVCWQDI 150
+ C + D+
Sbjct: 151 VRDFTCFGFTDV 162
>gi|384262293|ref|YP_005417480.1| Peptide deformylase [Rhodospirillum photometricum DSM 122]
gi|378403394|emb|CCG08510.1| Peptide deformylase [Rhodospirillum photometricum DSM 122]
Length = 192
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 11/115 (9%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQV +PLR+ + P E S E A P INP + +LD +
Sbjct: 62 GLAAPQVHVPLRVILFHVPA-ERSGGE---------AVPLTTLINPSLTVLD-DTEAAEW 110
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLF 133
EGC SL L +V R R ++ G D G+ AEG+ AR++QHE+DHL+G+L+
Sbjct: 111 EGCLSLPGLTGRVARPRAIRYQGYDLMGRMVVRDAEGFHARVVQHELDHLNGVLY 165
>gi|398987081|ref|ZP_10691847.1| peptide deformylase [Pseudomonas sp. GM24]
gi|399015671|ref|ZP_10717934.1| peptide deformylase [Pseudomonas sp. GM16]
gi|398108135|gb|EJL98120.1| peptide deformylase [Pseudomonas sp. GM16]
gi|398151305|gb|EJM39862.1| peptide deformylase [Pseudomonas sp. GM24]
Length = 179
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGF--------EHSERYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G D G+P TA G+ AR++QH
Sbjct: 85 PLITPLSPLTE-EGFEGCLSVPGLRGAVDRYQQIRYEGFDPKGEPIVRTASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|291296560|ref|YP_003507958.1| peptide deformylase [Meiothermus ruber DSM 1279]
gi|290471519|gb|ADD28938.1| peptide deformylase [Meiothermus ruber DSM 1279]
Length = 194
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 71/123 (57%), Gaps = 10/123 (8%)
Query: 19 GLSAPQVGLPLRLFIVA--FPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYK-DKV 75
GL+APQVG+ RLF+ A D EE E D+K Q + V +NP ++ Y+ +
Sbjct: 46 GLAAPQVGVSQRLFVAAEYLDDDEEEGPEADLKTRVKQLY---VMVNP---VITYRAGRQ 99
Query: 76 TALEGCASLKSLQAK-VPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFT 134
+ LEGC SL L A+ R +V++ DE G+ AEG+ A ++QHE+DHLDG+LF
Sbjct: 100 SILEGCLSLPGLYAEGAQRDLQVRVEYQDEHGQKKVLEAEGYLAVVMQHEIDHLDGILFF 159
Query: 135 DSM 137
M
Sbjct: 160 QRM 162
>gi|346225936|ref|ZP_08847078.1| peptide deformylase [Anaerophaga thermohalophila DSM 12881]
Length = 185
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 13/137 (9%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M D GL+ PQ+GL R+F++ + F E + +K
Sbjct: 28 LKQLIDDMFETMYNADGVGLAGPQIGLSKRIFVIDATPLADDFPELANFRK--------- 78
Query: 60 VWINPEMKILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
V+IN +IL+ DKV EGC SL + +V R KV++ LD EGW+A
Sbjct: 79 VFIN--ARILERAGDKVIDYEGCLSLPGISEEVSRQSKVKIRYLDADFNEHEEIYEGWSA 136
Query: 119 RIIQHEMDHLDGLLFTD 135
R+IQHE DH+ G+LF D
Sbjct: 137 RVIQHEYDHIQGILFVD 153
>gi|325982985|ref|YP_004295387.1| peptide deformylase [Nitrosomonas sp. AL212]
gi|325532504|gb|ADZ27225.1| peptide deformylase [Nitrosomonas sp. AL212]
Length = 177
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M++ M + GL+APQ+G+ L++ I F + + + + D P V +N
Sbjct: 32 LIQDMQDTMAYLNGAGLAAPQIGVSLQVVIFGF-EKNQRYPDAD-------EVPFTVLLN 83
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L +K EGC S+ L+ VPRY + G D+ G G+ AR++QH
Sbjct: 84 PHLTPLS-DEKEDGWEGCLSVPGLRGIVPRYTNLHYQGFDQYGSAIDRNVNGFHARVVQH 142
Query: 124 EMDHLDGLLF 133
E DHL G+L+
Sbjct: 143 ECDHLQGILY 152
>gi|91788452|ref|YP_549404.1| peptide deformylase [Polaromonas sp. JS666]
gi|91697677|gb|ABE44506.1| Peptide deformylase [Polaromonas sp. JS666]
Length = 179
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 8/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +++ M + M+ D GL+APQ+G+ L++ I + + + P V
Sbjct: 29 LHLLVSDMFDTMRAADGAGLAAPQIGVNLQVVIFGADQVNPRYPDAPL-------VPRTV 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L D+ EGC S+ L+ VPR+ ++ TG D+ G P T +G+ AR+
Sbjct: 82 LLNPVITPLS-ADEEEGWEGCLSVPGLRGLVPRFSHIRYTGFDQYGDPIDRTVDGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLMGKLY 153
>gi|229586292|ref|YP_002844793.1| Polypeptide deformylase [Rickettsia africae ESF-5]
gi|228021342|gb|ACP53050.1| Polypeptide deformylase [Rickettsia africae ESF-5]
Length = 224
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFE---MQAFPHMVWINPEMKILDYKDKV 75
GL+APQ+G+ + I A + + ++KK+ P +WINP K + DK
Sbjct: 84 GLAAPQIGISKCIIIFAVHE------DAELKKWHPDLKDTIPKTIWINPSYKPIGI-DKH 136
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
E C S+++ V R++K+ D G AEG+ AR+IQHE+DHL+G +F D
Sbjct: 137 EDYEECFSVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLD 196
Query: 136 SMLPKSL 142
+ PK +
Sbjct: 197 YVAPKKI 203
>gi|389756174|ref|ZP_10191406.1| peptide deformylase [Rhodanobacter sp. 115]
gi|388431872|gb|EIL88916.1| peptide deformylase [Rhodanobacter sp. 115]
Length = 178
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 72/154 (46%), Gaps = 21/154 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M D GL+APQ+G+ L+L I F E + + P +
Sbjct: 30 LDALIADMFDTMHAADGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAPEVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L +D EGC S+ L+ V RY ++ GLD G TAEG+ AR+
Sbjct: 82 LLNPAITPLS-QDMEEGWEGCLSVPGLRGAVSRYTLIRYQGLDPKGAKIDRTAEGFHARV 140
Query: 121 IQHEMDHLDGLL------------FTDSMLPKSL 142
+QHE DHL G L FTD + P L
Sbjct: 141 VQHECDHLIGRLYPSRITDFAKFGFTDVLFPGQL 174
>gi|33591309|ref|NP_878953.1| peptide deformylase [Bordetella pertussis Tohama I]
gi|33598175|ref|NP_885818.1| peptide deformylase [Bordetella parapertussis 12822]
gi|384202597|ref|YP_005588336.1| peptide deformylase [Bordetella pertussis CS]
gi|408414142|ref|YP_006624849.1| peptide deformylase [Bordetella pertussis 18323]
gi|410471743|ref|YP_006895024.1| peptide deformylase [Bordetella parapertussis Bpp5]
gi|427816084|ref|ZP_18983148.1| peptide deformylase [Bordetella bronchiseptica 1289]
gi|39931029|sp|Q7W0Q0.1|DEF1_BORPE RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|39931034|sp|Q7W4K0.1|DEF2_BORPA RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|33566733|emb|CAE38944.1| peptide deformylase [Bordetella parapertussis]
gi|33570951|emb|CAE40418.1| peptide deformylase [Bordetella pertussis Tohama I]
gi|332380711|gb|AEE65558.1| peptide deformylase [Bordetella pertussis CS]
gi|401776312|emb|CCJ61488.1| peptide deformylase [Bordetella pertussis 18323]
gi|408441853|emb|CCJ48350.1| peptide deformylase [Bordetella parapertussis Bpp5]
gi|410567084|emb|CCN24654.1| peptide deformylase [Bordetella bronchiseptica 1289]
Length = 176
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ L+L I F E + + + A P +
Sbjct: 28 LRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIFGF--------ERNDRYPDAPAVPRTI 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP ++ L + EGC S+ L+ VPRYR ++ +G D G+ AEG+ AR+
Sbjct: 80 LCNPVIEPLS-DEMEDGWEGCLSVPGLRGLVPRYRHIRYSGYDPAGQRIEREAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHECDHLIGRLY 151
>gi|308177754|ref|YP_003917160.1| peptide deformylase [Arthrobacter arilaitensis Re117]
gi|307745217|emb|CBT76189.1| peptide deformylase [Arthrobacter arilaitensis Re117]
Length = 187
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 21/141 (14%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M M+ GL+APQVG+ LR+F ++ G Q H+V
Sbjct: 28 LQKLVEDMDQTMENVTGAGLAAPQVGVSLRVF---------TYQTG-------QERGHIV 71
Query: 61 WINPEMKIL-DYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
NP +++ DY++ +EGC S+ + A V R R V+ TG D+ G P +G AR
Sbjct: 72 --NPVLELSEDYQED--QVEGCLSIPGIAAPVRRRRHVKATGFDKFGNPVEIEGDGLLAR 127
Query: 120 IIQHEMDHLDGLLFTDSMLPK 140
QHE DHLDG+LF D + P+
Sbjct: 128 CFQHETDHLDGILFLDRLEPE 148
>gi|344998242|ref|YP_004801096.1| peptide deformylase [Streptomyces sp. SirexAA-E]
gi|344313868|gb|AEN08556.1| peptide deformylase [Streptomyces sp. SirexAA-E]
Length = 166
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M M GL+A Q+G+PLR+F+ PD +E ++ H+V N
Sbjct: 26 LVEDMFATMYAAHGVGLAANQIGVPLRVFVYDCPDDDE-----------VRHLGHLV--N 72
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P D V EGC SL L+A PR+ + + G TG+P T GW AR +QH
Sbjct: 73 PVCVEAD-GITVRGPEGCLSLPGLEAGTPRFDRTVVEGRTVTGEPVRVTGTGWFARCLQH 131
Query: 124 EMDHLDGLLFTD 135
E DHLDG ++ D
Sbjct: 132 ECDHLDGTVYPD 143
>gi|398789302|ref|ZP_10551198.1| polypeptide deformylase [Streptomyces auratus AGR0001]
gi|396991567|gb|EJJ02706.1| polypeptide deformylase [Streptomyces auratus AGR0001]
Length = 186
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M M GL+A Q+G+PLR+F+ PD E+ G +
Sbjct: 38 LERLVEDMFATMYAAQGVGLAANQIGVPLRVFVYDCPDDEDRRHLGHL------------ 85
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + D EGC SL ++A PR+ +TG TG+P + T G+ AR
Sbjct: 86 -VNPRLVEAD-GPVFRGPEGCLSLPGIEAGTPRHDHAVVTGSSVTGEPRTVTGTGFFARC 143
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHE DHLDG L+ D +
Sbjct: 144 LQHECDHLDGGLYVDHL 160
>gi|291285975|ref|YP_003502791.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
gi|290883135|gb|ADD66835.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
Length = 175
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 66/131 (50%), Gaps = 15/131 (11%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
M M GL+APQVG+ RL ++ D +EG + + INPE
Sbjct: 33 NMVETMHARSGVGLAAPQVGISKRLIVI---DTSAGENEGMLLRV----------INPE- 78
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
I+ + + EGC S+ V R KV + +DE GKP + AEG+ AR QHE+D
Sbjct: 79 -IISAEGEQVGEEGCLSIPGEYEPVRRAEKVTVKAMDENGKPYTMEAEGFLARAFQHEID 137
Query: 127 HLDGLLFTDSM 137
HLDG+LF D +
Sbjct: 138 HLDGVLFIDRL 148
>gi|33603069|ref|NP_890629.1| peptide deformylase [Bordetella bronchiseptica RB50]
gi|39931041|sp|Q7WG25.1|DEF2_BORBR RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|33568700|emb|CAE34458.1| peptide deformylase [Bordetella bronchiseptica RB50]
Length = 176
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ L+L I F E + + + A P +
Sbjct: 28 LRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIFGF--------ERNDRYPDAPAVPRTI 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP ++ L + EGC S+ L+ VPRYR ++ +G D G+ AEG+ AR+
Sbjct: 80 LCNPVIEPLS-GEMEDGWEGCLSVPGLRGLVPRYRHIRYSGYDPAGQRIEREAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHECDHLIGRLY 151
>gi|17546118|ref|NP_519520.1| peptide deformylase [Ralstonia solanacearum GMI1000]
gi|23396561|sp|Q8XZJ6.1|DEF2_RALSO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|17428414|emb|CAD15101.1| putative peptide deformylase 2 (pdf 2) (polypeptide deformylase2)
protein [Ralstonia solanacearum GMI1000]
Length = 177
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M GL+APQ+G+ L++ I F D + + + A P V
Sbjct: 28 LTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGF-DRNDRYPDA-------PAVPKTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ L + EGC S+ L+ VPRY +++ TG D+ G AEG+ AR+
Sbjct: 80 LINPTIEPLSDAME-DGWEGCLSVPGLRGVVPRYTRLRYTGYDQHGHAIDRIAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 139 VQHECDHLQGILY 151
>gi|410421560|ref|YP_006902009.1| peptide deformylase [Bordetella bronchiseptica MO149]
gi|427825399|ref|ZP_18992461.1| peptide deformylase [Bordetella bronchiseptica Bbr77]
gi|408448855|emb|CCJ60540.1| peptide deformylase [Bordetella bronchiseptica MO149]
gi|410590664|emb|CCN05756.1| peptide deformylase [Bordetella bronchiseptica Bbr77]
Length = 176
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ L+L I F E + + + A P +
Sbjct: 28 LRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIFGF--------ERNDRYPDAPAVPRTI 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP ++ L + EGC S+ L+ VPRYR ++ +G D G+ AEG+ AR+
Sbjct: 80 LCNPVIEPLS-DEMEDGWEGCLSVPGLRGLVPRYRHIRYSGYDPVGQRIEREAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHECDHLIGRLY 151
>gi|120436619|ref|YP_862305.1| peptide deformylase [Gramella forsetii KT0803]
gi|158512448|sp|A0M3P3.1|DEF_GRAFK RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|117578769|emb|CAL67238.1| peptide deformylase [Gramella forsetii KT0803]
Length = 196
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 81/147 (55%), Gaps = 6/147 (4%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHM--VWINPEMKILDYKDKVT 76
GL+APQVGLP+R+F++ DP + ++ + E + + V+INP++ I + ++
Sbjct: 45 GLAAPQVGLPVRMFMI---DPAPFADDEELDEAEKKVLMDLRKVFINPQI-IEETGEEWA 100
Query: 77 ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
EGC S+ ++ V R + + DE + + T G AAR+IQHE DH++G+LFTD
Sbjct: 101 FSEGCLSIPEVREDVFRQPDITIEYHDENWEKHTETYSGLAARVIQHEYDHIEGILFTDK 160
Query: 137 MLPKSLECVCWQDINLQNGLLELRYYM 163
+ + + N+ G + + Y M
Sbjct: 161 LSSLKKRLIKSKLANISKGKINVEYKM 187
>gi|427722272|ref|YP_007069549.1| peptide deformylase [Leptolyngbya sp. PCC 7376]
gi|427353992|gb|AFY36715.1| peptide deformylase [Leptolyngbya sp. PCC 7376]
Length = 186
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++++ +M M GL+APQVG+ RL +V DPE +E V
Sbjct: 41 IRVLAKEMLQTMYSSYGIGLAAPQVGINKRLIVVD-TDPENPENEA------------YV 87
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE+K KD EGC S+ + +V R +++++ DE GKP A G +R+
Sbjct: 88 LINPEIKKFG-KDMCGFEEGCLSIPGVNFEVLRPDEIEVSYRDELGKPKRIKASGLLSRV 146
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHE+DHL+G++F D +
Sbjct: 147 IQHEIDHLNGVMFVDRV 163
>gi|332529198|ref|ZP_08405162.1| peptide deformylase [Hylemonella gracilis ATCC 19624]
gi|332041421|gb|EGI77783.1| peptide deformylase [Hylemonella gracilis ATCC 19624]
Length = 179
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +++ + + M + GL+APQ+G+ LR+ I + + + P V
Sbjct: 29 LHLLVSDLLDTMHAANGAGLAAPQIGVDLRVVIFGSGQTNPRYPDAPV-------VPRTV 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP + L +++ EGC S+ L+ VPR+++++ G D+ G P T EG+ AR+
Sbjct: 82 LCNPVITPLSDEEQ-HDWEGCLSVPGLRGVVPRWQRIRYQGFDQYGDPIDRTVEGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHLDG L+
Sbjct: 141 VQHECDHLDGKLY 153
>gi|327200558|pdb|3M6O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b)
gi|327200559|pdb|3M6O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b)
gi|327200560|pdb|3M6P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) In Complex With Actinonin
gi|327200561|pdb|3M6P|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) In Complex With Actinonin
gi|335892336|pdb|3O3J|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) In Complex With Inhibitor 6b
gi|335892375|pdb|3PN2|A Chain A, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) (Crystallized In Peg-550-Mme)
gi|335892376|pdb|3PN3|A Chain A, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) In Complex With Inhibitor 21
gi|335892377|pdb|3PN3|B Chain B, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) In Complex With Inhibitor 21
gi|335892378|pdb|3PN4|A Chain A, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) In Complex With Actinonin
(Crystallized In Peg-550-Mme)
Length = 193
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M +VM + D GLSAPQVGL ++L + +P EG +V
Sbjct: 25 LKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVF---NPAGEPGEGK----------EIV 71
Query: 61 WINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+NP KI Y DK+ EGC S + A+V R + V++ D TG+ S + AR
Sbjct: 72 LVNP--KIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPAR 129
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECV 145
I QHE DHL+G+LF D M + L+ +
Sbjct: 130 IFQHEYDHLEGVLFFDRMTDQVLDSI 155
>gi|405375970|ref|ZP_11029984.1| Peptide deformylase [Chondromyces apiculatus DSM 436]
gi|397085731|gb|EJJ16915.1| Peptide deformylase [Myxococcus sp. (contaminant ex DSM 436)]
Length = 168
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 19/134 (14%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ +M MK + G++A QVG PLR+ +V D FE+ +N
Sbjct: 30 LLEEMAESMKEAEGIGIAANQVGEPLRVALVGREDG---------TSFEI--------VN 72
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P+ IL+ +KVT EGC S+ K PR+ KV++ D+TG+ AEG A ++QH
Sbjct: 73 PQ--ILEKTEKVTLEEGCLSVPREWEKCPRFHKVKVRYQDKTGEWHELEAEGRLAHVLQH 130
Query: 124 EMDHLDGLLFTDSM 137
E+DHLDG +F D +
Sbjct: 131 EIDHLDGHVFVDHL 144
>gi|374324701|ref|YP_005077830.1| peptide deformylase [Paenibacillus terrae HPL-003]
gi|357203710|gb|AET61607.1| peptide deformylase [Paenibacillus terrae HPL-003]
Length = 165
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 65/128 (50%), Gaps = 18/128 (14%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M + GL+APQVG+ RL +V D G IK INPE
Sbjct: 35 MADTMYEAEGVGLAAPQVGILKRLIVVDAGD-----EHGLIK-----------MINPE-- 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
I+ + + EGC S+ L V R KV + GLD GK + TA G +R QHE+DH
Sbjct: 77 IVSEEGEQFGAEGCLSIPGLNGDVRRAEKVTVKGLDRDGKAITVTATGLLSRAFQHEIDH 136
Query: 128 LDGLLFTD 135
L+G+LFTD
Sbjct: 137 LNGVLFTD 144
>gi|282895330|ref|ZP_06303532.1| def2 (Formylmethionine deformylase) [Raphidiopsis brookii D9]
gi|281199636|gb|EFA74496.1| def2 (Formylmethionine deformylase) [Raphidiopsis brookii D9]
Length = 178
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 13/121 (10%)
Query: 19 GLSAPQVGLPLRLFIVAF-PDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVT- 76
G++APQV LRLFIVA P+P + EM+ P INP KI+ Y ++T
Sbjct: 48 GIAAPQVAQSLRLFIVASRPNPRYPHAP------EMEPTP---MINP--KIVGYGTEITK 96
Query: 77 ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
EGC S+ ++ VPRY ++Q+ D G + ARI QHE DHL+GL+F D
Sbjct: 97 GWEGCLSVPGIRGLVPRYERIQVEYTDRNGNFQKQELVNFVARIFQHEYDHLEGLVFLDR 156
Query: 137 M 137
+
Sbjct: 157 V 157
>gi|319902632|ref|YP_004162360.1| peptide deformylase [Bacteroides helcogenes P 36-108]
gi|319417663|gb|ADV44774.1| peptide deformylase [Bacteroides helcogenes P 36-108]
Length = 185
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 13/141 (9%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M + GL+APQ+GLP+R+ +V + E D +K
Sbjct: 27 LKELIDNMFETMDNAEGVGLAAPQIGLPIRVVVVNLDVLSDDMPEYKDFRK--------- 77
Query: 60 VWINPEMKILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
V+IN ILD ++V+ EGC SL + V R K+++ LDE EG+ A
Sbjct: 78 VYINAH--ILDVAGEEVSMEEGCLSLPGIHESVRRGDKIRVKYLDENMVAHDEVVEGYLA 135
Query: 119 RIIQHEMDHLDGLLFTDSMLP 139
R++QHE DHLDG +F D + P
Sbjct: 136 RVMQHEFDHLDGKMFIDHISP 156
>gi|15241461|ref|NP_196970.1| peptide deformylase 1B [Arabidopsis thaliana]
gi|30684999|ref|NP_850821.1| peptide deformylase 1B [Arabidopsis thaliana]
gi|39932734|sp|Q9FUZ2.2|DEF1B_ARATH RecName: Full=Peptide deformylase 1B, chloroplastic; Short=AtDEF2;
Short=AtPDF1B; Short=PDF 1B; AltName: Full=Polypeptide
deformylase; Flags: Precursor
gi|7573315|emb|CAB87633.1| putative protein [Arabidopsis thaliana]
gi|15292891|gb|AAK92816.1| unknown protein [Arabidopsis thaliana]
gi|20465677|gb|AAM20307.1| unknown protein [Arabidopsis thaliana]
gi|332004676|gb|AED92059.1| peptide deformylase 1B [Arabidopsis thaliana]
gi|332004677|gb|AED92060.1| peptide deformylase 1B [Arabidopsis thaliana]
Length = 273
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M +VM + D GLSAPQVGL ++L + +P EG +V
Sbjct: 105 LKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVF---NPAGEPGEGK----------EIV 151
Query: 61 WINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+NP KI Y DK+ EGC S + A+V R + V++ D TG+ S + AR
Sbjct: 152 LVNP--KIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPAR 209
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECV 145
I QHE DHL+G+LF D M + L+ +
Sbjct: 210 IFQHEYDHLEGVLFFDRMTDQVLDSI 235
>gi|411118016|ref|ZP_11390397.1| peptide deformylase [Oscillatoriales cyanobacterium JSC-12]
gi|410711740|gb|EKQ69246.1| peptide deformylase [Oscillatoriales cyanobacterium JSC-12]
Length = 188
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K II +M M D GL+APQV + ++ +V +P E+ A P ++
Sbjct: 41 IKQIIREMLQTMYSADGIGLAAPQVAVQKQIIVVDI-EPNEA------------AKPPLI 87
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + I +D EGC S+ + V R +V+++ DETG+P A G A
Sbjct: 88 LINPTI-IKSSRDLSVTQEGCLSIPGVYLDVKRPSEVEVSFKDETGRPQRLKATGLLACC 146
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHE+DHL+G+LF D +
Sbjct: 147 IQHEIDHLNGVLFVDRV 163
>gi|339500918|ref|YP_004698953.1| peptide deformylase [Spirochaeta caldaria DSM 7334]
gi|338835267|gb|AEJ20445.1| Peptide deformylase [Spirochaeta caldaria DSM 7334]
Length = 161
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 18/137 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K + +M M R GL+ PQVGL R+F+V +GD + V
Sbjct: 25 VKALAQEMIETMHRGRGIGLAGPQVGLLQRIFVVQV--------DGDSPR---------V 67
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INP + I + V EGC S+ L A V R KV + +E G+P + A+G AR+
Sbjct: 68 FINPTI-IGTSSEIVQYEEGCLSIPGLYADVTRPEKVTIQAWNERGRPFTLDADGLLARV 126
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHE DHL+G+LF D +
Sbjct: 127 IQHEYDHLEGVLFIDRL 143
>gi|21553551|gb|AAM62644.1| Formylmethionine deformylase [Arabidopsis thaliana]
Length = 273
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M +VM + D GLSAPQVGL ++L + +P EG +V
Sbjct: 105 LKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVF---NPAGEPGEGK----------EIV 151
Query: 61 WINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+NP KI Y DK+ EGC S + A+V R + V++ D TG+ S + AR
Sbjct: 152 LVNP--KIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPAR 209
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECV 145
I QHE DHL+G+LF D M + L+ +
Sbjct: 210 IFQHEYDHLEGVLFFDRMTDQVLDSI 235
>gi|422586228|ref|ZP_16661225.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330880564|gb|EGH14713.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
M302280]
Length = 169
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M M+ + GL+APQ+G+ R+ ++ F EE + G+ P V
Sbjct: 28 LRTLVDDMFETMRDGNGVGLAAPQIGVDARIIVIEFSGNEER-APGE------SPVPPTV 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP I + EGC S+ VPRY ++ T D G AEG+ ARI
Sbjct: 81 LINP--VITSGVGRTEGREGCFSVPGKIGIVPRYATIEYTAQDMDGLNVRGKAEGFHARI 138
Query: 121 IQHEMDHLDGLLFTD 135
IQHE+DHL+G+L+ D
Sbjct: 139 IQHEVDHLNGILYID 153
>gi|194368702|pdb|3CPM|A Chain A, Plant Peptide Deformylase Pdf1b Crystal Structure
Length = 193
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M +VM + D GLSAPQVGL ++L + +P EG +V
Sbjct: 41 LKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVF---NPAGEPGEGK----------EIV 87
Query: 61 WINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+NP KI Y DK+ EGC S + A+V R + V++ D TG+ S + AR
Sbjct: 88 LVNP--KIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPAR 145
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECV 145
I QHE DHL+G+LF D M + L+ +
Sbjct: 146 IFQHEYDHLEGVLFFDRMTDQVLDSI 171
>gi|412341587|ref|YP_006970342.1| peptide deformylase [Bordetella bronchiseptica 253]
gi|408771421|emb|CCJ56222.1| peptide deformylase [Bordetella bronchiseptica 253]
Length = 176
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ L+L I F E + + + A P +
Sbjct: 28 LRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIFGF--------ERNDRYPDAPAVPRTI 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP ++ L + EGC S+ L+ VPRYR ++ +G D G+ AEG+ AR+
Sbjct: 80 LCNPVIEPLS-DEMEDGWEGCLSVPGLRGLVPRYRHIRYSGYDPVGQRIEREAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHECDHLIGRLY 151
>gi|78778455|ref|YP_396567.1| peptide deformylase [Prochlorococcus marinus str. MIT 9312]
gi|123727935|sp|Q31DB4.1|DEF_PROM9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|78711954|gb|ABB49131.1| peptide deformylase [Prochlorococcus marinus str. MIT 9312]
Length = 201
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 16/124 (12%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQ+G+ L ++ FE A ++ INPE I DY + +
Sbjct: 72 IGLAAPQIGINKELLVIDV-------------NFEDSAAEPLILINPE--ITDYGTTLNS 116
Query: 78 LE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
E GC S+ + V R ++L DE G+P A+G AR IQHEMDHL+G+LF D
Sbjct: 117 YEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLLARCIQHEMDHLNGILFVDR 176
Query: 137 MLPK 140
+ K
Sbjct: 177 VTSK 180
>gi|407363339|ref|ZP_11109871.1| peptide deformylase [Pseudomonas mandelii JR-1]
Length = 179
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L+ + EGC S+ L+ V RY++++ G D G+P AEG+ AR++QH
Sbjct: 85 PLITPLNSLME-EGFEGCLSVPGLRGAVDRYQQIRYEGFDPKGQPILRIAEGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|399017274|ref|ZP_10719471.1| peptide deformylase [Herbaspirillum sp. CF444]
gi|398104045|gb|EJL94202.1| peptide deformylase [Herbaspirillum sp. CF444]
Length = 178
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
M +I M M+ + GL+APQ+G+ L+L I F + + + + P V
Sbjct: 29 MDTLIADMFETMRAVNGAGLAAPQIGVNLQLVIFGF--------KKNQRYPDAPEVPETV 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L D EGC S+ L+ VPR+ +++ G DE G T +G+ AR+
Sbjct: 81 LINPTLTQLG-DDMEDGWEGCLSVPGLRGVVPRWSRLRYEGFDEAGNRIDRTVDGFHARV 139
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 140 VQHECDHLWGILY 152
>gi|19552813|ref|NP_600815.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032]
gi|62390483|ref|YP_225885.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032]
gi|145295722|ref|YP_001138543.1| peptide deformylase [Corynebacterium glutamicum R]
gi|417970656|ref|ZP_12611587.1| peptide deformylase [Corynebacterium glutamicum S9114]
gi|418245825|ref|ZP_12872226.1| peptide deformylase [Corynebacterium glutamicum ATCC 14067]
gi|25452910|sp|Q8NQ46.1|DEF1_CORGL RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|21324370|dbj|BAB98994.1| N-formylmethionyl-tRNA deformylase [Corynebacterium glutamicum ATCC
13032]
gi|41325820|emb|CAF21609.1| POLYPEPTIDE DEFORMYLASE [Corynebacterium glutamicum ATCC 13032]
gi|140845642|dbj|BAF54641.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344044952|gb|EGV40626.1| peptide deformylase [Corynebacterium glutamicum S9114]
gi|354510109|gb|EHE83037.1| peptide deformylase [Corynebacterium glutamicum ATCC 14067]
gi|385143720|emb|CCH24759.1| peptide deformylase [Corynebacterium glutamicum K051]
Length = 169
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 15/139 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M+ GL+A QVG+ R+F+ + S EG ++ H+
Sbjct: 28 LSTLIDDMFDTMEDAGGVGLAANQVGVLRRVFVF-----DTSHQEGGLRG-------HV- 74
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L +D T EGC S+ + A+ RY V+L+G D G P + A G AR
Sbjct: 75 -INPVWEPL-TEDTQTGKEGCLSIPDVSAETTRYETVRLSGQDRDGNPVGFVANGLLARC 132
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE DHLDG+LF + P
Sbjct: 133 IQHETDHLDGVLFLKRLDP 151
>gi|326511637|dbj|BAJ91963.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326514272|dbj|BAJ92286.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 121
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V INP++K K EGC S+ +A V R+ V+++GLD G+P A GW AR
Sbjct: 20 VVINPKLKKTS-KRTACFYEGCLSVDGYRAVVERHLDVEVSGLDRNGRPMKVEASGWQAR 78
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
I+QHE DHL+G L+ D M+P++ V ++ L G
Sbjct: 79 ILQHECDHLEGTLYVDKMVPRTFRTVDNLNLPLATG 114
>gi|442324932|ref|YP_007364953.1| peptide deformylase [Myxococcus stipitatus DSM 14675]
gi|441492574|gb|AGC49269.1| peptide deformylase [Myxococcus stipitatus DSM 14675]
Length = 169
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 19/137 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ QM MK + G++A QVG LR+ +V D FE+
Sbjct: 27 LQTLLDQMAESMKEAEGIGIAANQVGESLRVALVGREDG---------TSFEI------- 70
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP+ IL+ K+KVT EGC S+ K PR+ +V++ D TG+ AEG A +
Sbjct: 71 -VNPQ--ILEKKEKVTLEEGCLSVPREWEKCPRFHRVKVRYQDRTGEWHELEAEGRLAHV 127
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHE+DHLDG +F D +
Sbjct: 128 LQHEIDHLDGHVFVDHL 144
>gi|307109178|gb|EFN57416.1| hypothetical protein CHLNCDRAFT_17300, partial [Chlorella
variabilis]
Length = 169
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 74/142 (52%), Gaps = 14/142 (9%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
+M VM D GL+APQVG+ +RL + F+E E A +V +NP++
Sbjct: 41 EMFEVMYEDDGVGLAAPQVGVNVRLMV---------FNEAG----EKGAGDEIVLVNPQI 87
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
I K + EGC S ++ A V R KV++ D +GK + + G+ ARI QHE D
Sbjct: 88 -INQGKARNMFEEGCLSFPNIYADVERPSKVKVKAQDLSGKKFTVSLIGFPARIFQHEYD 146
Query: 127 HLDGLLFTDSMLPKSLECVCWQ 148
HLDG LF D M P+ + V Q
Sbjct: 147 HLDGRLFHDRMAPEVVAGVRQQ 168
>gi|424068911|ref|ZP_17806359.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|407996020|gb|EKG36517.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
Length = 179
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M M GL+APQ+G+ L+L I F E + + E +A P +
Sbjct: 30 LNTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGF--------ERNERYPEAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L + EGC S+ L+ V RY+ ++ G D G+P A+G+ AR+
Sbjct: 82 LINPLITPLGPTLE-EGWEGCLSVPGLRGMVDRYQSIRYEGFDPQGQPIERVAQGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|258489222|gb|ACV72595.1| peptide deformylase [Pseudomonas syringae pv. cerasicola]
Length = 169
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M M+ + GL+APQ+G+ R+ ++ F EE + G+ P V
Sbjct: 28 LRTLVDDMFETMRDGNGVGLAAPQIGVDARIIVIEFSGNEER-APGE------SPVPPTV 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP I + EGC S+ VPRY ++ T D G AEG+ ARI
Sbjct: 81 LINP--VITSGVGRTEGREGCFSVPGKIGIVPRYATIEYTAQDMDGLNVRGKAEGFHARI 138
Query: 121 IQHEMDHLDGLLFTD 135
IQHE+DHL+G+L+ D
Sbjct: 139 IQHEVDHLNGILYID 153
>gi|428780979|ref|YP_007172765.1| peptide deformylase [Dactylococcopsis salina PCC 8305]
gi|428695258|gb|AFZ51408.1| peptide deformylase [Dactylococcopsis salina PCC 8305]
Length = 189
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 14/120 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ ++ ++ DP + A P +V INPE++ + T
Sbjct: 59 IGLAAPQVGVNKQMLVIDC-DPNNT------------ATPPLVLINPEIQTYS-PELATG 104
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + V R VQ+ DE+G+P A G AR+IQHE+DHL G+LF D +
Sbjct: 105 EEGCLSIPGVYLDVVRPEAVQVKFRDESGRPQKMKASGLLARVIQHELDHLHGVLFVDRV 164
>gi|302037138|ref|YP_003797460.1| peptide deformylase [Candidatus Nitrospira defluvii]
gi|300605202|emb|CBK41535.1| Peptide deformylase [Candidatus Nitrospira defluvii]
Length = 176
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 62/119 (52%), Gaps = 15/119 (12%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQVG +L ++ P EG FP V INP ++ ++V
Sbjct: 49 GLAAPQVGRSQQLVVMDCP------GEG--------GFPKTVLINPTIQFYG-PEQVEGW 93
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ L+ KV R V++TGLD KP + A G A IQHE+DHL G LF D M
Sbjct: 94 EGCLSVDGLRGKVTRPSTVRVTGLDRNAKPFDFEASGLYAVCIQHELDHLIGKLFIDRM 152
>gi|209732808|gb|ACI67273.1| Peptide deformylase, mitochondrial precursor [Salmo salar]
Length = 112
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 53 MQAFPHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWT 112
+ P ++IN ++++LD + V E C S+ A VP Y V+++GL+E +P +W
Sbjct: 15 LTTVPLQIFINHQLRVLDGR-TVKFQEACESISGFSATVPHYLSVEVSGLNEKAEPVTWQ 73
Query: 113 AEGWAARIIQHEMDHLDGLLFTDSMLPKSLEC 144
GW R +QHEMDHLDG+ + D M K+
Sbjct: 74 VSGWPVRNLQHEMDHLDGVWYIDRMDSKTFNV 105
>gi|307719714|ref|YP_003875246.1| peptide deformylase [Spirochaeta thermophila DSM 6192]
gi|306533439|gb|ADN02973.1| peptide deformylase [Spirochaeta thermophila DSM 6192]
Length = 163
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 18/140 (12%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M ++M + GL+APQVG+ R FI P+ E +V+IN
Sbjct: 28 VVEGMFDLMHEANGIGLAAPQVGISQRFFICHVPEGEP-----------------LVFIN 70
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE+ + T EGC S+ + A V R V+++ + GKP A+G AR+IQH
Sbjct: 71 PEITATS-PELTTFEEGCLSIPQIYADVVRPAAVEVSAWNLQGKPFRMEADGMLARVIQH 129
Query: 124 EMDHLDGLLFTDSMLPKSLE 143
E DHL+G+LF D + K E
Sbjct: 130 EFDHLNGVLFLDRLPSKKRE 149
>gi|88807213|ref|ZP_01122725.1| peptide deformylase [Synechococcus sp. WH 7805]
gi|88788427|gb|EAR19582.1| peptide deformylase [Synechococcus sp. WH 7805]
Length = 183
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 14/120 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ +L ++ DPE + S P +V INPE+ I T
Sbjct: 54 IGLAAPQVGVHQQLLVIDL-DPETASS------------PPLVLINPEI-ISASASLDTY 99
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + V R VQ++ DE G+P + A+G AR IQHEMDHL G+LF D +
Sbjct: 100 EEGCLSIPGVYLDVVRPSAVQVSFRDEMGRPKTLKADGLMARCIQHEMDHLTGVLFVDRV 159
>gi|418532333|ref|ZP_13098241.1| peptide deformylase [Comamonas testosteroni ATCC 11996]
gi|371450564|gb|EHN63608.1| peptide deformylase [Comamonas testosteroni ATCC 11996]
Length = 179
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQ+G L++ + +P + + I P V INP + + ++++
Sbjct: 47 GLAAPQIGEDLQMVVFGSGEPNPRYPDAPI-------VPRTVLINPVITPIGEEEQLD-W 98
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLF 133
EGC S+ L+A VPR+ KV+ TG D G P T EG+ AR++QHE DHL G L+
Sbjct: 99 EGCLSVPGLRAMVPRWNKVRYTGFDIYGDPIDRTVEGFHARVVQHECDHLWGKLY 153
>gi|350566178|ref|ZP_08934871.1| peptide deformylase [Peptoniphilus indolicus ATCC 29427]
gi|348663021|gb|EGY79641.1| peptide deformylase [Peptoniphilus indolicus ATCC 29427]
Length = 161
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 19/135 (14%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M + M R + G++A QVG+ R IV D EE+ +
Sbjct: 28 VKELISDMYDTMYRENGVGIAAVQVGILKR--IVVIDDREEN---------------RLT 70
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP +K + K + +EGC S+ Q KV RY +++L +DE G + A + A +
Sbjct: 71 LINPVIK--NSKGEQVGMEGCLSIPKKQGKVKRYSELELEYMDEDGNKNEIIASEFLATV 128
Query: 121 IQHEMDHLDGLLFTD 135
IQHE+DHLDG+L++D
Sbjct: 129 IQHELDHLDGILYSD 143
>gi|422874664|ref|ZP_16921149.1| peptide deformylase [Clostridium perfringens F262]
gi|380304305|gb|EIA16594.1| peptide deformylase [Clostridium perfringens F262]
Length = 147
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+KI++ M M + GL+APQVG+ R+F+V D S V
Sbjct: 28 IKILVEDMIETMYENNGVGLAAPQVGILKRIFVVDAMDEAGS----------------RV 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INPE IL+ + T EGC SL V R K+++ LD G AE + AR
Sbjct: 72 FINPE--ILEKSGEQTDEEGCLSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFLARA 129
Query: 121 IQHEMDHLDGLLFTDSML 138
IQHE DHL+G+LF D L
Sbjct: 130 IQHEYDHLEGVLFIDHEL 147
>gi|357031742|ref|ZP_09093685.1| polypeptide deformylase [Gluconobacter morbifer G707]
gi|356414972|gb|EHH68616.1| polypeptide deformylase [Gluconobacter morbifer G707]
Length = 170
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 63/120 (52%), Gaps = 19/120 (15%)
Query: 19 GLSAPQVGLPLRLFIVAFP-----DPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKD 73
GL+APQV PLRLF+ P +PE+S P V INPE+ + D
Sbjct: 47 GLAAPQVHNPLRLFVYHVPANRVANPEDSL------------LPR-VLINPEITPVG-DD 92
Query: 74 KVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLF 133
+ EGC S+ L+ VPR+ K+ GLD G A G+ A ++QHE DHL+G+L+
Sbjct: 93 MMVCSEGCLSIPGLRGDVPRHAKIHYRGLDMNGNVLEGEAAGFHANVLQHEYDHLEGILY 152
>gi|406989021|gb|EKE08848.1| hypothetical protein ACD_16C00248G0030 [uncultured bacterium]
Length = 183
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 3/131 (2%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M+ + + GL+APQV +PLR+ I + + +++ + P V IN
Sbjct: 34 LIRDMEATVSYMNCSGLAAPQVFVPLRVVIFRVLTTTNNPAYELTPEYDPEGVPWTVMIN 93
Query: 64 PEMKILDYKDKVT-ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
P + L D++T E C SL L +V RY ++ L++ G+ + A G+ AR++Q
Sbjct: 94 PTLTPL--SDQITTGWESCLSLPGLMGRVSRYHSIEYRYLNKDGQEEKRQAHGFHARVVQ 151
Query: 123 HEMDHLDGLLF 133
HE DHLDG+L+
Sbjct: 152 HECDHLDGVLY 162
>gi|406986998|gb|EKE07463.1| hypothetical protein ACD_18C00081G0006 [uncultured bacterium]
Length = 165
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 8/128 (6%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M M D GL+APQVG +R+ ++ ++ K A +V INP +
Sbjct: 37 MIKTMYEDDGIGLAAPQVGKNIRVCVIGKDALKQD-------KNNTLAIEDLVLINPTWQ 89
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
++ K +V LEGC S+ KV RY+ V + LD G+ + A + AR++QHE+DH
Sbjct: 90 KINKKTQVD-LEGCLSVPKTYGKVKRYKNVYVEALDRHGEKMEFEANNFFARVVQHEVDH 148
Query: 128 LDGLLFTD 135
L+G+LF D
Sbjct: 149 LNGVLFID 156
>gi|169831745|ref|YP_001717727.1| peptide deformylase [Candidatus Desulforudis audaxviator MP104C]
gi|238688341|sp|B1I504.1|DEF_DESAP RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|169638589|gb|ACA60095.1| peptide deformylase [Candidatus Desulforudis audaxviator MP104C]
Length = 154
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 18/130 (13%)
Query: 6 LQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPE 65
+ + + M+R GL+APQ+G+ R+ +V DPE++ +V INPE
Sbjct: 33 VNLVDTMRRSGGVGLAAPQIGVSKRVIVVE--DPEKN---------------PIVLINPE 75
Query: 66 MKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEM 125
+ L+ DK TA EGC S+ + +V R + + G + GK ++ EG+ AR QHE+
Sbjct: 76 IVRLE-GDKETAEEGCLSVPGVWGQVERRMCLTVRGYNLEGKQVAYLVEGFTARAFQHEI 134
Query: 126 DHLDGLLFTD 135
DHLDG++F D
Sbjct: 135 DHLDGIVFLD 144
>gi|304440681|ref|ZP_07400565.1| peptide deformylase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304370868|gb|EFM24490.1| peptide deformylase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 160
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 19/135 (14%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
MK +I M M + GL+APQVG+ R I+ D Q
Sbjct: 28 MKTLISDMFETMDYSNGVGLAAPQVGILRR--IITLDD---------------QDGLRGA 70
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INP KI++ + EGC S+ Q V R + +T +DE G+ + AEG+ ARI
Sbjct: 71 FINP--KIIEKDGEQVGPEGCLSVPGKQGTVNRANHIVVTYMDENGEEKTLEAEGFTARI 128
Query: 121 IQHEMDHLDGLLFTD 135
QHE+DHL+G+L+TD
Sbjct: 129 FQHEIDHLNGILYTD 143
>gi|182625873|ref|ZP_02953639.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
gi|177908907|gb|EDT71399.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
Length = 147
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K+++ M M + GL+APQVG+ R+F+V D S V
Sbjct: 28 IKVLVEDMIETMHENNGVGLAAPQVGILKRIFVVDAMDGAGS----------------RV 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INPE IL+ + T EGC SL V R K+++ LD G AE + AR
Sbjct: 72 FINPE--ILEKSGEQTDEEGCLSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFLARA 129
Query: 121 IQHEMDHLDGLLFTDSML 138
IQHE DHL+G+LF D L
Sbjct: 130 IQHEYDHLEGVLFIDHEL 147
>gi|386347804|ref|YP_006046053.1| Peptide deformylase [Spirochaeta thermophila DSM 6578]
gi|339412771|gb|AEJ62336.1| Peptide deformylase [Spirochaeta thermophila DSM 6578]
Length = 163
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 18/140 (12%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M ++M + GL+APQVG+ R FI P+ E +V+IN
Sbjct: 28 VVEGMFDLMHEANGIGLAAPQVGISQRFFICHVPEGEP-----------------LVFIN 70
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE+ + T EGC S+ + A V R V+++ + GKP A+G AR+IQH
Sbjct: 71 PEITATS-PELATFEEGCLSIPQIYADVVRPAAVEVSAWNLQGKPFRMEADGLLARVIQH 129
Query: 124 EMDHLDGLLFTDSMLPKSLE 143
E DHL+G+LF D + K E
Sbjct: 130 EFDHLNGVLFLDRLPSKKRE 149
>gi|352096053|ref|ZP_08957000.1| Peptide deformylase [Synechococcus sp. WH 8016]
gi|351677409|gb|EHA60558.1| Peptide deformylase [Synechococcus sp. WH 8016]
Length = 182
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ +L ++ FE + P +V INPE+ T
Sbjct: 52 IGLAAPQVGVHQQLLVIDL-------------DFETPSTPPLVLINPEITTCSASVD-TY 97
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + V R +QL+ DE G+P + A+G AR IQHEMDHL G+LF D +
Sbjct: 98 EEGCLSIPGVYLDVVRPTAIQLSFRDEMGRPRTMKADGLMARCIQHEMDHLRGVLFVDRV 157
>gi|33860628|ref|NP_892189.1| peptide deformylase [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|39930841|sp|Q7V3K7.1|DEF_PROMP RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|33633570|emb|CAE18527.1| putative formylmethionine deformylase [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length = 201
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 16/124 (12%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQ+G+ L ++ FE A ++ INPE I DY + +
Sbjct: 72 IGLAAPQIGIKKELLVIDV-------------NFEDAAAEPLILINPE--ITDYGTTLNS 116
Query: 78 LE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
E GC S+ + V R ++L DE G+P A+G AR IQHEMDHL+G+LF D
Sbjct: 117 YEEGCLSIPGVYLNVVRPSTIKLRFRDEMGRPRKMKADGLLARCIQHEMDHLNGVLFVDR 176
Query: 137 MLPK 140
+ K
Sbjct: 177 VTSK 180
>gi|386821244|ref|ZP_10108460.1| peptide deformylase [Joostella marina DSM 19592]
gi|386426350|gb|EIJ40180.1| peptide deformylase [Joostella marina DSM 19592]
Length = 196
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 8/166 (4%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV---AFPDPEESFSEGDIKKFEMQAFP 57
+ ++I M M GL+APQ+GLP+RLF++ AF D +E SE + K ++ F
Sbjct: 27 LDVLIENMFETMYNAYGVGLAAPQIGLPIRLFVIDATAFADDDE-LSEKE--KEQLTGF- 82
Query: 58 HMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWA 117
V+INP + I + ++ T EGC S+ ++ V R +++ D +G A
Sbjct: 83 KKVFINPTI-IEETGEEWTFNEGCLSIPDIREDVTRNAIIKIEYYDADFNKHIEEFDGLA 141
Query: 118 ARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
AR+IQHE DH++G+LFTD + + + ++ G +++ Y M
Sbjct: 142 ARVIQHEYDHIEGVLFTDKLSSLKKRLLKRKLTSISKGKIKIDYKM 187
>gi|373954766|ref|ZP_09614726.1| Peptide deformylase [Mucilaginibacter paludis DSM 18603]
gi|373891366|gb|EHQ27263.1| Peptide deformylase [Mucilaginibacter paludis DSM 18603]
Length = 190
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 11/146 (7%)
Query: 19 GLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVGL +RLF++ A P ++ D KK V+IN ++ + + ++ +
Sbjct: 46 GLAAPQVGLSMRLFVIDATPFDDDEPELKDFKK---------VFINAKV-LEETGEEWSF 95
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ ++ V R V+L+ DE K T +G AAR+IQHE DH++G LFTD +
Sbjct: 96 NEGCLSIPDIREDVYRKPVVRLSYYDENWKHHEETFKGLAARVIQHEYDHIEGKLFTDKL 155
Query: 138 LPKSLECVCWQDINLQNGLLELRYYM 163
P + + ++ G++ + Y M
Sbjct: 156 SPLRKRLIQKKLTDISKGIVNVEYKM 181
>gi|434399992|ref|YP_007133996.1| peptide deformylase [Stanieria cyanosphaera PCC 7437]
gi|428271089|gb|AFZ37030.1| peptide deformylase [Stanieria cyanosphaera PCC 7437]
Length = 187
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I +M M D GL+APQVG+ +L ++ + + P +V
Sbjct: 41 IRQLIKEMLQTMYSADGIGLAAPQVGVNKQLIVIDC-------------ELDNPDHPPLV 87
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP++ ++ +T EGC S+ + +V R V+++ DE GKP A G AR
Sbjct: 88 LINPKITRFSSQECITE-EGCLSIPGVYLEVTRPEAVEVSFKDEQGKPRKLQASGLLARA 146
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHEMDHL+G++F D +
Sbjct: 147 IQHEMDHLNGVMFVDRV 163
>gi|375309206|ref|ZP_09774487.1| peptide deformylase [Paenibacillus sp. Aloe-11]
gi|375078515|gb|EHS56742.1| peptide deformylase [Paenibacillus sp. Aloe-11]
Length = 165
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 65/128 (50%), Gaps = 18/128 (14%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M + GL+APQVG+ RL +V D G IK INPE
Sbjct: 35 MADTMYEAEGVGLAAPQVGILKRLIVVDAGD-----EHGLIK-----------MINPE-- 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
I+ + + EGC S+ L V R KV + GLD GK + TA G +R QHE+DH
Sbjct: 77 IVAEEGEQLGPEGCLSIPGLNGDVRRAEKVTVKGLDREGKAITVTATGLLSRAFQHEIDH 136
Query: 128 LDGLLFTD 135
L+G+LFTD
Sbjct: 137 LNGVLFTD 144
>gi|422644075|ref|ZP_16707213.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|330957627|gb|EGH57887.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 179
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M M GL+APQ+G+ L+L I F E + + + +A P +
Sbjct: 30 LNTLIADMFETMHSVSGVGLAAPQIGVDLQLVIFGF--------ERNERYPQAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L + EGC S+ L+ V RY+ ++ G D GKP A G+ AR+
Sbjct: 82 LLNPVITPLS-PELEEGWEGCLSVPGLRGMVDRYQSIRYEGFDPEGKPIERIAHGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|417839631|ref|ZP_12485804.1| Peptide deformylase [Haemophilus haemolyticus M19107]
gi|341951997|gb|EGT78540.1| Peptide deformylase [Haemophilus haemolyticus M19107]
Length = 169
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I+ M + M + + GL+APQV + R+ + EGD K +V
Sbjct: 28 IRKIVDDMFDTMYQEEGIGLAAPQVDILQRIITIDV--------EGDKKN-------QLV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE IL + + EGC S+ +A VPR KV++ LD GK + A+G A
Sbjct: 73 LINPE--ILASEGETGIEEGCLSIPGFRALVPRKEKVKVRALDRDGKEFTLDADGLLAIC 130
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHL+G+LF D + P
Sbjct: 131 IQHEIDHLNGILFVDYLSP 149
>gi|187251316|ref|YP_001875798.1| N-formylmethionyl-tRNA deformylase [Elusimicrobium minutum Pei191]
gi|238058210|sp|B2KD65.1|DEF_ELUMP RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|186971476|gb|ACC98461.1| N-Formylmethionyl-tRNA deformylase [Elusimicrobium minutum Pei191]
Length = 176
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
I+ M + F GLSA Q+GL R+ ++ P+ K E Q F V IN
Sbjct: 33 ILQDMHDTCMSFQGAGLSANQIGLTHRIAMIFIPE--------KTPKGEAQKFKRYVVIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P I+ K VT EGC SL L ++ R + + L+E G P A+G+ A+ +QH
Sbjct: 85 PV--IVSKKGCVTDEEGCLSLPGLWVEIERAESIVVHCLNEKGLPVEIHAKGFLAKALQH 142
Query: 124 EMDHLDGLLFTDSMLPK 140
E+DHLDG +F D PK
Sbjct: 143 EIDHLDGKIFIDHADPK 159
>gi|406972802|gb|EKD96461.1| hypothetical protein ACD_24C00035G0004 [uncultured bacterium]
Length = 175
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 76/130 (58%), Gaps = 21/130 (16%)
Query: 10 NVMKRFDLFGLSAPQVGLPLRLFIV-----AFPDPEESFSEGDIKKFEMQAFPHMVWINP 64
N M+ +L G++APQ+G L++F+ + +P+E DI + V++NP
Sbjct: 38 NTMREENLIGMAAPQIGKSLQIFVTEIRKTKYRNPQEI----DILR---------VFVNP 84
Query: 65 EMKILDYKDKVTALEGCASLK--SLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
++ I K+ ++ EGC SL+ +L K+ R +K+ + G ++ G+ S AEG +R+IQ
Sbjct: 85 QI-INCSKEVISGFEGCGSLREPALFVKITRPKKITVNGYNQLGESFSLDAEGLLSRVIQ 143
Query: 123 HEMDHLDGLL 132
HE+DHL G++
Sbjct: 144 HEIDHLQGIV 153
>gi|407646795|ref|YP_006810554.1| peptide deformylase [Nocardia brasiliensis ATCC 700358]
gi|407309679|gb|AFU03580.1| peptide deformylase [Nocardia brasiliensis ATCC 700358]
Length = 197
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 19/139 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ + + M G++APQ+G+ LR+F+ D A H+V
Sbjct: 37 LQQLVTDLTDTMHDDGGVGMAAPQIGVGLRVFVYDTHD----------------AAGHLV 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP+ +++ +++V EGC S+ ++ R +V+ +G+D G P +TAEG AR
Sbjct: 81 --NPQWEVIGDEEQV-GPEGCLSIPGVRHDTRRALRVRASGVDMHGAPVEFTAEGLLARC 137
Query: 121 IQHEMDHLDGLLFTDSMLP 139
+QHE DHLDG+LF D + P
Sbjct: 138 VQHETDHLDGVLFIDRLDP 156
>gi|297811599|ref|XP_002873683.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319520|gb|EFH49942.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 273
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 78/146 (53%), Gaps = 16/146 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M +VM + D GLSAPQVGL ++L + +P EG+ +V
Sbjct: 105 LKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVF---NPAGEPGEGE----------EIV 151
Query: 61 WINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+NP +K Y DK+ EGC S + A+V R + V++ D TG+ S + AR
Sbjct: 152 LVNPIIK--KYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPAR 209
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECV 145
I QHE DHL+G+LF D M + L+ +
Sbjct: 210 IFQHEYDHLEGVLFFDRMTDQVLDSI 235
>gi|189499854|ref|YP_001959324.1| peptide deformylase [Chlorobium phaeobacteroides BS1]
gi|238692288|sp|B3EPG5.1|DEF_CHLPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|189495295|gb|ACE03843.1| peptide deformylase [Chlorobium phaeobacteroides BS1]
Length = 185
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 76/155 (49%), Gaps = 20/155 (12%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ + GL+APQVG+ LRL +V S +EG +A MV IN
Sbjct: 30 LISNMLESMRNAEGIGLAAPQVGVSLRLIVVDL-----SLAEG------YEAASPMVVIN 78
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P IL K + EGC S+ ++ V R +QL D + + AAR+IQH
Sbjct: 79 PH--ILSVKSFNSMEEGCLSIPDVRGDVVRPSAIQLKYRDRNFEECIGEFDRLAARVIQH 136
Query: 124 EMDHLDGLLFTDSM-------LPKSLECVCWQDIN 151
E+DHLDG LF D M + K L+ + +IN
Sbjct: 137 EIDHLDGTLFVDRMQRRDRRKIQKELDALSRGEIN 171
>gi|224539752|ref|ZP_03680291.1| hypothetical protein BACCELL_04661 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518630|gb|EEF87735.1| hypothetical protein BACCELL_04661 [Bacteroides cellulosilyticus
DSM 14838]
Length = 184
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M + GL+APQ+GLP+R+ +V E + E K F
Sbjct: 27 LKELIANMFETMDHAEGVGLAAPQIGLPIRVVVVDLDVLSEDYPE--YKNFRK------A 78
Query: 61 WINPEMKILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+INP IL+ ++++ EGC SL + V R ++ +T +DE EG+ AR
Sbjct: 79 YINPH--ILEVSGEEISMEEGCLSLPGIHESVKRGNRIHVTYMDENMVEHDEVVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHL+G +F D + P
Sbjct: 137 VMQHEFDHLEGKMFIDHLSP 156
>gi|226940980|ref|YP_002796054.1| Peptide deformylase [Laribacter hongkongensis HLHK9]
gi|226715907|gb|ACO75045.1| Peptide deformylase [Laribacter hongkongensis HLHK9]
Length = 183
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 11 VMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILD 70
MK GL+APQ+G L++ + +P + + I P V INP + L
Sbjct: 39 TMKVHSGAGLAAPQIGENLQVVVFGTGEPNPRYPDAGI-------VPPTVLINPIVTPLG 91
Query: 71 YKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDG 130
+ EGC SL L+ VPRY V+ G D G+P T EG+ AR++QHE DHL G
Sbjct: 92 ASME-DGWEGCLSLPGLRGAVPRYASVRYQGFDLYGQPIDRTVEGFHARVVQHECDHLWG 150
Query: 131 LL------------FTDSMLPKSLEC 144
L FTD++ P E
Sbjct: 151 FLYPMRMKDMSRFGFTDTLFPAIAEV 176
>gi|186684172|ref|YP_001867368.1| peptide deformylase [Nostoc punctiforme PCC 73102]
gi|186466624|gb|ACC82425.1| peptide deformylase [Nostoc punctiforme PCC 73102]
Length = 187
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ +M M D GL+APQVG+ +L ++ +PE + A P +V
Sbjct: 41 LRQMVREMLQTMYSKDGIGLAAPQVGIHKQLIVIDL-EPENA------------ANPPLV 87
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP +K + +D A EGC S+ ++ V R V++ DE G+P + A R
Sbjct: 88 LINPTIKQVS-RDISVAEEGCLSIPNVYLDVKRPEVVEIAYKDEYGRPRTLKANDLLGRC 146
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHEMDHL+G++F D +
Sbjct: 147 IQHEMDHLNGVVFVDRV 163
>gi|332525977|ref|ZP_08402118.1| peptide deformylase [Rubrivivax benzoatilyticus JA2]
gi|332109528|gb|EGJ10451.1| peptide deformylase [Rubrivivax benzoatilyticus JA2]
Length = 188
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ M M GL+APQVG+ L+L + F E + + E A P V
Sbjct: 39 LHALVADMIETMAAAHGAGLAAPQVGVDLQLVVFGF--------ERNERYPEAPAVPMTV 90
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP + L + V EGC S+ L+ VPR+ +++ TG D G+P AEG+ AR+
Sbjct: 91 LCNPVITPLS-DETVDGWEGCLSVPGLRGVVPRFARIRYTGFDAQGRPIEREAEGFHARV 149
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHE DHL G L+ M
Sbjct: 150 VQHECDHLIGRLYPTRM 166
>gi|257068452|ref|YP_003154707.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM
4810]
gi|256559270|gb|ACU85117.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM
4810]
Length = 240
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 9/140 (6%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVA--FPDPEESFSEGDIKKFEMQAFPHMVWINPE 65
M M+ GL+APQVGLPL +++ + D GD+ E + P ++P
Sbjct: 67 MTVTMRAAPGVGLAAPQVGLPLSFYVIEDRYADEPGEDEVGDL--LERRPLPLRALLDPV 124
Query: 66 MKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAE----GWAARII 121
++ L + +V A EGC S+ Q+ VPR R+V L + G E GW ARI+
Sbjct: 125 LEPLGTQ-RVYAFEGCLSVDGWQSIVPRSRRVLLRATELLGDGSLREVEEEHVGWTARIL 183
Query: 122 QHEMDHLDGLLFTDSMLPKS 141
QHE DHL G L D +P+S
Sbjct: 184 QHETDHLAGTLCHDLCVPRS 203
>gi|182411922|ref|YP_001816988.1| peptide deformylase [Opitutus terrae PB90-1]
gi|238692904|sp|B1ZMD5.1|DEF_OPITP RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|177839136|gb|ACB73388.1| peptide deformylase [Opitutus terrae PB90-1]
Length = 192
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 1/136 (0%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS-EGDIKKFEMQAFPHMVWINPE 65
+M M+ GL+A Q+G P++L +V E F+ E D K + M+ NPE
Sbjct: 33 EMLATMQEAAGIGLAAQQIGRPVQLCVVDLRRAEIDFTWELDGAKPPLDLIMPMIITNPE 92
Query: 66 MKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEM 125
+ D EGC S ++ VPR + + DE G P + +G AR IQHE+
Sbjct: 93 ITPDRETDVYLVEEGCLSFPKIRGDVPRPDAITVRYQDEHGTPHTLHCDGLLARCIQHEV 152
Query: 126 DHLDGLLFTDSMLPKS 141
DHL+G+LF D M K+
Sbjct: 153 DHLNGVLFIDRMEKKT 168
>gi|168207271|ref|ZP_02633276.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
gi|170661355|gb|EDT14038.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
Length = 147
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+KI++ M M + GL+APQVG+ R+F+V D S V
Sbjct: 28 IKILVEDMIETMYENNGVGLAAPQVGILKRIFVVDAMDGAGS----------------RV 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INPE IL+ + T EGC SL V R K+++ LD G AE + AR
Sbjct: 72 FINPE--ILEKSGEQTDEEGCLSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFLARA 129
Query: 121 IQHEMDHLDGLLFTDSML 138
IQHE DHL+G+LF D L
Sbjct: 130 IQHEYDHLEGVLFIDHEL 147
>gi|78066802|ref|YP_369571.1| peptide deformylase [Burkholderia sp. 383]
gi|77967547|gb|ABB08927.1| Peptide deformylase [Burkholderia sp. 383]
Length = 177
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 11/131 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
I+ M M + GL+APQ+G+ L+L I F G+ ++ + P V I
Sbjct: 31 IVADMFETMHHANGAGLAAPQIGIGLQLIIFGF---------GNNNRYPDAPPVPETVLI 81
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP+++ + D EGC S+ ++ V RY KV+ +G D+ G+ A+G+ AR++Q
Sbjct: 82 NPKVEYMP-PDMEEGWEGCLSVPGMRGVVSRYAKVRYSGFDQYGEKIDRVADGFHARVVQ 140
Query: 123 HEMDHLDGLLF 133
HE DHL G L+
Sbjct: 141 HEYDHLIGKLY 151
>gi|424073341|ref|ZP_17810759.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407996322|gb|EKG36801.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
Length = 179
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M M GL+APQ+G+ L+L I F E + + E +A P +
Sbjct: 30 LDALIADMFETMHSVGGVGLAAPQIGIDLQLVIFGF--------ERNERYPEAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L + EGC S+ L+ V RY+ ++ G D G+P A+G+ AR+
Sbjct: 82 LINPLITPLGPTLE-EGWEGCLSVPGLRGMVDRYQSIRYEGFDPQGQPIERVAQGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|323142780|ref|ZP_08077493.1| peptide deformylase [Succinatimonas hippei YIT 12066]
gi|322417425|gb|EFY08046.1| peptide deformylase [Succinatimonas hippei YIT 12066]
Length = 175
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 13/120 (10%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQ+G+ R+ ++ P EE +G K +V INP KI + +V +
Sbjct: 45 IGLAAPQIGIEKRIVVIDIP--EEDGKQGKNK---------LVLINP--KITAKEGEVAS 91
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ +A++ RY K+ L D G+ + A+G A +QHE+DHLDG LF D +
Sbjct: 92 EEGCLSVPEYRAEIKRYEKITLECQDLNGQKQIYEADGLLAICMQHELDHLDGKLFIDYL 151
>gi|327312425|ref|YP_004327862.1| peptide deformylase [Prevotella denticola F0289]
gi|326944165|gb|AEA20050.1| peptide deformylase [Prevotella denticola F0289]
Length = 214
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 67/123 (54%), Gaps = 10/123 (8%)
Query: 16 DLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
D GL+APQ+G +R+ ++ ++F E + F H +IN + LD +
Sbjct: 70 DGVGLAAPQIGKSIRVVVIDLDVLSDTFPE-------YKDFRH-AFINGHILELDDSETD 121
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDET-GKPDSWTAEGWAARIIQHEMDHLDGLLFT 134
T EGC SL + V R R++ + LDE + D W +G+ AR+IQHE DHLDG +FT
Sbjct: 122 TMEEGCLSLPGIHESVTRARRIHVKYLDENLTEHDEW-VDGYLARVIQHEFDHLDGRVFT 180
Query: 135 DSM 137
D +
Sbjct: 181 DHL 183
>gi|156743414|ref|YP_001433543.1| peptide deformylase [Roseiflexus castenholzii DSM 13941]
gi|254767599|sp|A7NPM9.1|DEF_ROSCS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|156234742|gb|ABU59525.1| peptide deformylase [Roseiflexus castenholzii DSM 13941]
Length = 185
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 73/139 (52%), Gaps = 6/139 (4%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M M + GL+APQ+G+ RL ++A P E +G K E+ V
Sbjct: 32 LKQLVADMFETMHAANGVGLAAPQIGVTQRLAVIAIPPMMEERPDG--TKVEVAPEQTFV 89
Query: 61 WINPEM-KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDS-WTAEGWAA 118
INPE+ K D +D LEGC SL +VPR V + D G+ A G A
Sbjct: 90 LINPEIVKASDQED--VGLEGCLSLPGWYGEVPRAAWVTVEYTDLNGRRQRIRRATGLLA 147
Query: 119 RIIQHEMDHLDGLLFTDSM 137
R +QHE+DHLDG+LFT+ +
Sbjct: 148 RALQHEIDHLDGVLFTERI 166
>gi|390453284|ref|ZP_10238812.1| peptide deformylase [Paenibacillus peoriae KCTC 3763]
Length = 165
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 66/128 (51%), Gaps = 18/128 (14%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M + GL+APQVG+ RL +V D +G IK INPE
Sbjct: 35 MADTMYEAEGVGLAAPQVGILKRLIVVDAGD-----EQGLIK-----------MINPE-- 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
I+ + + EGC S+ L V R KV + GLD GK + TA G +R QHE+DH
Sbjct: 77 IVAEEGEQLGPEGCLSIPGLNGDVRRAEKVTVKGLDREGKVITVTATGLLSRAFQHEIDH 136
Query: 128 LDGLLFTD 135
L+G+LFTD
Sbjct: 137 LNGVLFTD 144
>gi|416905341|ref|ZP_11930787.1| peptide deformylase [Burkholderia sp. TJI49]
gi|325529284|gb|EGD06233.1| peptide deformylase [Burkholderia sp. TJI49]
Length = 177
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
I+ M M + GL+APQ+G+ L++ I F G ++ E P V I
Sbjct: 31 IVADMFETMHHANGAGLAAPQIGVGLQIIIFGF---------GSNNRYPEAPPVPETVLI 81
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP+++ + D EGC S+ ++ V RY KV+ +G D+ G AEG+ AR++Q
Sbjct: 82 NPKLEYMP-PDMEEGWEGCLSVPGMRGVVSRYAKVRYSGFDQFGAKLDRVAEGFHARVVQ 140
Query: 123 HEMDHLDGLLF 133
HE DHL G L+
Sbjct: 141 HEYDHLIGKLY 151
>gi|289773445|ref|ZP_06532823.1| polypeptide deformylase [Streptomyces lividans TK24]
gi|289703644|gb|EFD71073.1| polypeptide deformylase [Streptomyces lividans TK24]
Length = 218
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
GL+APQVG+ LR+ ++ P P E + G + + P V +NP + +
Sbjct: 68 GLAAPQVGVGLRVAVIEDPAPVPDEVRVARGRVPQ------PFRVLVNPSYEPAG-AGRA 120
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+ QA V R+ +V+L DE G+ GW ARI+QHE DHLDG L+ D
Sbjct: 121 AFFEGCLSVPGWQAVVARHAEVRLRAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLD 180
Query: 136 SMLPKSL 142
+SL
Sbjct: 181 RAELRSL 187
>gi|113955292|ref|YP_731667.1| peptide deformylase [Synechococcus sp. CC9311]
gi|122945537|sp|Q0I7A5.1|DEF_SYNS3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|113882643|gb|ABI47601.1| peptide deformylase [Synechococcus sp. CC9311]
Length = 202
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ +L ++ FE + P +V INPE+ T
Sbjct: 72 IGLAAPQVGVHQQLLVIDL-------------DFETPSTPPLVLINPEITTCSASVD-TY 117
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + V R +QL+ DE G+P + A+G AR IQHEMDHL G+LF D +
Sbjct: 118 EEGCLSIPGVYLDVVRPTAIQLSFRDEMGRPRTMKADGLMARCIQHEMDHLRGVLFVDRV 177
>gi|66047008|ref|YP_236849.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a]
gi|63257715|gb|AAY38811.1| Formylmethionine deformylase [Pseudomonas syringae pv. syringae
B728a]
Length = 179
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M M GL+APQ+G+ L+L I F E + + E +A P +
Sbjct: 30 LDTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGF--------ERNERYPEAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L + EGC S+ L+ V RY+ ++ G D G+P A G+ AR+
Sbjct: 82 LINPLITPLSPTLE-EGWEGCLSVPGLRGMVDRYQSIRYEGFDPQGQPIERVAHGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|21219403|ref|NP_625182.1| peptide deformylase [Streptomyces coelicolor A3(2)]
gi|23396576|sp|Q9RD27.1|DEF1_STRCO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|6562865|emb|CAB62674.1| polypeptide deformylase [Streptomyces coelicolor A3(2)]
Length = 218
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
GL+APQVG+ LR+ ++ P P E + G + + P V +NP + +
Sbjct: 68 GLAAPQVGVGLRVAVIEDPAPVPDEVRVARGRVPQ------PFRVLVNPSYEPAG-AGRA 120
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+ QA V R+ +V+L DE G+ GW ARI+QHE DHLDG L+ D
Sbjct: 121 AFFEGCLSVPGWQAVVARHAEVRLRAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLD 180
Query: 136 SMLPKSL 142
+SL
Sbjct: 181 RAELRSL 187
>gi|325852042|ref|ZP_08171125.1| peptide deformylase [Prevotella denticola CRIS 18C-A]
gi|325484598|gb|EGC87514.1| peptide deformylase [Prevotella denticola CRIS 18C-A]
Length = 214
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 67/123 (54%), Gaps = 10/123 (8%)
Query: 16 DLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
D GL+APQ+G +R+ ++ ++F E + F H +IN + LD +
Sbjct: 70 DGVGLAAPQIGKSIRVVVIDLDVLSDTFPE-------YKDFRH-AFINGHILELDDSETD 121
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDET-GKPDSWTAEGWAARIIQHEMDHLDGLLFT 134
T EGC SL + V R R++ + LDE + D W +G+ AR+IQHE DHLDG +FT
Sbjct: 122 TMEEGCLSLPGIHESVTRARRIHVKYLDENLTEHDEW-VDGYLARVIQHEFDHLDGRVFT 180
Query: 135 DSM 137
D +
Sbjct: 181 DHL 183
>gi|52841298|ref|YP_095097.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|148360273|ref|YP_001251480.1| polypeptide deformylase [Legionella pneumophila str. Corby]
gi|296106683|ref|YP_003618383.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy]
gi|52628409|gb|AAU27150.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|148282046|gb|ABQ56134.1| polypeptide deformylase [Legionella pneumophila str. Corby]
gi|295648584|gb|ADG24431.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy]
Length = 172
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M +M G++APQ+G+ R+ + + E I P
Sbjct: 29 LKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFGTDYTKRRKPEYPI--------PDTA 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP +KIL ++ T EGC + L +VPR +++ +G D G + A G ARI
Sbjct: 81 LINPSLKILS-QEIQTGYEGCLNCGELMGEVPRAMEIEYSGFDIDGNRITKKASGLEARI 139
Query: 121 IQHEMDHLDGLLFTD 135
+QHE+DHLDG LF D
Sbjct: 140 LQHEIDHLDGFLFLD 154
>gi|423682117|ref|ZP_17656956.1| peptide deformylase [Bacillus licheniformis WX-02]
gi|383438891|gb|EID46666.1| peptide deformylase [Bacillus licheniformis WX-02]
Length = 160
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 18/134 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M + M D GL+APQ+G+ R +V D D + E+
Sbjct: 28 LKKLLDNMYDTMLELDGVGLAAPQIGVSKRAAVVDIGD--------DTGRIEL------- 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NPE +++ + T EGC S L +V R V++ D GKP + AEG+ AR
Sbjct: 73 -VNPE--VIEESGEQTGPEGCLSFPDLYGEVKRSDYVKVKAFDRRGKPFTIEAEGFLARA 129
Query: 121 IQHEMDHLDGLLFT 134
+ HE+DHLDG+LFT
Sbjct: 130 LLHEIDHLDGILFT 143
>gi|299533459|ref|ZP_07046840.1| peptide deformylase [Comamonas testosteroni S44]
gi|298718565|gb|EFI59541.1| peptide deformylase [Comamonas testosteroni S44]
Length = 171
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQ+G L++ + +P + + I P V INP + + ++++
Sbjct: 39 GLAAPQIGEDLQMVVFGSGEPNPRYPDAPI-------VPRTVLINPVITPIGEEEQLD-W 90
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLF 133
EGC S+ L+A VPR+ KV+ TG D G P T EG+ AR++QHE DHL G L+
Sbjct: 91 EGCLSVPGLRAMVPRWNKVRYTGFDIYGDPIDRTVEGFHARVVQHECDHLWGKLY 145
>gi|52080175|ref|YP_078966.1| peptide deformylase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319646045|ref|ZP_08000275.1| def protein [Bacillus sp. BT1B_CT2]
gi|404489063|ref|YP_006713169.1| peptide deformylase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52003386|gb|AAU23328.1| polypeptide deformylase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52348054|gb|AAU40688.1| formylmethionine deformylase Def [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317391795|gb|EFV72592.1| def protein [Bacillus sp. BT1B_CT2]
Length = 160
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 18/134 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M + M D GL+APQ+G+ R +V D D + E+
Sbjct: 28 LKKLLDNMYDTMLELDGVGLAAPQIGVSKRAAVVDIGD--------DTGRIEL------- 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NPE +++ + T EGC S L +V R V++ D GKP + AEG+ AR
Sbjct: 73 -VNPE--VIEESGEQTGPEGCLSFPDLYGEVKRSDYVKVKAFDRRGKPFTIEAEGFLARA 129
Query: 121 IQHEMDHLDGLLFT 134
+ HE+DHLDG+LFT
Sbjct: 130 LLHEIDHLDGILFT 143
>gi|3023625|sp|P94601.1|DEF_FREDI RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|1772503|emb|CAA71353.1| polypeptide deformylase [Tolypothrix sp. PCC 7601]
Length = 187
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M D GL+APQVG+ +L ++ +P+ A P +V
Sbjct: 41 LRQLIRDMLQTMYSKDGIGLAAPQVGIHKQLIVIDL-EPDNP------------ANPPLV 87
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP +K + K+ A EGC S+ ++ V R V++ DE G+P + A AR
Sbjct: 88 LINPTIKQVS-KEICVAQEGCLSIPNVYMDVKRPEVVEIAYKDENGRPKTLKATDLLARC 146
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHEMDHL+G++F D +
Sbjct: 147 IQHEMDHLNGVVFVDRV 163
>gi|416054515|ref|ZP_11579207.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
e str. SCC393]
gi|429733356|ref|ZP_19267596.1| peptide deformylase [Aggregatibacter actinomycetemcomitans Y4]
gi|348003501|gb|EGY44094.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
e str. SCC393]
gi|429154958|gb|EKX97663.1| peptide deformylase [Aggregatibacter actinomycetemcomitans Y4]
Length = 181
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 70/136 (51%), Gaps = 17/136 (12%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
II M + M + GL+APQV + R+ + EGD + +V IN
Sbjct: 42 IIDNMFDTMYQEGGIGLAAPQVDILQRIITIDI--------EGDKQN-------QLVLIN 86
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE IL+ + + EGC S+ +A VPR KV + LD GK + A+G A IQH
Sbjct: 87 PE--ILESEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRHGKEFTLKADGLLAICIQH 144
Query: 124 EMDHLDGLLFTDSMLP 139
E+DHL+G+LF D + P
Sbjct: 145 EIDHLNGILFVDYLSP 160
>gi|416068279|ref|ZP_11582714.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
f str. D18P1]
gi|348001177|gb|EGY41931.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
f str. D18P1]
Length = 170
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 70/136 (51%), Gaps = 17/136 (12%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
II M + M + GL+APQV + R+ + EGD + +V IN
Sbjct: 31 IIDNMFDTMYQEGGIGLAAPQVDILQRIITIDI--------EGDKQN-------QLVLIN 75
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE IL+ + + EGC S+ +A VPR KV + LD GK + A+G A IQH
Sbjct: 76 PE--ILESEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRHGKEFTLKADGLLAICIQH 133
Query: 124 EMDHLDGLLFTDSMLP 139
E+DHL+G+LF D + P
Sbjct: 134 EIDHLNGILFVDYLSP 149
>gi|227484652|ref|ZP_03914968.1| peptide deformylase [Anaerococcus lactolyticus ATCC 51172]
gi|227237372|gb|EEI87387.1| peptide deformylase [Anaerococcus lactolyticus ATCC 51172]
Length = 161
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 17/138 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++I++ M M D GL+APQVG R+ +V D E+S +
Sbjct: 28 IRILLDDMAETMYAADGVGLAAPQVGNLRRVIVVDPRDGEDSLVK--------------- 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NPE IL+ + +EGC S+ A V R V++ LDE G+ W A G+ A I
Sbjct: 73 LVNPE--ILEMDGEQIGVEGCLSIPDFNATVKRPEHVKVKYLDENGEEKIWDAHGFPAVI 130
Query: 121 IQHEMDHLDGLLFTDSML 138
+ HE+DHL+G+LF D +
Sbjct: 131 LCHEIDHLNGILFKDKYI 148
>gi|315917642|ref|ZP_07913882.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563]
gi|313691517|gb|EFS28352.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563]
Length = 173
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 15/136 (11%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
I+ M M D GL+APQVG+ LR+F+ PEES +KK IN
Sbjct: 30 ILSNMLETMYATDGVGLAAPQVGISLRMFVCDVGTPEES----QVKKI----------IN 75
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L ++ ++ EGC S+ + KV R K++++ +E G+ EG+ A ++QH
Sbjct: 76 PIITPLT-EENISVEEGCLSVPGIYRKVDRIAKIKISYQNEMGEKIEEILEGFPAIVVQH 134
Query: 124 EMDHLDGLLFTDSMLP 139
E DHL+ LF D + P
Sbjct: 135 EYDHLEATLFVDRISP 150
>gi|73541574|ref|YP_296094.1| peptide deformylase [Ralstonia eutropha JMP134]
gi|72118987|gb|AAZ61250.1| Formylmethionine deformylase [Ralstonia eutropha JMP134]
Length = 177
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M + M + GL+APQ+G+ L++ I F + + + + P V
Sbjct: 28 LRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVIFGF--------DRNPRYPDAPKVPKTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP +++L D EGC S+ L+ VPR+ +++ +G D G AEG+ AR+
Sbjct: 80 LINPMLEMLS-DDLEDGWEGCLSVPGLRGVVPRHTRLRYSGYDLMGGSIDRVAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 139 VQHECDHLQGILY 151
>gi|415770729|ref|ZP_11484998.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D17P-2]
gi|416075605|ref|ZP_11585096.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
b str. SCC1398]
gi|416106943|ref|ZP_11590135.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
c str. SCC2302]
gi|444337067|ref|ZP_21151099.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
b str. SCC4092]
gi|444347192|ref|ZP_21155137.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
c str. AAS4A]
gi|444348294|ref|ZP_21155990.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
b str. S23A]
gi|348005840|gb|EGY46309.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
c str. SCC2302]
gi|348006090|gb|EGY46554.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
b str. SCC1398]
gi|348656635|gb|EGY74244.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D17P-2]
gi|443540760|gb|ELT51287.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
c str. AAS4A]
gi|443547348|gb|ELT56862.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
b str. S23A]
gi|443547679|gb|ELT57131.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
b str. SCC4092]
Length = 181
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 70/136 (51%), Gaps = 17/136 (12%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
II M + M + GL+APQV + R+ + EGD + +V IN
Sbjct: 42 IIDNMFDTMYQEGGIGLAAPQVDILQRIITIDI--------EGDKQN-------QLVLIN 86
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE IL+ + + EGC S+ +A VPR KV + LD GK + A+G A IQH
Sbjct: 87 PE--ILESEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRHGKEFTLKADGLLAICIQH 144
Query: 124 EMDHLDGLLFTDSMLP 139
E+DHL+G+LF D + P
Sbjct: 145 EIDHLNGILFVDYLSP 160
>gi|311068093|ref|YP_003973016.1| peptide deformylase [Bacillus atrophaeus 1942]
gi|419823926|ref|ZP_14347459.1| peptide deformylase [Bacillus atrophaeus C89]
gi|310868610|gb|ADP32085.1| peptide deformylase [Bacillus atrophaeus 1942]
gi|388471963|gb|EIM08753.1| peptide deformylase [Bacillus atrophaeus C89]
Length = 160
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 67/130 (51%), Gaps = 18/130 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M D GL+APQ+G+ R +V EES G I INPE
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVDIG--EES---GRID-----------LINPE-- 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
IL+ K T +EGC S L +V R V++ + GKP + A G+ AR +QHEMDH
Sbjct: 77 ILESGGKQTGIEGCLSFPDLYGEVTRPDYVKVQAYNRQGKPFVFEATGFLARAVQHEMDH 136
Query: 128 LDGLLFTDSM 137
LDG+LFT +
Sbjct: 137 LDGVLFTSKV 146
>gi|148240477|ref|YP_001225864.1| peptide deformylase [Synechococcus sp. WH 7803]
gi|147849016|emb|CAK24567.1| Peptide deformylase [Synechococcus sp. WH 7803]
Length = 201
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 14/120 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ +L ++ DPE + S P +V INPE+ + T
Sbjct: 72 IGLAAPQVGVHQQLLVIDL-DPETASS------------PPLVLINPEITSASASLE-TY 117
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + V R VQ++ DE G+P + A+G AR IQHEMDHL G+LF D +
Sbjct: 118 EEGCLSIPGVYLDVVRPSAVQVSFRDEMGRPRTMKADGLMARCIQHEMDHLTGVLFVDRV 177
>gi|317059168|ref|ZP_07923653.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R]
gi|313684844|gb|EFS21679.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R]
Length = 173
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 15/136 (11%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
I+ M M D GL+APQVG+ LR+F+ PEES +KK IN
Sbjct: 30 ILSNMLETMYATDGVGLAAPQVGISLRMFVCDVGTPEES----QVKKI----------IN 75
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L ++ ++ EGC S+ + KV R K++++ +E G+ EG+ A ++QH
Sbjct: 76 PIITPLT-EENISVEEGCLSVPGIYRKVDRIAKIKISYQNEMGEKIEEILEGFPAIVVQH 134
Query: 124 EMDHLDGLLFTDSMLP 139
E DHL+ LF D + P
Sbjct: 135 EYDHLEATLFVDRVSP 150
>gi|159902617|ref|YP_001549961.1| peptide deformylase [Prochlorococcus marinus str. MIT 9211]
gi|159887793|gb|ABX08007.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
MIT 9211]
Length = 201
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 16/136 (11%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I +M + M GL+APQVG+ +L ++ E P +V
Sbjct: 55 IRTLIKKMLHSMYSAKGIGLAAPQVGIHKQLLVIDL-------------DIENSTTPPIV 101
Query: 61 WINPEMKILDYKDKV-TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
INP+ I D+ + T EGC S+ + V R ++L DE G+P A+G +R
Sbjct: 102 LINPQ--ITDFSAAIETYEEGCLSIPGVYLNVIRPSSIKLNFRDEMGRPKKMNADGLLSR 159
Query: 120 IIQHEMDHLDGLLFTD 135
IQHEMDHL+G+LF D
Sbjct: 160 CIQHEMDHLNGVLFVD 175
>gi|423224737|ref|ZP_17211205.1| peptide deformylase [Bacteroides cellulosilyticus CL02T12C19]
gi|392634693|gb|EIY28608.1| peptide deformylase [Bacteroides cellulosilyticus CL02T12C19]
Length = 184
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M + GL+APQ+GLP+R+ +V E + E K F
Sbjct: 27 LKELIANMFETMDHAEGVGLAAPQIGLPIRVVVVDLDVLSEDYPE--YKNFRK------A 78
Query: 61 WINPEMKILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+INP IL+ ++++ EGC SL + V R ++ +T +DE EG+ AR
Sbjct: 79 YINPH--ILEVSGEEISMEEGCLSLPGIHESVKRGNRIHVTYMDEDMVEHDEVVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHL+G +F D + P
Sbjct: 137 VMQHEFDHLEGKMFIDHLSP 156
>gi|329961281|ref|ZP_08299447.1| peptide deformylase [Bacteroides fluxus YIT 12057]
gi|328531946|gb|EGF58763.1| peptide deformylase [Bacteroides fluxus YIT 12057]
Length = 186
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 70/140 (50%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M + GL+APQ+GLP+R+ V E E K F
Sbjct: 27 LKELIGNMFETMDNAEGVGLAAPQIGLPIRVVTVNLDVLSEDLPE--YKGFRK------A 78
Query: 61 WINPEMKILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+IN ILD ++V+ EGC SL + V R K+ + LDE + EG+ AR
Sbjct: 79 YINAH--ILDVAGEEVSMEEGCLSLPGIHESVKRGDKIHVKYLDENLEEHDEIVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHLDG +F D + P
Sbjct: 137 VMQHEFDHLDGKMFIDHLSP 156
>gi|381170278|ref|ZP_09879437.1| peptide deformylase [Xanthomonas citri pv. mangiferaeindicae LMG
941]
gi|390992891|ref|ZP_10263102.1| peptide deformylase [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|418516787|ref|ZP_13082958.1| peptide deformylase [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|372552363|emb|CCF70077.1| peptide deformylase [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|380689346|emb|CCG35924.1| peptide deformylase [Xanthomonas citri pv. mangiferaeindicae LMG
941]
gi|410706576|gb|EKQ65035.1| peptide deformylase [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 171
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 11/150 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ M M GL+APQ+ + L+L + F D E + E A P
Sbjct: 28 LHTLVADMFETMDAARGVGLAAPQIAVDLQLMVFGF-DASERYPEA-------PAVPRTA 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
N +++ L +D EGC S+ L+A +PRYR ++ G G P AEG+ AR+
Sbjct: 80 LANAQIEPLS-EDMENGWEGCLSIPGLRAVIPRYRFIRYRGFAPDGSPIERDAEGFHARV 138
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDI 150
+QHE DHL G L+ + ++ + ++D+
Sbjct: 139 VQHEYDHLVGRLYPSRI--ENFDTFGFEDV 166
>gi|374289455|ref|YP_005036540.1| peptide deformylase [Bacteriovorax marinus SJ]
gi|301167996|emb|CBW27582.1| peptide deformylase [Bacteriovorax marinus SJ]
Length = 179
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 82/146 (56%), Gaps = 10/146 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I +++ MK G++APQ+G+ ++ I+ PD E + DI K + + +N
Sbjct: 34 LIKDLEDTMKENGGIGIAAPQIGVSYQVAIIQLPDNSERYP--DIAKSD-----QYIVVN 86
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P +++LD ++ EGC S+ L+ V R RKV++T L++ + + EG+ A + QH
Sbjct: 87 PTIEVLDQTEQ-GFWEGCLSVPGLRGFVHRPRKVKITFLNDRAQQEELILEGFLATVFQH 145
Query: 124 EMDHLDGLLFTDSMLPKSLECVCWQD 149
E+DHL G L+ D + K L + +++
Sbjct: 146 ELDHLFGKLYIDRI--KDLTLLSYEE 169
>gi|409358409|ref|ZP_11236772.1| peptide deformylase [Dietzia alimentaria 72]
Length = 184
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 21/137 (15%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
I+ + + + D GL+APQVGL R+F+ EG + +N
Sbjct: 31 IVTDLMDTVSHEDGAGLAAPQVGLSTRVFVYTC-----GGREGHL-------------VN 72
Query: 64 PE-MKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
PE I D K +V+ EGC S+ + V R+ +V G+D G+P + AEG AR +Q
Sbjct: 73 PEWAPIGDEKTQVS--EGCLSIPGVSVPVERFARVTARGVDLHGRPVRFEAEGILARAVQ 130
Query: 123 HEMDHLDGLLFTDSMLP 139
HE DHLDG+LF + P
Sbjct: 131 HETDHLDGVLFLQRLTP 147
>gi|261866825|ref|YP_003254747.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1]
gi|365966643|ref|YP_004948205.1| peptide deformylase [Aggregatibacter actinomycetemcomitans ANH9381]
gi|387121463|ref|YP_006287346.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1]
gi|415756702|ref|ZP_11481142.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D17P-3]
gi|416035791|ref|ZP_11573561.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
a str. H5P1]
gi|416049154|ref|ZP_11576473.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
d str. I63B]
gi|261412157|gb|ACX81528.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1]
gi|347991970|gb|EGY33408.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
d str. I63B]
gi|347997199|gb|EGY38223.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
a str. H5P1]
gi|348655724|gb|EGY71164.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D17P-3]
gi|365745556|gb|AEW76461.1| peptide deformylase [Aggregatibacter actinomycetemcomitans ANH9381]
gi|385875955|gb|AFI87514.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 170
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 70/136 (51%), Gaps = 17/136 (12%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
II M + M + GL+APQV + R+ + EGD + +V IN
Sbjct: 31 IIDNMFDTMYQEGGIGLAAPQVDILQRIITIDI--------EGDKQN-------QLVLIN 75
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE IL+ + + EGC S+ +A VPR KV + LD GK + A+G A IQH
Sbjct: 76 PE--ILESEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRHGKEFTLKADGLLAICIQH 133
Query: 124 EMDHLDGLLFTDSMLP 139
E+DHL+G+LF D + P
Sbjct: 134 EIDHLNGILFVDYLSP 149
>gi|228470000|ref|ZP_04054916.1| peptide deformylase [Porphyromonas uenonis 60-3]
gi|228308381|gb|EEK17219.1| peptide deformylase [Porphyromonas uenonis 60-3]
Length = 188
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M D GL+APQ+G +RL ++ E+ + E K +V IN
Sbjct: 32 LIADMWQTMYESDGIGLAAPQIGRNIRLQVIDATPLEDEYPECATLK--------LVMIN 83
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
M+ L +D + EGC SL + +V R + + + ++E +P G+AAR++QH
Sbjct: 84 AHMQSLS-EDTCSEAEGCLSLPGINERVVRPKSIVVDYMNEQFEPQRLELSGYAARVVQH 142
Query: 124 EMDHLDGLLFTDSM 137
E DHLDG LF D +
Sbjct: 143 EYDHLDGKLFVDHI 156
>gi|119713702|gb|ABL97752.1| peptide deformylase [uncultured marine bacterium EB0_41B09]
Length = 163
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M MK GL+APQVG ++L I D E + E + P V IN
Sbjct: 24 LIKDMIKTMKDAQGAGLAAPQVGESIQLVIFGV-DKNERYPEA-------EEVPFTVLIN 75
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L+ ++K EGC S+ ++ VPRY+ + G D+ G EG+ AR++QH
Sbjct: 76 PVITPLN-QEKEDDWEGCLSVPGMRGVVPRYKTINYKGFDQYGNEIDRDVEGFHARVVQH 134
Query: 124 EMDHLDGLLF 133
E DHL G+L+
Sbjct: 135 ECDHLFGILY 144
>gi|419842272|ref|ZP_14365623.1| peptide deformylase [Fusobacterium necrophorum subsp. funduliforme
ATCC 51357]
gi|386902590|gb|EIJ67428.1| peptide deformylase [Fusobacterium necrophorum subsp. funduliforme
ATCC 51357]
Length = 173
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 15/136 (11%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
I+ M M D GL+APQVG+ LR+F+ PEES ++KK IN
Sbjct: 30 ILRNMVETMYARDGVGLAAPQVGISLRMFVCDIGSPEES----NVKKI----------IN 75
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L ++ ++ EGC S+ + KV R K++L +E G+ EG+ A ++QH
Sbjct: 76 PLITPLT-EETISVEEGCLSIPGIYKKVERIAKLKLEYQNEQGEFVEEILEGFPAIVVQH 134
Query: 124 EMDHLDGLLFTDSMLP 139
E DHL+ LF D + P
Sbjct: 135 EYDHLEATLFVDRVSP 150
>gi|418464033|ref|ZP_13034975.1| peptide deformylase [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359757374|gb|EHK91528.1| peptide deformylase [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 170
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 70/136 (51%), Gaps = 17/136 (12%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
II M + M + GL+APQV + R+ + EGD + +V IN
Sbjct: 31 IIDNMFDTMYQEGGIGLAAPQVDILQRIITIDI--------EGDKQN-------QLVLIN 75
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE IL+ + + EGC S+ +A VPR KV + LD GK + A+G A IQH
Sbjct: 76 PE--ILESEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRHGKEFTLKADGLLAICIQH 133
Query: 124 EMDHLDGLLFTDSMLP 139
E+DHL+G+LF D + P
Sbjct: 134 EIDHLNGILFVDYLSP 149
>gi|336324720|ref|YP_004604686.1| peptide deformylase [Corynebacterium resistens DSM 45100]
gi|336100702|gb|AEI08522.1| peptide deformylase [Corynebacterium resistens DSM 45100]
Length = 222
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEG-DIKKFEMQAFP--HMV 60
+I M M R GL+A QVG+ LRLF+ PD E + E ++ E P
Sbjct: 36 LINDMYETMDRAHGVGLAANQVGVDLRLFVYHCPDIEGADGERLTEEQIEANGGPMRRGC 95
Query: 61 WINPEMKILDYK----DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
INP ++ D D+ EGC S+ R ++TGLDE G+P + G+
Sbjct: 96 VINPTLETSDIPETMPDEEIDEEGCLSVPGYSFPTGRADWARVTGLDENGQPITVEGYGF 155
Query: 117 AARIIQHEMDHLDGLLFTDSMLPKS 141
AR +QHE+ HLDG L+TD ++ ++
Sbjct: 156 FARCLQHEVGHLDGFLYTDVLIGRN 180
>gi|340755493|ref|ZP_08692177.1| peptide deformylase [Fusobacterium sp. D12]
gi|421500784|ref|ZP_15947775.1| peptide deformylase [Fusobacterium necrophorum subsp. funduliforme
Fnf 1007]
gi|313687280|gb|EFS24115.1| peptide deformylase [Fusobacterium sp. D12]
gi|402267139|gb|EJU16537.1| peptide deformylase [Fusobacterium necrophorum subsp. funduliforme
Fnf 1007]
Length = 173
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 15/136 (11%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
I+ M M D GL+APQVG+ LR+F+ PEES ++KK IN
Sbjct: 30 ILRNMVETMYARDGVGLAAPQVGISLRMFVCDIGTPEES----NVKKI----------IN 75
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L ++ ++ EGC S+ + KV R K++L +E G+ EG+ A ++QH
Sbjct: 76 PLITPLT-EETISVEEGCLSIPGIYKKVERIAKLKLEYQNEQGEFVEEILEGFPAIVVQH 134
Query: 124 EMDHLDGLLFTDSMLP 139
E DHL+ LF D + P
Sbjct: 135 EYDHLEATLFVDRVSP 150
>gi|115352107|ref|YP_773946.1| peptide deformylase [Burkholderia ambifaria AMMD]
gi|115282095|gb|ABI87612.1| peptide deformylase [Burkholderia ambifaria AMMD]
Length = 177
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
I+ M M + GL+APQ+G+ L+L I F G ++ + P V I
Sbjct: 31 IVADMFETMHHANGAGLAAPQIGIGLQLIIFGF---------GSNNRYPDAPPVPETVLI 81
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP+++ + D EGC S+ ++ V RY KV+ +G D+ G AEG+ AR++Q
Sbjct: 82 NPKLEYMP-PDMEEGWEGCLSVPGMRGVVSRYAKVRYSGYDQFGAKIDRVAEGFHARVVQ 140
Query: 123 HEMDHLDGLLF 133
HE DHL G L+
Sbjct: 141 HEYDHLIGKLY 151
>gi|189467964|ref|ZP_03016749.1| hypothetical protein BACINT_04358 [Bacteroides intestinalis DSM
17393]
gi|189436228|gb|EDV05213.1| peptide deformylase [Bacteroides intestinalis DSM 17393]
Length = 186
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF--EMQAFPHMVW 61
+I M ++ D GL+APQ+ LP++LFIV D S + + F E +
Sbjct: 30 VIETMWQTLRDADGCGLAAPQINLPIKLFIVNSKDTYTYMSAKEREHFFVEEDCGIEETF 89
Query: 62 INPEMKILDYKDKV-TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
IN KI+ Y +KV TA EGC S+ L +V R V + D K + T G+ ARI
Sbjct: 90 INA--KIIAYSEKVWTAGEGCLSIPDLYEEVTRPWSVTIRYQDNEFKEQNRTYYGYTARI 147
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE +H G L+ D + P
Sbjct: 148 IQHEFEHTQGKLYIDRLSP 166
>gi|159463808|ref|XP_001690134.1| predicted protein [Chlamydomonas reinhardtii]
gi|158284122|gb|EDP09872.1| predicted protein [Chlamydomonas reinhardtii]
Length = 250
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 70/143 (48%), Gaps = 15/143 (10%)
Query: 16 DLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
D GL+APQVG+ +RL + +P G+ + +NPE+ + K
Sbjct: 97 DGVGLAAPQVGVNVRLMVF---NPMGRDKPGN----------ESILVNPEI-VEQLGGKE 142
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWT-AEGWAARIIQHEMDHLDGLLFT 134
EGC S + V R R++ + LD TG+P T + W ARI QHE DHL G+LF
Sbjct: 143 LGEEGCLSFPRIYGDVERSRQINVKALDATGQPVKLTLTDPWVARIFQHEFDHLQGVLFH 202
Query: 135 DSMLPKSLECVCWQDINLQNGLL 157
D M P LE V + + L+ L
Sbjct: 203 DRMKPSVLETVRPELVALEEAFL 225
>gi|89890524|ref|ZP_01202034.1| N-formylmethionyl-tRNA deformylase [Flavobacteria bacterium BBFL7]
gi|89517439|gb|EAS20096.1| N-formylmethionyl-tRNA deformylase [Flavobacteria bacterium BBFL7]
Length = 196
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 78/153 (50%), Gaps = 18/153 (11%)
Query: 19 GLSAPQVGLPLRLFIV---AFPD-----PEESFSEGDIKKFEMQAFPHMVWINPEMKILD 70
GL+APQVG+P+R+F+V F D PEE G KK + A H+V N E +
Sbjct: 45 GLAAPQVGMPIRIFLVDTSPFGDDPELTPEEQKELGSFKKAFINA--HIVEENGEEWAFN 102
Query: 71 YKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDG 130
EGC S+ +++ V R +V + DE K + T G AR+IQHE DH++G
Sbjct: 103 --------EGCLSIPNVREDVFRPEEVTIRYCDENFKEVTETYTGLMARVIQHEYDHIEG 154
Query: 131 LLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
+LFTD + + + N+ G + + Y M
Sbjct: 155 ILFTDKISSLKKRLIKGKLANISKGKVSIDYRM 187
>gi|327398717|ref|YP_004339586.1| peptide deformylase [Hippea maritima DSM 10411]
gi|327181346|gb|AEA33527.1| Peptide deformylase [Hippea maritima DSM 10411]
Length = 168
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 11/125 (8%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
G++APQ+G +R+ V D ++ KK + ++ INPE ILD+ +
Sbjct: 47 GIAAPQIGELVRIIAV---DASKN------KKGQKINHGELIMINPE--ILDWSSIIKTR 95
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
EGC S+ V R RK+ + D GK + EG+ A +IQHE+DHLDG+LF D ++
Sbjct: 96 EGCLSVPDYTGNVNRARKITVKYWDLDGKEHQFDTEGFEAVVIQHEIDHLDGILFIDRII 155
Query: 139 PKSLE 143
K +
Sbjct: 156 SKRTD 160
>gi|345011155|ref|YP_004813509.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
gi|344037504|gb|AEM83229.1| Peptide deformylase [Streptomyces violaceusniger Tu 4113]
Length = 185
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++I M M GL+A Q+G+ LR+F+ PD E+ G +
Sbjct: 38 LALLIEDMYATMYAAHGVGLAANQIGVGLRVFVFDCPDDEDHRHLGHV------------ 85
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + D + V EGC SL ++A RY + + G+ TG+P G+ AR
Sbjct: 86 -VNPRLAAADGVN-VHGPEGCLSLPGIEAGTSRYDRAVIEGVTMTGEPVRIEGTGFFARC 143
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHE DHLDG LF D +
Sbjct: 144 LQHECDHLDGGLFLDRL 160
>gi|302844969|ref|XP_002954024.1| hypothetical protein VOLCADRAFT_45493 [Volvox carteri f.
nagariensis]
gi|300260836|gb|EFJ45053.1| hypothetical protein VOLCADRAFT_45493 [Volvox carteri f.
nagariensis]
Length = 177
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 15/140 (10%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
+M VM + D GL+APQVG+ +RL + +P G+ + +NPE+
Sbjct: 41 EMIEVMYQDDGVGLAAPQVGVNIRLMVF---NPAGRDRPGN----------ESILVNPEI 87
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWT-AEGWAARIIQHEM 125
+ K EGC S + V R R++ + LD G+P + W ARI QHE
Sbjct: 88 -VEQLGGKELGEEGCLSFPRIYGDVERSRQITVKALDANGQPVRLQLTDPWVARIFQHEY 146
Query: 126 DHLDGLLFTDSMLPKSLECV 145
DHL G+LF D M P LE V
Sbjct: 147 DHLQGVLFHDRMKPSVLEAV 166
>gi|224060121|ref|XP_002300047.1| peptide deformylase [Populus trichocarpa]
gi|222847305|gb|EEE84852.1| peptide deformylase [Populus trichocarpa]
Length = 258
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ +M +VM + D GLSAPQVG+ ++L + +P + EGD +V
Sbjct: 91 LKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVF---NPADEHGEGD----------EIV 137
Query: 61 WINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+NP ++ Y K EGC S + A V R V++ D G + G AR
Sbjct: 138 LVNP--RVNKYSKKTVLFNEGCLSFPGIYADVKRPESVKIDARDINGARFTVNLSGLPAR 195
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECV 145
+ QHE DHL G+LF D M + L+ +
Sbjct: 196 VFQHEFDHLQGILFFDRMTEEVLDSI 221
>gi|110799951|ref|YP_696430.1| peptide deformylase [Clostridium perfringens ATCC 13124]
gi|168210623|ref|ZP_02636248.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
gi|168214221|ref|ZP_02639846.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
gi|168217031|ref|ZP_02642656.1| polypeptide deformylase [Clostridium perfringens NCTC 8239]
gi|169342685|ref|ZP_02863726.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
gi|110674598|gb|ABG83585.1| peptide deformylase [Clostridium perfringens ATCC 13124]
gi|169299191|gb|EDS81261.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
gi|170711284|gb|EDT23466.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
gi|170714299|gb|EDT26481.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
gi|182380902|gb|EDT78381.1| polypeptide deformylase [Clostridium perfringens NCTC 8239]
Length = 147
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K+++ M M + GL+APQVG+ R+F+V D S V
Sbjct: 28 IKVLVEDMIETMYENNGVGLAAPQVGILKRIFVVDAMDGAGS----------------RV 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INPE IL+ + T EGC SL V R K+++ LD G AE + AR
Sbjct: 72 FINPE--ILEKSGEQTDEEGCLSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFLARA 129
Query: 121 IQHEMDHLDGLLFTDSML 138
IQHE DHL+G+LF D L
Sbjct: 130 IQHEYDHLEGVLFIDHEL 147
>gi|126662042|ref|ZP_01733041.1| peptide deformylase [Flavobacteria bacterium BAL38]
gi|126625421|gb|EAZ96110.1| peptide deformylase [Flavobacteria bacterium BAL38]
Length = 195
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFE---MQAFP 57
+K I+ M M GL+APQVGLP+RLFIV D E D+ K E M+ F
Sbjct: 27 LKETIVNMYETMYHAHGVGLAAPQVGLPIRLFIV---DTEPFSDSDDVSKEEAALMKDFK 83
Query: 58 HMVWINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
+IN KI+ + V EGC S+ ++ V R+ + + DE + +G
Sbjct: 84 K-TFIN--AKIIKEEGDVWGFNEGCLSIPDVREDVFRHDTITIEYFDEDFNKKTEVYDGL 140
Query: 117 AARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
AR+IQHE DH++G+LFTD + + V + N+ +G Y M
Sbjct: 141 IARVIQHEYDHIEGILFTDHISSLKKKLVAKKLQNIMDGKARPDYKM 187
>gi|408369919|ref|ZP_11167699.1| peptide deformylase [Galbibacter sp. ck-I2-15]
gi|407744973|gb|EKF56540.1| peptide deformylase [Galbibacter sp. ck-I2-15]
Length = 193
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M MK + GL++PQ+GLP+RLF+V E+ E D K + Q ++
Sbjct: 30 LIADMWETMKNANGCGLASPQIGLPIRLFVVDSKTTFENLEEADRKIYFAQDDKGIMETF 89
Query: 64 PEMKILDYKDKV-TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
KI++ ++ EGC S+ +L K+ R+ + + ++ +P + T G AR+IQ
Sbjct: 90 INAKIIERSVELWEDEEGCLSIPNLSQKITRHWTITIEYCNKDFEPQTKTFSGTTARMIQ 149
Query: 123 HEMDHLDGLLFTDSMLP 139
HE DH +G+L+ D + P
Sbjct: 150 HEYDHTEGILYLDYLKP 166
>gi|422322683|ref|ZP_16403723.1| peptide deformylase 1 [Achromobacter xylosoxidans C54]
gi|317402414|gb|EFV82986.1| peptide deformylase 1 [Achromobacter xylosoxidans C54]
Length = 177
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M M GL+APQ+G+ L+L I F D E + + A P +
Sbjct: 28 LHALIEDMFETMAAAQGVGLAAPQIGVDLQLVIFGF-DRNERYPDA-------PAVPQTI 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP + L D EGC S+ L+ VPRYR ++ G D G+ AEG+ AR+
Sbjct: 80 LCNPVITPLS-DDMEDGWEGCLSVPGLRGLVPRYRHIRYQGKDPYGRDIDREAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHECDHLIGRLY 151
>gi|365864644|ref|ZP_09404324.1| putative polypeptide deformylase [Streptomyces sp. W007]
gi|364005907|gb|EHM26967.1| putative polypeptide deformylase [Streptomyces sp. W007]
Length = 166
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 14/119 (11%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+A QVG+PL++F+ PD ++ G + +NPE+ D V
Sbjct: 41 GLAANQVGVPLKVFVYDCPDDDDVRHLGHV-------------VNPELVEADGL-TVRGP 86
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC SL L+A R+ + GL TG+P GW AR +QHE DHL+G ++TD +
Sbjct: 87 EGCLSLPGLEAGTDRFDHAVVEGLTMTGEPVRIAGTGWFARCLQHECDHLEGTVYTDRL 145
>gi|410094310|ref|ZP_11290751.1| peptide deformylase [Pseudomonas viridiflava UASWS0038]
gi|409758251|gb|EKN43575.1| peptide deformylase [Pseudomonas viridiflava UASWS0038]
Length = 179
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M+ GL+APQ+G+ L+L I F E + + +A P +
Sbjct: 30 LKTLIADMFETMESVGGVGLAAPQIGVDLQLVIFGFERSE--------RYPQAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L Y EGC S+ L+ V R++ ++ G D G+P A G+ AR+
Sbjct: 82 LINPVITPL-YPAVEEGWEGCLSVPGLRGMVNRFQSIRYEGFDPDGQPIQRDAFGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|423096891|ref|ZP_17084687.1| peptide deformylase [Pseudomonas fluorescens Q2-87]
gi|397885179|gb|EJL01662.1| peptide deformylase [Pseudomonas fluorescens Q2-87]
Length = 179
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY+ ++ G D G+P TA G+ AR++QH
Sbjct: 85 PLITPLSPLME-EGFEGCLSVPGLRGAVERYQHIRYEGFDPKGEPIVRTASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|386359525|ref|YP_006057770.1| peptide deformylase [Thermus thermophilus JL-18]
gi|383508552|gb|AFH37984.1| peptide deformylase [Thermus thermophilus JL-18]
Length = 192
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 72/125 (57%), Gaps = 10/125 (8%)
Query: 19 GLSAPQVGLPLRLFI-VAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV-T 76
GL+APQ+GL RLF+ V + D E E +++ + + V NP ++ Y++ +
Sbjct: 44 GLAAPQIGLSQRLFVAVEYADEPEGEEEKPLRELVRRVY---VVANP---VITYREGLLE 97
Query: 77 ALEGCASLKSLQAK-VPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC SL L ++ VPR ++++ DE G EG+ AR+ QHE+DHLDG+LF +
Sbjct: 98 GTEGCLSLPGLYSEEVPRAERIRVEYQDEEGHKRVLELEGYMARVFQHEIDHLDGILFFE 157
Query: 136 SMLPK 140
LPK
Sbjct: 158 R-LPK 161
>gi|434385409|ref|YP_007096020.1| peptide deformylase [Chamaesiphon minutus PCC 6605]
gi|428016399|gb|AFY92493.1| peptide deformylase [Chamaesiphon minutus PCC 6605]
Length = 190
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ II+ M M D GL+APQVG+ +L ++ + ++ K E P ++
Sbjct: 41 IRRIIVAMLQTMYSADGIGLAAPQVGIHKQLIVI----------DCELDKPEA---PPLI 87
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP +K K EGC S+ + V R ++L DE+G+P + A+G AR
Sbjct: 88 LINPTIKKYG-KALAKDQEGCLSIPGVYLDVQRPETLELAYRDESGRPRTLKADGLLARA 146
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHEMDHL+G+LF D +
Sbjct: 147 IQHEMDHLNGVLFVDRV 163
>gi|54294000|ref|YP_126415.1| hypothetical protein lpl1061 [Legionella pneumophila str. Lens]
gi|397666738|ref|YP_006508275.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Legionella
pneumophila subsp. pneumophila]
gi|53753832|emb|CAH15298.1| hypothetical protein lpl1061 [Legionella pneumophila str. Lens]
gi|307609830|emb|CBW99347.1| hypothetical protein LPW_11251 [Legionella pneumophila 130b]
gi|395130149|emb|CCD08385.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Legionella
pneumophila subsp. pneumophila]
Length = 172
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M +M G++APQ+G+ R+ + + E I P
Sbjct: 29 LKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFGTDYTKRRKPEYPI--------PDTA 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++IL ++ T EGC + L +VPR +++ +G D G + A G ARI
Sbjct: 81 LINPSLRILS-QEIQTGYEGCLNCGELMGEVPRAMEIEYSGFDIDGNRITKKASGLEARI 139
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHE+DHLDG LF D +
Sbjct: 140 LQHEIDHLDGFLFLDRV 156
>gi|299143971|ref|ZP_07037051.1| peptide deformylase [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518456|gb|EFI42195.1| peptide deformylase [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 158
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 19/135 (14%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M + + GL+APQVG+ LR I E F+
Sbjct: 28 LKTLIEDMYETMDKAEGVGLAAPQVGV-LRRVITVDDRTEHRFA---------------- 70
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE+ I + ++ EGC SL + Q KV R+ ++++ LDE G+ A+ + ARI
Sbjct: 71 LINPEI-IFESGTQL-GYEGCLSLPNKQGKVKRFNEIKVKYLDENGEKKEIEAKEYLARI 128
Query: 121 IQHEMDHLDGLLFTD 135
+QHE+DHL+G+L++D
Sbjct: 129 LQHEIDHLNGILYSD 143
>gi|82701784|ref|YP_411350.1| peptide deformylase [Nitrosospira multiformis ATCC 25196]
gi|82409849|gb|ABB73958.1| Peptide deformylase [Nitrosospira multiformis ATCC 25196]
Length = 177
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 73/137 (53%), Gaps = 23/137 (16%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVA------FPDPEESFSEGDIKKFEMQAFP 57
++ M + M+ + GL+APQ+G+ L++ I +PD EE P
Sbjct: 32 LLRDMHDTMEALEGAGLAAPQIGIDLQVVIFGVKRNLRYPDAEE--------------VP 77
Query: 58 HMVWINPEMKIL-DYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
+ V +NP + L +Y ++ EGC S+ ++ VPRY +++ G D+ G T EG+
Sbjct: 78 YTVLVNPVLTPLTEYMEQ--DWEGCLSVPGMRGMVPRYARIRYEGSDQYGNRIDRTVEGF 135
Query: 117 AARIIQHEMDHLDGLLF 133
AR++QHE DHL G+L+
Sbjct: 136 HARVVQHECDHLQGILY 152
>gi|342903781|ref|ZP_08725586.1| Peptide deformylase [Haemophilus haemolyticus M21621]
gi|341954451|gb|EGT80931.1| Peptide deformylase [Haemophilus haemolyticus M21621]
Length = 169
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ II M + M + + GL+APQV + R+ + EGD + +V
Sbjct: 28 IRKIIDDMFDTMYQEEGIGLAAPQVDILQRIITIDV--------EGDKQN-------QLV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE IL + + EGC S+ +A VPR KV++ LD GK + A+G A
Sbjct: 73 LINPE--ILASEGETGIEEGCLSIPGFRALVPRKEKVKVRALDRDGKEFTLDADGLLAIC 130
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHL+G+LF D + P
Sbjct: 131 IQHEIDHLNGVLFVDYLSP 149
>gi|384430263|ref|YP_005639623.1| Peptide deformylase [Thermus thermophilus SG0.5JP17-16]
gi|333965731|gb|AEG32496.1| Peptide deformylase [Thermus thermophilus SG0.5JP17-16]
Length = 192
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 72/125 (57%), Gaps = 10/125 (8%)
Query: 19 GLSAPQVGLPLRLFI-VAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV-T 76
GL+APQ+GL RLF+ V + D E E +++ + + V NP ++ Y++ +
Sbjct: 44 GLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVRRVY---VVANP---VITYREGLLE 97
Query: 77 ALEGCASLKSLQAK-VPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC SL L ++ VPR ++++ DE G EG+ AR+ QHE+DHLDG+LF +
Sbjct: 98 GTEGCLSLPGLYSEEVPRAERIRVEYQDEEGHKRVLELEGYMARVFQHEIDHLDGILFFE 157
Query: 136 SMLPK 140
LPK
Sbjct: 158 R-LPK 161
>gi|406974886|gb|EKD97829.1| hypothetical protein ACD_23C00722G0001 [uncultured bacterium]
Length = 144
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M+ + GL+APQ+G+ L++ I + + + + P V +NP +
Sbjct: 1 MLDTMRSVNGAGLAAPQIGVDLQVVIFGS-------THANPRYPDRPLVPPTVLLNPVIT 53
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
+ K+ EGC S+ L+ KVPR+ +++ TG D G P T EG+ AR++QHE DH
Sbjct: 54 PVGAKED-EDWEGCLSVPGLRGKVPRWSRIRYTGFDPYGDPIDRTVEGFHARVVQHECDH 112
Query: 128 LDGLLF 133
L G L+
Sbjct: 113 LIGKLY 118
>gi|359689814|ref|ZP_09259815.1| peptide deformylase [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418748082|ref|ZP_13304374.1| peptide deformylase [Leptospira licerasiae str. MMD4847]
gi|418757559|ref|ZP_13313746.1| peptide deformylase [Leptospira licerasiae serovar Varillal str.
VAR 010]
gi|384115336|gb|EIE01594.1| peptide deformylase [Leptospira licerasiae serovar Varillal str.
VAR 010]
gi|404275151|gb|EJZ42465.1| peptide deformylase [Leptospira licerasiae str. MMD4847]
Length = 176
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 13/137 (9%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVW 61
K +I M + M+ D GL+APQ+G+ ++ +V DPE+ P +
Sbjct: 32 KKLIRDMFDTMRHADGVGLAAPQIGI-MKKIVVVGSDPEDDSP---------SRVPERIL 81
Query: 62 INPEMK-ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE+K + D D EGC S+ ++ V R K+Q+ +DE G EG++A +
Sbjct: 82 INPEIKPVTDSLD--GNWEGCLSVPGMRGYVERPNKIQMKWMDEKGSIHDEIIEGYSAIV 139
Query: 121 IQHEMDHLDGLLFTDSM 137
QHE DHL+G+L+ D +
Sbjct: 140 YQHECDHLNGVLYVDRL 156
>gi|172058021|ref|YP_001814481.1| peptide deformylase [Exiguobacterium sibiricum 255-15]
gi|171990542|gb|ACB61464.1| peptide deformylase [Exiguobacterium sibiricum 255-15]
Length = 179
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 23/141 (16%)
Query: 7 QMKNVMKRFDL---FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
Q + +++DL GL+APQ+G+ R+F + D + DI +F + N
Sbjct: 45 QDDELAEKYDLRSGIGLAAPQIGVNKRMFAIRLQDGD------DILEFGI--------YN 90
Query: 64 PEMKILDYKDKVTAL---EGCASL-KSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
P KI+ + + T L EGC S+ + ++ VPRY ++ L+G+D G P +G A
Sbjct: 91 P--KIVSHSVEQTYLAGGEGCLSVDREVEGHVPRYMRITLSGIDHNGNPVKLRLKGLKAV 148
Query: 120 IIQHEMDHLDGLLFTDSMLPK 140
+ QHE DHLDG++F D + PK
Sbjct: 149 VCQHEYDHLDGIMFYDRIDPK 169
>gi|430808710|ref|ZP_19435825.1| peptide deformylase [Cupriavidus sp. HMR-1]
gi|429498885|gb|EKZ97371.1| peptide deformylase [Cupriavidus sp. HMR-1]
Length = 177
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++++I M + M+ + GL+APQ+G+ L++ I F + + + + P V
Sbjct: 28 LRLLIDDMFDTMEHANGAGLAAPQIGVDLQVVIFGF--------DRNPRYPDAPTVPKTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ L + EGC S+ L+ VPRY +++ TG D G AE + AR+
Sbjct: 80 LINPSLEPLS-DEMEDGWEGCLSVPGLRGVVPRYTRLKYTGFDMMGNRIERVAEDFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 139 VQHECDHLIGVLY 151
>gi|418520812|ref|ZP_13086859.1| peptide deformylase [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410703235|gb|EKQ61729.1| peptide deformylase [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
Length = 171
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 11/150 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ M M GL+APQ+ + L+L + F D E + E A P
Sbjct: 28 LHTLVADMFETMDAARGVGLAAPQIAVDLQLMVFGF-DASERYPEA-------PATPRTA 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
N +++ L +D EGC S+ L+A +PRYR ++ G G P AEG+ AR+
Sbjct: 80 LANAQIEPLS-EDMENGWEGCLSIPGLRAVIPRYRFIRYRGFAPDGSPIERDAEGFHARV 138
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDI 150
+QHE DHL G L+ + ++ + ++D+
Sbjct: 139 VQHEYDHLVGRLYPSRI--ENFDTFGFEDV 166
>gi|398892402|ref|ZP_10645538.1| peptide deformylase [Pseudomonas sp. GM55]
gi|398185552|gb|EJM72951.1| peptide deformylase [Pseudomonas sp. GM55]
Length = 179
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G+D G+P A G+ AR++QH
Sbjct: 85 PLITPLSPTLE-EGFEGCLSVPGLRGAVQRYQRIRYEGVDPKGEPIVRIASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|220906351|ref|YP_002481662.1| peptide deformylase [Cyanothece sp. PCC 7425]
gi|219862962|gb|ACL43301.1| peptide deformylase [Cyanothece sp. PCC 7425]
Length = 190
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 77/141 (54%), Gaps = 14/141 (9%)
Query: 11 VMKRFDLFGLSAPQVGLPLRLFIVAF-PDPEESFSEGDIKKFEMQAFPHMVWINPEMKIL 69
+K+ + GL+APQVG ++FIVA P+P + EM+ INP ++L
Sbjct: 51 TVKQANGVGLAAPQVGASWQIFIVASRPNPRYPHAP------EMEP---TAMINP--RLL 99
Query: 70 DYKDK-VTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHL 128
+ D+ V EGC S+ L+ VPRY+ +++ LD GK + ARI QHE DHL
Sbjct: 100 AHNDQQVKDWEGCLSIPGLRGLVPRYQGIEVEYLDRRGKTRRQQLHDFVARIFQHEQDHL 159
Query: 129 DGLLFTDSMLPKSLECVCWQD 149
+G++F D L +LE V Q+
Sbjct: 160 NGVVFLDR-LETTLELVTEQE 179
>gi|167586850|ref|ZP_02379238.1| peptide deformylase [Burkholderia ubonensis Bu]
Length = 176
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 11/131 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
++ M M + GL+APQ+G+ L++ I F G+ ++ E P V I
Sbjct: 31 LVADMFETMHHANGAGLAAPQIGVGLQVIIFGF---------GNNNRYPEAPPVPETVLI 81
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP+++ + D EGC S+ ++ V RY K++ +G D+ G AEG+ AR++Q
Sbjct: 82 NPKVEFMP-PDMEEGWEGCLSVPGMRGVVSRYAKIRYSGFDQFGAKIDRVAEGFHARVVQ 140
Query: 123 HEMDHLDGLLF 133
HE DHL G L+
Sbjct: 141 HEYDHLIGKLY 151
>gi|297182651|gb|ADI18809.1| N-formylmethionyl-tRNA deformylase [uncultured SAR11 cluster
bacterium HF4000_37C10]
Length = 185
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+A QVG+P R+ ++ ++S S D K+ E + M ++NPE+ I +
Sbjct: 45 IGLAAIQVGVPKRVIVLDIRWRDKSESTSDEKQVERKN--PMCFVNPEI-IAKSTNNSIY 101
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD-- 135
EGC S+ A++ R K + LD G+P + AEG A IQHE+DHL+G+LF D
Sbjct: 102 EEGCLSVPGQFAEIARSDKCHVKYLDYYGQPKEFVAEGMLATCIQHEIDHLEGILFIDYL 161
Query: 136 SMLPKSL 142
S L KS+
Sbjct: 162 SKLKKSM 168
>gi|218295865|ref|ZP_03496645.1| peptide deformylase [Thermus aquaticus Y51MC23]
gi|218243603|gb|EED10131.1| peptide deformylase [Thermus aquaticus Y51MC23]
Length = 190
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 72/124 (58%), Gaps = 9/124 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDK-VTA 77
GL+APQ+GL RLF+ E E ++ Q + V +NP ++ +++ V
Sbjct: 44 GLAAPQIGLSQRLFVAVEYADEPDEEERPLRDLVRQVY---VVVNP---VITHREGLVEG 97
Query: 78 LEGCASLKSLQAK-VPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
LEGC SL L ++ VPR ++++ DE G+ + EG+ AR+ QHE+DHL+G+LF +
Sbjct: 98 LEGCLSLPGLYSEEVPRAERIRVEFQDEEGRRRTLELEGYMARVFQHEIDHLEGVLFFER 157
Query: 137 MLPK 140
LPK
Sbjct: 158 -LPK 160
>gi|332298812|ref|YP_004440734.1| Peptide deformylase [Treponema brennaborense DSM 12168]
gi|332181915|gb|AEE17603.1| Peptide deformylase [Treponema brennaborense DSM 12168]
Length = 187
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 18/121 (14%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQVG+ RLF++ D +++ V+INP++ I +
Sbjct: 43 GLAAPQVGVLKRLFVITADD--------GVRR---------VFINPQI-IATSSETCDYE 84
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
EGC S+ + + R KV + ++E GKP + A+G+ ARIIQHE DHLDG+L+ D
Sbjct: 85 EGCLSIPQIYEHITRPAKVTVQAINEHGKPFTLEADGFLARIIQHENDHLDGILYIDRGD 144
Query: 139 P 139
P
Sbjct: 145 P 145
>gi|328951365|ref|YP_004368700.1| peptide deformylase [Marinithermus hydrothermalis DSM 14884]
gi|328451689|gb|AEB12590.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884]
Length = 197
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 74/125 (59%), Gaps = 7/125 (5%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKD-KVTA 77
GL+APQVG+ RLF+ A EE +E K ++ V +NP ++ Y++
Sbjct: 49 GLAAPQVGISRRLFVAAEYLDEEEEAEDTPLKSRVKQL--YVMVNP---VITYREGHQVG 103
Query: 78 LEGCASLKSLQA-KVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
EGC SL L + +VPR +V++ DE G+P AEG+ AR+IQHE+DHL+G LF D
Sbjct: 104 TEGCLSLPGLYSDEVPRDLRVRVQYQDEYGEPKVLEAEGYLARVIQHELDHLEGKLFIDR 163
Query: 137 MLPKS 141
+ P++
Sbjct: 164 LPPEA 168
>gi|296331148|ref|ZP_06873622.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305674303|ref|YP_003865975.1| peptide deformylase [Bacillus subtilis subsp. spizizenii str. W23]
gi|296151792|gb|EFG92667.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305412547|gb|ADM37666.1| peptide deformylase [Bacillus subtilis subsp. spizizenii str. W23]
Length = 160
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 18/130 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M D GL+APQ+G+ R+ +V D + G I +NPE
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRVAVVDIGD-----NSGRID-----------LVNPE-- 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
IL+ + T +EGC S + V R V++ + GKP A G+ AR +QHEMDH
Sbjct: 77 ILEKSGEQTGIEGCLSFPGVYGDVTRADYVKVRAFNRQGKPFILEARGFLARAVQHEMDH 136
Query: 128 LDGLLFTDSM 137
LDG+LFT +
Sbjct: 137 LDGVLFTSKI 146
>gi|395496647|ref|ZP_10428226.1| peptide deformylase [Pseudomonas sp. PAMC 25886]
gi|395794403|ref|ZP_10473728.1| peptide deformylase [Pseudomonas sp. Ag1]
gi|421140613|ref|ZP_15600612.1| peptide deformylase [Pseudomonas fluorescens BBc6R8]
gi|395341429|gb|EJF73245.1| peptide deformylase [Pseudomonas sp. Ag1]
gi|404508216|gb|EKA22187.1| peptide deformylase [Pseudomonas fluorescens BBc6R8]
Length = 179
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + A P + IN
Sbjct: 33 LIDDMFQTMEHVGGVGLAAPQIGVDLQLVIFGF--------ESSERYPDAPAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G D G+P AEG+ AR++QH
Sbjct: 85 PLITPLSPVLE-EGYEGCLSVPGLRGAVDRYQQIRYEGFDPKGEPIVRIAEGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|365960277|ref|YP_004941844.1| peptide deformylase [Flavobacterium columnare ATCC 49512]
gi|365736958|gb|AEW86051.1| peptide deformylase [Flavobacterium columnare ATCC 49512]
Length = 193
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV---AFPDPEESFSEGDIKKFEMQAFP 57
+K +I M M + GL+APQVGL +RLFIV F D E+ E + +++ F
Sbjct: 27 LKEVIANMYETMYKAHGVGLAAPQVGLAIRLFIVDTEPFSDTEDLSKE---EATQLKGFK 83
Query: 58 HMVWINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
+IN KIL + + A EGC S+ ++ V R+ ++ + DE + +G
Sbjct: 84 K-TFINA--KILKEEGEEWAFNEGCLSIPDVREDVYRHERITIEYFDENFVKKTEVYDGL 140
Query: 117 AARIIQHEMDHLDGLLFTDSM 137
AR+IQHE DH++G+LFTD +
Sbjct: 141 VARVIQHEYDHIEGVLFTDKI 161
>gi|344338535|ref|ZP_08769467.1| Peptide deformylase [Thiocapsa marina 5811]
gi|343801817|gb|EGV19759.1| Peptide deformylase [Thiocapsa marina 5811]
Length = 167
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
G++APQVG R+ IV ++ + G H++ +NPE I+ ++
Sbjct: 47 GIAAPQVGRFQRIVIVDVSGRPKTPNHG-----------HLILVNPE--IVHWEGYAIGR 93
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
EGC S+ V R ++L D G+ + EG+ AR +QHEMDHLDGLLF D ++
Sbjct: 94 EGCLSVPDYTGNVIRATGIRLKAQDPDGREHEYAMEGYEARAVQHEMDHLDGLLFVDRVV 153
Query: 139 PKSLE 143
+ +
Sbjct: 154 SRRTD 158
>gi|296536912|ref|ZP_06898949.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
gi|296262760|gb|EFH09348.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
Length = 176
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 19/142 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQV +PLR+F+ F +G+
Sbjct: 29 IRRLIRDMAETMLDAGGLGLAAPQVHVPLRIFV---------FRQGETVA---------A 70
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NPE+++L D+ EGC S+ L+ V R +++ GLD G EG AR+
Sbjct: 71 LVNPEIELLGPPDQ-RGWEGCLSIPGLRGNVERAQRIAFRGLDVEGDSVEGEVEGLLARV 129
Query: 121 IQHEMDHLDGLLFTDSMLPKSL 142
+QHE DHL+G+L+ M SL
Sbjct: 130 MQHEFDHLNGILYPSRMSDPSL 151
>gi|123967617|ref|YP_001008475.1| peptide deformylase [Prochlorococcus marinus str. AS9601]
gi|158513947|sp|A2BNK7.1|DEF_PROMS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|123197727|gb|ABM69368.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
AS9601]
Length = 201
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 16/124 (12%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQ+G+ L ++ FE A ++ INPE I D+ + +
Sbjct: 72 IGLAAPQIGINKELLVIDV-------------NFEDSAAEPLILINPE--ITDFGTTLNS 116
Query: 78 LE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
E GC S+ + V R ++L DE G+P A+G AR IQHEMDHL+G+LF D
Sbjct: 117 YEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLLARCIQHEMDHLNGILFVDR 176
Query: 137 MLPK 140
+ K
Sbjct: 177 VTSK 180
>gi|365090522|ref|ZP_09328531.1| peptide deformylase [Acidovorax sp. NO-1]
gi|363416453|gb|EHL23565.1| peptide deformylase [Acidovorax sp. NO-1]
Length = 178
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 8/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ M + M+ + GL+APQ+G L+L I +E + + + P V
Sbjct: 29 LHFLVRDMFDTMRSVNGAGLAAPQIGEDLQLVIFGS-------AERNPRYPDRPLVPPTV 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L +++ EGC S+ L+ KVPR+ +++ TG+D G P T +G+ AR+
Sbjct: 82 LLNPVISPLGIEEE-EDWEGCLSVPGLRGKVPRWSRIRYTGVDLHGDPIDRTVDGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLVGKLY 153
>gi|417842405|ref|ZP_12488491.1| Peptide deformylase [Haemophilus haemolyticus M21127]
gi|341951696|gb|EGT78254.1| Peptide deformylase [Haemophilus haemolyticus M21127]
Length = 169
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I+ M + M + + GL+APQV + R+ + EGD + +V
Sbjct: 28 IRKIVDDMFDTMYQEEGIGLAAPQVDILQRIITIDV--------EGDKQN-------QLV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE IL + + EGC S+ +A VPR KV++ LD GK + A+G A
Sbjct: 73 LINPE--ILASEGETGIEEGCLSIPGFRALVPRKEKVKVRALDRDGKEFTLDADGLLAIC 130
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHL+G+LF D + P
Sbjct: 131 IQHEIDHLNGILFVDYLSP 149
>gi|398971489|ref|ZP_10683659.1| peptide deformylase [Pseudomonas sp. GM30]
gi|424924493|ref|ZP_18347854.1| peptide deformylase [Pseudomonas fluorescens R124]
gi|398138884|gb|EJM27897.1| peptide deformylase [Pseudomonas sp. GM30]
gi|404305653|gb|EJZ59615.1| peptide deformylase [Pseudomonas fluorescens R124]
Length = 179
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGF--------EHSERYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G D G+P A G+ AR++QH
Sbjct: 85 PLITPLSPLTE-EGFEGCLSVPGLRGAVDRYQQIRYEGFDPKGEPIVRVASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|340347787|ref|ZP_08670891.1| peptide deformylase [Prevotella dentalis DSM 3688]
gi|433652661|ref|YP_007296515.1| peptide deformylase [Prevotella dentalis DSM 3688]
gi|339608733|gb|EGQ13621.1| peptide deformylase [Prevotella dentalis DSM 3688]
gi|433303194|gb|AGB29009.1| peptide deformylase [Prevotella dentalis DSM 3688]
Length = 187
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K I M ++ GL+APQVG +R+ ++ +E E + H
Sbjct: 27 LKQFIADMYETLEASSGVGLAAPQVGKSIRVVVIDLDVLKEDLPE-------YAGYRH-A 78
Query: 61 WINPEMKILDYKDKVTALE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+IN + +D K K +E GC S+ L V RY ++ + LDE +P EG+ AR
Sbjct: 79 FINAHIVEVDTKSKRETMEEGCLSIPGLSENVTRYSRIHVQYLDEELQPHDEWVEGYLAR 138
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHL+G ++ D + P
Sbjct: 139 VMQHEFDHLEGTMYVDRVTP 158
>gi|94310371|ref|YP_583581.1| peptide deformylase [Cupriavidus metallidurans CH34]
gi|93354223|gb|ABF08312.1| polypeptide or peptide deformylase [Cupriavidus metallidurans CH34]
Length = 177
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++++I M + M+ + GL+APQ+G+ L++ I F + + + + P V
Sbjct: 28 LRLLIDDMFDTMEHANGAGLAAPQIGVDLQVVIFGF--------DRNPRYPDAPTVPKTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ L + EGC S+ L+ VPRY +++ TG D G AE + AR+
Sbjct: 80 LINPSLEPLS-DEMDDGWEGCLSVPGLRGVVPRYTRLKYTGFDMMGNRIERVAEDFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 139 VQHECDHLIGVLY 151
>gi|452974524|gb|EME74344.1| peptide deformylase [Bacillus sonorensis L12]
Length = 160
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 18/134 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M + M D GL+APQ+G+ R +V D G I
Sbjct: 28 LKKLLDNMYDTMLELDGVGLAAPQIGVSKRAAVVDIGD-----ETGRID----------- 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NPE +L+ + + T EGC S L +V R V++ D GKP + AEG+ AR
Sbjct: 72 LVNPE--VLEERGEQTGPEGCLSFPDLYGEVTRSDYVKVRAFDRRGKPFTIEAEGFLARA 129
Query: 121 IQHEMDHLDGLLFT 134
+ HE+DHLDG+LFT
Sbjct: 130 LLHEIDHLDGILFT 143
>gi|427702781|ref|YP_007046003.1| peptide deformylase [Cyanobium gracile PCC 6307]
gi|427345949|gb|AFY28662.1| peptide deformylase [Cyanobium gracile PCC 6307]
Length = 201
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 14/120 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ +L ++ D EE+ A P +V INPE+ T
Sbjct: 72 IGLAAPQVGVHRQLLVIDL-DLEEA------------ATPPLVLINPEITAAGASFN-TY 117
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + V R V+++ DETG+P A+G AR IQHEMDHL+G+LF D +
Sbjct: 118 EEGCLSIPGVYLDVVRPSVVEVSFRDETGRPRRLKADGLLARCIQHEMDHLNGVLFVDRV 177
>gi|303237149|ref|ZP_07323719.1| peptide deformylase [Prevotella disiens FB035-09AN]
gi|302482536|gb|EFL45561.1| peptide deformylase [Prevotella disiens FB035-09AN]
Length = 187
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 10/159 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M D GL+APQ+G +RL ++ ESF E + F H +IN
Sbjct: 30 LIADMFETCSASDGIGLAAPQIGKSIRLVVIDLDVISESFPE-------YKDFKH-AFIN 81
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDET-GKPDSWTAEGWAARIIQ 122
+ D + T EGC SL + V R +++ + +DE + D W +G+ AR+IQ
Sbjct: 82 GHILETDDSETETMEEGCLSLPGIHENVTRPKRIHVKYVDENLEEHDEWI-DGYLARVIQ 140
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
HE DH++G +FTD + P + + + L G Y
Sbjct: 141 HEFDHIEGKVFTDRISPFRKQIIAKKMKALSQGRFNCHY 179
>gi|443632759|ref|ZP_21116938.1| peptide deformylase [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443347582|gb|ELS61640.1| peptide deformylase [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 160
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 18/137 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M + M D GL+APQ+G+ R+ +V D D + ++
Sbjct: 28 VKKLLDDMYDTMLEMDGVGLAAPQIGILKRVAVVDIGD--------DSGRIDL------- 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NPE IL+ + T +EGC S + V R V++ + GKP A G+ AR
Sbjct: 73 -VNPE--ILEKSGEQTGIEGCLSFPGVYGDVTRADYVKVRAFNRQGKPFILEARGFLARA 129
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHEMDHLDG+LFT +
Sbjct: 130 VQHEMDHLDGVLFTSKI 146
>gi|406998745|gb|EKE16631.1| hypothetical protein ACD_10C00885G0004 [uncultured bacterium]
Length = 375
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I + + M GL+APQ+G+ L++ I F E + E ++ P + IN
Sbjct: 1 MIQDLFDTMTDAGGVGLAAPQIGVGLQIVIFGFEKSE--------RYPEAESVPPTILIN 52
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + + EGC SL L+ +VPR+ +++ G D +G+ T +G+ AR++QH
Sbjct: 53 PHITPLGDTEALD-WEGCLSLPGLRGEVPRFTRIRYQGFDPSGQVIDRTVDGFHARVVQH 111
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 112 ECDHLLGTLY 121
>gi|350265885|ref|YP_004877192.1| peptide deformylase [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349598772|gb|AEP86560.1| peptide deformylase [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 160
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 18/130 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M D GL+APQ+G+ R+ +V D D + ++ +NPE
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRVAVVDIGD--------DSGRIDL--------VNPE-- 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
IL+ + T +EGC S + V R V++ + GKP A G+ AR +QHEMDH
Sbjct: 77 ILEKSGEQTGIEGCLSFPGVYGDVTRADYVKVRAFNRQGKPFILEARGFLARAVQHEMDH 136
Query: 128 LDGLLFTDSM 137
LDG+LFT +
Sbjct: 137 LDGVLFTSKI 146
>gi|126695417|ref|YP_001090303.1| peptide deformylase [Prochlorococcus marinus str. MIT 9301]
gi|126542460|gb|ABO16702.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
MIT 9301]
Length = 201
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 16/124 (12%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQ+G+ L ++ FE A ++ INPE I D+ + +
Sbjct: 72 IGLAAPQIGINKELLVIDV-------------NFEDSAAEPLILINPE--ITDFGTTLNS 116
Query: 78 LE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
E GC S+ + V R ++L DE G+P A+G AR IQHEMDHL+G+LF D
Sbjct: 117 YEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLLARCIQHEMDHLNGILFVDR 176
Query: 137 MLPK 140
+ K
Sbjct: 177 VTSK 180
>gi|383450106|ref|YP_005356827.1| Peptide deformylase [Flavobacterium indicum GPTSA100-9]
gi|380501728|emb|CCG52770.1| Peptide deformylase [Flavobacterium indicum GPTSA100-9]
Length = 195
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 10/141 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV---AFPDPEE-SFSEGDIKKFEMQAF 56
+K I M + M GL+APQVGL +RLFIV F D +E S E + K + F
Sbjct: 27 LKETIANMYDTMYHACGVGLAAPQVGLAIRLFIVDTTPFADSDEVSKEEAEQLKDFRRTF 86
Query: 57 PHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
+ + E +I + EGC S+ ++ V R+ K+ + DE + + +G
Sbjct: 87 INATIVKEEGEIWGFN------EGCLSIPDVREDVFRHEKITIEYFDENFEKKTEVFDGL 140
Query: 117 AARIIQHEMDHLDGLLFTDSM 137
AR+IQHE DH++G+LFTD +
Sbjct: 141 IARVIQHEYDHIEGVLFTDHL 161
>gi|422346414|ref|ZP_16427328.1| peptide deformylase 1 [Clostridium perfringens WAL-14572]
gi|373225959|gb|EHP48286.1| peptide deformylase 1 [Clostridium perfringens WAL-14572]
Length = 147
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K+++ M M + GL+APQVG+ R+F+V D S V
Sbjct: 28 IKVLVEDMIETMYENNGVGLAAPQVGILKRIFVVDAMDGAGS----------------RV 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INPE IL+ + T EGC SL V R K+++ LD G AE + AR
Sbjct: 72 FINPE--ILEKSGEQTDEEGCLSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFLARA 129
Query: 121 IQHEMDHLDGLLFTDSML 138
IQHE DHL+G+LF D L
Sbjct: 130 IQHEYDHLEGVLFIDYEL 147
>gi|373467154|ref|ZP_09558455.1| peptide deformylase [Haemophilus sp. oral taxon 851 str. F0397]
gi|371759113|gb|EHO47859.1| peptide deformylase [Haemophilus sp. oral taxon 851 str. F0397]
Length = 189
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I+ M + M + + GL+APQV + R+ + EGD + +V
Sbjct: 48 IRKIVDDMFDTMYQEEGIGLAAPQVDILQRIITIDV--------EGDKQN-------QLV 92
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE IL + + EGC S+ +A VPR KV++ LD GK + A+G A
Sbjct: 93 LINPE--ILASEGETGIEEGCLSIPGFRALVPRKEKVKVRALDRDGKEFTLDADGLLAIC 150
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHL+G+LF D + P
Sbjct: 151 IQHEIDHLNGILFVDYLSP 169
>gi|198282740|ref|YP_002219061.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218666795|ref|YP_002424934.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270]
gi|415985161|ref|ZP_11559539.1| polypeptide deformylase [Acidithiobacillus sp. GGI-221]
gi|198247261|gb|ACH82854.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218519008|gb|ACK79594.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270]
gi|339834697|gb|EGQ62440.1| polypeptide deformylase [Acidithiobacillus sp. GGI-221]
Length = 167
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 15/126 (11%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIK-KFEMQAFPHMVWINPEMKILDYKDKVTA 77
G++APQV R+ IV D++ K MV INPE+ ++ V
Sbjct: 47 GIAAPQVDRAQRIVIV------------DVRPKLGDDCHGLMVLINPELAA--WEGMVVG 92
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ V R ++Q+ D G+ S+ EG+ AR +QHEMDHLDGLLF D +
Sbjct: 93 REGCMSVPDFTGNVIRAERIQVQAQDVLGRERSYECEGFEARAVQHEMDHLDGLLFLDRL 152
Query: 138 LPKSLE 143
+ + ++
Sbjct: 153 VSRKVD 158
>gi|344198843|ref|YP_004783169.1| peptide deformylase [Acidithiobacillus ferrivorans SS3]
gi|343774287|gb|AEM46843.1| Peptide deformylase [Acidithiobacillus ferrivorans SS3]
Length = 167
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIK-KFEMQAFPHMVWINPEMKILDYKDKVTA 77
G++APQV P R+ IV D++ K M+ INPE+ ++
Sbjct: 47 GIAAPQVDRPQRIVIV------------DVRPKLGDDCHGRMILINPELAA--WEGMAVG 92
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ V R ++Q+ D +G+ S+ G+ AR +QHEMDHLDG LF D +
Sbjct: 93 REGCMSVPDFTGNVIRAERIQVQAQDVSGRERSYECAGFEARAVQHEMDHLDGFLFLDRL 152
Query: 138 LPKSLE 143
+ + ++
Sbjct: 153 VSRKID 158
>gi|389795887|ref|ZP_10198995.1| peptide deformylase [Rhodanobacter fulvus Jip2]
gi|388430070|gb|EIL87275.1| peptide deformylase [Rhodanobacter fulvus Jip2]
Length = 178
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M GL+APQ+G+ L+L I F D E + + A P +
Sbjct: 30 LDALIADMFDTMHDAGGVGLAAPQIGVDLQLVIFGF-DQNERYPDA-------PAVPRTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L +D EGC S+ L+ V RY ++ G+D G TAEG+ AR+
Sbjct: 82 LLNPLITPLS-QDMEEGWEGCLSVPGLRGAVSRYSLIRYQGVDPQGTRIDRTAEGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|291613763|ref|YP_003523920.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
gi|291583875|gb|ADE11533.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
Length = 177
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 69/140 (49%), Gaps = 23/140 (16%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVA------FPDPEESFSEGDIKKFEMQ 54
+ ++ M+ M D GL+APQ+G+ LR+ I +PD E
Sbjct: 29 LHALLKDMRETMLAMDGVGLAAPQIGVDLRVVIFEVNQNPRYPDAE-------------- 74
Query: 55 AFPHMVWINPEMKIL-DYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTA 113
P V INP + L D ++ EGC S+ ++ VPRY ++ G DE G T
Sbjct: 75 TVPQTVLINPVLTPLSDVMEE--GWEGCLSVPGMRGLVPRYTHLRYQGRDEYGALIDRTV 132
Query: 114 EGWAARIIQHEMDHLDGLLF 133
G+ AR++QHE DHLDG+L+
Sbjct: 133 SGFHARVVQHECDHLDGILY 152
>gi|388455635|ref|ZP_10137930.1| polypeptide deformylase [Fluoribacter dumoffii Tex-KL]
gi|397665101|ref|YP_006506639.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Legionella
pneumophila subsp. pneumophila]
gi|395128512|emb|CCD06728.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Legionella
pneumophila subsp. pneumophila]
Length = 172
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 11/138 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQ-AFPHM 59
+K +I M +M G++APQ+G+ R+ + F K+ + + P
Sbjct: 29 LKELIKTMFGIMADKGAVGVAAPQIGISKRVIV---------FGTNYTKRRKPEYPIPDT 79
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
INP +KIL ++ T EGC + L +VPR +++ +G D G + A G AR
Sbjct: 80 ALINPALKILS-QEIQTGYEGCLNCGELMGEVPRAMEIEYSGFDIDGNRITKKASGLEAR 138
Query: 120 IIQHEMDHLDGLLFTDSM 137
I+QHE+DHL+G LF D +
Sbjct: 139 ILQHEIDHLNGFLFLDRV 156
>gi|398912837|ref|ZP_10656160.1| peptide deformylase [Pseudomonas sp. GM49]
gi|398181700|gb|EJM69252.1| peptide deformylase [Pseudomonas sp. GM49]
Length = 179
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G+D G+P A G+ AR++QH
Sbjct: 85 PLITPLSPTLE-EGFEGCLSVPGLRGAVQRYQQIRYEGVDPKGEPIVRIASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|343518386|ref|ZP_08755378.1| peptide deformylase [Haemophilus pittmaniae HK 85]
gi|343393674|gb|EGV06227.1| peptide deformylase [Haemophilus pittmaniae HK 85]
Length = 158
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I+ M + M + + GL+APQV + R+ + EGD + +V
Sbjct: 28 IRKIVDDMFDTMYQEEGIGLAAPQVDILQRIITIDV--------EGDKQN-------QLV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE IL + + EGC S+ +A VPR KV + LD G+ + A+G A
Sbjct: 73 LINPE--ILASEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRNGQEFTLNADGLLAIC 130
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHL+G+LF D + P
Sbjct: 131 IQHEIDHLNGILFVDYLSP 149
>gi|423015781|ref|ZP_17006502.1| peptide deformylase [Achromobacter xylosoxidans AXX-A]
gi|338781284|gb|EGP45677.1| peptide deformylase [Achromobacter xylosoxidans AXX-A]
Length = 177
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M M GL+APQ+G+ L+L I F D E + + A P +
Sbjct: 28 LHALIEDMFETMAAAQGVGLAAPQIGVDLQLVIFGF-DRNERYPDA-------PAVPQTI 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP + L + EGC S+ L+ VPRYR+++ G D G+ AEG+ AR+
Sbjct: 80 LCNPVITPLS-DEMEDGWEGCLSVPGLRGLVPRYRRIRYQGKDPYGRDIDREAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHECDHLIGRLY 151
>gi|26991243|ref|NP_746668.1| peptide deformylase [Pseudomonas putida KT2440]
gi|32363154|sp|Q88EA7.1|DEF2_PSEPK RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|24986296|gb|AAN70132.1|AE016653_3 polypeptide deformylase [Pseudomonas putida KT2440]
Length = 178
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M+ GL+APQVG+ L+L I F E + + +A P +
Sbjct: 30 LQQLIDDMFETMRHVGGVGLAAPQVGIDLQLVIFGFERSE--------RYPDAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + + + EGC S+ L+ VPR++ + G+D G P + A+G+ AR+
Sbjct: 82 LLNPVITPTSSEVE-DGWEGCLSVPGLRGVVPRFKHICYQGIDPQGSPINRFADGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|325963300|ref|YP_004241206.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
gi|323469387|gb|ADX73072.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
Length = 226
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFP---DPEESFSEGDIKKFEMQAFPHMV 60
+I M+ VM GL+APQ+G+PL++ +V DPE + ++K F +
Sbjct: 58 LISLMREVMHEAPGVGLAAPQLGIPLQIAVVEDQYDVDPEAAA----LRKRSPLEF--LA 111
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP L D + EGC SL LQA V R KV L G EGW ARI
Sbjct: 112 IVNPRYTPLG-TDMASFYEGCLSLNGLQAVVARPEKVLLEFQAPDGSGVQREFEGWQARI 170
Query: 121 IQHEMDHLDGLLFTDSMLPKSLEC 144
+QHE DHL+G+L+ D +SL
Sbjct: 171 VQHETDHLNGVLYVDRAQLRSLSS 194
>gi|383786925|ref|YP_005471494.1| peptide deformylase [Fervidobacterium pennivorans DSM 9078]
gi|383109772|gb|AFG35375.1| peptide deformylase [Fervidobacterium pennivorans DSM 9078]
Length = 166
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 75/149 (50%), Gaps = 21/149 (14%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+++I+ + K M D GL+APQVG+ LR F D F+M
Sbjct: 24 VRVILEEFKMTMYAEDGVGLAAPQVGMSLRFF-----------GMDDGSGFKM------- 65
Query: 61 WINPEMKILDYKD-KVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+NPE I+++ D K EGC S+ + A V RY+ V++ DE G EG+ AR
Sbjct: 66 IVNPE--IIEHSDEKELGEEGCLSIPGVFADVWRYKWVRVRYQDEHGVYHEELLEGYPAR 123
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQ 148
I QHE DHLDG+LF D + K+ + Q
Sbjct: 124 IFQHEYDHLDGVLFIDHLDTKTRTALAQQ 152
>gi|148546572|ref|YP_001266674.1| peptide deformylase [Pseudomonas putida F1]
gi|395447840|ref|YP_006388093.1| peptide deformylase [Pseudomonas putida ND6]
gi|148510630|gb|ABQ77490.1| peptide deformylase [Pseudomonas putida F1]
gi|388561837|gb|AFK70978.1| peptide deformylase [Pseudomonas putida ND6]
Length = 178
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M+ GL+APQ+G+ L+L I F E + + +A P +
Sbjct: 30 LQQLIDDMFETMRHVGGVGLAAPQIGIDLQLVIFGFERSE--------RYPDAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + + + EGC S+ L+ VPR++ + G+D G P + A+G+ AR+
Sbjct: 82 LLNPVITPTSSEIE-DGWEGCLSVPGLRGVVPRFKHIGYQGIDPQGNPINRFADGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|383315762|ref|YP_005376604.1| peptide deformylase [Frateuria aurantia DSM 6220]
gi|379042866|gb|AFC84922.1| peptide deformylase [Frateuria aurantia DSM 6220]
Length = 179
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M + M GL+APQ+G+ L+L I F E + E P +
Sbjct: 30 LKQLIADMFDTMHAAGGVGLAAPQIGVDLQLVIFGF--------EQADRYPEAPPVPRTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L +D EGC S+ L+ V RY ++ G+D G+ TAEG+ AR+
Sbjct: 82 LLNPVITHLS-QDMEEGWEGCLSVPGLRGAVNRYTLIRYEGIDPDGEVIDRTAEGFHARV 140
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHE DHL G L+ M
Sbjct: 141 VQHECDHLIGRLYPSRM 157
>gi|302187708|ref|ZP_07264381.1| peptide deformylase [Pseudomonas syringae pv. syringae 642]
gi|422616674|ref|ZP_16685379.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
M301072]
gi|422632436|ref|ZP_16697605.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
gi|422667293|ref|ZP_16727157.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
50252]
gi|440722908|ref|ZP_20903278.1| peptide deformylase [Pseudomonas syringae BRIP34876]
gi|440727341|ref|ZP_20907577.1| peptide deformylase [Pseudomonas syringae BRIP34881]
gi|443642779|ref|ZP_21126629.1| Peptide deformylase [Pseudomonas syringae pv. syringae B64]
gi|330896888|gb|EGH28478.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
M301072]
gi|330942465|gb|EGH45062.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
gi|330977866|gb|EGH77769.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
50252]
gi|440360484|gb|ELP97756.1| peptide deformylase [Pseudomonas syringae BRIP34876]
gi|440364106|gb|ELQ01246.1| peptide deformylase [Pseudomonas syringae BRIP34881]
gi|443282796|gb|ELS41801.1| Peptide deformylase [Pseudomonas syringae pv. syringae B64]
Length = 179
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M M GL+APQ+G+ L+L I F E + + + +A P +
Sbjct: 30 LDTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGF--------ERNERYPQAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L + EGC S+ L+ V RY+ ++ G D G+P A G+ AR+
Sbjct: 82 LINPLITPLSPTLE-EGWEGCLSVPGLRGMVDRYQSIRYEGFDPQGQPIERVAHGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|87125300|ref|ZP_01081146.1| putative formylmethionine deformylase [Synechococcus sp. RS9917]
gi|86167069|gb|EAQ68330.1| putative formylmethionine deformylase [Synechococcus sp. RS9917]
Length = 201
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 61/120 (50%), Gaps = 14/120 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ +L ++ E A P +V INPE+ T
Sbjct: 72 IGLAAPQVGVHKQLLVIDL-------------DIENAAAPPLVLINPEITSASASVD-TY 117
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + V R +QL+ DE G+P + A+G AR IQHEMDHL G+LF D +
Sbjct: 118 EEGCLSIPGVYLDVVRPSAIQLSYRDEMGRPRTMKADGLMARCIQHEMDHLKGVLFVDRV 177
>gi|398841050|ref|ZP_10598277.1| peptide deformylase [Pseudomonas sp. GM102]
gi|398109315|gb|EJL99253.1| peptide deformylase [Pseudomonas sp. GM102]
Length = 179
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + +EGC S+ L+ V RY++++ G D G+P A G+ AR++QH
Sbjct: 85 PLITPLSPTLE-EGVEGCLSVPGLRGAVDRYQQIRYEGFDPKGEPIVRIASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|374385759|ref|ZP_09643262.1| peptide deformylase [Odoribacter laneus YIT 12061]
gi|373225461|gb|EHP47795.1| peptide deformylase [Odoribacter laneus YIT 12061]
Length = 217
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 18/123 (14%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYK-DKVTA 77
G++APQVG+ R IVA +++F+ Q P V++NPE I+ Y ++ +
Sbjct: 95 GIAAPQVGILRR--IVA------------VQRFDKQGEPFEVFVNPE--IIRYSAEQQSG 138
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLD-ETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
EGC SL + V R ++V L LD T + +G+ A I+QHE+DHLDG LFTD
Sbjct: 139 EEGCLSLPDVSGCVSRAKQVTLRYLDGRTFEKREEVIDGFTAVIVQHEIDHLDGRLFTDL 198
Query: 137 MLP 139
+LP
Sbjct: 199 LLP 201
>gi|397695851|ref|YP_006533734.1| peptide deformylase [Pseudomonas putida DOT-T1E]
gi|421524043|ref|ZP_15970670.1| peptide deformylase [Pseudomonas putida LS46]
gi|397332581|gb|AFO48940.1| peptide deformylase [Pseudomonas putida DOT-T1E]
gi|402752288|gb|EJX12795.1| peptide deformylase [Pseudomonas putida LS46]
Length = 178
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M+ GL+APQ+G+ L+L I F E + + +A P +
Sbjct: 30 LQQLIDDMFETMRHVGGVGLAAPQIGIDLQLVIFGFERSE--------RYPDAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + + + EGC S+ L+ VPR++ + G+D G P + A+G+ AR+
Sbjct: 82 LLNPVITPTSSEIE-DGWEGCLSVPGLRGVVPRFKHIGYQGIDPQGNPINRFADGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|386010946|ref|YP_005929223.1| Def_2 [Pseudomonas putida BIRD-1]
gi|313497652|gb|ADR59018.1| Def_2 [Pseudomonas putida BIRD-1]
Length = 178
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M+ GL+APQVG+ L+L I F E + + +A P +
Sbjct: 30 LQQLIDDMFETMRHVGGVGLAAPQVGIDLQLVIFGFERSE--------RYPDAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + + + EGC S+ L+ VPR++ + G+D G P + A+G+ AR+
Sbjct: 82 LLNPVITPTSSEVE-DGWEGCLSVPGLRGVVPRFKHICYQGIDPQGSPINRFADGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|221633590|ref|YP_002522816.1| peptide deformylase [Thermomicrobium roseum DSM 5159]
gi|254767609|sp|B9L0C1.1|DEF_THERP RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|221156095|gb|ACM05222.1| peptide deformylase [Thermomicrobium roseum DSM 5159]
Length = 176
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQ+G+ R+ +VA P + EGD + INPE I+ +
Sbjct: 45 LGLAAPQIGVLRRIIVVAIP--PDYVEEGD-------PGVELTLINPE--IVRASGRQVG 93
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
LEGC S+ +VPR V + LD G+ G AR++QHE+DHL+G+LF D +
Sbjct: 94 LEGCLSIPGWYGEVPRSMHVTVKALDLDGREVRVKGSGLLARVLQHEIDHLEGILFVDRI 153
Query: 138 LPKS 141
+S
Sbjct: 154 EDRS 157
>gi|384107655|ref|ZP_10008553.1| peptide deformylase [Treponema sp. JC4]
gi|383870511|gb|EID86113.1| peptide deformylase [Treponema sp. JC4]
Length = 191
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 28/133 (21%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM- 66
M M D GL+ PQVG LR+F++ ++ D+++ V+INP++
Sbjct: 34 MFETMIEADGVGLAGPQVGKNLRMFVL--------MADDDVRR---------VFINPQII 76
Query: 67 ----KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
++ DY EGC S+ + + R KV + L+E GKP + A+G ARIIQ
Sbjct: 77 KTSEELGDYD------EGCLSIPQVYETIRRPVKVTVQALNENGKPFTLDADGLLARIIQ 130
Query: 123 HEMDHLDGLLFTD 135
HE DHLDG++F D
Sbjct: 131 HEYDHLDGIVFID 143
>gi|221066139|ref|ZP_03542244.1| peptide deformylase [Comamonas testosteroni KF-1]
gi|220711162|gb|EED66530.1| peptide deformylase [Comamonas testosteroni KF-1]
Length = 179
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQ+G L++ + +P + + I P V INP + + ++++
Sbjct: 47 GLAAPQIGEDLQMVVFGSGEPNPRYPDAPI-------VPRTVLINPVITPIGEEEQLD-W 98
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLF 133
EGC S+ L+A VPR+ KV+ TG D G P T +G+ AR++QHE DHL G L+
Sbjct: 99 EGCLSVPGLRAMVPRWSKVRYTGFDLYGDPIDRTVDGFHARVVQHECDHLWGKLY 153
>gi|167957315|ref|ZP_02544389.1| peptide deformylase [candidate division TM7 single-cell isolate
TM7c]
Length = 211
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 17/124 (13%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV-WINPEMKILDYKDKVTA 77
L+A QV R+ IV +F+ ++ H INPE I+ Y+ ++T
Sbjct: 73 ALAAVQVDKLERIVIVR-------------SEFDNKSNNHFTALINPE--IIKYEGEITY 117
Query: 78 -LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
EGC S+ + KVPRY KV++ L+E GK AEG+ AR++QHE+DH +G++F D
Sbjct: 118 DYEGCLSVSKVYGKVPRYNKVRVKALNEDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDH 177
Query: 137 MLPK 140
+ K
Sbjct: 178 IKNK 181
>gi|386041821|ref|YP_005960775.1| peptide deformylase [Paenibacillus polymyxa M1]
gi|343097859|emb|CCC86068.1| peptide deformylase [Paenibacillus polymyxa M1]
Length = 165
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 65/128 (50%), Gaps = 18/128 (14%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M + GL+APQVG+ RL +V D G IK INPE
Sbjct: 35 MADTMYEAEGVGLAAPQVGILKRLIVVDAGD-----EHGLIK-----------MINPE-- 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
I+ + + EGC S+ L V R KV + GL+ GK + TA G +R QHE+DH
Sbjct: 77 IVAEEGEQLGPEGCLSIPGLNGDVRRAEKVTVKGLNREGKAITVTATGLLSRAFQHEIDH 136
Query: 128 LDGLLFTD 135
L+G+LFTD
Sbjct: 137 LNGVLFTD 144
>gi|408676539|ref|YP_006876366.1| Peptide deformylase [Streptomyces venezuelae ATCC 10712]
gi|328880868|emb|CCA54107.1| Peptide deformylase [Streptomyces venezuelae ATCC 10712]
Length = 187
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 14/134 (10%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M M + GL+A QVG+ LR+F+ PD EE+ G + +N
Sbjct: 41 LVEDMFATMYAANGVGLAANQVGVGLRVFVYDCPDDEETRHLGHV-------------VN 87
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + D D V EGC SL L+A PRY + + G+ G P G+ AR +QH
Sbjct: 88 PRLVAAD-GDVVRGPEGCLSLPGLEAPTPRYDRAVVEGVRLDGTPVRVEGTGFFARCLQH 146
Query: 124 EMDHLDGLLFTDSM 137
E DHL+G ++ D +
Sbjct: 147 ETDHLEGGVYADHV 160
>gi|386758295|ref|YP_006231511.1| peptide deformylase [Bacillus sp. JS]
gi|384931577|gb|AFI28255.1| peptide deformylase [Bacillus sp. JS]
Length = 160
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 18/130 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M D GL+APQ+G+ R+ +V D D + ++ +NPE
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRVAVVDIGD--------DRGRIDL--------VNPE-- 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
IL+ + T +EGC S + V R V++ + GKP A G+ AR +QHEMDH
Sbjct: 77 ILEKSGEQTGIEGCLSFPGVYGNVTRADYVKVRAFNRQGKPFILEARGFLARAVQHEMDH 136
Query: 128 LDGLLFTDSM 137
LDG+LFT +
Sbjct: 137 LDGVLFTSKI 146
>gi|334130481|ref|ZP_08504278.1| Peptide deformylase [Methyloversatilis universalis FAM5]
gi|333444590|gb|EGK72539.1| Peptide deformylase [Methyloversatilis universalis FAM5]
Length = 176
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ + + M+ D GL+APQ+G+ LR+ I P + + P V
Sbjct: 28 LDALVRDLIDTMEAADGAGLAAPQIGVDLRVVIFGGLPPA--------RYPDAPVVPFTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP ++ + + EGC S+ L+ VPR++++ G D+ G P +G+ AR+
Sbjct: 80 LVNPVLEPMG-NEMEDGWEGCLSVPGLRGVVPRHQRLHYRGFDQHGVPIDRVVQGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHLDG+L+
Sbjct: 139 VQHECDHLDGVLY 151
>gi|418466229|ref|ZP_13037157.1| peptide deformylase [Streptomyces coelicoflavus ZG0656]
gi|371553142|gb|EHN80362.1| peptide deformylase [Streptomyces coelicoflavus ZG0656]
Length = 218
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 69/140 (49%), Gaps = 10/140 (7%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMVWINP 64
++ M GL+APQVG+ L + ++ P P E + G + + P V +NP
Sbjct: 57 LRLTMHAAPGVGLAAPQVGVGLGIAVIEDPAPVPDEVRVARGRVPQ------PFRVLVNP 110
Query: 65 EMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHE 124
+ + + EGC S+ QA V R+ +V+L LDE G+ GW ARI+QHE
Sbjct: 111 SYEPVG-AGRAAFFEGCLSVPGWQAVVARHAEVRLLALDEHGRTVDEVFTGWPARIVQHE 169
Query: 125 MDHLDGLLFTDSMLPKSLEC 144
DHL G L+ D +SL
Sbjct: 170 TDHLGGTLYLDRAESRSLSS 189
>gi|399061466|ref|ZP_10746138.1| peptide deformylase [Novosphingobium sp. AP12]
gi|398035685|gb|EJL28918.1| peptide deformylase [Novosphingobium sp. AP12]
Length = 179
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ II M + M + GL+APQ+G+ LRL I F E + + + P
Sbjct: 28 LRPIIADMYDTMHGANGVGLAAPQIGVDLRLMIFGF--------EANPRYPDEAPVPVTT 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP +++L +D EGC S+ ++ VPR+ ++ G E G A + AR+
Sbjct: 80 LINPWLEVLS-EDVENGWEGCLSVPGMRGLVPRFTHIRYGGTLEDGAALIREARSFHARV 138
Query: 121 IQHEMDHLDGLLF 133
QHE DHLDG+L+
Sbjct: 139 FQHEFDHLDGVLY 151
>gi|436838528|ref|YP_007323744.1| peptide deformylase [Fibrella aestuarina BUZ 2]
gi|384069941|emb|CCH03151.1| peptide deformylase [Fibrella aestuarina BUZ 2]
Length = 192
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 7/148 (4%)
Query: 19 GLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG LRLF+V P E+ + D + F V+INPE+ D D+
Sbjct: 45 GLAAPQVGQSLRLFVVDGTPMNEDETPDDDEFDPSLVGF-KKVFINPEILEED-GDEWAF 102
Query: 78 LEGCASLKSLQAKV--PRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+ ++ V P + K++ LD + + +G AARIIQHE DHLDG LFTD
Sbjct: 103 EEGCLSIPGIRNDVYRPEFIKIRYVDLDWNEHVEEY--DGIAARIIQHEYDHLDGKLFTD 160
Query: 136 SMLPKSLECVCWQDINLQNGLLELRYYM 163
M P + + + ++ G +++ Y M
Sbjct: 161 YMSPLKRQLLKKRLADITKGNVDVEYKM 188
>gi|392381943|ref|YP_005031140.1| formylmethionine deformylase [Azospirillum brasilense Sp245]
gi|356876908|emb|CCC97701.1| formylmethionine deformylase [Azospirillum brasilense Sp245]
Length = 180
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 66/121 (54%), Gaps = 13/121 (10%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVT- 76
GL+APQV LR+ + P + G ++ V INP ++ LD D V
Sbjct: 46 VGLAAPQVHESLRMIVFRVP----AMRSGG------ESVEPTVLINPVIEPLD--DGVEH 93
Query: 77 ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
+EGC S+ L+ VPR+ +++ G+ G+P A G+ AR+IQHE DHLDG+L+ D
Sbjct: 94 GMEGCLSIPELRGVVPRFARIRYRGVGLDGEPIEREASGFHARVIQHECDHLDGVLYIDR 153
Query: 137 M 137
M
Sbjct: 154 M 154
>gi|406955167|gb|EKD83746.1| peptide deformylase [uncultured bacterium]
Length = 175
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 64/137 (46%), Gaps = 20/137 (14%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M M GL+APQVG+ LRL I+ D +V
Sbjct: 27 VRRLVEDMFETMNEAKGVGLAAPQVGVNLRLAIIDVGDDP------------------LV 68
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP +I+ K T EGC S L KV R +KV D G AEG AR
Sbjct: 69 LINP--RIIKSSGKETCDEGCLSFPGLTEKVERAKKVVAEATDIDGSLYEIEAEGLLARA 126
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHE+DHLDG+LF D +
Sbjct: 127 IQHELDHLDGVLFIDRI 143
>gi|258515528|ref|YP_003191750.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771]
gi|257779233|gb|ACV63127.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771]
Length = 164
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 22/145 (15%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
M + M GL+APQ+G+ R+ +V D E E INP
Sbjct: 34 NMADTMYDAKGVGLAAPQIGISKRVVVV---DIGEGLLE---------------LINP-- 73
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
+I+ + T EGC S+ +VPR K+Q+ L+ G+ + +G+ AR +QHE+D
Sbjct: 74 RIIKASGQETDTEGCLSIPGTLGQVPRASKIQVQALNRNGEQVEYHVKGFMARAVQHELD 133
Query: 127 HLDGLLFTDSM--LPKSLECVCWQD 149
HLDG+LF D L K E V ++
Sbjct: 134 HLDGILFIDKAESLRKQFEDVVLEN 158
>gi|392375901|ref|YP_003207734.1| peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2)
[Candidatus Methylomirabilis oxyfera]
gi|258593594|emb|CBE69935.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2)
[Candidatus Methylomirabilis oxyfera]
Length = 176
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 15/146 (10%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ ++ G++APQV + ++ ++ S+G+ + + P V IN
Sbjct: 34 LIDDMIETMREYEGVGIAAPQVHVSKQIAVIE--------SKGNTRYPDAPEIPLTVLIN 85
Query: 64 PEMKIL--DYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
E+ L + +D EGC SL + + PRY++V+ LD G+ + A G+ AR++
Sbjct: 86 LEVTPLAPELEDD---WEGCLSLIDFRGQTPRYQQVRAKALDREGRSFEFVATGFHARVL 142
Query: 122 QHEMDHLDGLLFTDSMLPKSLECVCW 147
QHE DHL G LF D M KSLE + +
Sbjct: 143 QHERDHLLGKLFIDRM--KSLETLSY 166
>gi|323359861|ref|YP_004226257.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum
StLB037]
gi|323276232|dbj|BAJ76377.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum
StLB037]
Length = 188
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 66/141 (46%), Gaps = 17/141 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M M GL+APQVG+ LR+F + D E G V
Sbjct: 28 VRTLVADMFETMDAAPGVGLAAPQVGVGLRIFTYTYEDDEGLPWRG-------------V 74
Query: 61 WINPEMKIL----DYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
INPE+ I Y D EGC S + + R LTG+D G+P GW
Sbjct: 75 VINPELWIRPLEPGYPDPDDESEGCLSFPGERFPLRRSDAALLTGVDLDGRPVRIEVTGW 134
Query: 117 AARIIQHEMDHLDGLLFTDSM 137
ARI+QHE DHLDG+L+ D +
Sbjct: 135 RARILQHEFDHLDGILYVDRL 155
>gi|296125655|ref|YP_003632907.1| peptide deformylase [Brachyspira murdochii DSM 12563]
gi|296017471|gb|ADG70708.1| peptide deformylase [Brachyspira murdochii DSM 12563]
Length = 189
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAF-PHMVWINPEMKILDYKDKVTA 77
GL+A Q+G+ RL +++ PD F + F++ P ++W E +IL+
Sbjct: 45 GLAAVQIGILKRLIVISVPD----FDDETKPDFKLALINPEIIWHGEEKEILE------- 93
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S ++ V RY+++++ LD+ G AEG+ A+++QHE+DH +G+ F D +
Sbjct: 94 -EGCLSFPEIRDDVARYKEIKVKYLDKEGNEQILEAEGYIAKVLQHEIDHTNGISFIDRL 152
>gi|148655206|ref|YP_001275411.1| peptide deformylase [Roseiflexus sp. RS-1]
gi|254767600|sp|A5US58.1|DEF_ROSS1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|148567316|gb|ABQ89461.1| peptide deformylase [Roseiflexus sp. RS-1]
Length = 185
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M M GL+APQ+G+ RL +++ P E +G K E+ + V
Sbjct: 32 LKQLVADMFETMHAASGVGLAAPQIGITQRLAVISIPPVVEERPDG--SKVEVAPEQNFV 89
Query: 61 WINPEM-KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDS-WTAEGWAA 118
INPE+ K D +D LEGC SL +VPR V + D G+ A G
Sbjct: 90 LINPEIIKASDQED--VGLEGCLSLPGWYGEVPRAAWVTVEYTDLNGRRQRIRRATGLLG 147
Query: 119 RIIQHEMDHLDGLLFTDSM 137
R +QHE+DHLDG+LFT+ +
Sbjct: 148 RALQHEIDHLDGILFTERI 166
>gi|163792491|ref|ZP_02186468.1| Formylmethionine deformylase [alpha proteobacterium BAL199]
gi|159182196|gb|EDP66705.1| Formylmethionine deformylase [alpha proteobacterium BAL199]
Length = 183
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M ++ GL+APQ+G+ R+ I PD + D P
Sbjct: 29 IRQLIDDMVASLEEAGGIGLAAPQIGILQRVLIFWVPDARATNEPDD------GPCPLTA 82
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ LD + EGC S+ L+ +VPR+ ++++T G+P G AR+
Sbjct: 83 LINPVLEPLDDR-MALGWEGCLSIPGLRGEVPRHLRMRVTATTPEGEPFEAIVAGTRARV 141
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHE+DHLDG+L+ D M
Sbjct: 142 LQHEVDHLDGILYLDRM 158
>gi|329954514|ref|ZP_08295605.1| peptide deformylase [Bacteroides clarus YIT 12056]
gi|328527482|gb|EGF54479.1| peptide deformylase [Bacteroides clarus YIT 12056]
Length = 184
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M D GL+APQ+GLP+R+ +V E + E +K + A H+
Sbjct: 27 LKELIQNMFETMDHADGVGLAAPQIGLPIRVVVVDLDVLSEDYPEYKGFRKAYINA--HI 84
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+ ++ E +V+ EGC SL + V R K+++ LDE EG+ AR
Sbjct: 85 LEVSGE--------EVSMEEGCLSLPGIHESVKRGNKIRVKYLDEDLVEHDEVVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHLDG +F D + P
Sbjct: 137 VMQHEFDHLDGKMFIDHISP 156
>gi|307565540|ref|ZP_07628020.1| peptide deformylase [Prevotella amnii CRIS 21A-A]
gi|307345699|gb|EFN91056.1| peptide deformylase [Prevotella amnii CRIS 21A-A]
Length = 186
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M D GL+APQVG P+R+ ++ ++F E + F H +IN
Sbjct: 30 LIADMFETCSASDGVGLAAPQVGKPIRVVVIDLDVVSDNFPE-------YKGFRH-AFIN 81
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
+ +D + EGC SL L KV R ++V++ +DE + G+ AR++QH
Sbjct: 82 GHITEVDDTETEVMEEGCLSLPGLHEKVERPKRVRVKWIDENMEEHHEWLSGFLARVVQH 141
Query: 124 EMDHLDGLLFTDSMLP 139
E DHL+G +FTD + P
Sbjct: 142 EFDHLEGKVFTDRVSP 157
>gi|431931515|ref|YP_007244561.1| peptide deformylase [Thioflavicoccus mobilis 8321]
gi|431829818|gb|AGA90931.1| peptide deformylase [Thioflavicoccus mobilis 8321]
Length = 177
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
G++APQVG R+ IV P+ + + G H+V +NPE I+ ++
Sbjct: 47 GIAAPQVGRFQRIVIVDVPEKKGVTTHG-----------HLVLVNPE--IVHWEGYEIGR 93
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
EGC S+ V R +V+L G EG+ AR++QHE+DHLDGLLF D ++
Sbjct: 94 EGCLSVPDYTGNVTRAARVRLHAQGVDGTEQQLEMEGFEARVVQHEIDHLDGLLFVDRVV 153
Query: 139 PKSLE 143
+ +
Sbjct: 154 SRRTD 158
>gi|422673357|ref|ZP_16732717.1| peptide deformylase [Pseudomonas syringae pv. aceris str. M302273]
gi|330971091|gb|EGH71157.1| peptide deformylase [Pseudomonas syringae pv. aceris str. M302273]
Length = 179
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M M GL+APQ+G+ L+L I F E + + + +A P +
Sbjct: 30 LDTLIADMFETMHSVGGVGLAAPQIGVDLQLVIFGF--------ERNERYPQAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L + EGC S+ L+ V RY+ ++ G D G+P A G+ AR+
Sbjct: 82 LINPLITPLSPTLE-EGWEGCLSVPGLRGMVDRYQSIRYEGFDPQGQPIERVAHGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|218130013|ref|ZP_03458817.1| hypothetical protein BACEGG_01596 [Bacteroides eggerthii DSM 20697]
gi|317476772|ref|ZP_07936015.1| polypeptide deformylase [Bacteroides eggerthii 1_2_48FAA]
gi|217987816|gb|EEC54142.1| peptide deformylase [Bacteroides eggerthii DSM 20697]
gi|316906947|gb|EFV28658.1| polypeptide deformylase [Bacteroides eggerthii 1_2_48FAA]
Length = 184
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M D GL+APQ+GLP+R+ +V E + E +K + A H+
Sbjct: 27 LKELIQNMFETMDHADGVGLAAPQIGLPIRVVVVDLDVLSEDYPEYKGFRKAYINA--HI 84
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+ ++ E +V+ EGC SL + V R K+++ LDE EG+ AR
Sbjct: 85 LEVSGE--------EVSMEEGCLSLPGIHESVKRGNKIRVKYLDEDLVEHDEIVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHLDG +F D + P
Sbjct: 137 VMQHEFDHLDGKMFIDHLSP 156
>gi|209965357|ref|YP_002298272.1| peptide deformylase [Rhodospirillum centenum SW]
gi|209958823|gb|ACI99459.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
Length = 186
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Query: 6 LQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPE 65
L M M GL+APQV + R+ + P + GD+ E Q V +NP
Sbjct: 34 LDMIETMVDAPGIGLAAPQVHVGWRIVVFRVPGDRATGGAGDLP-MEPQ-----VLVNPA 87
Query: 66 MKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEM 125
+ L ++ V EGC S+ L+ VPR+ +++ GL G A G AR++QHE+
Sbjct: 88 YEPLS-EEMVEGWEGCLSIPGLRGVVPRFARIRYRGLSLDGTAVEREASGTHARVVQHEI 146
Query: 126 DHLDGLLFTDSM 137
DHLDG+L+ D M
Sbjct: 147 DHLDGILYIDRM 158
>gi|325577099|ref|ZP_08147583.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392]
gi|325160681|gb|EGC72802.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392]
Length = 175
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I+ M + M + + GL+APQV + R+ + EGD + +V
Sbjct: 34 IRKIVDDMFDTMYQEEGIGLAAPQVDILQRIITIDI--------EGDKQN-------QLV 78
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE IL + + EGC S+ +A VPR KV + LD GK + A+G A
Sbjct: 79 LINPE--ILASEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRHGKEFTLDADGLLAIC 136
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHL+G+LF D + P
Sbjct: 137 IQHEIDHLNGILFVDYLSP 155
>gi|167763509|ref|ZP_02435636.1| hypothetical protein BACSTE_01883 [Bacteroides stercoris ATCC
43183]
gi|167698803|gb|EDS15382.1| peptide deformylase [Bacteroides stercoris ATCC 43183]
Length = 184
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M D GL+APQ+GLP+R+ +V E + E +K + A H+
Sbjct: 27 LKELIQNMFETMDHADGVGLAAPQIGLPIRVVVVDLDVLSEDYPEYKGFRKAYINA--HI 84
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+ ++ E +V+ EGC SL + V R K+++ LDE EG+ AR
Sbjct: 85 LEVSGE--------EVSMEEGCLSLPGIHESVKRGNKIRVKYLDEDLVEHDEIVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHLDG +F D + P
Sbjct: 137 VMQHEFDHLDGKMFIDHLSP 156
>gi|218442239|ref|YP_002380568.1| peptide deformylase [Cyanothece sp. PCC 7424]
gi|218174967|gb|ACK73700.1| peptide deformylase [Cyanothece sp. PCC 7424]
Length = 176
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 61/120 (50%), Gaps = 11/120 (9%)
Query: 19 GLSAPQVGLPLRLFIVAF-PDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
G++APQV RLFIVA P P + EM P INP + I +KV
Sbjct: 48 GIAAPQVSQSYRLFIVASRPSPRYPNAP------EMNPTP---MINPRI-ISHSPEKVKG 97
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ L+ VPRY + + LD G + ARI QHE+DHLDG+LF D +
Sbjct: 98 WEGCLSVPGLRGLVPRYHTITVEYLDRYGNLQRQELTDFVARIFQHELDHLDGILFVDRL 157
>gi|28868804|ref|NP_791423.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213969590|ref|ZP_03397726.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
gi|301383364|ref|ZP_07231782.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13]
gi|302058804|ref|ZP_07250345.1| peptide deformylase [Pseudomonas syringae pv. tomato K40]
gi|302134493|ref|ZP_07260483.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|32363152|sp|Q886I1.1|DEF2_PSESM RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|28852043|gb|AAO55118.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213925686|gb|EEB59245.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
Length = 179
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ L+L I F E + + +A P +
Sbjct: 30 LETLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSE--------RYPQAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L + EGC S+ L+ V RY+ ++ G D G+P A G+ AR+
Sbjct: 82 LLNPLITPL-HPGVEEGWEGCLSVPGLRGMVDRYQSIRYEGFDPDGQPIERIAHGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|310642740|ref|YP_003947498.1| peptide deformylase [Paenibacillus polymyxa SC2]
gi|309247690|gb|ADO57257.1| Peptide deformylase [Paenibacillus polymyxa SC2]
Length = 159
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 65/128 (50%), Gaps = 18/128 (14%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M + GL+APQVG+ RL +V D G IK INPE
Sbjct: 29 MADTMYEAEGVGLAAPQVGILKRLIVVDAGD-----EHGLIK-----------MINPE-- 70
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
I+ + + EGC S+ L V R KV + GL+ GK + TA G +R QHE+DH
Sbjct: 71 IVAEEGEQLGPEGCLSIPGLNGDVRRAEKVTVKGLNREGKAITVTATGLLSRAFQHEIDH 130
Query: 128 LDGLLFTD 135
L+G+LFTD
Sbjct: 131 LNGVLFTD 138
>gi|116073817|ref|ZP_01471079.1| peptide deformylase [Synechococcus sp. RS9916]
gi|116069122|gb|EAU74874.1| peptide deformylase [Synechococcus sp. RS9916]
Length = 201
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 61/120 (50%), Gaps = 14/120 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ +L ++ E + P +V INPE+ T
Sbjct: 72 IGLAAPQVGVHKQLLVIDL-------------DLETPSSPPLVLINPEITTASATVD-TY 117
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + V R +QL+ DE G+P + A+G AR IQHEMDHL G+LF D +
Sbjct: 118 EEGCLSIPGVYLDVVRPTAIQLSYRDEMGRPKTMKADGLMARCIQHEMDHLKGVLFVDRV 177
>gi|398902204|ref|ZP_10650871.1| peptide deformylase [Pseudomonas sp. GM50]
gi|398178905|gb|EJM66539.1| peptide deformylase [Pseudomonas sp. GM50]
Length = 179
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G D G+P A G+ AR++QH
Sbjct: 85 PLITPLSPTLE-EGFEGCLSVPGLRGAVDRYQQIRYEGFDPKGEPIVRIASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|325923638|ref|ZP_08185267.1| peptide deformylase [Xanthomonas gardneri ATCC 19865]
gi|325545882|gb|EGD17107.1| peptide deformylase [Xanthomonas gardneri ATCC 19865]
Length = 171
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 11/150 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M M GL+APQ+ + L+L + F E + E A P
Sbjct: 28 LRTLVADMFETMDDARGVGLAAPQIAVDLQLMVFGF--------EASERYPEAPAVPRTA 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
N +++ L ++ EGC S+ L+A +PRYR ++ G G P AEG+ AR+
Sbjct: 80 LANAQIEPLS-EEMENGWEGCLSIPGLRAVIPRYRFIRYRGFAPDGSPIEREAEGFHARV 138
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDI 150
+QHE DHL G L+ + ++ + ++D+
Sbjct: 139 VQHEYDHLVGRLYPSRI--ENFDTFGFEDV 166
>gi|182440102|ref|YP_001827821.1| polypeptide deformylase [Streptomyces griseus subsp. griseus NBRC
13350]
gi|326780771|ref|ZP_08240036.1| peptide deformylase [Streptomyces griseus XylebKG-1]
gi|178468618|dbj|BAG23138.1| putative polypeptide deformylase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326661104|gb|EGE45950.1| peptide deformylase [Streptomyces griseus XylebKG-1]
Length = 181
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 14/119 (11%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+A Q+G+PL++F+ PD ++ G + +NPE+ D V
Sbjct: 56 GLAANQIGVPLKVFVYDCPDDDDVRHLGHV-------------VNPELVEADGL-TVRGP 101
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC SL L+A R+ + GL TG+P GW AR +QHE DHL+G ++TD +
Sbjct: 102 EGCLSLPGLEAGTDRFDHAVVEGLTMTGEPVRIAGTGWFARCLQHECDHLEGTVYTDRL 160
>gi|427417991|ref|ZP_18908174.1| peptide deformylase [Leptolyngbya sp. PCC 7375]
gi|425760704|gb|EKV01557.1| peptide deformylase [Leptolyngbya sp. PCC 7375]
Length = 185
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 14/131 (10%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
QM M D GL+APQVG+ ++ +V DPEE+ A ++ INP++
Sbjct: 45 QMLQTMYSEDGIGLAAPQVGIHKQILVVDT-DPEEA------------ANKPLILINPKI 91
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
+ K+ EGC S+ + V R ++++ DE G+P A+ AR+IQHEMD
Sbjct: 92 -TRNSKEMACGQEGCLSIPGVFLDVIRPAAIEVSYKDENGRPQKIKADDLLARVIQHEMD 150
Query: 127 HLDGLLFTDSM 137
HL+G++F D +
Sbjct: 151 HLNGVMFVDRV 161
>gi|256831860|ref|YP_003160587.1| Peptide deformylase [Jonesia denitrificans DSM 20603]
gi|256685391|gb|ACV08284.1| Peptide deformylase [Jonesia denitrificans DSM 20603]
Length = 245
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 5 ILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINP 64
I M M GL+APQVG+ L + ++ P + D E AFP V +NP
Sbjct: 79 IDAMNTTMVVAPGVGLAAPQVGVSLAVAVMRDPGAAD-----DADPRERVAFPMRVLVNP 133
Query: 65 EMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHE 124
+ + +KV+ EGC S+ QA V R+R+V++ G DETG P GW ARI QHE
Sbjct: 134 VYEPVG-DEKVSFFEGCLSVPGYQAVVARWRRVRVMGWDETGAPVDEVLTGWPARIAQHE 192
Query: 125 MDHLDGLLFTDSMLPKSL 142
+DHL G+L+ D +SL
Sbjct: 193 IDHLRGVLYVDRAHLRSL 210
>gi|398857791|ref|ZP_10613488.1| peptide deformylase [Pseudomonas sp. GM79]
gi|398240349|gb|EJN26032.1| peptide deformylase [Pseudomonas sp. GM79]
Length = 179
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G D G+P A G+ AR++QH
Sbjct: 85 PLITPLSPTLE-EGFEGCLSVPGLRGAVDRYQQIRYEGFDPKGEPIVRIASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|426411135|ref|YP_007031234.1| peptide deformylase [Pseudomonas sp. UW4]
gi|426269352|gb|AFY21429.1| peptide deformylase [Pseudomonas sp. UW4]
Length = 179
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G+D G+P A G+ AR++QH
Sbjct: 85 PLITPLSPIME-EGFEGCLSVPGLRGAVQRYQQIRYEGVDPKGEPIVRVASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|419802860|ref|ZP_14328040.1| peptide deformylase [Haemophilus parainfluenzae HK262]
gi|419845517|ref|ZP_14368784.1| peptide deformylase [Haemophilus parainfluenzae HK2019]
gi|385189100|gb|EIF36569.1| peptide deformylase [Haemophilus parainfluenzae HK262]
gi|386415385|gb|EIJ29917.1| peptide deformylase [Haemophilus parainfluenzae HK2019]
Length = 169
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I+ M + M + + GL+APQV + R+ + EGD + +V
Sbjct: 28 IRKIVDDMFDTMYQEEGIGLAAPQVDILQRIITIDI--------EGDKQN-------QLV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE IL + + EGC S+ +A VPR KV + LD GK + A+G A
Sbjct: 73 LINPE--ILASEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRHGKEFTLDADGLLAIC 130
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHL+G+LF D + P
Sbjct: 131 IQHEIDHLNGILFVDYLSP 149
>gi|422297612|ref|ZP_16385244.1| polypeptide deformylase [Pseudomonas avellanae BPIC 631]
gi|422654372|ref|ZP_16717116.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330967399|gb|EGH67659.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|407990917|gb|EKG32894.1| polypeptide deformylase [Pseudomonas avellanae BPIC 631]
Length = 179
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ L+L I F E + + +A P +
Sbjct: 30 LETLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSE--------RYPQAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L + EGC S+ L+ V RY+ ++ G D G+P A G+ AR+
Sbjct: 82 LLNPLITPL-HPGVEEGWEGCLSVPGLRGMVDRYQSIRYEGFDPDGQPIERIAHGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|57234458|ref|YP_181493.1| peptide deformylase [Dehalococcoides ethenogenes 195]
gi|123759709|sp|Q3Z8F6.1|DEF_DEHE1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|57224906|gb|AAW39963.1| peptide deformylase [Dehalococcoides ethenogenes 195]
Length = 167
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 18/137 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M MK D GL+APQVG+ LRL + PD +E+ V
Sbjct: 28 IQTLIDDMIETMKSADGAGLAAPQVGVSLRLIVFREPDAKEA----------------TV 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE+ + + +VT EGC S+ ++ R V GLD GK G A++
Sbjct: 72 LINPEIVKKEGQRQVT--EGCLSIPGYFGELTRAETVTAKGLDRHGKAFRIKGTGVVAQL 129
Query: 121 IQHEMDHLDGLLFTDSM 137
++HE +HLDG+L+ D +
Sbjct: 130 LEHETEHLDGILYIDHL 146
>gi|398876979|ref|ZP_10632129.1| peptide deformylase [Pseudomonas sp. GM67]
gi|398886047|ref|ZP_10640940.1| peptide deformylase [Pseudomonas sp. GM60]
gi|398190862|gb|EJM78072.1| peptide deformylase [Pseudomonas sp. GM60]
gi|398203437|gb|EJM90259.1| peptide deformylase [Pseudomonas sp. GM67]
Length = 179
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G D G+P A G+ AR++QH
Sbjct: 85 PLITPLSPVME-EGFEGCLSVPGLRGAVSRYQQIRYEGFDPKGEPIVRIASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|16078635|ref|NP_389454.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168]
gi|221309447|ref|ZP_03591294.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168]
gi|221313772|ref|ZP_03595577.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. NCIB
3610]
gi|221318696|ref|ZP_03599990.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. JH642]
gi|221322967|ref|ZP_03604261.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. SMY]
gi|402775817|ref|YP_006629761.1| polypeptide deformylase [Bacillus subtilis QB928]
gi|418033281|ref|ZP_12671758.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. SC-8]
gi|452914141|ref|ZP_21962768.1| peptide deformylase [Bacillus subtilis MB73/2]
gi|2499922|sp|P94462.1|DEF1_BACSU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|1772499|emb|CAA71349.1| polypeptide deformylase [Bacillus subtilis subsp. subtilis str.
168]
gi|2337801|emb|CAA74262.1| putative Def protein [Bacillus subtilis subsp. subtilis str. 168]
gi|2633944|emb|CAB13445.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168]
gi|351469429|gb|EHA29605.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. SC-8]
gi|402480999|gb|AFQ57508.1| Polypeptide deformylase [Bacillus subtilis QB928]
gi|407958979|dbj|BAM52219.1| peptide deformylase [Synechocystis sp. PCC 6803]
gi|407964556|dbj|BAM57795.1| peptide deformylase [Bacillus subtilis BEST7003]
gi|452116561|gb|EME06956.1| peptide deformylase [Bacillus subtilis MB73/2]
Length = 160
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 18/130 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M D GL+APQ+G+ R +V D D + ++ +NPE
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVEIGD--------DRGRIDL--------VNPE-- 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
IL+ + T +EGC S ++ V R V++ + GKP A G+ AR +QHEMDH
Sbjct: 77 ILEKSGEQTGIEGCLSFPNVYGDVTRADYVKVRAFNRQGKPFILEARGFLARAVQHEMDH 136
Query: 128 LDGLLFTDSM 137
LDG+LFT +
Sbjct: 137 LDGVLFTSKI 146
>gi|345429246|ref|YP_004822364.1| peptide deformylase [Haemophilus parainfluenzae T3T1]
gi|301155307|emb|CBW14773.1| peptide deformylase [Haemophilus parainfluenzae T3T1]
Length = 169
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I+ M + M + + GL+APQV + R+ + EGD + +V
Sbjct: 28 IRKIVDDMFDTMYQEEGIGLAAPQVDILQRIITIDI--------EGDKQN-------QLV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE IL + + EGC S+ +A VPR KV + LD GK + A+G A
Sbjct: 73 LINPE--ILASEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRHGKEFTLDADGLLAIC 130
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHL+G+LF D + P
Sbjct: 131 IQHEIDHLNGILFVDYLSP 149
>gi|167035061|ref|YP_001670292.1| peptide deformylase [Pseudomonas putida GB-1]
gi|166861549|gb|ABY99956.1| peptide deformylase [Pseudomonas putida GB-1]
Length = 178
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M+ GL+APQ+G+ L+L I F E + + +A P +
Sbjct: 30 LQQLIDDMFETMRHVGGVGLAAPQIGIDLQLVIFGFERSE--------RYPDAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + + + EGC S+ L+ VPR++ + G+D G P + A+G+ AR+
Sbjct: 82 LLNPVITPTSSEVE-DGWEGCLSVPGLRGVVPRFKHICYEGIDPQGNPINRFADGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|406871416|gb|EKD22242.1| hypothetical protein ACD_87C00089G0002 [uncultured bacterium]
Length = 186
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 8/127 (6%)
Query: 9 KNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKI 68
K ++R + GL+APQ+G+ R I+AF + F + DIK+ + + F + INP +
Sbjct: 46 KAFLEREEAVGLAAPQIGIGKR--IIAFRT--KGFDDKDIKR-KKEEFE--ILINPRITQ 98
Query: 69 LDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHL 128
L ++V EGC S L+ ++ RY ++++ LD G+ S +AAR++QHEMDHL
Sbjct: 99 L-RGEQVVGEEGCLSCPELRVEISRYPEIKVRALDMEGRKVSKRYLDFAARVVQHEMDHL 157
Query: 129 DGLLFTD 135
DG L D
Sbjct: 158 DGKLIVD 164
>gi|237798881|ref|ZP_04587342.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331021735|gb|EGI01792.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 179
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ L+L I F E + E +A P +
Sbjct: 30 LETLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSE--------RYPEAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L + EGC S+ L+ V RY+ ++ G D G P A G+ AR+
Sbjct: 82 LLNPLITPLG-PNMEEGWEGCLSVPGLRGMVDRYQSIRYEGFDPDGLPIERVAHGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|422658716|ref|ZP_16721148.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|331017341|gb|EGH97397.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M302278]
Length = 179
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ L+L I F E + + +A P +
Sbjct: 30 LETLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSE--------RYPQAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L + EGC S+ L+ V RY+ ++ G D G+P A G+ AR+
Sbjct: 82 LLNPLITPL-HPGVEEGWEGCLSVPGLRGMVDRYQSIRYEGFDPDGQPIERIAHGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|169837129|ref|ZP_02870317.1| peptide deformylase [candidate division TM7 single-cell isolate
TM7a]
Length = 191
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 17/124 (13%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV-WINPEMKILDYKDKVT- 76
L+A QV R+ IV +F+ ++ H INPE I+ Y+ ++T
Sbjct: 53 ALAAVQVDKLERIVIVR-------------SEFDNKSNNHFTALINPE--IIKYEGEITY 97
Query: 77 ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
EGC S+ + KVPRY KV++ L+E GK AEG+ AR++QHE+DH +G++F D
Sbjct: 98 DYEGCLSVSKVYGKVPRYNKVRVKALNEDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDH 157
Query: 137 MLPK 140
+ K
Sbjct: 158 IKNK 161
>gi|163855075|ref|YP_001629373.1| peptide deformylase [Bordetella petrii DSM 12804]
gi|163258803|emb|CAP41102.1| peptide deformylase [Bordetella petrii]
Length = 177
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M M GL+APQ+G+ L+L I F E + + + P V N
Sbjct: 31 LVADMFETMVHAKGVGLAAPQIGVDLQLVIFGF--------EHNERYPDAPPVPLTVLCN 82
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + ++ EGC S+ L+ VPRYR ++ G D G+P AEG+ AR++QH
Sbjct: 83 PVITPRS-DEREDGWEGCLSVPGLRGLVPRYRHIRYRGFDPHGQPIEREAEGFHARVVQH 141
Query: 124 EMDHLDGLLFTDSM 137
E DHL G L+ +
Sbjct: 142 ECDHLIGRLYPSRI 155
>gi|422637479|ref|ZP_16700911.1| peptide deformylase [Pseudomonas syringae Cit 7]
gi|440741984|ref|ZP_20921314.1| peptide deformylase [Pseudomonas syringae BRIP39023]
gi|330949875|gb|EGH50135.1| peptide deformylase [Pseudomonas syringae Cit 7]
gi|440378070|gb|ELQ14700.1| peptide deformylase [Pseudomonas syringae BRIP39023]
Length = 179
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M M GL+APQ+G+ L+L I F E + + + +A P +
Sbjct: 30 LDTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGF--------ERNERYPQAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L + EGC S+ L+ V RY+ ++ G D G+P A G+ AR+
Sbjct: 82 LINPLITPLSPTLE-EGWEGCLSVPGLRGMVDRYQSIRYEGFDPQGQPIVRVAHGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|83589748|ref|YP_429757.1| peptide deformylase [Moorella thermoacetica ATCC 39073]
gi|123766806|sp|Q2RK25.1|DEF_MOOTA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|83572662|gb|ABC19214.1| peptide deformylase [Moorella thermoacetica ATCC 39073]
Length = 155
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 20/121 (16%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQ+G+ R+ +V D E +E INPE+ I ++V A
Sbjct: 45 VGLAAPQIGVLKRVIVV---DVGEGLTE---------------LINPEV-IAASGEEVGA 85
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ Q +VPR V + GLD G+ AEG AR +QHE+DHLDG+LF D +
Sbjct: 86 -EGCLSIPGAQGEVPRAAVVTVRGLDRHGRVREIRAEGLYARALQHEIDHLDGILFIDKV 144
Query: 138 L 138
+
Sbjct: 145 V 145
>gi|77460570|ref|YP_350077.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
gi|398973690|ref|ZP_10684532.1| peptide deformylase [Pseudomonas sp. GM25]
gi|77384573|gb|ABA76086.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
gi|398142642|gb|EJM31535.1| peptide deformylase [Pseudomonas sp. GM25]
Length = 179
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G+D G+P A G+ AR++QH
Sbjct: 85 PLITPLSPLME-EGFEGCLSVPGLRGAVDRYQQIRYEGVDPKGEPIVRVASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|357416225|ref|YP_004929245.1| peptide deformylase [Pseudoxanthomonas spadix BD-a59]
gi|355333803|gb|AER55204.1| peptide deformylase [Pseudoxanthomonas spadix BD-a59]
Length = 176
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 13/156 (8%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M M+ + GL+APQV + R+ + F + + + + A P
Sbjct: 28 LRDLVDDMFQTMELANGVGLAAPQVAVGKRVIVFGF--------DHNTRYPDAPAVPRTA 79
Query: 61 WINPEMKILDYKDKVT-ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
NP ++ L D + EGC S+ L+A +PR+R+++ +G + G+ AEG+ AR
Sbjct: 80 LFNPVVEPL--SDALEDGWEGCLSIPGLRAVIPRFRRIRYSGWNAQGQRVERVAEGFHAR 137
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
++QHE+DHLDG+L+ + + + D+ G
Sbjct: 138 VVQHEVDHLDGILYPSRI--RDFSTFGFTDVLFAEG 171
>gi|338813381|ref|ZP_08625510.1| peptide deformylase [Acetonema longum DSM 6540]
gi|337274740|gb|EGO63248.1| peptide deformylase [Acetonema longum DSM 6540]
Length = 152
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 63/129 (48%), Gaps = 20/129 (15%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
M M + GL+APQVG+ LR+ ++ D E E INPE
Sbjct: 34 NMAQTMYGAEGVGLAAPQVGILLRIVVI---DAGEGLVE---------------LINPE- 74
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
I++ A EGC S+ + V RY V + GL+ +GK A G AR +QHE+D
Sbjct: 75 -IVESDGTQVASEGCLSIPGVYGDVERYADVTVEGLNRSGKKIRIAANGLLARALQHEID 133
Query: 127 HLDGLLFTD 135
HL+G+LF +
Sbjct: 134 HLNGILFIE 142
>gi|323489535|ref|ZP_08094762.1| peptide deformylase [Planococcus donghaensis MPA1U2]
gi|323396666|gb|EGA89485.1| peptide deformylase [Planococcus donghaensis MPA1U2]
Length = 170
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 18/137 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +++ M M D G++APQVG +R+ IV F + +E
Sbjct: 28 LSVLLDDMHETMVESDGVGIAAPQVGEAVRVAIVDFREGQEPIE---------------- 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NPE+ + + + T +EGC S + +V RY +++ + G AEG+ AR
Sbjct: 72 MVNPELVLFEGAE--TDIEGCLSFPGIFGEVERYDHIKIKAQERDGSWYELEAEGYEARA 129
Query: 121 IQHEMDHLDGLLFTDSM 137
I HEMDHLDG+LFT +
Sbjct: 130 ILHEMDHLDGVLFTSKI 146
>gi|373857266|ref|ZP_09600008.1| peptide deformylase [Bacillus sp. 1NLA3E]
gi|372452916|gb|EHP26385.1| peptide deformylase [Bacillus sp. 1NLA3E]
Length = 161
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 18/134 (13%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
I+ M + M FD GL+APQ+GL R+ IV D ++ E+ IN
Sbjct: 31 ILNDMYDTMIEFDGVGLAAPQIGLKQRIAIVDIDD--------ELGTVEL--------IN 74
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE +++ + T EGC S L +V R +++ + GK AEG+ AR IQH
Sbjct: 75 PE--VVEASGEQTGPEGCLSFPGLYGEVTRPNFIKVAAQNRKGKAFVLEAEGFLARAIQH 132
Query: 124 EMDHLDGLLFTDSM 137
E+DHL+G+LFT +
Sbjct: 133 EIDHLNGILFTSKV 146
>gi|78044307|ref|YP_360316.1| peptide deformylase [Carboxydothermus hydrogenoformans Z-2901]
gi|123743168|sp|Q3AC18.1|DEF_CARHZ RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|77996422|gb|ABB15321.1| peptide deformylase [Carboxydothermus hydrogenoformans Z-2901]
Length = 152
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 20/129 (15%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
M + M ++ GL+APQ+G+ R +V EG I+ INPE
Sbjct: 34 NMADTMYAYNGVGLAAPQIGVSKRAIVV-------DVGEGLIE-----------LINPE- 74
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
I++ + +EGC S+ +Q +V R +KV + GL+ G+ AEG AR QHE+D
Sbjct: 75 -IIEVSGEEKDIEGCLSVPGVQGEVVRAKKVTVKGLNRYGEEIVIPAEGLLARAFQHEID 133
Query: 127 HLDGLLFTD 135
HL+G+LF +
Sbjct: 134 HLNGILFVE 142
>gi|289663684|ref|ZP_06485265.1| peptide deformylase [Xanthomonas campestris pv. vasculorum NCPPB
702]
Length = 171
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 11/150 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ M M GL+APQ+ + L+L + F D E + E A P
Sbjct: 28 LHALVADMFETMDAARGVGLAAPQIAVDLQLMVFGF-DASERYPEA-------PAVPRTA 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
N +++ L + EGC S+ L+A +PRYR ++ G+ G P AEG+ AR+
Sbjct: 80 LANAQIEPLS-GEMENGWEGCLSIPGLRAVIPRYRYIRYRGVAPDGSPIEREAEGFHARV 138
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDI 150
+QHE DHL G L+ + ++ + ++D+
Sbjct: 139 VQHEYDHLVGRLYPSRI--ENFDTFGFEDV 166
>gi|283778512|ref|YP_003369267.1| peptide deformylase [Pirellula staleyi DSM 6068]
gi|283436965|gb|ADB15407.1| peptide deformylase [Pirellula staleyi DSM 6068]
Length = 222
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 17/142 (11%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ QM ++M GL+A QV LPLRLF++ + E +V
Sbjct: 55 LRAMVAQMFDLMYEAKGIGLAANQVDLPLRLFVINLTAEKGKGEE-------------LV 101
Query: 61 WINPEMKILDY-KDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+INP +L + K A EGC SL + +V R + VQ+ + G+ S G AR
Sbjct: 102 FINP---VLSHPKGSAEAEEGCLSLPGVYGQVVRPKTVQVNAYNLQGQEISAEVGGLLAR 158
Query: 120 IIQHEMDHLDGLLFTDSMLPKS 141
IQHE DHLDG++F D M S
Sbjct: 159 CIQHENDHLDGVMFPDRMSESS 180
>gi|430759005|ref|YP_007209726.1| Peptide deformylase 1 [Bacillus subtilis subsp. subtilis str. BSP1]
gi|430023525|gb|AGA24131.1| Peptide deformylase 1 [Bacillus subtilis subsp. subtilis str. BSP1]
Length = 165
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 18/130 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M D GL+APQ+G+ R +V D D + ++ +NPE
Sbjct: 40 MYDTMLEMDGVGLAAPQIGILKRAAVVDIGD--------DRGRIDL--------VNPE-- 81
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
IL+ + T +EGC S ++ V R V++ + GKP A G+ AR +QHEMDH
Sbjct: 82 ILEKSGEQTGIEGCLSFPNVYGDVTRADYVKVRAFNRQGKPFILEARGFLARAVQHEMDH 141
Query: 128 LDGLLFTDSM 137
LDG+LFT +
Sbjct: 142 LDGVLFTSKI 151
>gi|434407994|ref|YP_007150879.1| peptide deformylase [Cylindrospermum stagnale PCC 7417]
gi|428262249|gb|AFZ28199.1| peptide deformylase [Cylindrospermum stagnale PCC 7417]
Length = 177
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 12/151 (7%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
II + + + + G++APQV RLFI+A P + + + P + IN
Sbjct: 33 IIDNLIATVSQANGVGIAAPQVAESYRLFILA-SHPNARYPYAPLME------PTAI-IN 84
Query: 64 PEMKILDYKDKVT-ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
P KI+ Y D+V EGC S+ ++ VPRY+ +++ D G+ + T + ARI Q
Sbjct: 85 P--KIIAYSDEVVKGWEGCLSVPGIRGLVPRYQTIEVEYTDRNGELKTQTLTDFVARIFQ 142
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQ 153
HE DHLDG++F D L +L+ + Q+ ++
Sbjct: 143 HEFDHLDGIVFVDR-LESTLDMLTEQEFQMR 172
>gi|88802639|ref|ZP_01118166.1| peptide deformylase [Polaribacter irgensii 23-P]
gi|88781497|gb|EAR12675.1| peptide deformylase [Polaribacter irgensii 23-P]
Length = 196
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 6/162 (3%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPE-ESFSEGDIKKFEMQAFPHMVW 61
+I M+ M GL+APQ+G +RLF++ A P E E SE D + ++ F + V+
Sbjct: 30 LIHNMRETMYNASGVGLAAPQIGKAIRLFLIDASPFAEDEELSEKD--RNVLKTF-NKVF 86
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
IN ++ I + ++ EGC S+ ++ V R +++ DE K T EG AAR+
Sbjct: 87 INAQI-IAEEGEEWVFNEGCLSIPDVREDVSRQPVIKIKYQDENFKKHFETLEGLAARVF 145
Query: 122 QHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
QHE DH++G+LFTD + + + N+ G + Y M
Sbjct: 146 QHEYDHIEGILFTDKLSTLKKRIIKKKLENISKGKIAADYRM 187
>gi|227488838|ref|ZP_03919154.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867]
gi|227542166|ref|ZP_03972215.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866]
gi|227091260|gb|EEI26572.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867]
gi|227181995|gb|EEI62967.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866]
Length = 177
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 24/140 (17%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV------AFPDPEESFSEGDIKKFEMQA 55
K ++ M M GL+A QVG+ R+F+ + P+P+ + G A
Sbjct: 28 KTLVSDMLETMDSAGGVGLAANQVGVLQRVFVYDCPVDDSDPNPDREYKRG--------A 79
Query: 56 FPHMVW--INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTA 113
+ VW + EM++ EGC S+ + A RY V +TGLDE G + A
Sbjct: 80 IINPVWEPVGEEMQL--------GQEGCLSIPDVYADTERYMNVHVTGLDENGDNVDFEA 131
Query: 114 EGWAARIIQHEMDHLDGLLF 133
G AR IQHE DHLDG+LF
Sbjct: 132 TGLLARCIQHETDHLDGVLF 151
>gi|218778408|ref|YP_002429726.1| peptide deformylase [Desulfatibacillum alkenivorans AK-01]
gi|254767578|sp|B8FHH0.1|DEF_DESAA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|218759792|gb|ACL02258.1| peptide deformylase [Desulfatibacillum alkenivorans AK-01]
Length = 172
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 69/128 (53%), Gaps = 16/128 (12%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+A QVG+ + + + E S S G V INP KI+ + KVT+
Sbjct: 45 LGLAAVQVGVDKAMLVYDVAEDENSESTG-----------LKVLINP--KIVHTEGKVTS 91
Query: 78 L-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD- 135
EGC S+ +A VPR+ V + G+D GKP AEG A ++QHE+DHL+G LF D
Sbjct: 92 ENEGCLSVPEFRADVPRFACVTVEGVDHEGKPVKIDAEGLLAIVLQHEIDHLEGKLFIDR 151
Query: 136 -SMLPKSL 142
S L +S+
Sbjct: 152 ISSLKRSM 159
>gi|398940215|ref|ZP_10669107.1| peptide deformylase [Pseudomonas sp. GM41(2012)]
gi|398163150|gb|EJM51321.1| peptide deformylase [Pseudomonas sp. GM41(2012)]
Length = 179
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY+ ++ G D G+P A G+ AR++QH
Sbjct: 85 PLITPLSPTLE-EGFEGCLSVPGLRGAVDRYQHIRYEGFDPKGQPIVRIASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|225012717|ref|ZP_03703152.1| peptide deformylase [Flavobacteria bacterium MS024-2A]
gi|225003250|gb|EEG41225.1| peptide deformylase [Flavobacteria bacterium MS024-2A]
Length = 195
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 8/163 (4%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGD-IKKFEMQAFPHM--V 60
+I M M + GL+APQ+GL +RLF++ FSE D + + E + V
Sbjct: 30 LIENMWETMYASNGVGLAAPQIGLSIRLFVIDTA----PFSEDDELDELEAETLKSFKKV 85
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INP + I + EGC S+ ++ V R+ ++++ D+ K G AAR+
Sbjct: 86 FINP-VVIEEDGSLWEFNEGCLSIPDVREDVSRHERIKIHYFDQQFKEQELVLTGLAARV 144
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
+QHE DH++G+LFTD + P + + ++ G +++ Y M
Sbjct: 145 VQHEYDHIEGVLFTDHLTPLKRRLLKNRLNSISKGTIQVDYPM 187
>gi|319951883|ref|YP_004163150.1| peptide deformylase [Cellulophaga algicola DSM 14237]
gi|319420543|gb|ADV47652.1| peptide deformylase [Cellulophaga algicola DSM 14237]
Length = 196
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 6/165 (3%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFP--DPEESFSEGDIKKFEMQAFPH 58
++ ++ M M GL+APQ+GLP+RLF++ +E S D K + F
Sbjct: 27 LETLVENMWETMYNASGVGLAAPQIGLPIRLFVIDTTPFSEDEDLSPEDQKA--LDGF-K 83
Query: 59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
V++N +++ + ++ EGC S+ ++ V R +++T LDE S + G A
Sbjct: 84 KVFVNAKIE-EETGEEWNFNEGCLSIPDVREDVNRKETIKITYLDENFNEKSESYGGLLA 142
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
R+IQHE DH++G+LFTD + + + N+ G + Y M
Sbjct: 143 RVIQHEYDHIEGILFTDKLSSLKKRLLKGKLSNISKGKISADYRM 187
>gi|255529965|ref|YP_003090337.1| peptide deformylase [Pedobacter heparinus DSM 2366]
gi|255342949|gb|ACU02275.1| peptide deformylase [Pedobacter heparinus DSM 2366]
Length = 186
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M GL+APQVGLP+RLFIV + EGD KF+ V
Sbjct: 27 LKQLISNMFETMYNAHGVGLAAPQVGLPIRLFIV-----DTGADEGDKNKFKK------V 75
Query: 61 WINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+IN E IL+ + A EGC S+ ++ V R +++ DE + G AR
Sbjct: 76 FINAE--ILEETGEPWAFNEGCLSIPDIREDVMRKPNIRIKYYDEHWELHEEEVSGMPAR 133
Query: 120 IIQHEMDHLDGLLFTDSM 137
+IQHE DH++G LFTD++
Sbjct: 134 VIQHEYDHIEGKLFTDTL 151
>gi|398998626|ref|ZP_10701397.1| peptide deformylase [Pseudomonas sp. GM21]
gi|398119920|gb|EJM09593.1| peptide deformylase [Pseudomonas sp. GM21]
Length = 179
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G D G+P A G+ AR++QH
Sbjct: 85 PLITPLRPTLE-EGFEGCLSVPGLRGAVERYQQIRYEGFDPKGQPVVRIASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|433455780|ref|ZP_20413850.1| peptide deformylase [Arthrobacter crystallopoietes BAB-32]
gi|432197138|gb|ELK53540.1| peptide deformylase [Arthrobacter crystallopoietes BAB-32]
Length = 183
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 8/144 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS-EGDIKKF-EMQAFPH 58
+ +++ M++VM GL+APQ+ +PLR+ ++ E+ + D+ + E
Sbjct: 22 LHALLVLMRHVMHAAPGVGLAAPQLAIPLRIAVL-----EDRYEVAADVAQTRERLPLDL 76
Query: 59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
+ INP + + + EGC S QA V R R+++L+ G P GW A
Sbjct: 77 LAVINPNYRPIG-GETAAFYEGCLSFTGYQAVVERPRQIELSYHCADGTPVVRRLSGWQA 135
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSL 142
RI QHE DHLDG ++ D L +SL
Sbjct: 136 RIAQHETDHLDGTIYIDKALTRSL 159
>gi|427387006|ref|ZP_18883062.1| peptide deformylase [Bacteroides oleiciplenus YIT 12058]
gi|425725909|gb|EKU88777.1| peptide deformylase [Bacteroides oleiciplenus YIT 12058]
Length = 186
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 70/139 (50%), Gaps = 5/139 (3%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF--EMQAFPHMVW 61
+I M ++ D GL+APQ+ LP++LFI+ D S + K F E +
Sbjct: 30 VIETMWQTLRHADGCGLAAPQINLPIKLFIMNSRDTYAYMSAKERKHFFAEEDCGIEETF 89
Query: 62 INPEMKILDYKDKV-TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
IN E I Y ++V TA EGC S+ L +V R V + D K + T G+ ARI
Sbjct: 90 INAE--ITAYSEEVWTAGEGCLSIPDLYEEVTRPWSVTIKYQDSEFKEQNRTYHGYTARI 147
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE +H G L+ D + P
Sbjct: 148 IQHEFEHTQGKLYIDRLSP 166
>gi|375105581|ref|ZP_09751842.1| peptide deformylase [Burkholderiales bacterium JOSHI_001]
gi|374666312|gb|EHR71097.1| peptide deformylase [Burkholderiales bacterium JOSHI_001]
Length = 180
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 76/137 (55%), Gaps = 8/137 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +++ + + M + GL+APQ+G+ L+L I F + + + + A P V
Sbjct: 29 LRALVVDLFDTMAAANGAGLAAPQIGVDLQLVIFGFENNNQRYPDA-------PAVPLTV 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP ++ LD ++ EGC S+ L+ +VPR+ +++ G D G+ AEG+ AR+
Sbjct: 82 LVNPTIEPLD-EEMEAGWEGCLSVPGLRGQVPRHARIRYHGFDAEGQRIDRIAEGFHARV 140
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHE DHL G L+ M
Sbjct: 141 VQHECDHLIGRLYPTRM 157
>gi|354594303|ref|ZP_09012342.1| peptide deformylase [Commensalibacter intestini A911]
gi|353671979|gb|EHD13679.1| peptide deformylase [Commensalibacter intestini A911]
Length = 178
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 75/137 (54%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ II M + M + GL+APQVG+PLR FI+ + EG+ +++ +
Sbjct: 36 IRKIIPVMFDTMYDANGIGLAAPQVGIPLRFFIMDL-----AKKEGEKEQY--------I 82
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NPE+ I + ++ EGC S+ ++V R K+++ +D GK A+ AR
Sbjct: 83 ILNPEI-IEESEECTEDREGCLSVPEQYSEVIRPEKIKVRYMDLDGKQQEMEADDLLARC 141
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHE DHLDG+LF D +
Sbjct: 142 IQHETDHLDGILFIDHI 158
>gi|71737618|ref|YP_273728.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|416015116|ref|ZP_11562776.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
gi|71558171|gb|AAZ37382.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|320325402|gb|EFW81467.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
Length = 179
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M M GL+APQ+G+ L+L I F E + + +A P +
Sbjct: 30 LNTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSE--------RYPQAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L + EGC S+ L+ V RY+ ++ G D G+P A G+ AR+
Sbjct: 82 LLNPLITPLSPSLE-EGWEGCLSVPGLRGMVNRYQSIRYEGFDPEGQPVERVAHGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|406994235|gb|EKE13257.1| hypothetical protein ACD_13C00051G0004 [uncultured bacterium]
Length = 177
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 15/139 (10%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQ+G LR+F+ + D E+ +I + E N + K L
Sbjct: 48 GLAAPQIGKNLRIFVAKYKDFEKVVINPEIVRVE----------NKSRSAKSRQSKKEIL 97
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
EGC SL + R K+ + LDE GK + T +G+ A+II HE+DHL+G+LF D +L
Sbjct: 98 EGCLSLPYYYGPLKRAAKITIKYLDEKGKTLTETFDGFHAQIIMHEIDHLEGILFIDHLL 157
Query: 139 PKS-----LECVCWQDINL 152
+ +E W+++ L
Sbjct: 158 SEGKPLYKVEGDEWEEVEL 176
>gi|330807956|ref|YP_004352418.1| peptide deformylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423695745|ref|ZP_17670235.1| peptide deformylase [Pseudomonas fluorescens Q8r1-96]
gi|327376064|gb|AEA67414.1| peptide deformylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|388008875|gb|EIK70126.1| peptide deformylase [Pseudomonas fluorescens Q8r1-96]
Length = 179
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + + EGC S+ L+ V RY+ ++ G D G+P A G+ AR++QH
Sbjct: 85 PLITPLGPQME-EGFEGCLSVPGLRGAVERYQDIRYEGFDPKGEPIVRYASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|378949241|ref|YP_005206729.1| peptide deformylase [Pseudomonas fluorescens F113]
gi|359759255|gb|AEV61334.1| Peptide deformylase [Pseudomonas fluorescens F113]
Length = 179
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + + EGC S+ L+ V RY+ ++ G D G+P A G+ AR++QH
Sbjct: 85 PLITPLGPQME-EGFEGCLSVPGLRGAVERYQDIRYEGFDPKGEPIVRYASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|386811558|ref|ZP_10098783.1| peptide deformylase [planctomycete KSU-1]
gi|386403828|dbj|GAB61664.1| peptide deformylase [planctomycete KSU-1]
Length = 170
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 17/135 (12%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
+M +M + + GL+APQVG +RLFI+ D +S E V+INP
Sbjct: 31 EMMELMCQANGVGLAAPQVGWSVRLFII---DVNDSRCEDK------------VFINP-- 73
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
I++ +++ EGC SL + +KV R ++++ + G+ AEG AAR QHE+D
Sbjct: 74 TIIEETGELSKEEGCLSLPGIMSKVIRAQRIKARAYNLKGQKIEIEAEGLAARAWQHEID 133
Query: 127 HLDGLLFTDSMLPKS 141
HL+G LF D + P +
Sbjct: 134 HLNGCLFIDKISPAN 148
>gi|453077083|ref|ZP_21979844.1| peptide deformylase [Rhodococcus triatomae BKS 15-14]
gi|452759947|gb|EME18291.1| peptide deformylase [Rhodococcus triatomae BKS 15-14]
Length = 197
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 12/139 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M + M + GL+A QVG+PLRLF+ PD + G ++ E+ IN
Sbjct: 31 LVGDMYDTMDAANGVGLAANQVGVPLRLFVYDCPDYDADPKNGTRRRGEV--------IN 82
Query: 64 PEMKILDYK----DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
P ++ + D EGC S+ Q R ++TG+D G+P S G+ AR
Sbjct: 83 PVLETSEIPETMPDPDDDEEGCLSVPGEQFPTGRANWAKVTGVDLDGEPVSIEGTGFFAR 142
Query: 120 IIQHEMDHLDGLLFTDSML 138
++QHE+ HLDG L+TD ++
Sbjct: 143 MLQHEVGHLDGFLYTDMLI 161
>gi|220912431|ref|YP_002487740.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
gi|219859309|gb|ACL39651.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
Length = 204
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 67/136 (49%), Gaps = 23/136 (16%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M M+ D GL+APQ+G+ R+F EG I IN
Sbjct: 31 LVADMTETMEDVDGAGLAAPQIGVSKRVFTYRI-----DGVEGHI-------------IN 72
Query: 64 PEMKILDYKD--KVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
P +L+ D + +EGC S+ L V R+R ++TG+D G P S EG AR
Sbjct: 73 P---VLENSDDYQPDHVEGCLSIPGLGFPVRRFRATRVTGVDMHGNPVSLEGEGMLARCF 129
Query: 122 QHEMDHLDGLLFTDSM 137
QHE DHLDG+L+TD +
Sbjct: 130 QHENDHLDGVLYTDRL 145
>gi|33864860|ref|NP_896419.1| peptide deformylase [Synechococcus sp. WH 8102]
gi|39930836|sp|Q7U9D4.1|DEF_SYNPX RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|33632383|emb|CAE06839.1| putative formylmethionine deformylase [Synechococcus sp. WH 8102]
Length = 201
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 60/118 (50%), Gaps = 14/118 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ +L ++ E A P +V INPE+ T
Sbjct: 72 IGLAAPQVGIHQQLLVIDL-------------DLENAATPPLVLINPEISAASASID-TY 117
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+ + V R ++L+ DE G+P A+G AR IQHEMDHL+G+LF D
Sbjct: 118 EEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLMARCIQHEMDHLNGVLFVD 175
>gi|294624946|ref|ZP_06703599.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|294665783|ref|ZP_06731054.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|292600746|gb|EFF44830.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292604435|gb|EFF47815.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
Length = 171
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 11/150 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ M M GL+APQ+ + L+L + F D E + E A P
Sbjct: 28 LHTLVADMFETMDAARGVGLAAPQIAVDLQLMVFGF-DASERYPEA-------PAVPRTA 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
N +++ L ++ EGC S+ L+A +PRYR ++ G G P AEG+ AR+
Sbjct: 80 LANAQIEPLS-EEMENGWEGCLSIPGLRAVIPRYRFIRYRGFAPDGSPIERDAEGFHARV 138
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDI 150
+QHE DHL G L+ + ++ + ++D+
Sbjct: 139 VQHEYDHLVGRLYPSRI--ENFDTFGFEDV 166
>gi|398931056|ref|ZP_10664952.1| peptide deformylase [Pseudomonas sp. GM48]
gi|398164350|gb|EJM52489.1| peptide deformylase [Pseudomonas sp. GM48]
Length = 179
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G+D G+P A G+ AR++QH
Sbjct: 85 PLITPLSPILE-EGFEGCLSVPGLRGAVQRYQQIRYEGVDPKGEPIVRIASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|406905727|gb|EKD47110.1| hypothetical protein ACD_66C00219G0007 [uncultured bacterium]
Length = 154
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M MK D G++APQ+G +R +V + E ++INPE+
Sbjct: 37 MIETMKAEDGVGIAAPQIGQQIRAIVVTLENGPE------------------IYINPEIT 78
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
+ K EGC S+ L+ V RY+ + + LD G P + A A I QHE+DH
Sbjct: 79 KRSLR-KQKGEEGCLSVPELRGIVERYQSICIKALDRHGNPINLDASNLGAIIFQHEIDH 137
Query: 128 LDGLLFTD 135
LDG+LF D
Sbjct: 138 LDGILFID 145
>gi|375256533|ref|YP_005015700.1| peptide deformylase [Tannerella forsythia ATCC 43037]
gi|363408265|gb|AEW21951.1| peptide deformylase [Tannerella forsythia ATCC 43037]
Length = 185
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 11/138 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHM 59
+K +I M M D GL+APQ+G + L ++ P D K+
Sbjct: 27 LKKLIADMFETMYHADGVGLAAPQIGRSISLVVIDGTPVANNRIECKDFKR--------- 77
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V INPE+ I + ++ VT EGC S + KV R K+++ ++E +P EG+AAR
Sbjct: 78 VLINPEI-IEESRETVTFEEGCLSFPGVHEKVTRPEKIKVRYMNEHFEPQEENLEGFAAR 136
Query: 120 IIQHEMDHLDGLLFTDSM 137
I+ HE +HL G +F D++
Sbjct: 137 IVLHEYEHLQGHVFIDNI 154
>gi|317486329|ref|ZP_07945159.1| polypeptide deformylase [Bilophila wadsworthia 3_1_6]
gi|316922399|gb|EFV43655.1| polypeptide deformylase [Bilophila wadsworthia 3_1_6]
Length = 172
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 13/131 (9%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
+M M + D G++APQVG +RL I+ PE+ EG MV +NP
Sbjct: 33 EMTEAMYKSDGIGIAAPQVGQLIRLVIIDVTGPEKR--EG-----------KMVLVNPVW 79
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
L V + EGC S+ ++KV R +V + D G P S+ A+ A +QHE+D
Sbjct: 80 TPLPDAGYVESEEGCLSVPDYRSKVRRTARVHVEATDLDGNPVSFDADDILAICVQHEID 139
Query: 127 HLDGLLFTDSM 137
HLDG LF D +
Sbjct: 140 HLDGKLFIDRI 150
>gi|284031698|ref|YP_003381629.1| peptide deformylase [Kribbella flavida DSM 17836]
gi|283810991|gb|ADB32830.1| Peptide deformylase [Kribbella flavida DSM 17836]
Length = 240
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 4/142 (2%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K + ++ M GL+APQVG+PLR+ ++ P + S + E +
Sbjct: 76 LKDFVELLRRTMLAAPGVGLAAPQVGVPLRIAVLEDP---ATVSAEVAEARERYPLEFLA 132
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NPE +DK EGC S+ V R KV D TG T GW ARI
Sbjct: 133 VLNPEYAPRG-RDKRGFYEGCLSMPGFTGVVSRPLKVDAGYSDLTGARRRLTLSGWQARI 191
Query: 121 IQHEMDHLDGLLFTDSMLPKSL 142
QHE DHL+G L+ D + P+S+
Sbjct: 192 FQHETDHLNGRLYVDQVEPRSM 213
>gi|427718637|ref|YP_007066631.1| peptide deformylase [Calothrix sp. PCC 7507]
gi|427351073|gb|AFY33797.1| peptide deformylase [Calothrix sp. PCC 7507]
Length = 187
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 73/137 (53%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ +M M D GL+APQVG+ +L ++ +P+ A P +V
Sbjct: 41 IRQLVREMLQTMYSKDGIGLAAPQVGVHKQLIVIDL-EPDNP------------ANPPLV 87
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP +K + ++ A EGC S+ + V R + V++ DE+G+P + A R
Sbjct: 88 LINPTIKQVS-REVCVAQEGCLSIPGVYLDVKRPQVVEVAYKDESGRPRTLQANDLLGRC 146
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHEMDHL+G++F D +
Sbjct: 147 IQHEMDHLNGVVFVDRV 163
>gi|407477615|ref|YP_006791492.1| methionyl-tRNA formyltransferase [Exiguobacterium antarcticum B7]
gi|407061694|gb|AFS70884.1| Methionyl-tRNA formyltransferase [Exiguobacterium antarcticum B7]
Length = 458
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 18/137 (13%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I +M + M +D GL+APQ+ P+R+ +V D G ++ IN
Sbjct: 29 MIDRMFDTMYEYDGVGLAAPQINQPIRVAVVHTDD-----ETGPVE-----------LIN 72
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE I++ EGC S+ + V R+ ++ + D G+ A G+ AR IQH
Sbjct: 73 PE--IIEASGSEIDDEGCLSMPGIFGPVERFEQIVVKSQDRLGRSIKIKANGFFARAIQH 130
Query: 124 EMDHLDGLLFTDSMLPK 140
EMDHLDG+LFTD ++ K
Sbjct: 131 EMDHLDGILFTDKLVEK 147
>gi|220931832|ref|YP_002508740.1| peptide deformylase [Halothermothrix orenii H 168]
gi|254767591|sp|B8CWS6.1|DEF_HALOH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|219993142|gb|ACL69745.1| peptide deformylase [Halothermothrix orenii H 168]
Length = 154
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 70/135 (51%), Gaps = 18/135 (13%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M + + GL+APQVG+ R+ +V + +G I+ IN
Sbjct: 31 LIDNMVETMYQAEGVGLAAPQVGVSKRIIVV-----DTGEGQGLIE-----------LIN 74
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE I++ + K EGC S+ KV R KV + GL+ GK AEG+ AR QH
Sbjct: 75 PE--IIETEGKDIMEEGCLSVPGQTGKVIRASKVTVKGLNRGGKEVRIRAEGFLARAFQH 132
Query: 124 EMDHLDGLLFTDSML 138
E+DHL+G+LF D ++
Sbjct: 133 EIDHLNGILFIDKVV 147
>gi|326783953|ref|YP_004324347.1| RIIA-RIIB membrane-associated protein [Synechococcus phage S-SSM7]
gi|310003965|gb|ADO98360.1| RIIA-RIIB membrane-associated protein [Synechococcus phage S-SSM7]
Length = 128
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 14/129 (10%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
QM M D GL+APQVG+ R+ +V + +E K + P + W + E
Sbjct: 7 QMCEAMWASDGIGLAAPQVGINKRVIVV------DETTEEHGKYAHLMVNPKITWKSEEK 60
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
+ D EGC S+ +V R + +++T ++ GK W +G AAR++QHE+D
Sbjct: 61 VLFD--------EGCLSVPDQNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEID 112
Query: 127 HLDGLLFTD 135
HL+G+LF D
Sbjct: 113 HLEGILFVD 121
>gi|260072680|gb|ACX30577.1| N-formylmethionyl-tRNA deformylase [uncultured SUP05 cluster
bacterium]
Length = 163
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 12/142 (8%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESF--------SEGDIKKFEM 53
+I++ M M D GL+A Q+ L++ ++ PD ++ + ++ D K+ +
Sbjct: 6 RILVKNMFETMYAEDGIGLAATQINQHLQIVVMDVPDSQDDYELLLKNRKNDSD-KETNI 64
Query: 54 QAFPHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTA 113
Q P + +INP++ + +K +EGC S+ QA+V R ++ + L+E G+ + A
Sbjct: 65 QHHP-LCFINPKITTISGHEK--HIEGCLSVPGFQAEVERSNQITIEALNEQGESFTLHA 121
Query: 114 EGWAARIIQHEMDHLDGLLFTD 135
A IQHE+DHL G+LF D
Sbjct: 122 SNLLAVCIQHELDHLKGILFVD 143
>gi|389862359|ref|YP_006364599.1| peptide deformylase 1 [Modestobacter marinus]
gi|388484562|emb|CCH86100.1| Peptide deformylase 1 [Modestobacter marinus]
Length = 185
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 17/141 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++L M M+ D GL+A Q+G+ R+F++ PD + D+ +
Sbjct: 37 LRHLLLDMFASMEAADGVGLAANQIGVDARVFVMDCPDADGE----DVIGY--------- 83
Query: 61 WINPEMKILDYKDKVTALE----GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
+NP + +LD A+E GC S+ A++ R + ++ G+D G P S A G
Sbjct: 84 VVNPVLTVLDPVGDEPAVEVTEEGCLSVPGPYAELERAFRARVDGVDAHGAPTSIEATGM 143
Query: 117 AARIIQHEMDHLDGLLFTDSM 137
AAR +QHE+DHLDG ++ D +
Sbjct: 144 AARCLQHEVDHLDGTVYVDRL 164
>gi|383758268|ref|YP_005437253.1| peptide deformylase Def [Rubrivivax gelatinosus IL144]
gi|381378937|dbj|BAL95754.1| peptide deformylase Def [Rubrivivax gelatinosus IL144]
Length = 178
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ M M + GL+APQ+G+ L+L + F E + + E A P V
Sbjct: 29 LHALVADMMETMAAANGAGLAAPQIGVDLQLVVFGF--------ERNERYPEAPAVPLTV 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP + L +KV EGC S+ L+ VPR+ +++ TG D G+ AEG+ AR+
Sbjct: 81 LCNPVITPLS-DEKVDGWEGCLSVPGLRGVVPRFARIRYTGFDAQGRAIEREAEGFHARV 139
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHE DHL G L+ M
Sbjct: 140 VQHECDHLIGRLYPTRM 156
>gi|434405601|ref|YP_007148486.1| peptide deformylase [Cylindrospermum stagnale PCC 7417]
gi|428259856|gb|AFZ25806.1| peptide deformylase [Cylindrospermum stagnale PCC 7417]
Length = 187
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 73/137 (53%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ +M M D GL+APQVG+ ++ ++ +P+ + A P +V
Sbjct: 41 IRQLVREMLQTMYSQDGIGLAAPQVGIHKQIIVIDC-EPDNA------------ANPPLV 87
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP +K + +D A EGC S+ + V R + V++ DE+G+P A R
Sbjct: 88 LINPTVKQVS-RDICVAQEGCLSIPGVYLDVKRPQVVEIAYKDESGRPQILKASDLLGRC 146
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHEMDHL+G++F D +
Sbjct: 147 IQHEMDHLNGVVFVDRV 163
>gi|428773914|ref|YP_007165702.1| peptide deformylase [Cyanobacterium stanieri PCC 7202]
gi|428688193|gb|AFZ48053.1| peptide deformylase [Cyanobacterium stanieri PCC 7202]
Length = 199
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 72/139 (51%), Gaps = 18/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAF-PDPEESFSEGDIKKFEMQAFPHM 59
+K + LQM M + GL+APQVG+ ++ +V PD E + P +
Sbjct: 53 VKDLALQMLQTMYAENGIGLAAPQVGVNKQMIVVDLQPDNETN--------------PPL 98
Query: 60 VWINPEMKILDYKDKVTALE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
V INP +K Y V LE GC S+ ++ V R K+++ + GK A GW A
Sbjct: 99 VMINPVIK--KYSKDVCVLEEGCLSIPNVFFDVTRPSKIEVEFKNLEGKLQRIKAIGWMA 156
Query: 119 RIIQHEMDHLDGLLFTDSM 137
R+IQHEMDHL G+LF D +
Sbjct: 157 RVIQHEMDHLTGVLFVDRI 175
>gi|34558486|ref|NP_908301.1| peptide deformylase [Wolinella succinogenes DSM 1740]
gi|39930815|sp|Q7M7M2.1|DEF_WOLSU RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|34481780|emb|CAE11201.1| POLYPEPTIDE DEFORMYLASE PDF FORMYLMETHIONINEDEFORMYLASE [Wolinella
succinogenes]
Length = 170
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 12/119 (10%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+A QVG P+R IV PD EG+ ++ + + INPE L + ++
Sbjct: 44 GLAAVQVGNPIRALIVNIPD-----EEGNQERENL-----LEIINPEF--LSKEGEIQFN 91
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ V R+ +V+LT D G+ AEG+ A +QHE+DHL+G+LF D +
Sbjct: 92 EGCLSVPEFYEDVTRFDRVRLTYQDRYGERHEIEAEGYLAVALQHEIDHLNGILFIDKL 150
>gi|386388971|ref|ZP_10073813.1| peptide deformylase [Haemophilus paraphrohaemolyticus HK411]
gi|385696705|gb|EIG27176.1| peptide deformylase [Haemophilus paraphrohaemolyticus HK411]
Length = 170
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 68/130 (52%), Gaps = 17/130 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M M + GL+APQVG+ R+ + EGD K +V INPE
Sbjct: 35 MLETMYEHEGIGLAAPQVGVLSRVITIDI--------EGDKKN-------QVVLINPE-- 77
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
IL+ + + EGC S+ +A VPR KV++ L+ G+ + A+G A IQHE+DH
Sbjct: 78 ILESEGETGIEEGCLSIPGHRALVPRKEKVKVKALNRQGEEVIYDADGLFAICIQHEIDH 137
Query: 128 LDGLLFTDSM 137
L+G+LF D +
Sbjct: 138 LNGVLFVDHI 147
>gi|298246394|ref|ZP_06970200.1| peptide deformylase [Ktedonobacter racemifer DSM 44963]
gi|297553875|gb|EFH87740.1| peptide deformylase [Ktedonobacter racemifer DSM 44963]
Length = 169
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 21/131 (16%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M M + GL+APQ+ L +R+F+ + EG + NPE
Sbjct: 35 MFETMHASNGVGLAAPQIALSIRVFVAEY--------EGR----------RVAIFNPE-- 74
Query: 68 ILDYKDKVTALEGCASLKS-LQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
I+ + + EGC S+ L + R K+ + G+D GKP AEGW ARI+QHE+D
Sbjct: 75 IVKAEGEERGQEGCLSIPGYLGNNIRRAAKIVVKGVDVKGKPVRVNAEGWFARILQHEID 134
Query: 127 HLDGLLFTDSM 137
HLDG+LF D +
Sbjct: 135 HLDGILFLDRL 145
>gi|169837246|ref|ZP_02870434.1| peptide deformylase [candidate division TM7 single-cell isolate
TM7a]
Length = 238
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 59/93 (63%), Gaps = 4/93 (4%)
Query: 50 KFEMQAFPHMV-WINPEMKILDYKDKVTA-LEGCASLKSLQAKVPRYRKVQLTGLDETGK 107
+F+ ++ H INPE I+ Y+ ++T EGC S+ + KVPRY KV++ L+E GK
Sbjct: 118 EFDNKSNNHFTALINPE--IIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRVKALNEDGK 175
Query: 108 PDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPK 140
AEG+ AR++QHE+DH +G++F D + K
Sbjct: 176 EIRIKAEGFLARVLQHEIDHTNGIVFIDHIKNK 208
>gi|429730390|ref|ZP_19265037.1| peptide deformylase [Corynebacterium durum F0235]
gi|429147546|gb|EKX90570.1| peptide deformylase [Corynebacterium durum F0235]
Length = 169
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 19/142 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFI--VAFPDPEESFSEGDIKKFEMQAFPH 58
+K ++ M + M +D GL+A QVG+ R+F+ A +P M+ H
Sbjct: 28 LKTLVEDMLDTMDEYDGVGLAANQVGVTRRVFVFDCAHENPG------------MRG--H 73
Query: 59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
+ INP + + ++K EGC S+ ++ + RY V++TG D G P TA G A
Sbjct: 74 V--INPVWEPVG-EEKQVGNEGCLSIPAVVKETERYNSVKVTGQDVDGNPVEITASGLMA 130
Query: 119 RIIQHEMDHLDGLLFTDSMLPK 140
R IQHE DHLDG+LF + P+
Sbjct: 131 RCIQHETDHLDGVLFLKRLSPE 152
>gi|387927086|ref|ZP_10129765.1| peptide deformylase [Bacillus methanolicus PB1]
gi|387589230|gb|EIJ81550.1| peptide deformylase [Bacillus methanolicus PB1]
Length = 161
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 18/131 (13%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
M N M +D GL+APQ+G+ ++ IV D G I+ INPE
Sbjct: 34 NMYNTMIEYDGVGLAAPQIGVKKQIAIVDIDD-----ETGTIE-----------LINPE- 76
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
IL+ + T EGC S L +V R V++ D GKP AE + AR IQHE+D
Sbjct: 77 -ILETSGEQTGPEGCLSFPGLYGEVTRPYFVKVKAQDRKGKPFILEAEDFLARAIQHEID 135
Query: 127 HLDGLLFTDSM 137
HL G+LFT +
Sbjct: 136 HLQGVLFTSKV 146
>gi|78049192|ref|YP_365367.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325926668|ref|ZP_08187982.1| peptide deformylase [Xanthomonas perforans 91-118]
gi|346726281|ref|YP_004852950.1| N-formylmethionyl-tRNA deformylase [Xanthomonas axonopodis pv.
citrumelo F1]
gi|78037622|emb|CAJ25367.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325543020|gb|EGD14469.1| peptide deformylase [Xanthomonas perforans 91-118]
gi|346651028|gb|AEO43652.1| N-formylmethionyl-tRNA deformylase [Xanthomonas axonopodis pv.
citrumelo F1]
Length = 171
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 11/150 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ M M GL+APQ+ + L+L + F D E + E A P
Sbjct: 28 LHTLVADMFETMDAARGVGLAAPQIAVDLQLMVFGF-DASERYPEA-------PAVPRTA 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
N +++ L ++ EGC S+ L+A +PRYR ++ G G P AEG+ AR+
Sbjct: 80 LANAQIEPLS-EEMENGWEGCLSIPGLRAVIPRYRFIRYRGFAPDGTPIERDAEGFHARV 138
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDI 150
+QHE DHL G L+ + ++ + ++D+
Sbjct: 139 VQHEYDHLVGRLYPSRI--ENFDTFGFEDV 166
>gi|392390840|ref|YP_006427443.1| peptide deformylase [Ornithobacterium rhinotracheale DSM 15997]
gi|390521918|gb|AFL97649.1| peptide deformylase [Ornithobacterium rhinotracheale DSM 15997]
Length = 190
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 3/160 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M + G++APQVGLP+RLF++ E +I + E++ F V+IN
Sbjct: 30 LIENMFETMYTANGIGIAAPQVGLPIRLFVIDITPFAEDEEYENIAE-ELKTFKK-VFIN 87
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
KI + + EGC S+ +++ V R + L LDE + T AR+IQH
Sbjct: 88 AH-KIEETGEPWKFNEGCLSIPNVREDVARPESITLRYLDENFVEHTETFSDIFARVIQH 146
Query: 124 EMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
E DH+DG+LFTD + + V + + G + ++Y M
Sbjct: 147 EYDHIDGVLFTDYLSNFKKKLVSKKLDKISKGNVNVKYKM 186
>gi|317482560|ref|ZP_07941575.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
gi|316915982|gb|EFV37389.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
Length = 217
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M GL+APQ+GL L L +V E+ + + E+ FP V IN
Sbjct: 58 LIDTMHTTMLEAPGVGLAAPQIGLGLALAVV-----EDHVRDDEDDPREIAEFPFHVIIN 112
Query: 64 PEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
P K DK + EGC S QA R+ + DE GK S GW ARI Q
Sbjct: 113 PSYKPT--SDKTASFYEGCLSFDGYQAVRKRWLDITAEWDDEDGKHHSEPLHGWPARIFQ 170
Query: 123 HEMDHLDGLLFTDSMLPKSL 142
HE DHL G L+ D +SL
Sbjct: 171 HETDHLSGELYIDRAEIRSL 190
>gi|257486818|ref|ZP_05640859.1| peptide deformylase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|422598386|ref|ZP_16672648.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422680943|ref|ZP_16739214.1| peptide deformylase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|330988665|gb|EGH86768.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331010288|gb|EGH90344.1| peptide deformylase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
Length = 179
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M M GL+APQ+G+ L+L I F E + + +A P +
Sbjct: 30 LNTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFGFERSE--------RYPQAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L + EGC S+ L+ V RY+ ++ G D G+P A G+ AR+
Sbjct: 82 LLNPLITPLSPSLE-EGWEGCLSVPGLRGMVNRYQSIRYEGFDPEGQPVERVAHGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|407938691|ref|YP_006854332.1| peptide deformylase [Acidovorax sp. KKS102]
gi|407896485|gb|AFU45694.1| peptide deformylase [Acidovorax sp. KKS102]
Length = 179
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 8/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M M + GL+APQ+G+ L+L I D + + P V +N
Sbjct: 32 LVRDMFETMASVNGAGLAAPQIGVDLQLVIFGSNDRNPRYPNRPL-------VPPTVLLN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L +++ EGC S+ L+ KVPR+ +++ TG D G P T +G+ AR++QH
Sbjct: 85 PVITPLGAEEE-EDWEGCLSVPGLRGKVPRWSRIRYTGFDLYGDPIDRTVDGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGKLY 153
>gi|398304099|ref|ZP_10507685.1| peptide deformylase [Bacillus vallismortis DV1-F-3]
Length = 160
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 18/130 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M D GL+APQ+G+ R +V D D + ++ +NPE
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRATVVDIGD--------DSGRIDL--------VNPE-- 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
IL+ + T +EGC S + V R V++ + GKP A G+ AR +QHEMDH
Sbjct: 77 ILEKSGEQTGVEGCLSFPGVYGDVTRSDYVKVRAFNRQGKPFILEARGFLARAVQHEMDH 136
Query: 128 LDGLLFTDSM 137
LDG+LFT +
Sbjct: 137 LDGVLFTSKI 146
>gi|32307482|gb|AAP79146.1| peptide deformylase [Bigelowiella natans]
Length = 315
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 78/152 (51%), Gaps = 13/152 (8%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
+M +VM D GL+APQVG+ RL + +GD +K + + MV NPE+
Sbjct: 152 EMFDVMYDDDGCGLAAPQVGINYRLMVFN--------PQGDRRKKDTE----MVLANPEI 199
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
I ++K EGC S ++ +V R KV + D G+ + EG+ AR+ QHE D
Sbjct: 200 -ISSGEEKDWFREGCLSFPGIRGQVERPTKVLIRAQDVKGEDIEFELEGFTARVFQHEYD 258
Query: 127 HLDGLLFTDSMLPKSLECVCWQDINLQNGLLE 158
HL G LF D M K + + + + L++ +E
Sbjct: 259 HLSGTLFHDRMPDKEVAEIHAKLVTLEDNFVE 290
>gi|398875132|ref|ZP_10630320.1| peptide deformylase [Pseudomonas sp. GM74]
gi|398192901|gb|EJM80027.1| peptide deformylase [Pseudomonas sp. GM74]
Length = 179
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G+D G+P A G+ AR++QH
Sbjct: 85 PLITPLSPILE-EGFEGCLSVPGLRGAVQRYQQIRYEGVDPKGEPIVRMASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|384175314|ref|YP_005556699.1| peptide deformylase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349594538|gb|AEP90725.1| peptide deformylase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 140
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 64/127 (50%), Gaps = 18/127 (14%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M D GL+APQ+G+ R +V D D + ++ +NPE
Sbjct: 15 MYDTMLEMDGVGLAAPQIGILKRAAVVDIGD--------DRGRIDL--------VNPE-- 56
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
IL+ + T +EGC S + V R V++ + GKP A G+ AR +QHEMDH
Sbjct: 57 ILEKSGEQTGIEGCLSFPGVYGDVTRADYVKVRAFNRQGKPFILEARGFLARAVQHEMDH 116
Query: 128 LDGLLFT 134
LDG+LFT
Sbjct: 117 LDGVLFT 123
>gi|254431727|ref|ZP_05045430.1| peptide deformylase [Cyanobium sp. PCC 7001]
gi|197626180|gb|EDY38739.1| peptide deformylase [Cyanobium sp. PCC 7001]
Length = 183
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 63/120 (52%), Gaps = 14/120 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ +L ++ DP+ A P MV INPE++ T
Sbjct: 54 IGLAAPQVGVHKQLLVIDL-DPDNP------------ATPPMVLINPEIRSFGGSLD-TY 99
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + V R V+++ DE G+P +G AR IQHEMDHL+G+LF D +
Sbjct: 100 EEGCLSIPGVYLNVVRPTAVEVSFRDEMGRPQKLRTDGLLARCIQHEMDHLNGVLFVDRV 159
>gi|428279167|ref|YP_005560902.1| peptide deformylase [Bacillus subtilis subsp. natto BEST195]
gi|291484124|dbj|BAI85199.1| peptide deformylase [Bacillus subtilis subsp. natto BEST195]
Length = 160
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 18/130 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M D GL+APQ+G+ R +V D D + ++ +NPE
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVDIGD--------DRGRIDL--------VNPE-- 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
IL+ + T +EGC S + V R V++ + GKP A G+ AR +QHEMDH
Sbjct: 77 ILERSGEQTGIEGCLSFPGVYGDVKRADYVKVRAFNRQGKPFILEARGFLARAVQHEMDH 136
Query: 128 LDGLLFTDSM 137
LDG+LFT +
Sbjct: 137 LDGVLFTSKI 146
>gi|225452422|ref|XP_002276964.1| PREDICTED: peptide deformylase 1B, chloroplastic [Vitis vinifera]
gi|296087647|emb|CBI34903.3| unnamed protein product [Vitis vinifera]
Length = 275
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 80/162 (49%), Gaps = 21/162 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ +M +VM + D GLSAPQVG+ ++L + +P EG+ +V
Sbjct: 107 LKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVF---NPVGERGEGE----------EIV 153
Query: 61 WINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+NP ++ Y K+ EGC S + A V R V++ D TG G AR
Sbjct: 154 LVNP--RVNKYSKKIVLFNEGCLSFPGIYADVERPESVKIDARDITGARFMINLSGLPAR 211
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
+ QHE DHL G LF D M + L+ + NLQ+ LE +Y
Sbjct: 212 VFQHEFDHLQGTLFFDRMTEEVLDSI---HANLQD--LERKY 248
>gi|365140594|ref|ZP_09346604.1| peptide deformylase [Klebsiella sp. 4_1_44FAA]
gi|386036819|ref|YP_005956732.1| peptide deformylase [Klebsiella pneumoniae KCTC 2242]
gi|419764948|ref|ZP_14291187.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae DSM
30104]
gi|424832656|ref|ZP_18257384.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|449053759|ref|ZP_21732590.1| peptide deformylase [Klebsiella pneumoniae hvKP1]
gi|339763947|gb|AEK00168.1| peptide deformylase [Klebsiella pneumoniae KCTC 2242]
gi|363653449|gb|EHL92415.1| peptide deformylase [Klebsiella sp. 4_1_44FAA]
gi|397742076|gb|EJK89295.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae DSM
30104]
gi|414710099|emb|CCN31803.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|448875564|gb|EMB10577.1| peptide deformylase [Klebsiella pneumoniae hvKP1]
Length = 169
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 60/122 (49%), Gaps = 17/122 (13%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+A QV + R+ ++ + E +V INPEM L+ +
Sbjct: 45 IGLAATQVDIHQRIIVIDVSENREE---------------QLVLINPEM--LEKDGETGI 87
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ +A VPR KV++ LD GKP A+G A IQHEMDHL G LF D +
Sbjct: 88 EEGCLSIPEQRALVPRAEKVKIRALDRNGKPFELEADGLLAICIQHEMDHLVGKLFIDYL 147
Query: 138 LP 139
P
Sbjct: 148 SP 149
>gi|374292333|ref|YP_005039368.1| Formylmethionine deformylase [Azospirillum lipoferum 4B]
gi|357424272|emb|CBS87139.1| Formylmethionine deformylase [Azospirillum lipoferum 4B]
Length = 183
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQ+ R+ + P + E + + V +NP ++ L DKV
Sbjct: 46 VGLAAPQISESRRIIVFRVP----------ADRGEGEEVANTVLVNPVIEPLS-DDKVLG 94
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ L+ VPRY +++ G G A G+ AR++QHE+DHLDG+L+ D M
Sbjct: 95 WEGCLSIPGLRGLVPRYGRIRYRGYGLDGARIEREASGFHARVVQHEVDHLDGVLYLDRM 154
Query: 138 LPKSLECVCWQDINLQN 154
L VC ++++ N
Sbjct: 155 DDLRL-LVCTEEMHHIN 170
>gi|170078943|ref|YP_001735581.1| peptide deformylase [Synechococcus sp. PCC 7002]
gi|238689048|sp|B1XJP0.1|DEF_SYNP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|169886612|gb|ACB00326.1| peptide deformylase [Synechococcus sp. PCC 7002]
Length = 187
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 16/121 (13%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ RL ++ DPE A +V INPE+K + ++
Sbjct: 58 IGLAAPQVGVNKRLIVIDT-DPENP------------ANAPLVLINPEIK--KFGQQLCP 102
Query: 78 LE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
E GC S+ + V R +++++ DE GKP A G +R+IQHE+DHLDG++F D
Sbjct: 103 FEEGCLSIPGVHLDVIRPDEIEVSYRDEQGKPKRIKASGLLSRVIQHEIDHLDGVMFVDR 162
Query: 137 M 137
+
Sbjct: 163 V 163
>gi|163756828|ref|ZP_02163937.1| peptide deformylase [Kordia algicida OT-1]
gi|161323217|gb|EDP94557.1| peptide deformylase [Kordia algicida OT-1]
Length = 196
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 80/149 (53%), Gaps = 10/149 (6%)
Query: 19 GLSAPQVGLPLRLFIV---AFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
GL+APQVGLP+RLF++ F + EE E K+ E V+IN KI++ +
Sbjct: 45 GLAAPQVGLPIRLFMIDATGFAEDEE-LDEEQRKQLEGM---KKVFINA--KIIERNGEP 98
Query: 76 TAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFT 134
EGC S+ ++ V R +++ +DE + +G AAR+IQHE DH++G+LFT
Sbjct: 99 WVFNEGCLSIPDIREDVFRPESIKIEYMDENFEKHVEEYDGLAARVIQHEYDHIEGILFT 158
Query: 135 DSMLPKSLECVCWQDINLQNGLLELRYYM 163
D + + + N+ G +++ Y M
Sbjct: 159 DKLSALKRRLLKGRLTNISRGRIKVDYKM 187
>gi|429334991|ref|ZP_19215638.1| peptide deformylase [Pseudomonas putida CSV86]
gi|428760398|gb|EKX82665.1| peptide deformylase [Pseudomonas putida CSV86]
Length = 179
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M+ GL+APQ+G+ L+L I F E + + + P +
Sbjct: 30 LQQLIDDMFETMRHVGGVGLAAPQIGVDLQLVIFGFERSE--------RYPDAEPVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + + + + EGC S+ L+ V RY+ + G+D G+P TAEG+ AR+
Sbjct: 82 LLNPLITPMGTELE-EGWEGCLSVPGLRGVVSRYKSIFYEGVDPHGQPIRRTAEGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|388543385|ref|ZP_10146676.1| peptide deformylase [Pseudomonas sp. M47T1]
gi|388278697|gb|EIK98268.1| peptide deformylase [Pseudomonas sp. M47T1]
Length = 179
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M M+ GL+APQ+G+ L+L I F E + + + P +
Sbjct: 30 LDALIADMFQTMEHVGGVGLAAPQIGVDLQLVIFGFERSE--------RYPDAEPVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L+ + EGC S+ L+ V RY ++ G D G+P A G+ AR+
Sbjct: 82 LINPLITPLNPATE-DGWEGCLSVPGLRGVVDRYSHIRYEGFDPQGQPIQRVASGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|407783702|ref|ZP_11130898.1| peptide deformylase [Oceanibaculum indicum P24]
gi|407200298|gb|EKE70307.1| peptide deformylase [Oceanibaculum indicum P24]
Length = 178
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 74/138 (53%), Gaps = 9/138 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ +K+ + GL+APQ+G+PLR+ I A P P + D + E+ +
Sbjct: 21 IAALVEDLKDSLAAVGGTGLAAPQIGVPLRVVIFAVP-PHRTTGAPDDQPQEL-----IE 74
Query: 61 WINPEMKILDYKDKVT-ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
INPE+ L D++ EGC S+ ++ +VPR +++ GL G G+ AR
Sbjct: 75 LINPEIAPL--GDEIALGWEGCLSIPGMRGEVPRPARIRYRGLRLDGTMVEREVGGFHAR 132
Query: 120 IIQHEMDHLDGLLFTDSM 137
++QHE DHLDG+L+ M
Sbjct: 133 VVQHECDHLDGMLYPMRM 150
>gi|320355330|ref|YP_004196669.1| peptide deformylase [Desulfobulbus propionicus DSM 2032]
gi|320123832|gb|ADW19378.1| peptide deformylase [Desulfobulbus propionicus DSM 2032]
Length = 168
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 19/139 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV--AFPDPEESFSEGDIKKFEMQAFPH 58
+ +I M + M GL+A Q+G+ +L +V + D E ++
Sbjct: 28 LATLIEDMADTMYNAPGVGLAANQIGVARQLVLVDRSTKDNERNY--------------- 72
Query: 59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
+V INPE+ + VT EGC S+ KV R++K+ +T LD G P + AE A
Sbjct: 73 LVLINPEISA--GEGSVTDEEGCLSVIECYDKVKRFKKIHVTALDREGNPLEFDAEDRFA 130
Query: 119 RIIQHEMDHLDGLLFTDSM 137
RIIQHE+DHL G LF D +
Sbjct: 131 RIIQHEVDHLLGTLFIDRL 149
>gi|321315338|ref|YP_004207625.1| peptide deformylase [Bacillus subtilis BSn5]
gi|449094264|ref|YP_007426755.1| peptide deformylase [Bacillus subtilis XF-1]
gi|320021612|gb|ADV96598.1| peptide deformylase [Bacillus subtilis BSn5]
gi|449028179|gb|AGE63418.1| peptide deformylase [Bacillus subtilis XF-1]
Length = 160
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 18/130 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M D GL+APQ+G+ R +V D D + ++ +NPE
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVDIGD--------DRGRIDL--------VNPE-- 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
IL+ + T +EGC S + V R V++ + GKP A G+ AR +QHEMDH
Sbjct: 77 ILEKSGEQTGIEGCLSFPGVYGDVTRADYVKVRAFNRQGKPFILEARGFLARAVQHEMDH 136
Query: 128 LDGLLFTDSM 137
LDG+LFT +
Sbjct: 137 LDGVLFTSKI 146
>gi|398999648|ref|ZP_10702383.1| peptide deformylase [Pseudomonas sp. GM18]
gi|398131270|gb|EJM20589.1| peptide deformylase [Pseudomonas sp. GM18]
Length = 179
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G D G+P A G+ AR++QH
Sbjct: 85 PLITPLSPLME-EGFEGCLSVPGLRGAVDRYQQIRYEGFDPKGEPIMRIASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|373114090|ref|ZP_09528307.1| peptide deformylase [Fusobacterium necrophorum subsp. funduliforme
1_1_36S]
gi|371652977|gb|EHO18383.1| peptide deformylase [Fusobacterium necrophorum subsp. funduliforme
1_1_36S]
Length = 136
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 15/124 (12%)
Query: 16 DLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
D GL+APQVG+ LR+F+ PEES ++KK INP + L ++ +
Sbjct: 5 DGVGLAAPQVGISLRMFVCDIGSPEES----NVKKI----------INPLITPLT-EETI 49
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
+ EGC S+ + KV R K++L +E G+ EG+ A ++QHE DHL+ LF D
Sbjct: 50 SVEEGCLSIPGIYKKVERIAKLKLEYQNEQGEFVEEILEGFPAIVVQHEYDHLEATLFVD 109
Query: 136 SMLP 139
+ P
Sbjct: 110 RVSP 113
>gi|119946929|ref|YP_944609.1| peptide deformylase [Psychromonas ingrahamii 37]
gi|119865533|gb|ABM05010.1| peptide deformylase [Psychromonas ingrahamii 37]
Length = 182
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I QM + G++APQ+ +R+FI+ P + + + P + IN
Sbjct: 37 LINQMMFAVSEAGGVGIAAPQIHHSVRMFIMC-SKPNARYPDAPLMA------PTAI-IN 88
Query: 64 PEMKILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
PE IL Y DKV EGC S+ S++ VPR+ ++ + +D+ G G+ ARI Q
Sbjct: 89 PE--ILHYSSDKVKGWEGCLSVPSMRGLVPRHSQITVRYVDQQGNKQQQELTGFIARIFQ 146
Query: 123 HEMDHLDGLLFTDSM 137
HE+DHL+GL F D +
Sbjct: 147 HELDHLNGLTFIDQL 161
>gi|407794102|ref|ZP_11141131.1| N-formylmethionyl-tRNA deformylase [Idiomarina xiamenensis 10-D-4]
gi|407213526|gb|EKE83382.1| N-formylmethionyl-tRNA deformylase [Idiomarina xiamenensis 10-D-4]
Length = 172
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I M M GL+A QV + RLF+ D E +E +V
Sbjct: 28 LRTTIDDMFETMYESQGVGLAATQVDVHKRLFVA---DCSEDQNEP------------LV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INPE I + + T EGC S + AKV R KV ++ LD+ G+ S TAEG A
Sbjct: 73 FINPE--ITESEGDFTNEEGCLSFPGVYAKVERASKVTVSALDKHGERFSKTAEGLLAIC 130
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHL+G LF D + P
Sbjct: 131 IQHEIDHLNGKLFVDYLSP 149
>gi|229918580|ref|YP_002887226.1| methionyl-tRNA formyltransferase [Exiguobacterium sp. AT1b]
gi|229470009|gb|ACQ71781.1| methionyl-tRNA formyltransferase [Exiguobacterium sp. AT1b]
Length = 466
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 65/128 (50%), Gaps = 18/128 (14%)
Query: 10 NVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKIL 69
+ M +D G++APQV L RL +V D + P +V INPE I+
Sbjct: 35 DTMYEYDGVGVAAPQVNLNQRLAVVHTDD---------------ETGP-LVLINPE--II 76
Query: 70 DYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLD 129
+ + LEGC S+ V R+ + + D G+ + A G+ AR IQHEMDHLD
Sbjct: 77 ETSGREVGLEGCLSIPGEFGFVERHESIVVKNQDVKGRTHTIQASGFFARAIQHEMDHLD 136
Query: 130 GLLFTDSM 137
G+LFTD +
Sbjct: 137 GVLFTDKL 144
>gi|428309242|ref|YP_007120219.1| peptide deformylase [Microcoleus sp. PCC 7113]
gi|428250854|gb|AFZ16813.1| peptide deformylase [Microcoleus sp. PCC 7113]
Length = 187
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHM 59
++ + QM M D GL+APQVG+ ++ ++ PD ++ +
Sbjct: 41 IRQVAQQMLQTMYSADGIGLAAPQVGIHKQIIVIDCEPDNPDNKP--------------L 86
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V INP +K K A EGC S+ ++ V R +V++ DE G+P + A+G AR
Sbjct: 87 VLINPTIKRFGSK-LCDAQEGCLSIPNVYLDVMRPEEVEVAYKDENGRPQTLKADGLLAR 145
Query: 120 IIQHEMDHLDGLLFTDSM 137
IQHEMDHL+G++F D +
Sbjct: 146 AIQHEMDHLNGVMFVDRV 163
>gi|194289796|ref|YP_002005703.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424]
gi|193223631|emb|CAQ69638.1| putative POLYPEPTIDE DEFORMYLASE PROTEIN [Cupriavidus taiwanensis
LMG 19424]
Length = 177
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 13/135 (9%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M + M + GL+APQ+G+ L++ I F + + + + P V
Sbjct: 28 LRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVIFGF--------DRNPRYPDAPTVPKTV 79
Query: 61 WINP--EMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
INP EM+ + +D EGC S+ L+ VPR+ +++ +G D G AEG+ A
Sbjct: 80 LINPVLEMQSDEMED---GWEGCLSVPGLRGVVPRHLRLKYSGYDLMGNRIERVAEGFHA 136
Query: 119 RIIQHEMDHLDGLLF 133
R++QHE DHL G+L+
Sbjct: 137 RVVQHECDHLQGILY 151
>gi|85817752|gb|EAQ38926.1| peptide deformylase [Dokdonia donghaensis MED134]
Length = 196
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 8/148 (5%)
Query: 19 GLSAPQVGLPLRLFIV---AFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
GL+APQVGLP+R+F+V F D +ESF+ + K ++ +F +IN E+ + ++
Sbjct: 45 GLAAPQVGLPIRIFLVDTTPFAD-DESFTPEEQK--QLSSF-KKTFINAEILEEEGEEWA 100
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
+ EGC S+ + V R V + DE K + T EG AR+IQHE DH+DG+LFTD
Sbjct: 101 FS-EGCLSIPGINEDVFRKPTVTIKYQDENFKEHTETYEGLIARVIQHEYDHIDGILFTD 159
Query: 136 SMLPKSLECVCWQDINLQNGLLELRYYM 163
+ + + N+ G Y M
Sbjct: 160 KLSSLKKRLIKGKLANISKGKCSADYRM 187
>gi|70731936|ref|YP_261678.1| peptide deformylase [Pseudomonas protegens Pf-5]
gi|68346235|gb|AAY93841.1| peptide deformylase [Pseudomonas protegens Pf-5]
Length = 179
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + E +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGF--------EHSERYPEAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY+ ++ G D G+P A G+ AR++QH
Sbjct: 85 PLITPLSPVLE-EGWEGCLSVPGLRGAVQRYQHIRYEGFDPRGEPIVRVASGFHARVVQH 143
Query: 124 EMDHLDGLLFTDSM 137
E DHL G L+ +
Sbjct: 144 ECDHLIGRLYPSRI 157
>gi|89898499|ref|YP_515609.1| peptide deformylase [Chlamydophila felis Fe/C-56]
gi|123722301|sp|Q253S4.1|DEF_CHLFF RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|89331871|dbj|BAE81464.1| polypeptide deformylase [Chlamydophila felis Fe/C-56]
Length = 186
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 8/137 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M M GL+APQVG L LF+V E +GD+ + FP V
Sbjct: 27 IRQLVQDMYETMVAHKGVGLAAPQVGESLSLFVVCV---EGETEDGDLIFCD---FP-KV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INP + +D V EGC S+ L+A V R + + +T L+ G+ + EG+ ARI
Sbjct: 80 YINPVLSNAS-EDLVIGREGCLSIPGLRADVYRPQSITVTALNLDGQEFTEHLEGFPARI 138
Query: 121 IQHEMDHLDGLLFTDSM 137
I HE DHL G+L+ D M
Sbjct: 139 IMHENDHLHGVLYIDKM 155
>gi|336417228|ref|ZP_08597554.1| peptide deformylase [Bacteroides ovatus 3_8_47FAA]
gi|335936426|gb|EGM98356.1| peptide deformylase [Bacteroides ovatus 3_8_47FAA]
Length = 184
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M D GL+APQ+GLP+R+ + E + E K F +
Sbjct: 27 LKELIENMFETMVHADGVGLAAPQIGLPIRVVTITLDPLSEEYPE--FKDF------NKA 78
Query: 61 WINPEMKILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+INP IL+ ++V EGC SL + V R K+++ +DE EG+ AR
Sbjct: 79 YINPH--ILEVGGEEVNMEEGCLSLPGIHETVKRGDKIRVKYMDENFVEYEEEVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHLDG +F D + P
Sbjct: 137 VMQHEFDHLDGKMFIDHISP 156
>gi|311104085|ref|YP_003976938.1| peptide deformylase 1 [Achromobacter xylosoxidans A8]
gi|310758774|gb|ADP14223.1| peptide deformylase 1 [Achromobacter xylosoxidans A8]
Length = 177
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M M GL+APQ+G+ L+L I F D E + + A P +
Sbjct: 28 LHALIDDMFETMAAAQGVGLAAPQIGVDLQLVIFGF-DRNERYPDA-------PAVPQTI 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP + L + EGC S+ L+ VPRYR+++ +G D G+ A+G+ AR+
Sbjct: 80 LCNPVITPLS-DEMEDGWEGCLSVPGLRGLVPRYRRIRYSGRDPYGQLIEREADGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHECDHLIGRLY 151
>gi|88855001|ref|ZP_01129666.1| polypeptide deformylase [marine actinobacterium PHSC20C1]
gi|88815529|gb|EAR25386.1| polypeptide deformylase [marine actinobacterium PHSC20C1]
Length = 205
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ M M+ GL+APQVG+PLR+F+ + D +++ G V
Sbjct: 46 LNTLVSDMFETMEEAPGVGLAAPQVGVPLRVFVYDWIDDDDAHWRG-------------V 92
Query: 61 WINPEM---KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWA 117
INPE+ Y+ EGC S+ + + R +V L +D KP A GW
Sbjct: 93 AINPELWHTPTPVYEPGEADEEGCLSIPGERFGLVRAERVILRAVDLDQKPFEIEASGWL 152
Query: 118 ARIIQHEMDHLDGLLFTDSM 137
ARI QHE DHLDG+L+ D +
Sbjct: 153 ARIFQHEYDHLDGVLYADRL 172
>gi|428210480|ref|YP_007094833.1| peptide deformylase [Chroococcidiopsis thermalis PCC 7203]
gi|428012401|gb|AFY90964.1| peptide deformylase [Chroococcidiopsis thermalis PCC 7203]
Length = 171
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 11 VMKRFDLFGLSAPQVGLPLRLFIVAF-PDPEESFSEGDIKKFEMQAFPHMVWINPEMKIL 69
+K+ + G++APQVG+ R+FIVA P+P + EM+ P INP KIL
Sbjct: 36 TVKQANGVGIAAPQVGVSDRIFIVASRPNPRYPHAP------EMEPTP---MINP--KIL 84
Query: 70 DYKDKV-TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHL 128
D+ EGC S+ ++ VPR R +++ D GK + ARI QHE+DHL
Sbjct: 85 ARSDESEKGWEGCLSIPGIRGSVPRDRAIEVEYSDRYGKLHKQELTDFVARIFQHELDHL 144
Query: 129 DGLLFTDSM 137
DG++F D +
Sbjct: 145 DGIVFLDRL 153
>gi|148241454|ref|YP_001226611.1| peptide deformylase [Synechococcus sp. RCC307]
gi|166198524|sp|A5GQU9.1|DEF_SYNR3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|147849764|emb|CAK27258.1| Peptide deformylase [Synechococcus sp. RCC307]
Length = 201
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 14/120 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ +L ++ DPEE+ A P +V INPE+ + T
Sbjct: 72 IGLAAPQVGVHQQLLVIDL-DPEEA------------ANPPLVLINPEI-VATSGALDTY 117
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + V R +V + DE G+P A+G AR I HEMDHL+G+LF D +
Sbjct: 118 EEGCLSIPGVYLNVVRPSQVDVKYRDELGRPQRRKADGLMARCILHEMDHLNGVLFVDRV 177
>gi|381151815|ref|ZP_09863684.1| peptide deformylase [Methylomicrobium album BG8]
gi|380883787|gb|EIC29664.1| peptide deformylase [Methylomicrobium album BG8]
Length = 174
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 9/136 (6%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVW 61
+ +I MK + GL+APQ+G +R+ IVA P + + + + V
Sbjct: 31 RAVIAAMKATLANTQGVGLAAPQIGESVRIVIVA-SRPTPRYPDAPLME-------PTVM 82
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP + L + EGC S+ ++A VPR++ +++ DE G P + + AR+
Sbjct: 83 INPSFETLSESIE-KGWEGCLSIPGIRALVPRFKDIRVDYTDEQGHPVQIRLQDFIARVF 141
Query: 122 QHEMDHLDGLLFTDSM 137
QHE DHL+GL+F D +
Sbjct: 142 QHEFDHLNGLVFLDRV 157
>gi|229918497|ref|YP_002887143.1| peptide deformylase [Exiguobacterium sp. AT1b]
gi|229469926|gb|ACQ71698.1| peptide deformylase [Exiguobacterium sp. AT1b]
Length = 179
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 20/123 (16%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
G++APQ+G+ R F V + EE+F + NP KI + + T L
Sbjct: 60 GIAAPQLGVNRRFFTVLLQEEEETFK--------------LSIFNP--KITSHSVEQTFL 103
Query: 79 ---EGCASL-KSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFT 134
EGC S+ + ++ VPR+R++ L G D GKP G A + QHE+DHLDG++F
Sbjct: 104 NGGEGCLSVDRVVKGNVPRFRRITLEGFDRDGKPIKLRLRGMRAVVCQHELDHLDGIMFY 163
Query: 135 DSM 137
D +
Sbjct: 164 DRI 166
>gi|318040515|ref|ZP_07972471.1| peptide deformylase [Synechococcus sp. CB0101]
Length = 200
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQ+G PL+L ++ + E P ++ INPE+ + T
Sbjct: 71 IGLAAPQIGEPLQLLVIDL-------------EIEDPKSPPLILINPEITSVG-GSLCTY 116
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + V R V ++ DE G+P A+G AR IQHEMDHL+G+LF D +
Sbjct: 117 EEGCLSIPGVYLDVVRPSVVDVSYRDEMGRPKRLKADGLMARCIQHEMDHLNGVLFVDRV 176
>gi|329942666|ref|ZP_08291445.1| peptide deformylase [Chlamydophila psittaci Cal10]
gi|332287261|ref|YP_004422162.1| peptide deformylase [Chlamydophila psittaci 6BC]
gi|384450413|ref|YP_005663013.1| peptide deformylase [Chlamydophila psittaci 6BC]
gi|384451414|ref|YP_005664012.1| peptide deformylase [Chlamydophila psittaci 01DC11]
gi|384452388|ref|YP_005664985.1| peptide deformylase [Chlamydophila psittaci 08DC60]
gi|384453363|ref|YP_005665959.1| peptide deformylase [Chlamydophila psittaci C19/98]
gi|384454342|ref|YP_005666937.1| peptide deformylase [Chlamydophila psittaci 02DC15]
gi|392376504|ref|YP_004064282.1| peptide deformylase [Chlamydophila psittaci RD1]
gi|406592156|ref|YP_006739336.1| peptide deformylase [Chlamydia psittaci CP3]
gi|406593251|ref|YP_006740430.1| peptide deformylase [Chlamydia psittaci NJ1]
gi|406594677|ref|YP_006741469.1| peptide deformylase [Chlamydia psittaci MN]
gi|407453825|ref|YP_006732933.1| peptide deformylase [Chlamydia psittaci 84/55]
gi|407455144|ref|YP_006734035.1| peptide deformylase [Chlamydia psittaci GR9]
gi|407456521|ref|YP_006735094.1| peptide deformylase [Chlamydia psittaci VS225]
gi|407457876|ref|YP_006736181.1| peptide deformylase [Chlamydia psittaci WS/RT/E30]
gi|407459121|ref|YP_006737224.1| peptide deformylase [Chlamydia psittaci M56]
gi|410858286|ref|YP_006974226.1| peptide deformylase [Chlamydia psittaci 01DC12]
gi|449070962|ref|YP_007438042.1| peptide deformylase [Chlamydophila psittaci Mat116]
gi|313847847|emb|CBY16841.1| peptide deformylase [Chlamydophila psittaci RD1]
gi|325507284|gb|ADZ18922.1| peptide deformylase [Chlamydophila psittaci 6BC]
gi|328814926|gb|EGF84915.1| peptide deformylase [Chlamydophila psittaci Cal10]
gi|328914507|gb|AEB55340.1| peptide deformylase [Chlamydophila psittaci 6BC]
gi|334692144|gb|AEG85363.1| peptide deformylase [Chlamydophila psittaci C19/98]
gi|334693124|gb|AEG86342.1| peptide deformylase [Chlamydophila psittaci 01DC11]
gi|334694099|gb|AEG87316.1| peptide deformylase [Chlamydophila psittaci 02DC15]
gi|334695077|gb|AEG88293.1| peptide deformylase [Chlamydophila psittaci 08DC60]
gi|405780584|gb|AFS19334.1| peptide deformylase [Chlamydia psittaci 84/55]
gi|405781687|gb|AFS20436.1| peptide deformylase [Chlamydia psittaci GR9]
gi|405783109|gb|AFS21857.1| peptide deformylase [Chlamydia psittaci MN]
gi|405783782|gb|AFS22529.1| peptide deformylase [Chlamydia psittaci VS225]
gi|405784742|gb|AFS23488.1| peptide deformylase [Chlamydia psittaci WS/RT/E30]
gi|405786038|gb|AFS24783.1| peptide deformylase [Chlamydia psittaci M56]
gi|405788028|gb|AFS26771.1| peptide deformylase [Chlamydia psittaci CP3]
gi|405789123|gb|AFS27865.1| peptide deformylase [Chlamydia psittaci NJ1]
gi|410811181|emb|CCO01826.1| peptide deformylase [Chlamydia psittaci 01DC12]
gi|449039470|gb|AGE74894.1| peptide deformylase [Chlamydophila psittaci Mat116]
Length = 184
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 8/119 (6%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQVG +RLF++ E +GD+ + FP V+INP + + +D V
Sbjct: 45 GLAAPQVGESVRLFVMCV---EGETEDGDLIFCD---FPK-VYINPVLSDVS-EDLVLGR 96
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ L+A V R R + + ++ G+ + EG+ ARII HE DHL+G+L+ D M
Sbjct: 97 EGCLSIPGLRADVYRPRSITVKAINLDGQEFTEHLEGFPARIIMHENDHLNGVLYIDKM 155
>gi|255560876|ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus communis]
gi|223539350|gb|EEF40941.1| polypeptide deformylase, putative [Ricinus communis]
Length = 282
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 16/149 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ +M +VM + D GLSAPQVG+ ++L + +P EG+ +V
Sbjct: 114 LKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVF---NPVGERGEGE----------EIV 160
Query: 61 WINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
INP + Y K+ EGC S + A V R V++ D G + G AR
Sbjct: 161 LINPRLN--KYSKKIVPFNEGCLSFPGIYADVLRPESVKIDARDINGARFTVNLSGLPAR 218
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQ 148
+ QHE DHL+G+LF D M + L+ + Q
Sbjct: 219 VFQHEYDHLEGILFFDRMTDEVLDSIRAQ 247
>gi|428202949|ref|YP_007081538.1| peptide deformylase [Pleurocapsa sp. PCC 7327]
gi|427980381|gb|AFY77981.1| peptide deformylase [Pleurocapsa sp. PCC 7327]
Length = 188
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 16/132 (12%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
+M M + GL+APQVG+ +L ++ +P+ A P +V INP+
Sbjct: 47 EMLQTMYSSNGVGLAAPQVGIHKQLIVIDC-EPDNP------------ANPPLVLINPQ- 92
Query: 67 KILDYKDKVTALE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEM 125
I Y ++ E GC S+ + V R ++++ DE G+P A G+ AR+IQHEM
Sbjct: 93 -ITSYGSELCDFEEGCLSIPGVYMDVTRPETIEVSFKDEQGRPRKLKASGFLARVIQHEM 151
Query: 126 DHLDGLLFTDSM 137
DHL+G+LF D +
Sbjct: 152 DHLEGVLFVDRV 163
>gi|342214379|ref|ZP_08707077.1| peptide deformylase [Veillonella sp. oral taxon 780 str. F0422]
gi|341593928|gb|EGS36740.1| peptide deformylase [Veillonella sp. oral taxon 780 str. F0422]
Length = 158
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 20/131 (15%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M M + D GL+APQV + R+ ++ D E INPE
Sbjct: 35 MAETMYKTDGVGLAAPQVNVSKRIIVL---DDGNGLIE---------------VINPE-- 74
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
I+ + LEGC S+ L V RY K+++ G++ K AEG+ ARI QHE+DH
Sbjct: 75 IVKKEGSQVGLEGCLSVPELFGDVERYDKIEVHGINRNNKKIKIKAEGFLARIFQHEIDH 134
Query: 128 LDGLLFTDSML 138
L+G+LF + ++
Sbjct: 135 LNGILFVEKLV 145
>gi|251797740|ref|YP_003012471.1| peptide deformylase [Paenibacillus sp. JDR-2]
gi|247545366|gb|ACT02385.1| peptide deformylase [Paenibacillus sp. JDR-2]
Length = 161
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 18/128 (14%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M M D GL+APQ+G+ R+ +V D S +NP
Sbjct: 35 MAETMYDADGVGLAAPQIGISKRVIVVDIGDETGLIS----------------MVNP--V 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
I++ + + EGC S+ +L V RY ++ + G D G P + A G+ A QHE+DH
Sbjct: 77 IVENEGEQVGPEGCLSIPNLNGDVKRYERIVINGQDGEGNPFTVEASGFLAVAFQHEIDH 136
Query: 128 LDGLLFTD 135
L+G+LFTD
Sbjct: 137 LNGILFTD 144
>gi|217967822|ref|YP_002353328.1| peptide deformylase [Dictyoglomus turgidum DSM 6724]
gi|254767580|sp|B8E0X7.1|DEF_DICTD RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|217336921|gb|ACK42714.1| peptide deformylase [Dictyoglomus turgidum DSM 6724]
Length = 153
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 20/141 (14%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M MK + GL+APQVG LR+ +V D EE+ +
Sbjct: 27 VKNLVRDMIETMKFSNGVGLAAPQVGESLRIIVV---DYEEN---------------PIA 68
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INPE IL+ +V EGC S+ ++ + R ++ D G+ + A+G AR+
Sbjct: 69 FINPE--ILEMDGEVLDYEGCLSVPGVEVPIKRAERIIFKAQDLQGRTKRYKAKGLLARV 126
Query: 121 IQHEMDHLDGLLFTDSMLPKS 141
IQHE+DHL+G+L D + +S
Sbjct: 127 IQHEVDHLEGILILDRAVEES 147
>gi|150007311|ref|YP_001302054.1| peptide deformylase [Parabacteroides distasonis ATCC 8503]
gi|255014064|ref|ZP_05286190.1| peptide deformylase [Bacteroides sp. 2_1_7]
gi|256839600|ref|ZP_05545109.1| polypeptide deformylase [Parabacteroides sp. D13]
gi|262382116|ref|ZP_06075254.1| polypeptide deformylase [Bacteroides sp. 2_1_33B]
gi|298375297|ref|ZP_06985254.1| peptide deformylase [Bacteroides sp. 3_1_19]
gi|301310689|ref|ZP_07216628.1| peptide deformylase [Bacteroides sp. 20_3]
gi|410101704|ref|ZP_11296632.1| peptide deformylase [Parabacteroides sp. D25]
gi|423332158|ref|ZP_17309942.1| peptide deformylase [Parabacteroides distasonis CL03T12C09]
gi|423336940|ref|ZP_17314687.1| peptide deformylase [Parabacteroides distasonis CL09T03C24]
gi|158513748|sp|A6L9R8.1|DEF_PARD8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|149935735|gb|ABR42432.1| polypeptide deformylase [Parabacteroides distasonis ATCC 8503]
gi|256738530|gb|EEU51855.1| polypeptide deformylase [Parabacteroides sp. D13]
gi|262297293|gb|EEY85223.1| polypeptide deformylase [Bacteroides sp. 2_1_33B]
gi|298267797|gb|EFI09453.1| peptide deformylase [Bacteroides sp. 3_1_19]
gi|300832263|gb|EFK62894.1| peptide deformylase [Bacteroides sp. 20_3]
gi|409229999|gb|EKN22871.1| peptide deformylase [Parabacteroides distasonis CL03T12C09]
gi|409239502|gb|EKN32286.1| peptide deformylase [Parabacteroides sp. D25]
gi|409239959|gb|EKN32742.1| peptide deformylase [Parabacteroides distasonis CL09T03C24]
Length = 185
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 15/140 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDI--KKF-EMQAFP 57
+K ++ M M D GL+APQVGL +RL ++ +GD+ F E + F
Sbjct: 27 LKQLVANMFETMYNADGVGLAAPQVGLSIRLVVI----------DGDVMGDDFPECKGFK 76
Query: 58 HMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWA 117
+ INPE + ++++ EGC SL + KV R + V++ DE + EG+A
Sbjct: 77 RAL-INPEF-LERSEEEIAMEEGCLSLPGIHEKVSRSKTVRVRYWDENWEEHEEVVEGFA 134
Query: 118 ARIIQHEMDHLDGLLFTDSM 137
ARI+QHE +HL G +F D++
Sbjct: 135 ARIVQHECEHLTGHVFIDNV 154
>gi|388467866|ref|ZP_10142076.1| peptide deformylase [Pseudomonas synxantha BG33R]
gi|388011446|gb|EIK72633.1| peptide deformylase [Pseudomonas synxantha BG33R]
Length = 179
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + E P + IN
Sbjct: 33 LIDDMFQTMEHVGGVGLAAPQIGVDLQLVIFGF--------EASERYPEAPPVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G D G+P A+G+ AR++QH
Sbjct: 85 PLITPLSPVLE-EGFEGCLSVPGLRGAVNRYQQIRYEGFDPKGEPIVRFADGFHARVVQH 143
Query: 124 EMDHLDGLLFTDSM 137
E DHL G L+ +
Sbjct: 144 ECDHLIGRLYPSRI 157
>gi|334121464|ref|ZP_08495532.1| Peptide deformylase [Microcoleus vaginatus FGP-2]
gi|333454983|gb|EGK83650.1| Peptide deformylase [Microcoleus vaginatus FGP-2]
Length = 186
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ +M M D GL+APQVG+ ++ ++ DPE A P MV
Sbjct: 41 IRQLVREMLQTMYSADGIGLAAPQVGVNKQVIVLDC-DPENP------------ATPPMV 87
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP +K D EGC S+ + +V R ++++ DE G+P + A +R
Sbjct: 88 LINPTIK-SSGSDICILQEGCLSIPGVYLEVKRPEVIEVSYRDEYGRPQTLIATELLSRA 146
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHEMDHL+G+LF D +
Sbjct: 147 IQHEMDHLNGVLFVDRV 163
>gi|172057935|ref|YP_001814395.1| methionyl-tRNA formyltransferase [Exiguobacterium sibiricum 255-15]
gi|171990456|gb|ACB61378.1| methionyl-tRNA formyltransferase [Exiguobacterium sibiricum 255-15]
Length = 461
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 18/135 (13%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I +M + M +D GL+APQ+ P+R+ +V D G I+ IN
Sbjct: 29 MIDRMFDTMYEYDGVGLAAPQINQPIRVAVVHTDD-----ETGPIE-----------LIN 72
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE I++ EGC S+ + V R+ ++ + D G+ A G+ AR IQH
Sbjct: 73 PE--IIEATGSEIDDEGCLSMPGIFGPVERFEQIVVKSQDRLGRSVKIKANGFFARAIQH 130
Query: 124 EMDHLDGLLFTDSML 138
EMDHLDG+LFTD ++
Sbjct: 131 EMDHLDGVLFTDKLV 145
>gi|427734665|ref|YP_007054209.1| peptide deformylase [Rivularia sp. PCC 7116]
gi|427369706|gb|AFY53662.1| peptide deformylase [Rivularia sp. PCC 7116]
Length = 187
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 14/131 (10%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
+M M D GL+APQVG+ +L ++ +P+ A P ++ INP +
Sbjct: 47 EMLQTMYSSDGIGLAAPQVGIHKQLIVIDI-EPDNP------------ANPPLILINPII 93
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
K + D EGC S+ + V R +++ DE G+P S A G R IQHEMD
Sbjct: 94 K-KSFGDICVEQEGCLSIPGVYLDVKRPEMIEVAYKDENGRPQSLKAGGLLGRCIQHEMD 152
Query: 127 HLDGLLFTDSM 137
HL+G++F D +
Sbjct: 153 HLNGVVFVDRV 163
>gi|408480261|ref|ZP_11186480.1| peptide deformylase [Pseudomonas sp. R81]
Length = 179
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + P + IN
Sbjct: 33 LIDDMFQTMEHVGGVGLAAPQIGVDLQLVIFGF--------ESSERYPDAPPVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G D G+P AEG+ AR++QH
Sbjct: 85 PLITPLSPVLE-EGYEGCLSVPGLRGAVDRYQQIRYEGFDPKGEPIVRIAEGFHARVVQH 143
Query: 124 EMDHLDGLLFTDSM 137
E DHL G L+ +
Sbjct: 144 ECDHLIGRLYPSRI 157
>gi|407460496|ref|YP_006738271.1| peptide deformylase [Chlamydia psittaci WC]
gi|405787261|gb|AFS26005.1| peptide deformylase [Chlamydia psittaci WC]
Length = 184
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 8/119 (6%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQVG +RLF++ E +GD+ + FP V+INP + + +D V
Sbjct: 45 GLAAPQVGESVRLFVMCV---EGETEDGDLIFCD---FPK-VYINPVLSDVS-EDLVLGR 96
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ L+A V R R + + ++ G+ + EG+ ARII HE DHL+G+L+ D M
Sbjct: 97 EGCLSIPGLRADVYRPRSITVKAINLDGQEFTEHLEGFPARIIMHENDHLNGVLYIDKM 155
>gi|374586241|ref|ZP_09659333.1| Peptide deformylase [Leptonema illini DSM 21528]
gi|373875102|gb|EHQ07096.1| Peptide deformylase [Leptonema illini DSM 21528]
Length = 176
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 9/137 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I +++ MK GL+APQ+G+ R+ IV F E+S D K E + V
Sbjct: 31 IKNLIRDLRDTMKDAGGIGLAAPQIGVLKRVVIVGF---EKSERYPDQKGIEER-----V 82
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE++ LD + EGC S+ ++ V R RK++L+ D EG+ A +
Sbjct: 83 LINPEIEALDGPGE-GFWEGCLSIPGMRGFVERPRKIKLSFYDTDENRHEEIIEGFDAVV 141
Query: 121 IQHEMDHLDGLLFTDSM 137
QHE DHLDG+L+ D +
Sbjct: 142 YQHECDHLDGMLYVDRL 158
>gi|260434658|ref|ZP_05788628.1| peptide deformylase [Synechococcus sp. WH 8109]
gi|260412532|gb|EEX05828.1| peptide deformylase [Synechococcus sp. WH 8109]
Length = 201
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 22/124 (17%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKI----LDYKD 73
GL+APQVG+ +L ++ E A P +V INPE+ LD
Sbjct: 72 IGLAAPQVGIHQQLLVIDL-------------DLENAATPPLVLINPEITAASAGLD--- 115
Query: 74 KVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLF 133
T EGC S+ + V R ++L+ DE G+P A+G AR IQHEMDHL+G+LF
Sbjct: 116 --TYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLMARCIQHEMDHLNGVLF 173
Query: 134 TDSM 137
D +
Sbjct: 174 VDRV 177
>gi|162457307|ref|YP_001619674.1| peptide deformylase [Sorangium cellulosum So ce56]
gi|161167889|emb|CAN99194.1| peptide deformylase [Sorangium cellulosum So ce56]
Length = 191
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 10/143 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
M+ I + M+ + G++A QV +P+R+F V D + +I P V
Sbjct: 31 MQAFIDDLVETMRDANGAGIAATQVHVPVRIFAVEVQDNPRYPYKPNI--------PLTV 82
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP ++ L ++ EGC S+ +L+ V R +++LTGLD G+P G +A
Sbjct: 83 VVNPVIEPL-TQETFENYEGCLSVPNLRGVVDRTTEIRLTGLDREGRPIDRVVRGLSAGT 141
Query: 121 IQHEMDHLDGLLFTDSML-PKSL 142
QHE DH+DG+LF D + P++L
Sbjct: 142 FQHEKDHVDGVLFVDRVKDPRTL 164
>gi|443310198|ref|ZP_21039859.1| peptide deformylase [Synechocystis sp. PCC 7509]
gi|442779742|gb|ELR89974.1| peptide deformylase [Synechocystis sp. PCC 7509]
Length = 175
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 18 FGLSAPQVGLPLRLFIVAF-PDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVT 76
G++APQV + RLFIVA P+P + +MQ INP++ + + V
Sbjct: 47 VGIAAPQVAVNDRLFIVASRPNPRYPTAP------QMQP---TAMINPQI-LAHSSELVK 96
Query: 77 ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
EGC S+ ++ VPRYR +++ D GK + ARI QHE+DHLDG++F D
Sbjct: 97 GWEGCLSIPGIRGLVPRYRAIEVEYSDRAGKLHKQELTDFVARIFQHELDHLDGIVFVDR 156
Query: 137 M 137
+
Sbjct: 157 L 157
>gi|398852353|ref|ZP_10609013.1| peptide deformylase [Pseudomonas sp. GM80]
gi|398244259|gb|EJN29818.1| peptide deformylase [Pseudomonas sp. GM80]
Length = 179
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGF--------EHSERYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L+ + EGC S+ L+ V R+++++ G D G+P A G+ AR++QH
Sbjct: 85 PLITPLNPLME-EGFEGCLSVPGLRGAVDRFQQIRYEGFDPKGEPIVRVASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|78213784|ref|YP_382563.1| peptide deformylase [Synechococcus sp. CC9605]
gi|123756848|sp|Q3AHC4.1|DEF_SYNSC RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|78198243|gb|ABB36008.1| Formylmethionine deformylase [Synechococcus sp. CC9605]
Length = 201
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 22/124 (17%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKI----LDYKD 73
GL+APQVG+ +L ++ E A P +V INPE+ LD
Sbjct: 72 IGLAAPQVGIHQQLLVIDL-------------DLENAATPPLVLINPEITAASAGLD--- 115
Query: 74 KVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLF 133
T EGC S+ + V R ++L+ DE G+P A+G AR IQHEMDHL+G+LF
Sbjct: 116 --TYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLMARCIQHEMDHLNGVLF 173
Query: 134 TDSM 137
D +
Sbjct: 174 VDRV 177
>gi|339326125|ref|YP_004685818.1| peptide deformylase 1 [Cupriavidus necator N-1]
gi|338166282|gb|AEI77337.1| peptide deformylase 1 [Cupriavidus necator N-1]
Length = 177
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M + M + GL+APQ+G+ L++ I F + + + + P V
Sbjct: 28 LRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVIFGF--------DRNPRYPDAPTVPKTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ ++ + EGC S+ L+ VPR+ +++ +G D G AEG+ AR+
Sbjct: 80 LINPVLE-MESDEMEDGWEGCLSVPGLRGVVPRHLRLKYSGYDLMGNRIERVAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 139 VQHECDHLQGILY 151
>gi|256424099|ref|YP_003124752.1| peptide deformylase [Chitinophaga pinensis DSM 2588]
gi|256039007|gb|ACU62551.1| peptide deformylase [Chitinophaga pinensis DSM 2588]
Length = 191
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 10/139 (7%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKK----FEMQAFPHM 59
+I M + ++ + GL+ PQ+ LP+R+FI+ D E SF+ + ++ FE
Sbjct: 28 LIENMWHTLENANGSGLATPQINLPIRIFII---DSETSFNTMNPEERKVHFEGDNGIRE 84
Query: 60 VWINPEMKILDYKD-KVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
V+INPE I +Y + K LEGC S+ + A V R V++ D + + G A
Sbjct: 85 VFINPE--ITEYSEAKCDDLEGCLSIPGVAAIVSRPYAVKIEYYDRNFQKHTKAFNGLTA 142
Query: 119 RIIQHEMDHLDGLLFTDSM 137
RIIQHE DH++G L+ D +
Sbjct: 143 RIIQHEFDHIEGRLYLDYL 161
>gi|121533703|ref|ZP_01665530.1| peptide deformylase [Thermosinus carboxydivorans Nor1]
gi|121307694|gb|EAX48609.1| peptide deformylase [Thermosinus carboxydivorans Nor1]
Length = 154
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 65/128 (50%), Gaps = 20/128 (15%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M M + GL+APQVG+ LR+ +V D G I+ INP
Sbjct: 35 MAQTMYAAEGVGLAAPQVGVSLRIIVVDVGD-------GLIE-----------LINP--V 74
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
I+ + T EGC S+ + +V RY +V + GL+ +GK T G AR +QHE+DH
Sbjct: 75 IVAAEGSETNTEGCLSVPGVYGEVERYAQVVVEGLERSGKKVRITGTGLLARALQHEIDH 134
Query: 128 LDGLLFTD 135
LDG+LF +
Sbjct: 135 LDGVLFIE 142
>gi|404399321|ref|ZP_10990905.1| peptide deformylase [Pseudomonas fuscovaginae UPB0736]
Length = 179
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F + E + E + + P + +
Sbjct: 33 LIDDMFQTMEHVGGVGLAAPQIGVDLQLVIFGF-ERSERYPEAEAVSQTILINPLITPLG 91
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE++ EGC S+ L+ V RYR+++ G G+P AEG+ AR++QH
Sbjct: 92 PELE--------EGWEGCLSVPGLRGAVERYRRIRYEGFTPKGEPLVRVAEGFHARVVQH 143
Query: 124 EMDHLDGLLFTDSM 137
E DHL G L+ +
Sbjct: 144 ECDHLIGRLYPSRI 157
>gi|344201668|ref|YP_004786811.1| peptide deformylase [Muricauda ruestringensis DSM 13258]
gi|343953590|gb|AEM69389.1| Peptide deformylase [Muricauda ruestringensis DSM 13258]
Length = 196
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 8/137 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGD-IKKFEMQAFPHM--V 60
+I M M GL+APQVG+P+R+F+V F+E D + K E + V
Sbjct: 30 LITNMWETMYNAHGVGLAAPQVGIPIRMFMVD----TTPFAEDDGLTKEEQEQLDGFKKV 85
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+IN +++ + K+ EGC S+ ++ V R ++ +T LDE K + T +G AR+
Sbjct: 86 FINAKIEEENGKE-WDFNEGCLSIPDIREDVKRKPEITITYLDEDFKEHTETYDGLLARV 144
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHE DH++G+LFTD +
Sbjct: 145 IQHEYDHIEGILFTDKL 161
>gi|308177432|ref|YP_003916838.1| peptide deformylase [Arthrobacter arilaitensis Re117]
gi|307744895|emb|CBT75867.1| peptide deformylase [Arthrobacter arilaitensis Re117]
Length = 213
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVA--FPDPEESFSEGDIKKFEMQAFPHMVWINPE 65
M+ M GL+APQVG+PL++ ++ +P PEE+ + E + + NPE
Sbjct: 60 MRQTMYDAPGVGLAAPQVGIPLQIAVLEDLYPIPEEAAT-----MREREPLEYFEIFNPE 114
Query: 66 MKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEM 125
++ V EGC S Q V R + T D G+ + + GW ARI+QHE
Sbjct: 115 YVSASEREAVF-YEGCLSFDGFQGVVTRPADISATYKDRDGQEITRSFSGWQARIVQHEA 173
Query: 126 DHLDGLLFTDSMLPKSL--ECVCWQ 148
DHL G ++ D +SL E W+
Sbjct: 174 DHLSGTVYIDKAETRSLIDETELWR 198
>gi|89098706|ref|ZP_01171588.1| peptide deformylase [Bacillus sp. NRRL B-14911]
gi|89086668|gb|EAR65787.1| peptide deformylase [Bacillus sp. NRRL B-14911]
Length = 181
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 18/127 (14%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M FD GL+APQ+G+ R+ +V D + INPE
Sbjct: 55 MYDTMIEFDGVGLAAPQIGIRKRIAVVDIDDENGTIE----------------LINPE-- 96
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
I++ + T EGC S L +V R V++ D GK + A+ + AR IQHE+DH
Sbjct: 97 IIETGGEQTGPEGCLSFPGLYGEVTRPFTVKIKAQDRKGKSFTLEADDFLARAIQHEIDH 156
Query: 128 LDGLLFT 134
LDG+LFT
Sbjct: 157 LDGVLFT 163
>gi|381397323|ref|ZP_09922735.1| Peptide deformylase [Microbacterium laevaniformans OR221]
gi|380775308|gb|EIC08600.1| Peptide deformylase [Microbacterium laevaniformans OR221]
Length = 180
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M M GL+APQVG+ LR++ ++ D + G I E+
Sbjct: 20 IRTLVADMFETMDAAPGVGLAAPQVGVGLRIYTYSYQDDDGQPWRGVILNPEL------- 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
W+ P + D EGC S + + R +V +TG+D G+P +GW ARI
Sbjct: 73 WMRP--SVPGAPDPDDESEGCLSFPGERFALRRSDEVLVTGIDLDGEPIRIQVDGWRARI 130
Query: 121 IQHEMDHLDGLLFTDSM 137
+QHE DHLDG+L+ D +
Sbjct: 131 MQHEFDHLDGILYVDRL 147
>gi|58176979|pdb|1V3Y|A Chain A, The Crystal Structure Of Peptide Deformylase From Thermus
Thermophilus Hb8
gi|58176980|pdb|1V3Y|B Chain B, The Crystal Structure Of Peptide Deformylase From Thermus
Thermophilus Hb8
Length = 192
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 72/125 (57%), Gaps = 10/125 (8%)
Query: 19 GLSAPQVGLPLRLFI-VAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDK-VT 76
GL+APQ+GL RLF+ V + D E E +++ + + V NP ++ Y++ V
Sbjct: 44 GLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVRRVY---VVANP---VITYREGLVE 97
Query: 77 ALEGCASLKSLQAK-VPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EG SL L ++ VPR ++++ DE G+ EG+ AR+ QHE+DHLDG+LF +
Sbjct: 98 GTEGXLSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFE 157
Query: 136 SMLPK 140
LPK
Sbjct: 158 R-LPK 161
>gi|398864310|ref|ZP_10619846.1| peptide deformylase [Pseudomonas sp. GM78]
gi|398245366|gb|EJN30888.1| peptide deformylase [Pseudomonas sp. GM78]
Length = 179
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY+ ++ G D G+P A G+ AR++QH
Sbjct: 85 PLITPLSPILE-EGFEGCLSVPGLRGAVDRYQHIRYEGFDPKGEPIVRIASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|398952867|ref|ZP_10675034.1| peptide deformylase [Pseudomonas sp. GM33]
gi|398154537|gb|EJM43006.1| peptide deformylase [Pseudomonas sp. GM33]
Length = 179
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGFEHSE--------RYPDAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G+D G+P A G AR++QH
Sbjct: 85 PLITPLSPIME-EGFEGCLSVPGLRGAVQRYQQIRYEGVDPKGEPIVRVASGVHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|428227261|ref|YP_007111358.1| peptide deformylase [Geitlerinema sp. PCC 7407]
gi|427987162|gb|AFY68306.1| peptide deformylase [Geitlerinema sp. PCC 7407]
Length = 187
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M D GL+APQV + +L +V +P+++ + P ++
Sbjct: 41 IRTLIRNMLQTMYSADGIGLAAPQVAVQKQLIVVDC-EPDDATT------------PPLI 87
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ +D A EGC S+ + V R ++++ DE G+P A G +R
Sbjct: 88 LINPAIQRAS-RDVCMAQEGCLSIPGVYLDVQRPEVIEVSYKDEQGRPQKLMASGLLSRA 146
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHEMDHL G+LF D +
Sbjct: 147 IQHEMDHLHGVLFVDRV 163
>gi|373110189|ref|ZP_09524458.1| peptide deformylase [Myroides odoratimimus CCUG 10230]
gi|423130772|ref|ZP_17118447.1| peptide deformylase [Myroides odoratimimus CCUG 12901]
gi|423134471|ref|ZP_17122118.1| peptide deformylase [Myroides odoratimimus CIP 101113]
gi|423327181|ref|ZP_17304989.1| peptide deformylase [Myroides odoratimimus CCUG 3837]
gi|371642831|gb|EHO08389.1| peptide deformylase [Myroides odoratimimus CCUG 10230]
gi|371644631|gb|EHO10162.1| peptide deformylase [Myroides odoratimimus CCUG 12901]
gi|371647228|gb|EHO12738.1| peptide deformylase [Myroides odoratimimus CIP 101113]
gi|404607751|gb|EKB07253.1| peptide deformylase [Myroides odoratimimus CCUG 3837]
Length = 195
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 8/135 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHM---V 60
+I M + M GL+APQVGLP+RLF+V F+E D E AF
Sbjct: 30 LIANMYDTMYGAHGVGLAAPQVGLPIRLFVV----DTAPFAEMDGNTEEEIAFLTTFKRT 85
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+IN ++ + + ++ + EGC S+ + V R K+Q+ DE +G AAR+
Sbjct: 86 FINAKI-LKEEGEEWSFNEGCLSIPDVHEPVKRKSKIQIEYFDENFVKHVEEFDGLAARV 144
Query: 121 IQHEMDHLDGLLFTD 135
IQHE DH++G+LFTD
Sbjct: 145 IQHEYDHIEGVLFTD 159
>gi|417844300|ref|ZP_12490345.1| Peptide deformylase [Haemophilus haemolyticus M21639]
gi|341956931|gb|EGT83346.1| Peptide deformylase [Haemophilus haemolyticus M21639]
Length = 169
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I+ M + M + GL+APQV + R+ + EGD + +V
Sbjct: 28 IRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDV--------EGDKQN-------QIV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE IL + + EGC S+ +A VPR KV++ LD GK + A+G A
Sbjct: 73 LINPE--ILVSEGETGIEEGCLSIPGFRALVPRKEKVKVRALDRDGKEFTLDADGLLAIC 130
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHL+G+LF D + P
Sbjct: 131 IQHEIDHLNGILFVDYLSP 149
>gi|269468439|gb|EEZ80104.1| N-formylmethionyl-tRNA deformylase [uncultured SUP05 cluster
bacterium]
Length = 185
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 12/142 (8%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESF--------SEGDIKKFEM 53
+I++ M M D GL+A Q+ L++ ++ PD ++ + ++ D K+ +
Sbjct: 28 RILVKNMFETMYAEDGIGLAATQINQHLQIVVMDVPDSQDDYELLLKNRKNDSD-KETNI 86
Query: 54 QAFPHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTA 113
Q P + +INP++ + +K +EGC S+ QA+V R ++ + L+E G+ + A
Sbjct: 87 QHHP-LCFINPKITTISGHEK--HIEGCLSVPGFQAEVERSNQITIEALNEQGESFTLHA 143
Query: 114 EGWAARIIQHEMDHLDGLLFTD 135
A IQHE+DHL G+LF D
Sbjct: 144 SNLLAVCIQHELDHLKGILFVD 165
>gi|385243560|ref|YP_005811406.1| Peptide deformylase [Chlamydia trachomatis D-EC]
gi|385244440|ref|YP_005812284.1| Peptide deformylase [Chlamydia trachomatis D-LC]
gi|385270037|ref|YP_005813197.1| Peptide deformylase [Chlamydia trachomatis A2497]
gi|297748483|gb|ADI51029.1| Peptide deformylase [Chlamydia trachomatis D-EC]
gi|297749363|gb|ADI52041.1| Peptide deformylase [Chlamydia trachomatis D-LC]
gi|347975177|gb|AEP35198.1| Peptide deformylase [Chlamydia trachomatis A2497]
Length = 191
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 12/142 (8%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++L M M + GL+APQVG + LFI+ E +G++ + FP V
Sbjct: 37 LRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIMGV---ERELEDGELVFCD---FPR-V 89
Query: 61 WINPEMKILDYKDK--VTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
+INP ++ K + V EGC S+ L+ +V R K+ ++ + G+ S EG+ A
Sbjct: 90 FINP---VITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAKNLDGQQFSLALEGFLA 146
Query: 119 RIIQHEMDHLDGLLFTDSMLPK 140
RI+ HE DHL G+L+ D M K
Sbjct: 147 RIVMHETDHLHGVLYIDRMSDK 168
>gi|421485395|ref|ZP_15932954.1| peptide deformylase [Achromobacter piechaudii HLE]
gi|400196314|gb|EJO29291.1| peptide deformylase [Achromobacter piechaudii HLE]
Length = 177
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M M GL+APQ+G+ L+L I F D E + + P +
Sbjct: 28 LHALIDDMFETMAAAQGVGLAAPQIGVDLQLVIFGF-DRNERYPDA-------PPVPQTI 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP + L + EGC S+ L+ +VPRYR ++ +G D G+ AEG+ AR+
Sbjct: 80 LCNPVITPLS-DEMEDGWEGCLSVPGLRGQVPRYRHIRYSGRDPYGQLIEREAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHECDHLIGRLY 151
>gi|206901011|ref|YP_002251154.1| peptide deformylase [Dictyoglomus thermophilum H-6-12]
gi|238058219|sp|B5YF46.1|DEF_DICT6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|206740114|gb|ACI19172.1| peptide deformylase [Dictyoglomus thermophilum H-6-12]
Length = 153
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 20/135 (14%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M MK + GL+APQVG LR+ +V + D +V INPE
Sbjct: 34 MIETMKFCNGVGLAAPQVGESLRIIVVDYEDN------------------PIVLINPE-- 73
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
I++ + EGC S+ ++ V R ++ D G+ + A+G AR++QHE+DH
Sbjct: 74 IIEMSGEELDYEGCLSVPGVEVPVKRAERIVFKAQDLDGRTKKYRAKGLLARVVQHEVDH 133
Query: 128 LDGLLFTDSMLPKSL 142
LDG+L D + ++L
Sbjct: 134 LDGMLILDRAVEETL 148
>gi|270308074|ref|YP_003330132.1| peptide deformylase [Dehalococcoides sp. VS]
gi|270153966|gb|ACZ61804.1| peptide deformylase [Dehalococcoides sp. VS]
Length = 167
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 18/137 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M D GL+APQVG+ LRL + PD +E+ V
Sbjct: 28 IQTLIDDMIETMSSADGAGLAAPQVGVSLRLVVFREPDAKEA----------------TV 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE+ + + +VT EGC S+ ++ R V GLD GK G A++
Sbjct: 72 LINPEIVKKEGQRQVT--EGCLSIPGYFGELTRAETVTAKGLDRHGKACRIKGTGIVAQL 129
Query: 121 IQHEMDHLDGLLFTDSM 137
++HE +HLDG+L+ D +
Sbjct: 130 LEHETEHLDGILYIDHL 146
>gi|251793801|ref|YP_003008533.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700]
gi|422337241|ref|ZP_16418213.1| peptide deformylase [Aggregatibacter aphrophilus F0387]
gi|247535200|gb|ACS98446.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700]
gi|353345793|gb|EHB90084.1| peptide deformylase [Aggregatibacter aphrophilus F0387]
Length = 170
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 17/136 (12%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
II M + M + + GL+APQV + R+ + EGD + +V IN
Sbjct: 31 IIDDMFDTMYQEEGIGLAAPQVDILQRIITIDI--------EGDKQN-------QLVLIN 75
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE IL+ + + EGC S+ +A VPR KV + LD GK + A+ A IQH
Sbjct: 76 PE--ILESEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLKADRLLAICIQH 133
Query: 124 EMDHLDGLLFTDSMLP 139
E+DHL+G+LF D + P
Sbjct: 134 EIDHLNGILFVDYLSP 149
>gi|357024209|ref|ZP_09086370.1| peptide deformylase [Mesorhizobium amorphae CCNWGS0123]
gi|355543895|gb|EHH13010.1| peptide deformylase [Mesorhizobium amorphae CCNWGS0123]
Length = 176
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 66/121 (54%), Gaps = 16/121 (13%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+A Q+G PLRL ++ D+ K + PH V+INPE IL+ D+ +
Sbjct: 45 IGLAAIQIGEPLRLLVI------------DLAKEDETPAPH-VFINPE--ILESSDQRSV 89
Query: 78 LE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
E GC S+ A+V R V++ LD GK AEG A +QHE+DHL+G+LF D
Sbjct: 90 YEEGCLSIPDYYAEVERPASVRVKYLDRDGKLQEMQAEGLMATCLQHEIDHLNGVLFIDH 149
Query: 137 M 137
+
Sbjct: 150 I 150
>gi|354605407|ref|ZP_09023395.1| polypeptide deformylase [Alistipes indistinctus YIT 12060]
gi|353346949|gb|EHB91227.1| polypeptide deformylase [Alistipes indistinctus YIT 12060]
Length = 185
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHMVWI 62
I M M D GL+APQVG +R+F+V A P EE D KK +I
Sbjct: 30 FIADMWETMYDADGVGLAAPQVGKSIRMFVVDASPWAEEEPELADFKK---------TFI 80
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
N E+ + D+ EGC SL + V R +++ +DE G+AAR+IQ
Sbjct: 81 NAEI-YERFGDEWRFSEGCLSLPGIHEDVMRPSGIKIRYVDENFVEHDEEYSGYAARVIQ 139
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
HE DHLDG LF D + P + + + + G + Y
Sbjct: 140 HEYDHLDGKLFVDHLSPLRRTLLKSKLVGMTKGNFKAHY 178
>gi|313888509|ref|ZP_07822176.1| peptide deformylase [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845538|gb|EFR32932.1| peptide deformylase [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 163
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 75/139 (53%), Gaps = 13/139 (9%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIK-KFEMQAFPHM 59
+K++I M M GL+APQ+G+ R+ +V + EE EG+ +F M
Sbjct: 28 LKLLIDDMYETMDLAPGVGLAAPQIGILKRVIVV--DNREEDNDEGEKPMRFYM------ 79
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
INPE I++ + ++EGC S+ Q V R + +++ D G+ AE + AR
Sbjct: 80 --INPE--IIEKDGEEVSMEGCLSVPGKQGTVKRAKHIKVKYNDLEGQEKLMEAEDFLAR 135
Query: 120 IIQHEMDHLDGLLFTDSML 138
IIQHE DHLDG+L+TD +
Sbjct: 136 IIQHETDHLDGILYTDKAI 154
>gi|297181739|gb|ADI17920.1| N-formylmethionyl-tRNA deformylase [uncultured Desulfobacterales
bacterium HF0200_07G10]
Length = 174
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
G++APQVG R+ +V + + G +V INP KI Y+
Sbjct: 47 GIAAPQVGRFERIILVDVSQKPQHVNHG-----------FLVLINP--KITSYEGNSLGR 93
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
EGC S+ KV R + + L L+E G G+ AR +QHE+DHLDG LF D ++
Sbjct: 94 EGCLSVPDYTGKVERAKSIALEALNENGDKQELKLSGYEARAVQHEIDHLDGKLFIDRLV 153
Query: 139 PK 140
+
Sbjct: 154 GR 155
>gi|260583339|ref|ZP_05851112.1| peptide deformylase [Haemophilus influenzae NT127]
gi|260093610|gb|EEW77525.1| peptide deformylase [Haemophilus influenzae NT127]
Length = 169
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I+ M + M + GL+APQV + R+ + EGD + V
Sbjct: 28 IRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDV--------EGDKQN-------QFV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE IL + + EGC S+ +A VPR KV++ LD GK + A+G A
Sbjct: 73 LINPE--ILASEGETGIEEGCLSIPGFRALVPRKEKVKVRALDRDGKEFTLDADGLLAIC 130
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHL+G+LF D + P
Sbjct: 131 IQHEIDHLNGILFVDYLSP 149
>gi|75907053|ref|YP_321349.1| peptide deformylase [Anabaena variabilis ATCC 29413]
gi|75700778|gb|ABA20454.1| peptide deformylase [Anabaena variabilis ATCC 29413]
Length = 187
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M D GL+APQVG+ +L ++ +P+ A P +V IN
Sbjct: 44 LIRDMLQTMYSNDGIGLAAPQVGINKQLIVIDC-EPDNP------------ANPPLVLIN 90
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P +K + ++ +A EGC S+ + V R V++ DE G+P + A R IQH
Sbjct: 91 PTIKQVS-REICSAQEGCLSIPGVYMDVKRPEVVEVAYKDENGRPQTLKATDLLGRCIQH 149
Query: 124 EMDHLDGLLFTDSM 137
EMDHL+G++F D +
Sbjct: 150 EMDHLNGVVFVDRV 163
>gi|445063217|ref|ZP_21375453.1| N-formylmethionyl-tRNA deformylase [Brachyspira hampsonii 30599]
gi|444505393|gb|ELV05919.1| N-formylmethionyl-tRNA deformylase [Brachyspira hampsonii 30599]
Length = 177
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 20/143 (13%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAF-PHMVWINPEMKILDYKDKVTA 77
GL+A QVG+ RL +++ PD F + F++ P ++W E +IL+
Sbjct: 36 GLAAVQVGILKRLIVISVPD----FDDETKPDFKLALINPEIIWHGEEKEILE------- 84
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S ++ V RY ++++ LD+ G AE + A+++QHE+DH +G+ F D +
Sbjct: 85 -EGCLSFPEIRDDVARYTQIKVKYLDKEGNEQILDAENYIAKVLQHEIDHTNGISFIDRL 143
Query: 138 LPKSLECVCWQDINLQNGLLELR 160
+Q L+ L ELR
Sbjct: 144 -------ESYQKRRLKRELKELR 159
>gi|359800833|ref|ZP_09303369.1| peptide deformylase [Achromobacter arsenitoxydans SY8]
gi|359361215|gb|EHK62976.1| peptide deformylase [Achromobacter arsenitoxydans SY8]
Length = 177
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M M GL+APQ+G+ L+L I F D E + + P +
Sbjct: 28 LHALIDDMFETMAAAQGVGLAAPQIGVDLQLVIFGF-DRNERYPDA-------PPVPQTI 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP + L + EGC S+ L+ VPRYR+++ +G D G+ AEG+ AR+
Sbjct: 80 LCNPVITPLS-DEMEDGWEGCLSVPGLRGMVPRYRRIRYSGRDPYGQLIEREAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHECDHLIGRLY 151
>gi|269836415|ref|YP_003318643.1| peptide deformylase [Sphaerobacter thermophilus DSM 20745]
gi|269785678|gb|ACZ37821.1| peptide deformylase [Sphaerobacter thermophilus DSM 20745]
Length = 177
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 67/141 (47%), Gaps = 11/141 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ + M M D GL+ PQVG+ R+ ++ P F D EM
Sbjct: 28 LRRLAADMLETMYAADGVGLAGPQVGVMRRIIVIGVP---AGFENEDDPPIEM------A 78
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE I+ + EGC S+ + +VPR V + D + A G ARI
Sbjct: 79 LINPE--IVRASGRQVGPEGCLSIPNWYGEVPRAMHVTVKARDLDDREIRIKASGGLARI 136
Query: 121 IQHEMDHLDGLLFTDSMLPKS 141
+QHE+DHLDG+LFTD + KS
Sbjct: 137 LQHEIDHLDGILFTDRVEDKS 157
>gi|350427684|ref|XP_003494843.1| PREDICTED: peptide deformylase-like [Bombus impatiens]
Length = 170
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 61/120 (50%), Gaps = 17/120 (14%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+A QV R+ ++ D E +E V INPE I+D +
Sbjct: 45 IGLAATQVDFHQRIIVI---DVSEEGNEV------------YVIINPE--IIDKSGETGI 87
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ QA VPR+ ++++ LD GKP A+G A IQHEMDHLDG LF D +
Sbjct: 88 DEGCLSVPDTQAFVPRFERIKIKALDREGKPYEIDADGLLAICIQHEMDHLDGKLFVDYL 147
>gi|331269686|ref|YP_004396178.1| peptide deformylase [Clostridium botulinum BKT015925]
gi|329126236|gb|AEB76181.1| peptide deformylase [Clostridium botulinum BKT015925]
Length = 156
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 64/135 (47%), Gaps = 20/135 (14%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I MK M D GL+APQ+G+ RL ++ EG I IN
Sbjct: 36 LIEDMKETMYEADGVGLAAPQIGVLKRLVVI-------DVGEGPIS-----------LIN 77
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE I+ + T EGC SL Q KV R KV L+E G+ E AR I H
Sbjct: 78 PE--IISSEGSQTDYEGCLSLPGKQGKVTRPYKVVAKALNEKGEEVEIHGEALLARAICH 135
Query: 124 EMDHLDGLLFTDSML 138
E+DHLDG+LF D ++
Sbjct: 136 ELDHLDGVLFMDKVV 150
>gi|325188477|emb|CCA23012.1| unnamed protein product [Albugo laibachii Nc14]
Length = 179
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
MK + M+ + D G++APQ+G RLF++ S E ++ E P +
Sbjct: 33 MKRLAEAMRKQLIEQDGVGIAAPQLGANCRLFLM-------SMEESNVSALEAVFNPKVT 85
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+ + EM+ KD EGC S+ V R R++Q+ G + T EG+ AR+
Sbjct: 86 FFSKEME----KD----FEGCLSVPHYSGIVKRSREIQVQYSTALGMKEKRTLEGFPARV 137
Query: 121 IQHEMDHLDGLLFTDSMLPKSL 142
QHE+DHL+G+LF D + P S
Sbjct: 138 FQHELDHLNGVLFLDKVEPGSF 159
>gi|225848865|ref|YP_002729029.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1]
gi|225643764|gb|ACN98814.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1]
Length = 179
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 80/141 (56%), Gaps = 12/141 (8%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFP--H 58
+K I +M M + + GL+A Q+G+P ++ ++ + S E KK E + P
Sbjct: 27 LKEYIDKMWEFMYKEEGVGLAANQIGIPYQILVI-----DTSIRE---KKNEEETEPPVK 78
Query: 59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
MV INP KI++ + +V + EGC S +Q +PRY++V++ G +E G+ + + +
Sbjct: 79 MVLINP--KIVEKEGQVMSTEGCLSFPGVQITIPRYKRVKVVGKNEKGEDVVVESSEFLS 136
Query: 119 RIIQHEMDHLDGLLFTDSMLP 139
++QHE+DHL+G+ F + P
Sbjct: 137 IVLQHEIDHLNGIPFISYLSP 157
>gi|334366716|ref|ZP_08515641.1| peptide deformylase [Alistipes sp. HGB5]
gi|313157220|gb|EFR56650.1| peptide deformylase [Alistipes sp. HGB5]
Length = 229
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 16/120 (13%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
G++APQVG+ RL V ++F+ P ++NPE+ + +
Sbjct: 121 GIAAPQVGVSRRLIAV--------------QRFDKPGEPFECYVNPEI-VGRSAARTAGR 165
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETG-KPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ V R ++ L LDET +P + T EG+ A I QHE+DHLDG+LF D M
Sbjct: 166 EGCLSVPETSGTVLRADRIVLRYLDETTMRPVTDTVEGFTAVIFQHEIDHLDGVLFIDRM 225
>gi|359404550|ref|ZP_09197386.1| peptide deformylase [Prevotella stercorea DSM 18206]
gi|357560182|gb|EHJ41580.1| peptide deformylase [Prevotella stercorea DSM 18206]
Length = 187
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 15/143 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M D GL+APQVGL +R+ ++ E + E K F
Sbjct: 27 LQTLIANMFETMDASDGIGLAAPQVGLDIRVVVIDIDVLSEDYPE--YKGFRR------A 78
Query: 61 WINPEMKILDY---KDKVTALEGCASLKSLQAKVPRYRKVQLTGLDET-GKPDSWTAEGW 116
+INP IL+Y +K + EGC SL + V R ++ + DE + D W EG+
Sbjct: 79 YINPH--ILEYDENSEKKSMEEGCLSLPGIHENVKRPTRIHVRYQDENFVEHDEWV-EGY 135
Query: 117 AARIIQHEMDHLDGLLFTDSMLP 139
AR++QHE DHL+G +F D + P
Sbjct: 136 LARVMQHEFDHLEGTVFVDRISP 158
>gi|152972195|ref|YP_001337341.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238896783|ref|YP_002921528.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|330002243|ref|ZP_08304254.1| peptide deformylase [Klebsiella sp. MS 92-3]
gi|424931497|ref|ZP_18349869.1| Peptide deformylase 1 [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|425074593|ref|ZP_18477696.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|425083463|ref|ZP_18486560.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|425085229|ref|ZP_18488322.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|425093578|ref|ZP_18496662.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|428936960|ref|ZP_19010314.1| peptide deformylase [Klebsiella pneumoniae JHCK1]
gi|166198519|sp|A6TEU0.1|DEF_KLEP7 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|150957044|gb|ABR79074.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238549110|dbj|BAH65461.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|328537382|gb|EGF63631.1| peptide deformylase [Klebsiella sp. MS 92-3]
gi|405596058|gb|EKB69428.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|405598664|gb|EKB71866.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|405608644|gb|EKB81595.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|405610553|gb|EKB83348.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|407805684|gb|EKF76935.1| Peptide deformylase 1 [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|426297259|gb|EKV59776.1| peptide deformylase [Klebsiella pneumoniae JHCK1]
Length = 169
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
I+ M + M + GL+A QV + R+ ++ + E +V IN
Sbjct: 31 IVDDMFDTMYAEEGIGLAATQVDIHQRIIVIDVSENREE---------------QLVLIN 75
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PEM L+ + EGC S+ +A VPR KV++ LD GKP A+G A IQH
Sbjct: 76 PEM--LEKDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQH 133
Query: 124 EMDHLDGLLFTDSMLP 139
EMDHL G LF D + P
Sbjct: 134 EMDHLVGKLFIDYLSP 149
>gi|402778719|ref|YP_006634265.1| Peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|402539673|gb|AFQ63822.1| Peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae 1084]
Length = 164
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
I+ M + M + GL+A QV + R+ ++ + E +V IN
Sbjct: 26 IVDDMFDTMYAEEGIGLAATQVDIHQRIIVIDVSENREE---------------QLVLIN 70
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PEM L+ + EGC S+ +A VPR KV++ LD GKP A+G A IQH
Sbjct: 71 PEM--LEKDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQH 128
Query: 124 EMDHLDGLLFTDSMLP 139
EMDHL G LF D + P
Sbjct: 129 EMDHLVGKLFIDYLSP 144
>gi|325849091|ref|ZP_08170583.1| peptide deformylase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325480336|gb|EGC83399.1| peptide deformylase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 153
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 18/136 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+KI++ M M + D GL+APQVGL R+ +V D +G IK
Sbjct: 28 IKILLDDMAETMYKADGVGLAAPQVGLLKRVIVVDIRD-----EDGLIK----------- 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NPE I++ + +EGC S+ + A V R V + LDE G+ AEG A
Sbjct: 72 LVNPE--IIEKDGEQVGVEGCLSVPNFNANVKRPAHVIVKYLDENGEEKKIEAEGLKAVA 129
Query: 121 IQHEMDHLDGLLFTDS 136
+ HE+DHL+G+LF D+
Sbjct: 130 LCHEIDHLNGVLFIDN 145
>gi|188997413|ref|YP_001931664.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932480|gb|ACD67110.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1]
Length = 177
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 79/137 (57%), Gaps = 12/137 (8%)
Query: 5 ILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFP--HMVWI 62
I +M M + + GL+A Q+G+P ++ ++ + S E K+ E +A P MV I
Sbjct: 31 INKMWEFMYKEEGVGLAANQIGIPYQILVI-----DTSLRE---KRSEEEAEPPVKMVLI 82
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP KI++ + +V + EGC S +Q +PR ++V++ G +E G+ + + A ++Q
Sbjct: 83 NP--KIVEKEGEVQSTEGCLSFPGVQITIPRAKRVKVVGKNEKGEDVEIESSEFLAIVLQ 140
Query: 123 HEMDHLDGLLFTDSMLP 139
HE+DHL+G+ F + + P
Sbjct: 141 HEIDHLNGIPFINYLSP 157
>gi|91784124|ref|YP_559330.1| peptide deformylase [Burkholderia xenovorans LB400]
gi|385209099|ref|ZP_10035967.1| peptide deformylase [Burkholderia sp. Ch1-1]
gi|91688078|gb|ABE31278.1| Formylmethionine deformylase [Burkholderia xenovorans LB400]
gi|385181437|gb|EIF30713.1| peptide deformylase [Burkholderia sp. Ch1-1]
Length = 177
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
++ M M + GL+APQ+G+ L++ I F G +++ + P V I
Sbjct: 31 LVKDMFETMHDANGAGLAAPQIGVNLQVVIFGF---------GHNERYPDAPPVPETVLI 81
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP + + +D EGC S+ L+ V R+ ++ G D+ GKP AEG+ AR++Q
Sbjct: 82 NPTITPVS-QDMEEGWEGCLSVPGLRGAVSRFSMIKYHGFDQYGKPIDRVAEGFHARVVQ 140
Query: 123 HEMDHLDGLLF 133
HE DHL G L+
Sbjct: 141 HECDHLIGKLY 151
>gi|150025801|ref|YP_001296627.1| peptide deformylase [Flavobacterium psychrophilum JIP02/86]
gi|158513727|sp|A6H0E7.1|DEF_FLAPJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|149772342|emb|CAL43820.1| Peptide deformylase [Flavobacterium psychrophilum JIP02/86]
Length = 194
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGD-IKKFEMQAFPHM--VWINPEMKILDYKDKV 75
GL+APQVGLP+RLFIV DP FS+ D I K E A +IN +M + + ++
Sbjct: 45 GLAAPQVGLPIRLFIVD-ADP---FSDSDDISKEEAAALKGFKKTFINAKM-LKEEGEEW 99
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
+ EGC S+ ++ V R + + DE + G AR+IQHE DH++G+LFTD
Sbjct: 100 SFSEGCLSIPDVREDVYRNPNITIEYYDENFNKKTEEYNGLIARVIQHEYDHIEGVLFTD 159
Query: 136 SM 137
+
Sbjct: 160 KI 161
>gi|268316440|ref|YP_003290159.1| peptide deformylase [Rhodothermus marinus DSM 4252]
gi|262333974|gb|ACY47771.1| peptide deformylase [Rhodothermus marinus DSM 4252]
Length = 189
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 71/131 (54%), Gaps = 7/131 (5%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAF-PDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
M M GL+APQVG R+F+V P EE +EG+ + P M +INPE+
Sbjct: 34 MVETMHAASGIGLAAPQVGRRERVFVVDLTPMKEELEAEGET----LPPMP-MFFINPEI 88
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
+ +++ + EGC S+ ++ V R V++ LD +P A G AR+IQHE D
Sbjct: 89 -VWTSEEQCSFEEGCLSIPDVREVVERPVAVRIRYLDRQFRPQELEARGMLARVIQHEYD 147
Query: 127 HLDGLLFTDSM 137
HL+G+LF D +
Sbjct: 148 HLEGILFIDRI 158
>gi|289548788|ref|YP_003473776.1| peptide deformylase [Thermocrinis albus DSM 14484]
gi|289182405|gb|ADC89649.1| peptide deformylase [Thermocrinis albus DSM 14484]
Length = 174
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 14/119 (11%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+A Q+G PLR+ ++ ES +K +V INP++ ++ + +T
Sbjct: 45 GLAANQIGEPLRIMVIDTTPKRES---PPVK---------LVLINPQL--IEAEGHITYR 90
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S L +V RY KV+ LD +G+ + EG+ A + QHE+DHL+G+ F D +
Sbjct: 91 EGCLSFPGLSVEVTRYSKVRFRALDLSGEEKEYQLEGFPAIVFQHELDHLNGITFIDRL 149
>gi|407477700|ref|YP_006791577.1| peptide deformylase [Exiguobacterium antarcticum B7]
gi|407061779|gb|AFS70969.1| Peptide deformylase [Exiguobacterium antarcticum B7]
Length = 179
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 23/141 (16%)
Query: 7 QMKNVMKRFDL---FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
Q + +++DL GL+APQ+G+ R+F V D E+ G N
Sbjct: 45 QDDELAEKYDLRSGIGLAAPQIGVNKRMFAVRLQDGEDLLEFG--------------IYN 90
Query: 64 PEMKILDYKDKVTAL---EGCASL-KSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
P KI+ + + T L EGC S+ + ++ VPRY ++ L+G+D G P +G A
Sbjct: 91 P--KIISHSVEQTYLAGGEGCLSVDREVEGHVPRYMRITLSGIDHNGNPIKLRLKGLKAV 148
Query: 120 IIQHEMDHLDGLLFTDSMLPK 140
+ QHE DHLDG++F D + K
Sbjct: 149 VCQHEYDHLDGVMFYDRIDAK 169
>gi|387895261|ref|YP_006325558.1| peptide deformylase [Pseudomonas fluorescens A506]
gi|387161885|gb|AFJ57084.1| peptide deformylase [Pseudomonas fluorescens A506]
Length = 179
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + E P + IN
Sbjct: 33 LIDDMFQTMEHVGGVGLAAPQIGVDLQLVIFGF--------EASERYPEAPPVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G D G+P A+G+ AR++QH
Sbjct: 85 PLITPLSPVLE-EGYEGCLSVPGLRGAVNRYQQIRYEGFDPKGEPIVRFADGFHARVVQH 143
Query: 124 EMDHLDGLLFTDSM 137
E DHL G L+ +
Sbjct: 144 ECDHLIGRLYPSRI 157
>gi|325972108|ref|YP_004248299.1| peptide deformylase [Sphaerochaeta globus str. Buddy]
gi|324027346|gb|ADY14105.1| Peptide deformylase [Sphaerochaeta globus str. Buddy]
Length = 167
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 18/137 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++I++ M M D GL+APQVG+ RLF++ +Q +
Sbjct: 26 LRILVDAMFETMAEADGVGLAAPQVGVNSRLFVI-----------------HIQGSENRA 68
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INP++ I + T+ EGC S+ + V R +V + D GK + AEG AR
Sbjct: 69 YINPQI-IETSIETDTSEEGCLSIPGVWHDVQRPARVTVQAQDVEGKVFTVKAEGLLARA 127
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHE DHL+G+LF D +
Sbjct: 128 IQHEYDHLNGVLFIDRL 144
>gi|332876814|ref|ZP_08444571.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332685240|gb|EGJ58080.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 193
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGD-IKKFEM-QAFPHMVW 61
+I M M++ + GL+APQVG LRLF+ E+ E D I FE +
Sbjct: 30 LIANMWETMEKANGCGLAAPQVGKSLRLFVADSQLLYEAMDERDKIAYFEKGDTGIRRAF 89
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP++K L +++ EGC SL L KV R V+L+ +E + + T G AR+I
Sbjct: 90 INPQIKNLS-EEQWEEAEGCLSLPFLSGKVARSWSVELSYQNEQFETITETFSGMTARVI 148
Query: 122 QHEMDHLDGLLFTDSMLP 139
HE DHL+G+L+ D + P
Sbjct: 149 LHEYDHLEGILYIDRVKP 166
>gi|212695671|ref|ZP_03303799.1| hypothetical protein ANHYDRO_00188 [Anaerococcus hydrogenalis DSM
7454]
gi|212677344|gb|EEB36951.1| hypothetical protein ANHYDRO_00188 [Anaerococcus hydrogenalis DSM
7454]
Length = 162
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 18/136 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+KI++ M M + D GL+APQVGL R+ +V D +G IK
Sbjct: 37 IKILLDDMAETMYKADGVGLAAPQVGLLKRVIVVDIRD-----EDGLIK----------- 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NPE I++ + +EGC S+ + A V R V + LDE G+ AEG A
Sbjct: 81 LVNPE--IIEKDGEQVGVEGCLSVPNFNANVKRPAHVIVKYLDENGEEKKIEAEGLKAVA 138
Query: 121 IQHEMDHLDGLLFTDS 136
+ HE+DHL+G+LF D+
Sbjct: 139 LCHEIDHLNGVLFIDN 154
>gi|408369708|ref|ZP_11167488.1| peptide deformylase [Galbibacter sp. ck-I2-15]
gi|407744762|gb|EKF56329.1| peptide deformylase [Galbibacter sp. ck-I2-15]
Length = 196
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 8/148 (5%)
Query: 19 GLSAPQVGLPLRLFIV---AFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
GL+APQ+GLP+RLF++ F + +E SE ++ E A V+INP++ + +
Sbjct: 45 GLAAPQIGLPIRLFVIDTSPFAE-DEDLSE---QQREFLAGLKKVFINPKI-VQQTGEPW 99
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+ ++ V R ++++ LD +G AAR+IQHE DH++G+LFTD
Sbjct: 100 VFNEGCLSIPDVREDVSRCERIKIEYLDSEFNKVIEEYDGLAARVIQHEYDHIEGILFTD 159
Query: 136 SMLPKSLECVCWQDINLQNGLLELRYYM 163
+ + + ++ G + + Y M
Sbjct: 160 KLSSLKKRLLKGKLGSISKGKINVDYRM 187
>gi|387898151|ref|YP_006328447.1| formylmethionine deformylase [Bacillus amyloliquefaciens Y2]
gi|387172261|gb|AFJ61722.1| formylmethionine deformylase [Bacillus amyloliquefaciens Y2]
Length = 165
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 65/130 (50%), Gaps = 18/130 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M D GL+APQ+G+ R +V EES G I +NP
Sbjct: 40 MYDTMLEMDGVGLAAPQIGILKRAAVVDIG--EES---GRID-----------LVNP--V 81
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
IL+ + T +EGC S + V R V++ D GKP AEG+ AR +QHEMDH
Sbjct: 82 ILEKSGEQTGVEGCLSFPGVYGDVTRPDYVKVKAYDRKGKPFILEAEGFLARAVQHEMDH 141
Query: 128 LDGLLFTDSM 137
LDG+LFT +
Sbjct: 142 LDGILFTSKI 151
>gi|339628132|ref|YP_004719775.1| peptide deformylase [Sulfobacillus acidophilus TPY]
gi|339285921|gb|AEJ40032.1| peptide deformylase [Sulfobacillus acidophilus TPY]
Length = 190
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 18/120 (15%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
+G++APQ+G LR FI K +M+A P +++ NP KI+ ++
Sbjct: 40 YGIAAPQIGSSLRSFI--------------WKGKDMEA-PEVIY-NP--KIIRAYGELKD 81
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
+GC S+ + R V+LTGLD G+P EG+ ARIIQHE+DHLDG+LF D +
Sbjct: 82 YDGCLSVPGVYCPTRRAEVVELTGLDAEGRPIRRKYEGFDARIIQHEVDHLDGVLFIDRI 141
>gi|325105696|ref|YP_004275350.1| peptide deformylase [Pedobacter saltans DSM 12145]
gi|324974544|gb|ADY53528.1| peptide deformylase [Pedobacter saltans DSM 12145]
Length = 188
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHMVWI 62
+I M M + GL+APQ+GL +RLF++ A P +E S KK ++I
Sbjct: 30 LIENMFETMDNANGVGLAAPQIGLSIRLFVIDATPFADEDASLASFKK---------IFI 80
Query: 63 NPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
NP I D K EGC S+ ++ V R ++ ++ DE T G AAR+I
Sbjct: 81 NP--IITDESGKEWKFNEGCLSIPDIREDVSRKEQITISYFDENWIHHEDTFNGLAARVI 138
Query: 122 QHEMDHLDGLLFTD-------SMLPKSLECVCWQDIN 151
QHE DH+ G LFTD +ML L+ + ++N
Sbjct: 139 QHEYDHIQGKLFTDRISPLKKAMLKGKLDAIVKGNVN 175
>gi|410629537|ref|ZP_11340237.1| peptide deformylase [Glaciecola arctica BSs20135]
gi|410151022|dbj|GAC17104.1| peptide deformylase [Glaciecola arctica BSs20135]
Length = 169
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 17/136 (12%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M + M+ + GL+A QV + RL ++ E Q P MV+IN
Sbjct: 31 LISDMFDTMREENGIGLAATQVNVHKRLVVMDVS--------------ENQDNP-MVFIN 75
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE I + K + EGC S+ + A+V R K+ ++ LD+ G+P + A+G A IQH
Sbjct: 76 PE--ISHKEGKTISEEGCLSVPNNYAQVERAEKITVSALDKAGEPFTLEADGLLAICIQH 133
Query: 124 EMDHLDGLLFTDSMLP 139
E+DHL G LF D + P
Sbjct: 134 ELDHLKGKLFVDYLSP 149
>gi|333985556|ref|YP_004514766.1| peptide deformylase [Methylomonas methanica MC09]
gi|333809597|gb|AEG02267.1| Peptide deformylase [Methylomonas methanica MC09]
Length = 176
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
G++APQ+G ++ IVA P E + + EM +V +NP+ +I+D + +
Sbjct: 49 GIAAPQLGASWQIIIVA-SRPTERYPDAP----EMAP---VVVVNPQFQIMDNR-LIKDW 99
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ ++A VPRYR + + D G+P E + AR+ QHE DHL GL++ D +
Sbjct: 100 EGCLSVPGIRALVPRYRSIHVDYQDLNGQPRQTVLEDFPARVFQHEYDHLQGLVYLDRV 158
>gi|160901540|ref|YP_001567121.1| peptide deformylase [Petrotoga mobilis SJ95]
gi|160359184|gb|ABX30798.1| peptide deformylase [Petrotoga mobilis SJ95]
Length = 178
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 17/138 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ +M + M +D GL+APQVG+ LR FI+ D E +G V
Sbjct: 25 LKDVVDEMFSTMYLYDGVGLAAPQVGISLRFFIM---DSREENEKG-----------KKV 70
Query: 61 WINPEMKILDY-KDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
INPE I+++ ++V+ EGC S+ + V R V++ D +G G+ AR
Sbjct: 71 VINPE--IIEFLGEEVSFEEGCLSIPDIFEDVVRPEGVRVRYQDLSGNVIEEELHGYQAR 128
Query: 120 IIQHEMDHLDGLLFTDSM 137
I QHE DHL+G+LFTD +
Sbjct: 129 IFQHETDHLEGILFTDKL 146
>gi|21244235|ref|NP_643817.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
gi|25452915|sp|Q8PGV2.1|DEF1_XANAC RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|21109877|gb|AAM38353.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
Length = 171
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 11/150 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ M M GL+APQ+ + L+L + F D E + E A P
Sbjct: 28 LHTLVADMFETMDAARGVGLAAPQIAVDLQLMVFGF-DASERYPEA-------PAVPRTA 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
N +++ L +D EGC S+ L+A +PRYR ++ G G P AEG+ AR+
Sbjct: 80 LANAQIEPLS-EDMENGWEGCLSIPGLRAVIPRYRFIRYRGFAPDGSPIERDAEGFHARV 138
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDI 150
+QHE D+L G L+ + ++ + ++D+
Sbjct: 139 VQHEYDNLVGRLYPSRI--ENFDTFGFEDV 166
>gi|398310668|ref|ZP_10514142.1| peptide deformylase [Bacillus mojavensis RO-H-1]
Length = 160
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 66/130 (50%), Gaps = 18/130 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M D GL+APQ+G+ R +V EES G I +NPE
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVDIG--EES---GRID-----------LVNPE-- 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
IL+ + T +EGC S + +V R V++ + GKP A G+ AR +QHEMDH
Sbjct: 77 ILEQSGEQTGVEGCLSFPGVYGEVTRADYVKVRAYNRQGKPFILEARGFFARAVQHEMDH 136
Query: 128 LDGLLFTDSM 137
LDG+LFT +
Sbjct: 137 LDGVLFTSKI 146
>gi|317151959|ref|YP_004120007.1| peptide deformylase [Desulfovibrio aespoeensis Aspo-2]
gi|316942210|gb|ADU61261.1| peptide deformylase [Desulfovibrio aespoeensis Aspo-2]
Length = 165
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
MK +I M M D GL+APQVG +RL V P+ D++ V
Sbjct: 27 MKKLINDMVETMYEGDGVGLAAPQVGESIRLICVDQTGPK---LRADLR----------V 73
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE I++ +V + EGC S V R +V++TG+D G P +G+ A +
Sbjct: 74 LINPE--IVECDGEVESEEGCLSCPEFSGTVMRKERVKVTGMDPDGGPVCIDTDGFLAIV 131
Query: 121 IQHEMDHLDGLLFTD 135
+QHE+DHL+G+ D
Sbjct: 132 LQHEIDHLNGITIAD 146
>gi|254414456|ref|ZP_05028222.1| peptide deformylase [Coleofasciculus chthonoplastes PCC 7420]
gi|196178686|gb|EDX73684.1| peptide deformylase [Coleofasciculus chthonoplastes PCC 7420]
Length = 177
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 13/122 (10%)
Query: 18 FGLSAPQVGLPLRLFIVAF-PDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVT 76
G++APQ+ RLFIVA P+P + E A INP+ I+ + D+V
Sbjct: 47 VGIAAPQISQSCRLFIVASRPNPRYP----NAPTMEPTAM-----INPQ--IVAHSDQVV 95
Query: 77 -ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+ ++ VPRY+ +++ ++ GKP + ARI+QHE DHL+G++F D
Sbjct: 96 KGWEGCLSIPGIRGLVPRYQAIEVEYTNQEGKPQRQQLTDFVARIVQHEYDHLNGIVFVD 155
Query: 136 SM 137
+
Sbjct: 156 RV 157
>gi|56459130|ref|YP_154411.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR]
gi|81678352|sp|Q5QXI5.1|DEF_IDILO RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|56178140|gb|AAV80862.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR]
Length = 174
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 70/139 (50%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+A QV + RLF+ D E +E +V
Sbjct: 28 IRSVIDDMFETMYEEQGVGLAATQVDVHRRLFV---SDCSEDQNEP------------LV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INPE I + + EGC S + AKV R ++ +T LD+ G+ S +AEG A
Sbjct: 73 FINPE--ITEAEGHFKNDEGCLSFPGVYAKVERAERITVTALDKNGERFSRSAEGLLAIC 130
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHLDG LF D + P
Sbjct: 131 IQHEIDHLDGKLFVDYLSP 149
>gi|395651808|ref|ZP_10439658.1| peptide deformylase [Pseudomonas extremaustralis 14-3 substr.
14-3b]
Length = 179
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + + P + IN
Sbjct: 33 LIDDMFQTMEHVGGVGLAAPQIGVDLQLVIFGF--------EASERYPDAEPVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY++++ G D G+P A+G+ AR++QH
Sbjct: 85 PLITPLSPIME-EGFEGCLSVPGLRGAVNRYQQIRYEGFDPKGEPIVRFADGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|384265154|ref|YP_005420861.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
gi|380498507|emb|CCG49545.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
Length = 160
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 65/130 (50%), Gaps = 18/130 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M D GL+APQ+G+ R +V EES G I +NP
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVDIG--EES---GRID-----------LVNP--V 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
IL+ + T +EGC S + V R V++ D GKP AEG+ AR +QHEMDH
Sbjct: 77 ILEKSGEQTGVEGCLSFPGVYGDVTRPDYVKVKAYDRKGKPFILEAEGFLARAVQHEMDH 136
Query: 128 LDGLLFTDSM 137
LDG+LFT +
Sbjct: 137 LDGILFTSKI 146
>gi|374601036|ref|ZP_09674038.1| peptide deformylase [Myroides odoratus DSM 2801]
gi|423326172|ref|ZP_17304011.1| peptide deformylase [Myroides odoratimimus CIP 103059]
gi|373912506|gb|EHQ44355.1| peptide deformylase [Myroides odoratus DSM 2801]
gi|404604185|gb|EKB03821.1| peptide deformylase [Myroides odoratimimus CIP 103059]
Length = 195
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 8/163 (4%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIV---AFPDPEESFSEGDIKKFEMQAFPHMV 60
+I M + M GL+APQVGLP+RLF+V F + E++ E + E
Sbjct: 30 LIANMYDTMYSASGVGLAAPQVGLPIRLFVVDCAPFAEIEDNTPE----EKEFLTKYKRT 85
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+IN ++ I + ++ EGC S+ + V R ++ + DE + T G AAR+
Sbjct: 86 FINAKI-IKEEGEEWAFNEGCLSIPDVHELVVRKEQITIEYCDENFTKYTETINGLAARV 144
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
IQHE DH++G+LFTD + + + + N+ G + Y M
Sbjct: 145 IQHEYDHIEGILFTDKLSSLKKKLIAKRLKNIMEGKVFTDYKM 187
>gi|337754117|ref|YP_004646628.1| peptide deformylase [Francisella sp. TX077308]
gi|336445722|gb|AEI35028.1| Peptide deformylase [Francisella sp. TX077308]
Length = 172
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 15/133 (11%)
Query: 5 ILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINP 64
I +M+++M + GL+A QVG+ R FI+ E + + INP
Sbjct: 33 IAEMRDLMIEANGVGLAAVQVGIKKRFFIM-------------YDNLESETPETITIINP 79
Query: 65 EMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHE 124
E I+D K+ EGC S + AKV R +V++ L+E G+ + + AR IQHE
Sbjct: 80 E--IIDQSGKIIDEEGCLSFPGVSAKVNRATRVRIKALNEFGEEIEIEKDDFLARCIQHE 137
Query: 125 MDHLDGLLFTDSM 137
+DHL+G+ F D +
Sbjct: 138 IDHLNGVTFFDHL 150
>gi|114330947|ref|YP_747169.1| peptide deformylase [Nitrosomonas eutropha C91]
gi|114307961|gb|ABI59204.1| peptide deformylase [Nitrosomonas eutropha C91]
Length = 176
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M++ M + GL+APQ+G+ L++ I E + ++++ P V
Sbjct: 28 LKELLQDMQDTMAALNGAGLAAPQIGISLQVVIFGI--------EHSPRYPDVESVPFTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L +++ EGC S+ ++ VPRY ++ G+DET P T G+ AR+
Sbjct: 80 LINPILTPLT-EEQEEDWEGCLSIPGMRGLVPRYTHLRYQGVDETATPIDRTVAGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL+G+L+
Sbjct: 139 VQHECDHLNGILY 151
>gi|73748571|ref|YP_307810.1| peptide deformylase [Dehalococcoides sp. CBDB1]
gi|289432597|ref|YP_003462470.1| peptide deformylase [Dehalococcoides sp. GT]
gi|452203556|ref|YP_007483689.1| peptide deformylase [Dehalococcoides mccartyi DCMB5]
gi|123773670|sp|Q3ZXA9.1|DEF_DEHSC RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|73660287|emb|CAI82894.1| polypeptide deformylase [Dehalococcoides sp. CBDB1]
gi|288946317|gb|ADC74014.1| peptide deformylase [Dehalococcoides sp. GT]
gi|452110615|gb|AGG06347.1| peptide deformylase [Dehalococcoides mccartyi DCMB5]
Length = 167
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 18/137 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M D GL+APQVG+ LRL + PD +E+ V
Sbjct: 28 IQTLIDDMIETMNSADGAGLAAPQVGVSLRLVVFREPDTKEA----------------TV 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE+ + + +VT EGC S+ ++ R V GLD GK G A++
Sbjct: 72 LINPEIVKKEGQRQVT--EGCLSIPGYFGELTRAETVTAKGLDRHGKACRIKGTGIVAQL 129
Query: 121 IQHEMDHLDGLLFTDSM 137
++HE +HLDG+L+ D +
Sbjct: 130 LEHETEHLDGILYIDHL 146
>gi|225619787|ref|YP_002721044.1| N-formylmethionyl-tRNA deformylase [Brachyspira hyodysenteriae WA1]
gi|254767571|sp|C0QZQ2.1|DEF_BRAHW RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|225214606|gb|ACN83340.1| N-formylmethionyl-tRNA deformylase [Brachyspira hyodysenteriae WA1]
Length = 187
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 20/143 (13%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAF-PHMVWINPEMKILDYKDKVTA 77
GL+A Q+G+ RL +++ PD F + + F++ P ++W N E + L+
Sbjct: 45 GLAAVQIGVLKRLVVISVPD----FDDEEKPDFKLALINPEIIWHNDETESLE------- 93
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S ++ V RY ++++ LD G AE + A+++QHE+DH +G+ F D +
Sbjct: 94 -EGCLSFPEIRDDVARYTQIKVKYLDREGNEQILDAENYIAKVLQHEIDHTNGISFIDRL 152
Query: 138 LPKSLECVCWQDINLQNGLLELR 160
+Q L+ L ELR
Sbjct: 153 -------ESYQKRRLKRELKELR 168
>gi|297583895|ref|YP_003699675.1| peptide deformylase [Bacillus selenitireducens MLS10]
gi|297142352|gb|ADH99109.1| peptide deformylase [Bacillus selenitireducens MLS10]
Length = 194
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 28/144 (19%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQ+ + +F+V F+E D + EM ++NP KI+ + + T L
Sbjct: 60 GLAAPQINVSKNMFVV-------RFAEEDEEPIEM------TFVNP--KIISHSAETTHL 104
Query: 79 ---EGCASL-KSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFT 134
EGC S+ +S++ VPRY +V++ DE G + G+ A + QHE DHL+G++F
Sbjct: 105 PDGEGCLSVDRSVEGTVPRYSRVKVEATDENGHSFTIRLRGFFAIVFQHEFDHLNGIMFY 164
Query: 135 DSM---------LPKSLECVCWQD 149
D + +P +L+ + QD
Sbjct: 165 DRIDGDDPYKEDVPPALKVIRSQD 188
>gi|307729328|ref|YP_003906552.1| peptide deformylase [Burkholderia sp. CCGE1003]
gi|307583863|gb|ADN57261.1| peptide deformylase [Burkholderia sp. CCGE1003]
Length = 177
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
+I M M + GL+APQ+G+ L++ I F G +++ + P V I
Sbjct: 31 LIKDMFETMHDANGAGLAAPQIGVNLQVVIFGF---------GSNERYPDAPPVPETVLI 81
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP + + D EGC S+ L+ V R+ ++ G D+ GKP AEG+ AR++Q
Sbjct: 82 NPTITPVSL-DMEEGWEGCLSVPGLRGAVSRFSMIKYHGFDQYGKPIDRVAEGFHARVVQ 140
Query: 123 HEMDHLDGLLF 133
HE DHL G L+
Sbjct: 141 HECDHLIGKLY 151
>gi|282858813|ref|ZP_06267958.1| peptide deformylase [Prevotella bivia JCVIHMP010]
gi|424899101|ref|ZP_18322647.1| peptide deformylase [Prevotella bivia DSM 20514]
gi|282588382|gb|EFB93542.1| peptide deformylase [Prevotella bivia JCVIHMP010]
gi|388593315|gb|EIM33553.1| peptide deformylase [Prevotella bivia DSM 20514]
Length = 186
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 14/139 (10%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M D GL+APQ+G +R+ ++ ++F E + + H +IN
Sbjct: 30 LIQNMFETCSASDGVGLAAPQIGKSIRVVVIDLDVMSDAFPE-------YKDYKH-AFIN 81
Query: 64 PEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDET-GKPDSWTAEGWAARI 120
IL++ D T + EGC SL L KV R ++V + LDE D W +G+ AR+
Sbjct: 82 GH--ILEFDDTETEIMEEGCLSLPGLHEKVERAKRVHIEWLDENLQHHDEWV-DGFLARV 138
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE DHL+G +FTD + P
Sbjct: 139 IQHEFDHLEGKVFTDRVSP 157
>gi|428319570|ref|YP_007117452.1| Peptide deformylase [Oscillatoria nigro-viridis PCC 7112]
gi|428243250|gb|AFZ09036.1| Peptide deformylase [Oscillatoria nigro-viridis PCC 7112]
Length = 186
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ +M M D GL+APQVG+ + IV DPE A P +V
Sbjct: 41 IRQLVREMLQTMYSADGIGLAAPQVGV-HKQVIVLDCDPENP------------ATPPIV 87
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP +K D EGC S+ + +V R ++++ DE G+P + A+ +R
Sbjct: 88 LINPTIK-SSSSDICILQEGCLSIPGVYLEVKRPEVIEVSYRDEYGRPQTLIAKELLSRA 146
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHEMDHL+G+LF D +
Sbjct: 147 IQHEMDHLNGVLFVDRV 163
>gi|455647128|gb|EMF26114.1| polypeptide deformylase [Streptomyces gancidicus BKS 13-15]
Length = 181
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+A Q+G+PLR+F+ PD EE G + +NP + D V
Sbjct: 56 GLAANQIGVPLRVFVFDCPDDEEVRHLGHV-------------VNPRPVVTD-GVVVRGP 101
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC SL L+A RY + G TG+P + G+ AR +QHE DHL+G ++ D +
Sbjct: 102 EGCLSLPGLEAGTERYDHAVVEGFTVTGEPVTVHGTGFFARCLQHESDHLEGTVYADRL 160
>gi|429741019|ref|ZP_19274688.1| peptide deformylase [Porphyromonas catoniae F0037]
gi|429159688|gb|EKY02185.1| peptide deformylase [Porphyromonas catoniae F0037]
Length = 188
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 9/158 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M D GL+APQ+G +RLF++ +ESF E A +IN
Sbjct: 30 LIENMWETMYFSDGIGLAAPQIGRAIRLFVIDADPMKESFPEC--------ARLKQTFIN 81
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
+ + ++ + EGC S+ + +V R + + +D +P T G+AAR+IQH
Sbjct: 82 ARI-VERSEETCSENEGCLSIPGINERVTRPTTITIEYVDANFQPHRETYSGFAARVIQH 140
Query: 124 EMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
E DH++G+LF D + + + + N+ G + Y
Sbjct: 141 EYDHIEGILFIDQIAAIRKQLIKGKLSNMLKGKVSAHY 178
>gi|154685988|ref|YP_001421149.1| peptide deformylase [Bacillus amyloliquefaciens FZB42]
gi|429505123|ref|YP_007186307.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|154351839|gb|ABS73918.1| DefA [Bacillus amyloliquefaciens FZB42]
gi|429486713|gb|AFZ90637.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 160
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 65/130 (50%), Gaps = 18/130 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M D GL+APQ+G+ R +V EES G I +NP
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVDIG--EES---GRID-----------LVNP--V 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
IL+ + T +EGC S + V R V++ D GKP AEG+ AR +QHEMDH
Sbjct: 77 ILEKSGEQTGVEGCLSFPGVYGDVTRPDYVKVKAYDRKGKPFILEAEGFLARAVQHEMDH 136
Query: 128 LDGLLFTDSM 137
LDG+LFT +
Sbjct: 137 LDGILFTSKI 146
>gi|113868038|ref|YP_726527.1| peptide deformylase [Ralstonia eutropha H16]
gi|113526814|emb|CAJ93159.1| polypeptide or peptide deformylase [Ralstonia eutropha H16]
Length = 177
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M + M + GL+APQ+G+ L++ I F + + + + P V
Sbjct: 28 LRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVIFGF--------DRNPRYPDAPTVPKTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ ++ + EGC S+ L+ VPR+ +++ +G D G AEG+ AR+
Sbjct: 80 LINPVLE-MESDEMEDGWEGCLSVPGLRGVVPRHLRLKYSGHDLMGNRIERVAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 139 VQHECDHLQGILY 151
>gi|345303846|ref|YP_004825748.1| peptide deformylase [Rhodothermus marinus SG0.5JP17-172]
gi|345113079|gb|AEN73911.1| Peptide deformylase [Rhodothermus marinus SG0.5JP17-172]
Length = 189
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 71/131 (54%), Gaps = 7/131 (5%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAF-PDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
M M GL+APQVG R+F+V P EE +EG+ + P M +INPE+
Sbjct: 34 MVETMHAASGIGLAAPQVGRRERVFVVDLTPMKEELEAEGET----LPPMP-MFFINPEI 88
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
+ +++ + EGC S+ ++ V R V++ LD +P A G AR+IQHE D
Sbjct: 89 -VWTSEEQCSFEEGCLSIPDVREVVERPVAVRIRYLDRQFRPQELEARGMLARVIQHEYD 147
Query: 127 HLDGLLFTDSM 137
HL+G+LF D +
Sbjct: 148 HLEGVLFIDHI 158
>gi|334340865|ref|YP_004545845.1| peptide deformylase [Desulfotomaculum ruminis DSM 2154]
gi|334092219|gb|AEG60559.1| peptide deformylase [Desulfotomaculum ruminis DSM 2154]
Length = 152
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 20/118 (16%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQ+G+ R+ +V EG I+ INP+ IL+ K
Sbjct: 45 VGLAAPQIGVSKRVIVV-------DIGEGLIE-----------LINPQ--ILEAAGKAVD 84
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+ + +V R ++ L GL+ GK ++ G AR+ QHE+DHL+G++F D
Sbjct: 85 TEGCLSVPGMVGEVARAERIVLKGLNRKGKEVTYRVRGLLARVFQHELDHLEGIVFVD 142
>gi|239986135|ref|ZP_04706799.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL
11379]
Length = 181
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M GL+A Q+G+PL++F+ PD ++ G + +N
Sbjct: 41 LIEDMFATMYAAQGVGLAANQIGVPLKVFVYDCPDDDDVRHLGHV-------------VN 87
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE+ D V EGC SL L+A R+ + GL TG+P GW AR +QH
Sbjct: 88 PELVEADGL-TVRGPEGCLSLPGLEAGTERFDHAVVEGLTMTGEPVRIAGTGWFARCLQH 146
Query: 124 EMDHLDGLLFTDSM 137
E DHL+G ++ D +
Sbjct: 147 ECDHLEGTVYPDRL 160
>gi|15605076|ref|NP_219861.1| peptide deformylase [Chlamydia trachomatis D/UW-3/CX]
gi|76789079|ref|YP_328165.1| peptide deformylase [Chlamydia trachomatis A/HAR-13]
gi|166154565|ref|YP_001654683.1| peptide deformylase [Chlamydia trachomatis 434/Bu]
gi|166155440|ref|YP_001653695.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|237802778|ref|YP_002887972.1| peptide deformylase [Chlamydia trachomatis B/Jali20/OT]
gi|237804700|ref|YP_002888854.1| peptide deformylase [Chlamydia trachomatis B/TZ1A828/OT]
gi|255311158|ref|ZP_05353728.1| peptide deformylase [Chlamydia trachomatis 6276]
gi|255317459|ref|ZP_05358705.1| peptide deformylase [Chlamydia trachomatis 6276s]
gi|255506935|ref|ZP_05382574.1| peptide deformylase [Chlamydia trachomatis D(s)2923]
gi|301335828|ref|ZP_07224072.1| peptide deformylase [Chlamydia trachomatis L2tet1]
gi|339626023|ref|YP_004717502.1| peptide deformylase [Chlamydia trachomatis L2c]
gi|376282359|ref|YP_005156185.1| peptide deformylase [Chlamydia trachomatis A2497]
gi|385239867|ref|YP_005807709.1| peptide deformylase [Chlamydia trachomatis G/9768]
gi|385240790|ref|YP_005808631.1| peptide deformylase [Chlamydia trachomatis G/11222]
gi|385242643|ref|YP_005810482.1| peptide deformylase [Chlamydia trachomatis G/9301]
gi|385246253|ref|YP_005815075.1| peptide deformylase [Chlamydia trachomatis G/11074]
gi|389858045|ref|YP_006360287.1| peptide deformylase [Chlamydia trachomatis F/SW4]
gi|389859797|ref|YP_006362037.1| peptide deformylase [Chlamydia trachomatis F/SW5]
gi|6831532|sp|O84357.1|DEF_CHLTR RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|123606946|sp|Q3KM05.1|DEF_CHLTA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238687417|sp|B0B7S2.1|DEF_CHLT2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238687475|sp|B0BBY7.1|DEF_CHLTB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|3328774|gb|AAC67948.1| Polypeptide Deformylase [Chlamydia trachomatis D/UW-3/CX]
gi|76167609|gb|AAX50617.1| peptide deformylase [Chlamydia trachomatis A/HAR-13]
gi|83033878|gb|ABB97392.1| polypeptide deformylase [Chlamydia trachomatis]
gi|83033880|gb|ABB97393.1| polypeptide deformylase [Chlamydia trachomatis]
gi|165930553|emb|CAP04048.1| peptide deformylase [Chlamydia trachomatis 434/Bu]
gi|165931428|emb|CAP07002.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|231273000|emb|CAX09912.1| peptide deformylase [Chlamydia trachomatis B/TZ1A828/OT]
gi|231274012|emb|CAX10805.1| peptide deformylase [Chlamydia trachomatis B/Jali20/OT]
gi|296435872|gb|ADH18046.1| peptide deformylase [Chlamydia trachomatis G/9768]
gi|296436798|gb|ADH18968.1| peptide deformylase [Chlamydia trachomatis G/11222]
gi|296437732|gb|ADH19893.1| peptide deformylase [Chlamydia trachomatis G/11074]
gi|297140231|gb|ADH96989.1| peptide deformylase [Chlamydia trachomatis G/9301]
gi|339461132|gb|AEJ77635.1| peptide deformylase [Chlamydia trachomatis L2c]
gi|371908389|emb|CAX09018.1| peptide deformylase [Chlamydia trachomatis A2497]
gi|380249117|emb|CCE14409.1| peptide deformylase [Chlamydia trachomatis F/SW5]
gi|380249992|emb|CCE13520.1| peptide deformylase [Chlamydia trachomatis F/SW4]
gi|438690279|emb|CCP49536.1| peptide deformylase [Chlamydia trachomatis A/7249]
gi|438691363|emb|CCP48637.1| peptide deformylase [Chlamydia trachomatis A/5291]
gi|438692736|emb|CCP47738.1| peptide deformylase [Chlamydia trachomatis A/363]
gi|440525270|emb|CCP50521.1| peptide deformylase [Chlamydia trachomatis K/SotonK1]
gi|440526157|emb|CCP51641.1| peptide deformylase [Chlamydia trachomatis L2b/8200/07]
gi|440527055|emb|CCP52539.1| peptide deformylase [Chlamydia trachomatis D/SotonD1]
gi|440527946|emb|CCP53430.1| peptide deformylase [Chlamydia trachomatis D/SotonD5]
gi|440528837|emb|CCP54321.1| peptide deformylase [Chlamydia trachomatis D/SotonD6]
gi|440531519|emb|CCP57029.1| peptide deformylase [Chlamydia trachomatis F/SotonF3]
gi|440532411|emb|CCP57921.1| peptide deformylase [Chlamydia trachomatis G/SotonG1]
gi|440533304|emb|CCP58814.1| peptide deformylase [Chlamydia trachomatis Ia/SotonIa1]
gi|440534198|emb|CCP59708.1| peptide deformylase [Chlamydia trachomatis Ia/SotonIa3]
gi|440535982|emb|CCP61495.1| peptide deformylase [Chlamydia trachomatis L2b/795]
gi|440536874|emb|CCP62388.1| peptide deformylase [Chlamydia trachomatis L1/440/LN]
gi|440537764|emb|CCP63278.1| peptide deformylase [Chlamydia trachomatis L1/1322/p2]
gi|440538654|emb|CCP64168.1| peptide deformylase [Chlamydia trachomatis L1/115]
gi|440539543|emb|CCP65057.1| peptide deformylase [Chlamydia trachomatis L1/224]
gi|440540434|emb|CCP65948.1| peptide deformylase [Chlamydia trachomatis L2/25667R]
gi|440541323|emb|CCP66837.1| peptide deformylase [Chlamydia trachomatis L3/404/LN]
gi|440542210|emb|CCP67724.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-2]
gi|440543101|emb|CCP68615.1| peptide deformylase [Chlamydia trachomatis L2b/Canada2]
gi|440543992|emb|CCP69506.1| peptide deformylase [Chlamydia trachomatis L2b/LST]
gi|440544882|emb|CCP70396.1| peptide deformylase [Chlamydia trachomatis L2b/Ams1]
gi|440545772|emb|CCP71286.1| peptide deformylase [Chlamydia trachomatis L2b/CV204]
gi|440914034|emb|CCP90451.1| peptide deformylase [Chlamydia trachomatis L2b/Ams2]
gi|440914924|emb|CCP91341.1| peptide deformylase [Chlamydia trachomatis L2b/Ams3]
gi|440915816|emb|CCP92233.1| peptide deformylase [Chlamydia trachomatis L2b/Canada1]
gi|440916710|emb|CCP93127.1| peptide deformylase [Chlamydia trachomatis L2b/Ams4]
gi|440917600|emb|CCP94017.1| peptide deformylase [Chlamydia trachomatis L2b/Ams5]
Length = 181
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 12/142 (8%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++L M M + GL+APQVG + LFI+ E +G++ + FP V
Sbjct: 27 LRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIMGV---ERELEDGELVFCD---FPR-V 79
Query: 61 WINPEMKILDYKDK--VTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
+INP ++ K + V EGC S+ L+ +V R K+ ++ + G+ S EG+ A
Sbjct: 80 FINP---VITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAKNLDGQQFSLALEGFLA 136
Query: 119 RIIQHEMDHLDGLLFTDSMLPK 140
RI+ HE DHL G+L+ D M K
Sbjct: 137 RIVMHETDHLHGVLYIDRMSDK 158
>gi|407713939|ref|YP_006834504.1| peptide deformylase [Burkholderia phenoliruptrix BR3459a]
gi|407236123|gb|AFT86322.1| peptide deformylase [Burkholderia phenoliruptrix BR3459a]
Length = 177
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
+I M M + GL+APQ+G+ L++ I F G +++ + P V I
Sbjct: 31 LIKDMFETMHDANGAGLAAPQIGVNLQVVIFGF---------GSNERYPDAPPVPETVLI 81
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP + + D EGC S+ L+ V R+ ++ G D+ GKP AEG+ AR++Q
Sbjct: 82 NPTITPVSL-DMEEGWEGCLSVPGLRGAVSRFSMIKYHGFDQYGKPIDRVAEGFHARVVQ 140
Query: 123 HEMDHLDGLLF 133
HE DHL G L+
Sbjct: 141 HECDHLIGKLY 151
>gi|331269019|ref|YP_004395511.1| peptide deformylase [Clostridium botulinum BKT015925]
gi|329125569|gb|AEB75514.1| peptide deformylase [Clostridium botulinum BKT015925]
Length = 159
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 24/148 (16%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I +K+ + D GL+APQ+G+ R FI+ D ++ +N
Sbjct: 31 LIQDLKDTLYSADGVGLAAPQIGVLKRAFIIDLRD----------------GNGPLILLN 74
Query: 64 PEM--KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
P++ KI Y+D EGC S + V R RKV ++G++E G+ + A G AR I
Sbjct: 75 PKILKKIGKYEDG----EGCLSYPGYEGIVVRPRKVIVSGINEKGESAQYEATGLMARAI 130
Query: 122 QHEMDHLDGLLFTDSMLPKSLECVCWQD 149
HE DHLDG+L+ D L K + + QD
Sbjct: 131 CHETDHLDGILYMD--LAKKMYKIPIQD 156
>gi|254526876|ref|ZP_05138928.1| peptide deformylase [Prochlorococcus marinus str. MIT 9202]
gi|221538300|gb|EEE40753.1| peptide deformylase [Prochlorococcus marinus str. MIT 9202]
Length = 201
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 16/124 (12%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ L ++ DI FE A ++ INPE I Y + +
Sbjct: 72 IGLAAPQVGISKELLVI------------DIN-FEDSAAEPLILINPE--ITAYGSTLNS 116
Query: 78 LE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
E GC S+ + V R ++L DE G+P A+G AR IQHE+DHL G+LF D
Sbjct: 117 YEEGCLSIPGVYLNVIRPSTIKLKFRDEMGRPRKMNADGLLARCIQHEVDHLKGVLFVDR 176
Query: 137 MLPK 140
+ K
Sbjct: 177 VTSK 180
>gi|313681059|ref|YP_004058798.1| peptide deformylase [Oceanithermus profundus DSM 14977]
gi|313153774|gb|ADR37625.1| peptide deformylase [Oceanithermus profundus DSM 14977]
Length = 199
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 4/132 (3%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHM-VWINPEM 66
M M + GL+APQVGL RLF+ A EE +E D ++ A ++ V +NP
Sbjct: 35 MVETMFEYGGVGLAAPQVGLSRRLFVAAEYALEEEEAEADEEERPKSALRNLYVMVNP-- 92
Query: 67 KILDYKDKVTALEGCASLKSLQAK-VPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEM 125
+I + EGC S+ + + VPR ++++ D TG P + AEG+ AR+IQHE+
Sbjct: 93 RITHREGTQVGTEGCLSIPGVYSDDVPRDLQIRVEYQDVTGAPRTLEAEGYLARVIQHEL 152
Query: 126 DHLDGLLFTDSM 137
DHL+G+LF D +
Sbjct: 153 DHLEGVLFLDRI 164
>gi|401680099|ref|ZP_10812023.1| peptide deformylase [Veillonella sp. ACP1]
gi|400219226|gb|EJO50097.1| peptide deformylase [Veillonella sp. ACP1]
Length = 162
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 18/135 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
M+ +I M + M + + GL+APQV + R+ +V ++ G I
Sbjct: 28 MRALIEDMADTMYKTEGVGLAAPQVNVSKRIIVV-----DDHAGSGLI-----------A 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE I+ + LEGC S+ V R+ KV +TG+D K AEG+ ARI
Sbjct: 72 LINPE--IIHGEGSQIGLEGCLSVPGYFGDVERFEKVTVTGIDPHNKKVMIKAEGFLARI 129
Query: 121 IQHEMDHLDGLLFTD 135
QHE+DHL+G LF +
Sbjct: 130 FQHEIDHLEGHLFIE 144
>gi|260591629|ref|ZP_05857087.1| peptide deformylase [Prevotella veroralis F0319]
gi|383811036|ref|ZP_09966514.1| peptide deformylase [Prevotella sp. oral taxon 306 str. F0472]
gi|260536429|gb|EEX19046.1| peptide deformylase [Prevotella veroralis F0319]
gi|383356323|gb|EID33829.1| peptide deformylase [Prevotella sp. oral taxon 306 str. F0472]
Length = 186
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 16 DLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
D GL+APQ+G +R+ ++ ++F E + F H +IN + D +
Sbjct: 42 DGVGLAAPQIGKSIRVVVIDLDVLSDTFPE-------YKGFRH-AFINGHILEFDDSETE 93
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
T EGC SL + V R +++ + +DE EG+ AR+IQHE DHLDG +FTD
Sbjct: 94 TLEEGCLSLPGIHESVTRAKRIYVKYVDENLVEHEEWIEGYLARVIQHEFDHLDGKVFTD 153
Query: 136 SMLP 139
+ P
Sbjct: 154 HLSP 157
>gi|255348717|ref|ZP_05380724.1| peptide deformylase [Chlamydia trachomatis 70]
gi|255503257|ref|ZP_05381647.1| peptide deformylase [Chlamydia trachomatis 70s]
gi|385241723|ref|YP_005809563.1| peptide deformylase [Chlamydia trachomatis E/11023]
gi|385245330|ref|YP_005814153.1| peptide deformylase [Chlamydia trachomatis E/150]
gi|386262706|ref|YP_005815985.1| peptide deformylase [Chlamydia trachomatis Sweden2]
gi|389858921|ref|YP_006361162.1| peptide deformylase [Chlamydia trachomatis E/SW3]
gi|289525394|emb|CBJ14871.1| peptide deformylase [Chlamydia trachomatis Sweden2]
gi|296434946|gb|ADH17124.1| peptide deformylase [Chlamydia trachomatis E/150]
gi|296438666|gb|ADH20819.1| peptide deformylase [Chlamydia trachomatis E/11023]
gi|380250870|emb|CCE12631.1| peptide deformylase [Chlamydia trachomatis E/SW3]
gi|440529729|emb|CCP55213.1| peptide deformylase [Chlamydia trachomatis E/SotonE4]
gi|440530628|emb|CCP56112.1| peptide deformylase [Chlamydia trachomatis E/SotonE8]
gi|440535096|emb|CCP60606.1| peptide deformylase [Chlamydia trachomatis E/Bour]
Length = 181
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 12/142 (8%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++L M M + GL+APQVG + LFI+ E +G++ + FP V
Sbjct: 27 LRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIMGV---ERELEDGELVFCD---FPR-V 79
Query: 61 WINPEMKILDYKDK--VTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
+INP ++ K + V EGC S+ L+ +V R K+ ++ + G+ S EG+ A
Sbjct: 80 FINP---VITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAKNLDGQQFSLALEGFLA 136
Query: 119 RIIQHEMDHLDGLLFTDSMLPK 140
RI+ HE DHL G+L+ D M K
Sbjct: 137 RIVMHETDHLHGVLYIDRMSDK 158
>gi|194439835|ref|ZP_03071900.1| peptide deformylase [Escherichia coli 101-1]
gi|420389187|ref|ZP_14888462.1| peptide deformylase [Escherichia coli EPEC C342-62]
gi|422784428|ref|ZP_16837209.1| peptide deformylase [Escherichia coli TW10509]
gi|194421225|gb|EDX37247.1| peptide deformylase [Escherichia coli 101-1]
gi|323974492|gb|EGB69619.1| peptide deformylase [Escherichia coli TW10509]
gi|391315777|gb|EIQ73299.1| peptide deformylase [Escherichia coli EPEC C342-62]
Length = 169
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+A QV + R+ ++ D E+ E +V INPE+ L+ +
Sbjct: 45 IGLAATQVDIHQRIIVI---DVSENRDE------------RLVLINPEL--LEKSGETGI 87
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ +A VPR KV++ LD GKP AEG A IQHEMDHL G LF D +
Sbjct: 88 EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEAEGLLAICIQHEMDHLVGKLFMDYL 147
Query: 138 LP 139
P
Sbjct: 148 SP 149
>gi|256544906|ref|ZP_05472277.1| peptide deformylase [Anaerococcus vaginalis ATCC 51170]
gi|256399405|gb|EEU13011.1| peptide deformylase [Anaerococcus vaginalis ATCC 51170]
Length = 154
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 18/136 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+KI++ M M + D GL+APQVGL R+ +V D +G IK
Sbjct: 28 IKILLDDMAETMYKADGVGLAAPQVGLLKRVIVVDVRD-----EDGLIK----------- 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NPE I++ + +EGC S+ + A V R V + LDE G AEG A
Sbjct: 72 LVNPE--IIEKDGEQVGVEGCLSVPNFNANVKRPAHVVVKYLDENGDEKKIEAEGLKAVA 129
Query: 121 IQHEMDHLDGLLFTDS 136
+ HE+DHL+G+LF D+
Sbjct: 130 LCHEIDHLNGILFIDN 145
>gi|24114564|ref|NP_709074.1| peptide deformylase [Shigella flexneri 2a str. 301]
gi|30064608|ref|NP_838779.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
gi|74313805|ref|YP_312224.1| peptide deformylase [Shigella sonnei Ss046]
gi|110807134|ref|YP_690654.1| peptide deformylase [Shigella flexneri 5 str. 8401]
gi|170680840|ref|YP_001745549.1| peptide deformylase [Escherichia coli SMS-3-5]
gi|218702049|ref|YP_002409678.1| peptide deformylase [Escherichia coli IAI39]
gi|260857407|ref|YP_003231298.1| peptide deformylase [Escherichia coli O26:H11 str. 11368]
gi|260870029|ref|YP_003236431.1| peptide deformylase [Escherichia coli O111:H- str. 11128]
gi|300935284|ref|ZP_07150295.1| peptide deformylase [Escherichia coli MS 21-1]
gi|331674794|ref|ZP_08375551.1| peptide deformylase [Escherichia coli TA280]
gi|331684929|ref|ZP_08385515.1| peptide deformylase [Escherichia coli H299]
gi|383180460|ref|YP_005458465.1| peptide deformylase [Shigella sonnei 53G]
gi|384544868|ref|YP_005728932.1| putative N-formylmethionyl-tRNA deformylase [Shigella flexneri
2002017]
gi|386626090|ref|YP_006145818.1| peptide deformylase [Escherichia coli O7:K1 str. CE10]
gi|414578067|ref|ZP_11435239.1| peptide deformylase [Shigella sonnei 3233-85]
gi|415787651|ref|ZP_11494198.1| peptide deformylase [Escherichia coli EPECa14]
gi|415820329|ref|ZP_11509518.1| peptide deformylase [Escherichia coli OK1180]
gi|415851174|ref|ZP_11527923.1| peptide deformylase [Shigella sonnei 53G]
gi|417127236|ref|ZP_11974727.1| peptide deformylase [Escherichia coli 97.0246]
gi|417197594|ref|ZP_12016528.1| peptide deformylase [Escherichia coli 4.0522]
gi|417211259|ref|ZP_12021676.1| peptide deformylase [Escherichia coli JB1-95]
gi|417296370|ref|ZP_12083617.1| peptide deformylase [Escherichia coli 900105 (10e)]
gi|417593689|ref|ZP_12244378.1| peptide deformylase [Escherichia coli 2534-86]
gi|417704343|ref|ZP_12353441.1| peptide deformylase [Shigella flexneri K-218]
gi|417715256|ref|ZP_12364200.1| peptide deformylase [Shigella flexneri K-272]
gi|417719191|ref|ZP_12368080.1| peptide deformylase [Shigella flexneri K-227]
gi|417725941|ref|ZP_12374720.1| peptide deformylase [Shigella flexneri K-304]
gi|417731222|ref|ZP_12379901.1| peptide deformylase [Shigella flexneri K-671]
gi|417735351|ref|ZP_12383996.1| peptide deformylase [Shigella flexneri 2747-71]
gi|418252663|ref|ZP_12878216.1| peptide deformylase [Shigella flexneri 6603-63]
gi|418268753|ref|ZP_12887422.1| peptide deformylase [Shigella sonnei str. Moseley]
gi|419205498|ref|ZP_13748661.1| peptide deformylase [Escherichia coli DEC8B]
gi|419211747|ref|ZP_13754814.1| peptide deformylase [Escherichia coli DEC8C]
gi|419217687|ref|ZP_13760681.1| peptide deformylase [Escherichia coli DEC8D]
gi|419223436|ref|ZP_13766348.1| peptide deformylase [Escherichia coli DEC8E]
gi|419228909|ref|ZP_13771750.1| peptide deformylase [Escherichia coli DEC9A]
gi|419234502|ref|ZP_13777270.1| peptide deformylase [Escherichia coli DEC9B]
gi|419241077|ref|ZP_13783767.1| peptide deformylase [Escherichia coli DEC9C]
gi|419245355|ref|ZP_13787988.1| peptide deformylase [Escherichia coli DEC9D]
gi|419251216|ref|ZP_13793784.1| peptide deformylase [Escherichia coli DEC9E]
gi|419256908|ref|ZP_13799408.1| peptide deformylase [Escherichia coli DEC10A]
gi|419263895|ref|ZP_13806297.1| peptide deformylase [Escherichia coli DEC10B]
gi|419275371|ref|ZP_13817654.1| peptide deformylase [Escherichia coli DEC10D]
gi|419286204|ref|ZP_13828367.1| peptide deformylase [Escherichia coli DEC10F]
gi|419878380|ref|ZP_14399852.1| peptide deformylase [Escherichia coli O111:H11 str. CVM9534]
gi|419879806|ref|ZP_14401230.1| peptide deformylase [Escherichia coli O111:H11 str. CVM9545]
gi|419891907|ref|ZP_14411947.1| peptide deformylase [Escherichia coli O111:H8 str. CVM9570]
gi|419897529|ref|ZP_14417113.1| peptide deformylase [Escherichia coli O111:H8 str. CVM9574]
gi|419904398|ref|ZP_14423398.1| peptide deformylase [Escherichia coli O26:H11 str. CVM9942]
gi|419906933|ref|ZP_14425790.1| peptide deformylase [Escherichia coli O26:H11 str. CVM10026]
gi|420090404|ref|ZP_14602173.1| peptide deformylase [Escherichia coli O111:H8 str. CVM9602]
gi|420096498|ref|ZP_14607867.1| peptide deformylase [Escherichia coli O111:H8 str. CVM9634]
gi|420104545|ref|ZP_14615236.1| peptide deformylase [Escherichia coli O111:H11 str. CVM9455]
gi|420111240|ref|ZP_14621084.1| peptide deformylase [Escherichia coli O111:H11 str. CVM9553]
gi|420117572|ref|ZP_14626928.1| hypothetical protein ECO10021_28897 [Escherichia coli O26:H11 str.
CVM10021]
gi|420123473|ref|ZP_14632363.1| peptide deformylase [Escherichia coli O26:H11 str. CVM10030]
gi|420126555|ref|ZP_14635290.1| peptide deformylase [Escherichia coli O26:H11 str. CVM10224]
gi|420135675|ref|ZP_14643755.1| peptide deformylase [Escherichia coli O26:H11 str. CVM9952]
gi|420322254|ref|ZP_14824077.1| peptide deformylase [Shigella flexneri 2850-71]
gi|420334130|ref|ZP_14835758.1| peptide deformylase [Shigella flexneri K-1770]
gi|420360636|ref|ZP_14861590.1| peptide deformylase [Shigella sonnei 3226-85]
gi|422831892|ref|ZP_16880023.1| peptide deformylase [Escherichia coli B093]
gi|424748550|ref|ZP_18176690.1| peptide deformylase [Escherichia coli O26:H11 str. CFSAN001629]
gi|424766949|ref|ZP_18194286.1| peptide deformylase [Escherichia coli O111:H11 str. CFSAN001630]
gi|424769951|ref|ZP_18197167.1| peptide deformylase [Escherichia coli O111:H8 str. CFSAN001632]
gi|424839519|ref|ZP_18264156.1| peptide deformylase [Shigella flexneri 5a str. M90T]
gi|425381566|ref|ZP_18765563.1| peptide deformylase [Escherichia coli EC1865]
gi|432545017|ref|ZP_19781851.1| peptide deformylase [Escherichia coli KTE236]
gi|432550499|ref|ZP_19787258.1| peptide deformylase [Escherichia coli KTE237]
gi|432618523|ref|ZP_19854627.1| peptide deformylase [Escherichia coli KTE75]
gi|432623641|ref|ZP_19859658.1| peptide deformylase [Escherichia coli KTE76]
gi|432682018|ref|ZP_19917376.1| peptide deformylase [Escherichia coli KTE143]
gi|432817048|ref|ZP_20050808.1| peptide deformylase [Escherichia coli KTE115]
gi|450193527|ref|ZP_21892034.1| peptide deformylase [Escherichia coli SEPT362]
gi|39930879|sp|Q83PZ1.1|DEF_SHIFL RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|122957164|sp|Q0T016.1|DEF_SHIF8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|123773439|sp|Q3YWX3.1|DEF_SHISS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|254767584|sp|B7NLK6.1|DEF_ECO7I RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|254767588|sp|B1LGP3.1|DEF_ECOSM RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|24053759|gb|AAN44781.1| peptide deformylase [Shigella flexneri 2a str. 301]
gi|30042867|gb|AAP18590.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
gi|73857282|gb|AAZ89989.1| peptide deformylase [Shigella sonnei Ss046]
gi|110616682|gb|ABF05349.1| peptide deformylase [Shigella flexneri 5 str. 8401]
gi|170518558|gb|ACB16736.1| peptide deformylase [Escherichia coli SMS-3-5]
gi|218372035|emb|CAR19895.1| peptide deformylase [Escherichia coli IAI39]
gi|257756056|dbj|BAI27558.1| peptide deformylase [Escherichia coli O26:H11 str. 11368]
gi|257766385|dbj|BAI37880.1| peptide deformylase [Escherichia coli O111:H- str. 11128]
gi|281602655|gb|ADA75639.1| putative N-formylmethionyl-tRNA deformylase [Shigella flexneri
2002017]
gi|300459487|gb|EFK22980.1| peptide deformylase [Escherichia coli MS 21-1]
gi|323154124|gb|EFZ40327.1| peptide deformylase [Escherichia coli EPECa14]
gi|323164851|gb|EFZ50642.1| peptide deformylase [Shigella sonnei 53G]
gi|323179177|gb|EFZ64751.1| peptide deformylase [Escherichia coli OK1180]
gi|331067703|gb|EGI39101.1| peptide deformylase [Escherichia coli TA280]
gi|331077300|gb|EGI48512.1| peptide deformylase [Escherichia coli H299]
gi|332749605|gb|EGJ80022.1| peptide deformylase [Shigella flexneri K-671]
gi|332753999|gb|EGJ84372.1| peptide deformylase [Shigella flexneri 2747-71]
gi|332996761|gb|EGK16386.1| peptide deformylase [Shigella flexneri K-272]
gi|332998313|gb|EGK17913.1| peptide deformylase [Shigella flexneri K-218]
gi|333012534|gb|EGK31915.1| peptide deformylase [Shigella flexneri K-304]
gi|333014514|gb|EGK33862.1| peptide deformylase [Shigella flexneri K-227]
gi|345333276|gb|EGW65727.1| peptide deformylase [Escherichia coli 2534-86]
gi|349739826|gb|AEQ14532.1| peptide deformylase [Escherichia coli O7:K1 str. CE10]
gi|371615974|gb|EHO04350.1| peptide deformylase [Escherichia coli B093]
gi|378044952|gb|EHW07362.1| peptide deformylase [Escherichia coli DEC8B]
gi|378049980|gb|EHW12314.1| peptide deformylase [Escherichia coli DEC8C]
gi|378058534|gb|EHW20742.1| peptide deformylase [Escherichia coli DEC8D]
gi|378061877|gb|EHW24056.1| peptide deformylase [Escherichia coli DEC8E]
gi|378069747|gb|EHW31832.1| peptide deformylase [Escherichia coli DEC9A]
gi|378074637|gb|EHW36671.1| peptide deformylase [Escherichia coli DEC9B]
gi|378076294|gb|EHW38302.1| peptide deformylase [Escherichia coli DEC9C]
gi|378087340|gb|EHW49200.1| peptide deformylase [Escherichia coli DEC9D]
gi|378091042|gb|EHW52876.1| peptide deformylase [Escherichia coli DEC9E]
gi|378097466|gb|EHW59218.1| peptide deformylase [Escherichia coli DEC10A]
gi|378101114|gb|EHW62803.1| peptide deformylase [Escherichia coli DEC10B]
gi|378112472|gb|EHW74051.1| peptide deformylase [Escherichia coli DEC10D]
gi|378126834|gb|EHW88227.1| peptide deformylase [Escherichia coli DEC10F]
gi|383468571|gb|EID63592.1| peptide deformylase [Shigella flexneri 5a str. M90T]
gi|386144539|gb|EIG91005.1| peptide deformylase [Escherichia coli 97.0246]
gi|386188899|gb|EIH77688.1| peptide deformylase [Escherichia coli 4.0522]
gi|386195863|gb|EIH90098.1| peptide deformylase [Escherichia coli JB1-95]
gi|386259814|gb|EIJ15288.1| peptide deformylase [Escherichia coli 900105 (10e)]
gi|388335448|gb|EIL02013.1| peptide deformylase [Escherichia coli O111:H11 str. CVM9534]
gi|388348763|gb|EIL14334.1| peptide deformylase [Escherichia coli O111:H8 str. CVM9570]
gi|388355173|gb|EIL20032.1| peptide deformylase [Escherichia coli O111:H8 str. CVM9574]
gi|388367679|gb|EIL31345.1| peptide deformylase [Escherichia coli O26:H11 str. CVM9942]
gi|388370639|gb|EIL34156.1| peptide deformylase [Escherichia coli O111:H11 str. CVM9545]
gi|388377853|gb|EIL40633.1| peptide deformylase [Escherichia coli O26:H11 str. CVM10026]
gi|391243175|gb|EIQ02471.1| peptide deformylase [Shigella flexneri K-1770]
gi|391246044|gb|EIQ05308.1| peptide deformylase [Shigella flexneri 2850-71]
gi|391278403|gb|EIQ37110.1| peptide deformylase [Shigella sonnei 3226-85]
gi|391282215|gb|EIQ40851.1| peptide deformylase [Shigella sonnei 3233-85]
gi|394385813|gb|EJE63329.1| peptide deformylase [Escherichia coli O111:H8 str. CVM9602]
gi|394388309|gb|EJE65591.1| peptide deformylase [Escherichia coli O111:H8 str. CVM9634]
gi|394392138|gb|EJE68933.1| peptide deformylase [Escherichia coli O26:H11 str. CVM10224]
gi|394398836|gb|EJE74973.1| peptide deformylase [Escherichia coli O111:H11 str. CVM9553]
gi|394401965|gb|EJE77729.1| hypothetical protein ECO10021_28897 [Escherichia coli O26:H11 str.
CVM10021]
gi|394403983|gb|EJE79471.1| peptide deformylase [Escherichia coli O111:H11 str. CVM9455]
gi|394417013|gb|EJE90771.1| peptide deformylase [Escherichia coli O26:H11 str. CVM10030]
gi|394419733|gb|EJE93315.1| peptide deformylase [Escherichia coli O26:H11 str. CVM9952]
gi|397896429|gb|EJL12848.1| peptide deformylase [Shigella sonnei str. Moseley]
gi|397902165|gb|EJL18494.1| peptide deformylase [Shigella flexneri 6603-63]
gi|408294308|gb|EKJ12708.1| peptide deformylase [Escherichia coli EC1865]
gi|421933186|gb|EKT90979.1| peptide deformylase [Escherichia coli O111:H11 str. CFSAN001630]
gi|421943104|gb|EKU00396.1| peptide deformylase [Escherichia coli O111:H8 str. CFSAN001632]
gi|421944157|gb|EKU01418.1| peptide deformylase [Escherichia coli O26:H11 str. CFSAN001629]
gi|431071844|gb|ELD79601.1| peptide deformylase [Escherichia coli KTE236]
gi|431077401|gb|ELD84652.1| peptide deformylase [Escherichia coli KTE237]
gi|431151574|gb|ELE52587.1| peptide deformylase [Escherichia coli KTE75]
gi|431156569|gb|ELE57236.1| peptide deformylase [Escherichia coli KTE76]
gi|431217565|gb|ELF15131.1| peptide deformylase [Escherichia coli KTE143]
gi|431361451|gb|ELG48032.1| peptide deformylase [Escherichia coli KTE115]
gi|449317420|gb|EMD07509.1| peptide deformylase [Escherichia coli SEPT362]
Length = 169
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+A QV + R+ ++ D E+ E +V INPE+ L+ +
Sbjct: 45 IGLAATQVDIHQRIIVI---DVSENRDE------------RLVLINPEL--LEKSGETGI 87
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ +A VPR KV++ LD GKP AEG A IQHEMDHL G LF D +
Sbjct: 88 EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEAEGLLAICIQHEMDHLVGKLFMDYL 147
Query: 138 LP 139
P
Sbjct: 148 SP 149
>gi|116670740|ref|YP_831673.1| peptide deformylase [Arthrobacter sp. FB24]
gi|116610849|gb|ABK03573.1| Peptide deformylase [Arthrobacter sp. FB24]
Length = 226
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 71/148 (47%), Gaps = 16/148 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPH-- 58
+ +I M+ VM GL+APQ+G+PL+L ++ E+ + D+ E A H
Sbjct: 55 LAALIALMREVMHDAPGVGLAAPQLGIPLQLAVL-----EDQY---DVDA-ETAAVRHRS 105
Query: 59 ----MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAE 114
INP L EGC SL+ LQA V R+ V+L D G
Sbjct: 106 PLEFFAVINPSYSPLG-TGTAAFYEGCLSLQGLQAVVSRHETVRLDFTDPGGTRRQQDFF 164
Query: 115 GWAARIIQHEMDHLDGLLFTDSMLPKSL 142
GW ARI+QHE DHL G+L+ D +SL
Sbjct: 165 GWQARIVQHEADHLQGILYVDKAELRSL 192
>gi|323526493|ref|YP_004228646.1| peptide deformylase [Burkholderia sp. CCGE1001]
gi|323383495|gb|ADX55586.1| peptide deformylase [Burkholderia sp. CCGE1001]
Length = 177
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
+I M M + GL+APQ+G+ L++ I F G +++ + P V I
Sbjct: 31 LIKDMFETMHDANGAGLAAPQIGVNLQVVIFGF---------GSNERYPDAPPVPETVLI 81
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP + + D EGC S+ L+ V R+ ++ G D+ GKP AEG+ AR++Q
Sbjct: 82 NPTITPVSL-DMEEGWEGCLSVPGLRGAVSRFSMIKYHGFDQYGKPIDRVAEGFHARVVQ 140
Query: 123 HEMDHLDGLLF 133
HE DHL G L+
Sbjct: 141 HECDHLIGKLY 151
>gi|170692137|ref|ZP_02883300.1| peptide deformylase [Burkholderia graminis C4D1M]
gi|170142567|gb|EDT10732.1| peptide deformylase [Burkholderia graminis C4D1M]
Length = 177
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
+I M M + GL+APQ+G+ L++ I F G +++ + P V I
Sbjct: 31 LIKDMFETMHDANGAGLAAPQIGVNLQVVIFGF---------GSNERYPDAPPVPETVLI 81
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP + + D EGC S+ L+ V R+ ++ G D+ GKP AEG+ AR++Q
Sbjct: 82 NPTITPVSL-DMEEGWEGCLSVPGLRGAVSRFSMIKYHGFDQYGKPIDRVAEGFHARVVQ 140
Query: 123 HEMDHLDGLLF 133
HE DHL G L+
Sbjct: 141 HECDHLIGKLY 151
>gi|157412419|ref|YP_001483285.1| peptide deformylase [Prochlorococcus marinus str. MIT 9215]
gi|157386994|gb|ABV49699.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
MIT 9215]
Length = 201
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 16/124 (12%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ L ++ DI FE A ++ INPE I Y + +
Sbjct: 72 IGLAAPQVGISKELLVI------------DIN-FEDSAAEPLILINPE--ITAYGSTLNS 116
Query: 78 LE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
E GC S+ + V R ++L DE G+P A+G AR IQHE+DHL G+LF D
Sbjct: 117 YEEGCLSIPGVYLNVIRPSTIKLKFRDEMGRPRKMNADGLLARCIQHEVDHLKGVLFVDR 176
Query: 137 MLPK 140
+ K
Sbjct: 177 VTSK 180
>gi|427431601|ref|ZP_18920944.1| Peptide deformylase [Caenispirillum salinarum AK4]
gi|425877749|gb|EKV26480.1| Peptide deformylase [Caenispirillum salinarum AK4]
Length = 185
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 10/130 (7%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M+ + GL+APQV +PLR+ I P + + P +N
Sbjct: 32 LVRDMEETLADAGGVGLAAPQVHVPLRVVIFHVPG---------GRTEDGTPVPLTALVN 82
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE++ L ++ V EGC S+ ++ VPR ++++ G+ G A G+ AR++QH
Sbjct: 83 PEIEAL-TEETVEGWEGCLSIPAMTGMVPRAKRIRYKGITPAGGVIEREASGFHARVVQH 141
Query: 124 EMDHLDGLLF 133
E DHLD LL+
Sbjct: 142 ECDHLDALLY 151
>gi|408673453|ref|YP_006873201.1| Peptide deformylase [Emticicia oligotrophica DSM 17448]
gi|387855077|gb|AFK03174.1| Peptide deformylase [Emticicia oligotrophica DSM 17448]
Length = 191
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
Query: 19 GLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQ+G+ +R+F+V P E + ++ DI + V+IN E+ I + ++
Sbjct: 45 GLAAPQIGMDIRVFVVDGTPINESAETDEDIDPSLIDF--KKVFINAEI-IEESGEEWAY 101
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ ++A V R V++ D EG AARIIQHE DH+DG+LFTD +
Sbjct: 102 EEGCLSIPGVRADVYRPEFVKIRYFDTDWNEHIEDYEGMAARIIQHEYDHIDGILFTDHL 161
Query: 138 LPKSLECVCWQDINLQNGLLELRYYM 163
+ + + N+ G +++ Y M
Sbjct: 162 SSLKKQMLKKKLTNITKGEVDVDYRM 187
>gi|147669331|ref|YP_001214149.1| peptide deformylase [Dehalococcoides sp. BAV1]
gi|452204991|ref|YP_007485120.1| peptide deformylase [Dehalococcoides mccartyi BTF08]
gi|189083069|sp|A5FRA7.1|DEF_DEHSB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|146270279|gb|ABQ17271.1| peptide deformylase [Dehalococcoides sp. BAV1]
gi|452112047|gb|AGG07778.1| peptide deformylase [Dehalococcoides mccartyi BTF08]
Length = 167
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 18/137 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M D GL+APQVG+ LRL + PD +E+ V
Sbjct: 28 IQTLIDDMIETMNSADGAGLAAPQVGVSLRLVVFREPDTKEA----------------TV 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE+ + + +VT EGC S+ ++ R V GLD GK G A++
Sbjct: 72 LINPEIIKKEGQRQVT--EGCLSIPGYFGELTRAETVTAKGLDRHGKACRIKGTGIVAQL 129
Query: 121 IQHEMDHLDGLLFTDSM 137
++HE +HLDG+L+ D +
Sbjct: 130 LEHETEHLDGILYIDHL 146
>gi|383767493|ref|YP_005446475.1| peptide deformylase [Phycisphaera mikurensis NBRC 102666]
gi|381387762|dbj|BAM04578.1| peptide deformylase [Phycisphaera mikurensis NBRC 102666]
Length = 172
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 69/138 (50%), Gaps = 20/138 (14%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVW 61
+ + +M +M GL+APQVGLP RLF+ + S EGD V+
Sbjct: 33 RAVARRMIELMHAAPGVGLAAPQVGLPWRLFVANW-----SGDEGD----------DHVF 77
Query: 62 INPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
NP +L TA EGC SL +Q +V R R+V + + G+ TA G+ AR
Sbjct: 78 FNP---VLSDASAATAAKEEGCLSLPEVQVEVTRPREVTIRAVGLDGEAFQRTASGFPAR 134
Query: 120 IIQHEMDHLDGLLFTDSM 137
+ QHE DHLDG++ D M
Sbjct: 135 VWQHECDHLDGVMILDKM 152
>gi|338531594|ref|YP_004664928.1| peptide deformylase [Myxococcus fulvus HW-1]
gi|337257690|gb|AEI63850.1| peptide deformylase [Myxococcus fulvus HW-1]
Length = 171
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 19/134 (14%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ QM MK + G++A QVG PLR+ +V D FE+ +N
Sbjct: 33 LLEQMAESMKEAEGIGIAANQVGEPLRVALVGREDG---------TYFEI--------VN 75
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P+ IL+ K+ VT EGC S+ K PR+ KV++ D+ + AEG A ++QH
Sbjct: 76 PQ--ILEKKEPVTMEEGCLSVPREWEKCPRFHKVKVRYQDKAAEWHELEAEGRLAHVLQH 133
Query: 124 EMDHLDGLLFTDSM 137
E+DHLDG +F D +
Sbjct: 134 EIDHLDGHVFVDHL 147
>gi|189466358|ref|ZP_03015143.1| hypothetical protein BACINT_02733 [Bacteroides intestinalis DSM
17393]
gi|189434622|gb|EDV03607.1| peptide deformylase [Bacteroides intestinalis DSM 17393]
Length = 184
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +I M M + GL+APQVGLP+R+ +V E + E K F
Sbjct: 27 LKELIANMFETMDNAEGVGLAAPQVGLPVRVVVVDLDVLSEDYPE--YKGFRK------A 78
Query: 61 WINPEMKILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+INP IL+ ++V+ EGC SL + V R K+ +T +DE EG+ AR
Sbjct: 79 YINPH--ILEVSGEEVSMEEGCLSLPGIHEAVKRGNKIHVTYMDEDMVEHDEIVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHL+G +F D + P
Sbjct: 137 VMQHEFDHLEGKMFIDHLSP 156
>gi|390945604|ref|YP_006409364.1| peptide deformylase [Alistipes finegoldii DSM 17242]
gi|390422173|gb|AFL76679.1| peptide deformylase [Alistipes finegoldii DSM 17242]
Length = 196
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 16/120 (13%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
G++APQVG+ RL V ++F+ P ++NPE+ + +
Sbjct: 88 GIAAPQVGVSRRLIAV--------------QRFDKPGEPFECYVNPEI-VGRSATRSAGR 132
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETG-KPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ V R ++ L LDET +P + T EG+ A I QHE+DHLDG+LF D M
Sbjct: 133 EGCLSVPETSGTVLRADRIVLRYLDETTMRPVTDTVEGFTAVIFQHEIDHLDGVLFIDRM 192
>gi|379007765|ref|YP_005257216.1| peptide deformylase [Sulfobacillus acidophilus DSM 10332]
gi|361054027|gb|AEW05544.1| peptide deformylase [Sulfobacillus acidophilus DSM 10332]
Length = 196
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 18/120 (15%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
+G++APQ+G LR FI K +M+A P +++ NP KI+ ++
Sbjct: 46 YGIAAPQIGSSLRSFI--------------WKGKDMEA-PEVIY-NP--KIIRAYGELKD 87
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
+GC S+ + R V+LTGLD G+P EG+ ARIIQHE+DHLDG+LF D +
Sbjct: 88 YDGCLSVPGVYCPTRRAEVVELTGLDAEGRPIRRKYEGFDARIIQHEVDHLDGVLFIDRI 147
>gi|325270161|ref|ZP_08136768.1| peptide deformylase [Prevotella multiformis DSM 16608]
gi|324987462|gb|EGC19438.1| peptide deformylase [Prevotella multiformis DSM 16608]
Length = 186
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 16 DLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
D GL+APQ+G +R+ ++ ++F E + F H +IN + LD +
Sbjct: 42 DGVGLAAPQIGKSVRVVVIDLDVLSDTFPE-------YKDFRH-AFINGHILELDDSETE 93
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
T EGC SL + V R +++ + LDE K +G+ AR+IQHE DHL+G +FTD
Sbjct: 94 TMEEGCLSLPGIHESVTRAKRIHVKYLDEHLKEHDEWVDGYLARVIQHEFDHLEGRVFTD 153
Query: 136 SM 137
+
Sbjct: 154 RL 155
>gi|17230571|ref|NP_487119.1| peptide deformylase [Nostoc sp. PCC 7120]
gi|23396564|sp|Q8YSK6.1|DEF1_ANASP RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|17132173|dbj|BAB74778.1| polypeptide deformylase [Nostoc sp. PCC 7120]
Length = 187
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M D GL+APQVG+ +L ++ +P+ A P ++ IN
Sbjct: 44 LIRDMLQTMYSSDGIGLAAPQVGINKQLIVIDC-EPDNP------------ANPPLILIN 90
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P +K + ++ +A EGC S+ + V R V++ DE G+P + A R IQH
Sbjct: 91 PTIKQVS-REICSAQEGCLSIPGVYMDVKRPEVVEVAYKDENGRPQTLKATDLLGRCIQH 149
Query: 124 EMDHLDGLLFTDSM 137
EMDHL+G++F D +
Sbjct: 150 EMDHLNGVVFVDRV 163
>gi|385652701|ref|ZP_10047254.1| N-formylmethionyl-tRNA deformylase [Leucobacter chromiiresistens JG
31]
Length = 187
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQVG+ R+F+ + + EE+ G E+ WI+P + +D+V
Sbjct: 46 GLAAPQVGIGKRVFVWMYDEQEEAAPRGVAINPEL-------WISPPEPGIPGEDEV--- 95
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
EGC S + + R + L D GKP TA GW ARI+QHE DHL GLL+ D ++
Sbjct: 96 EGCLSFPGERFALRRSPRALLRAQDIDGKPFEITASGWFARILQHEYDHLSGLLYVDRLV 155
>gi|416028708|ref|ZP_11571625.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
gi|422404428|ref|ZP_16481481.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
gi|320327457|gb|EFW83470.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
gi|330877286|gb|EGH11435.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 179
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + GL+APQ+G+ L+L I F E + + +A P +
Sbjct: 30 LNTLIADMFETIHSVGGVGLAAPQIGIDLQLVIFGFERSE--------RYPQAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L + EGC S+ L+ V RY+ ++ G D G+P A G+ AR+
Sbjct: 82 LLNPLITPLSPSLE-EGWEGCLSVPGLRGMVNRYQSIRYEGFDPEGQPVERVAHGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|145631964|ref|ZP_01787717.1| hypothetical protein CGSHi22421_05742 [Haemophilus influenzae
R3021]
gi|386266649|ref|YP_005830141.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2846]
gi|144982378|gb|EDJ89955.1| hypothetical protein CGSHi22421_05742 [Haemophilus influenzae
R3021]
gi|309973885|gb|ADO97086.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2846]
Length = 169
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I+ M + M + GL+APQV + R+ + EGD + V
Sbjct: 28 IRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDV--------EGDKQN-------QFV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE IL + + EGC S+ +A VPR KV + LD GK + A+G A
Sbjct: 73 LINPE--ILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLDADGLLAIC 130
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHL+G+LF D + P
Sbjct: 131 IQHEIDHLNGILFVDYLSP 149
>gi|296270495|ref|YP_003653127.1| peptide deformylase [Thermobispora bispora DSM 43833]
gi|296093282|gb|ADG89234.1| peptide deformylase [Thermobispora bispora DSM 43833]
Length = 162
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 71/147 (48%), Gaps = 26/147 (17%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I +M VM D GL+ PQ+G+ R+F+ DI +
Sbjct: 26 LRRLIDEMFQVMYAADGVGLAGPQIGVGKRVFVY------------DIVNRKGHV----- 68
Query: 61 WINPEMKILDYKDKVTALEGCASL------KSLQAKVPRYRKVQLTGLDETGKPDSWTAE 114
+NPE+ I D +++ A EGC S+ K L A PR V L G D G+P + A
Sbjct: 69 -VNPELTI-DDPEQIVAEEGCLSVPSKETGKPLYAPTPRAAGVTLRGFDRLGRPITVKAR 126
Query: 115 GWAARIIQHEMDHLDGLLFTDSMLPKS 141
G AR QHE DHL+G L+ D LPK
Sbjct: 127 GMLARCFQHEFDHLNGTLYVDR-LPKE 152
>gi|336324430|ref|YP_004604397.1| peptide deformylase [Flexistipes sinusarabici DSM 4947]
gi|336108011|gb|AEI15829.1| Peptide deformylase [Flexistipes sinusarabici DSM 4947]
Length = 169
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 63/120 (52%), Gaps = 15/120 (12%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ RL ++ +E + K E INPE +L+Y+ + T
Sbjct: 44 VGLAAPQVGIDKRLVVMDI------TAEDEPPKLEK-------LINPE--VLEYEGEQTG 88
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC SL A V R ++ +DE G A G AR+IQHE+DHLDG+LF D +
Sbjct: 89 EEGCLSLPGEYADVKRAEWIRYKYIDENGDEHLQEATGLRARVIQHEVDHLDGILFIDKL 148
>gi|415857094|ref|ZP_11531923.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
gi|417709368|ref|ZP_12358391.1| peptide deformylase [Shigella flexneri VA-6]
gi|417741101|ref|ZP_12389665.1| peptide deformylase [Shigella flexneri 4343-70]
gi|417743805|ref|ZP_12392334.1| peptide deformylase [Shigella flexneri 2930-71]
gi|417829792|ref|ZP_12476335.1| peptide deformylase [Shigella flexneri J1713]
gi|419198992|ref|ZP_13742286.1| peptide deformylase [Escherichia coli DEC8A]
gi|420365309|ref|ZP_14866176.1| peptide deformylase [Shigella sonnei 4822-66]
gi|420375829|ref|ZP_14875653.1| peptide deformylase [Shigella flexneri 1235-66]
gi|313648791|gb|EFS13231.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
gi|332749748|gb|EGJ80163.1| peptide deformylase [Shigella flexneri 4343-70]
gi|332766530|gb|EGJ96737.1| peptide deformylase [Shigella flexneri 2930-71]
gi|332998300|gb|EGK17901.1| peptide deformylase [Shigella flexneri VA-6]
gi|335573684|gb|EGM60028.1| peptide deformylase [Shigella flexneri J1713]
gi|378044149|gb|EHW06570.1| peptide deformylase [Escherichia coli DEC8A]
gi|391292338|gb|EIQ50674.1| peptide deformylase [Shigella sonnei 4822-66]
gi|391309300|gb|EIQ66974.1| peptide deformylase [Shigella flexneri 1235-66]
Length = 164
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+A QV + R+ ++ D E+ E +V INPE+ L+ +
Sbjct: 40 IGLAATQVDIHQRIIVI---DVSENRDE------------RLVLINPEL--LEKSGETGI 82
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ +A VPR KV++ LD GKP AEG A IQHEMDHL G LF D +
Sbjct: 83 EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEAEGLLAICIQHEMDHLVGKLFMDYL 142
Query: 138 LP 139
P
Sbjct: 143 SP 144
>gi|237654289|ref|YP_002890603.1| peptide deformylase [Thauera sp. MZ1T]
gi|237625536|gb|ACR02226.1| peptide deformylase [Thauera sp. MZ1T]
Length = 174
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 21/152 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I + + M GL+APQ+G+ L++ I F E + + P +
Sbjct: 29 LAALIEDLFDTMAAHGGVGLAAPQIGVGLQVVIFGFERSE--------RYPDAAPVPRTI 80
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + L +++ EGC S+ L+ VPR +++ TG G+P AEG+ AR+
Sbjct: 81 LLNPVIVPLT-EEREEGWEGCLSVPGLRGMVPRATRIRYTGYTPAGEPIERFAEGFHARV 139
Query: 121 IQHEMDHLDGLL------------FTDSMLPK 140
+QHE DHL G+L FTD + P+
Sbjct: 140 VQHECDHLAGVLYPMRVRDFRRFGFTDVLFPE 171
>gi|145633869|ref|ZP_01789590.1| peptide deformylase [Haemophilus influenzae 3655]
gi|145635938|ref|ZP_01791624.1| peptide deformylase [Haemophilus influenzae PittAA]
gi|229845579|ref|ZP_04465706.1| peptide deformylase [Haemophilus influenzae 6P18H1]
gi|144985241|gb|EDJ92084.1| peptide deformylase [Haemophilus influenzae 3655]
gi|145266797|gb|EDK06815.1| peptide deformylase [Haemophilus influenzae PittAA]
gi|229811514|gb|EEP47216.1| peptide deformylase [Haemophilus influenzae 6P18H1]
Length = 169
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I+ M + M + GL+APQV + R+ + EGD + V
Sbjct: 28 IRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDV--------EGDKQN-------QFV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE IL + + EGC S+ +A VPR KV + LD GK + A+G A
Sbjct: 73 LINPE--ILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLDADGLLAIC 130
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHL+G+LF D + P
Sbjct: 131 IQHEIDHLNGILFVDYLSP 149
>gi|349685670|ref|ZP_08896812.1| peptide deformylase [Gluconacetobacter oboediens 174Bp2]
Length = 176
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++ M M GL+APQV LRLF+ P S E D +
Sbjct: 29 IRTLVADMIETMLDAGGVGLAAPQVHQGLRLFVYRVPA-TRSSGEDDPPRLPA------A 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ +D + V +EGC S+ L+ VPRYR++ G + G+ A G+ A +
Sbjct: 82 LINPVLEPVD-DEMVDRMEGCLSIPGLRGWVPRYRRIAWRGTNADGQETHGIASGFLANV 140
Query: 121 IQHEMDHLDGLLF 133
QHE DHL+G+L+
Sbjct: 141 FQHEYDHLNGILY 153
>gi|113474637|ref|YP_720698.1| peptide deformylase [Trichodesmium erythraeum IMS101]
gi|110165685|gb|ABG50225.1| peptide deformylase [Trichodesmium erythraeum IMS101]
Length = 187
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
M+ ++ +M M D GL+APQV + ++ ++ D E + S A P +V
Sbjct: 41 MRKLVREMLQTMYTADGIGLAAPQVNVQKQVIVI---DCEPTNS----------ATPPLV 87
Query: 61 WINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
INP +K Y + + EGC S+ + V R ++++ DE G+P + A+ +R
Sbjct: 88 LINPTIK--KYSNDICLFQEGCLSIPGVYLDVQRPSEIEVAYKDENGRPQTLQAQELLSR 145
Query: 120 IIQHEMDHLDGLLFTDSM 137
IQHEMDHL G+LF D +
Sbjct: 146 AIQHEMDHLQGILFVDRV 163
>gi|452852680|ref|YP_007494364.1| Peptide deformylase [Desulfovibrio piezophilus]
gi|451896334|emb|CCH49213.1| Peptide deformylase [Desulfovibrio piezophilus]
Length = 165
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M D GL+APQVG +RL V P+ GD++ V IN
Sbjct: 30 LIENMIETMYESDGVGLAAPQVGESIRLICVDQSGPK---LRGDLR----------VLIN 76
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE I++ +V + EGC S L V R +V++ LD G +G+ A I+QH
Sbjct: 77 PE--IVECDGQVDSEEGCLSCPELNVTVKRKERVKVNALDREGNEICLETDGFLAIILQH 134
Query: 124 EMDHLDGLLFTD 135
E+DHLDG+ D
Sbjct: 135 EIDHLDGVTLAD 146
>gi|68249189|ref|YP_248301.1| peptide deformylase [Haemophilus influenzae 86-028NP]
gi|145629886|ref|ZP_01785678.1| peptide deformylase [Haemophilus influenzae 22.1-21]
gi|145637962|ref|ZP_01793602.1| peptide deformylase [Haemophilus influenzae PittHH]
gi|145639368|ref|ZP_01794973.1| peptide deformylase [Haemophilus influenzae PittII]
gi|145642285|ref|ZP_01797850.1| peptide deformylase [Haemophilus influenzae R3021]
gi|148826745|ref|YP_001291498.1| peptide deformylase [Haemophilus influenzae PittEE]
gi|148827778|ref|YP_001292531.1| peptide deformylase [Haemophilus influenzae PittGG]
gi|229846679|ref|ZP_04466787.1| peptide deformylase [Haemophilus influenzae 7P49H1]
gi|378696821|ref|YP_005178779.1| peptide deformylase [Haemophilus influenzae 10810]
gi|417841177|ref|ZP_12487282.1| Peptide deformylase [Haemophilus haemolyticus M19501]
gi|417841947|ref|ZP_12488042.1| Peptide deformylase [Haemophilus haemolyticus M19501]
gi|81336405|sp|Q4QMV6.1|DEF_HAEI8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|166198517|sp|A5UEB4.1|DEF_HAEIE RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|166198518|sp|A5UH92.1|DEF_HAEIG RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|68057388|gb|AAX87641.1| peptide deformylase [Haemophilus influenzae 86-028NP]
gi|144977740|gb|EDJ87687.1| peptide deformylase [Haemophilus influenzae 22.1-21]
gi|145268853|gb|EDK08816.1| peptide deformylase [Haemophilus influenzae PittHH]
gi|145271415|gb|EDK11327.1| peptide deformylase [Haemophilus influenzae PittII]
gi|145273041|gb|EDK12922.1| peptide deformylase [Haemophilus influenzae 22.4-21]
gi|148716905|gb|ABQ99115.1| peptide deformylase [Haemophilus influenzae PittEE]
gi|148719020|gb|ABR00148.1| hypothetical protein CGSHiGG_06235 [Haemophilus influenzae PittGG]
gi|229810772|gb|EEP46490.1| peptide deformylase [Haemophilus influenzae 7P49H1]
gi|301169340|emb|CBW28939.1| peptide deformylase [Haemophilus influenzae 10810]
gi|309751783|gb|ADO81767.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2866]
gi|341947727|gb|EGT74368.1| Peptide deformylase [Haemophilus haemolyticus M19501]
gi|341949771|gb|EGT76372.1| Peptide deformylase [Haemophilus haemolyticus M19501]
Length = 169
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I+ M + M + GL+APQV + R+ + EGD + V
Sbjct: 28 IRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDV--------EGDKQN-------QFV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE IL + + EGC S+ +A VPR KV + LD GK + A+G A
Sbjct: 73 LINPE--ILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLDADGLLAIC 130
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHL+G+LF D + P
Sbjct: 131 IQHEIDHLNGILFVDYLSP 149
>gi|399006834|ref|ZP_10709354.1| peptide deformylase [Pseudomonas sp. GM17]
gi|398121492|gb|EJM11120.1| peptide deformylase [Pseudomonas sp. GM17]
Length = 179
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGF--------EHSERYPQAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY+ ++ G+D G+P A G+ AR++QH
Sbjct: 85 PLITPLSPVLE-EGWEGCLSVPGLRGAVERYQHIRYEGVDPRGEPIVRVASGFHARVVQH 143
Query: 124 EMDHLDGLLFTDSM 137
E DHL G L+ +
Sbjct: 144 ECDHLIGRLYPSRI 157
>gi|284031594|ref|YP_003381525.1| peptide deformylase [Kribbella flavida DSM 17836]
gi|283810887|gb|ADB32726.1| peptide deformylase [Kribbella flavida DSM 17836]
Length = 201
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 15/136 (11%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M M + GL+A QVG+ L+LF+ PD + +G V N
Sbjct: 38 LVADMVATMNAAEGVGLAANQVGVDLQLFVFDCPDRDGVRHQG-------------VVCN 84
Query: 64 PEMKILDYKDKV--TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
P++++ + KD+ EGC SL K R ++TG+DE G P S+ G AR +
Sbjct: 85 PKLELPEGKDRHLDEGEEGCLSLPGAFTKCARPDYAKVTGVDEHGNPVSYEGNGLLARCL 144
Query: 122 QHEMDHLDGLLFTDSM 137
QHE DH G++F D +
Sbjct: 145 QHETDHTQGMVFGDRL 160
>gi|443327819|ref|ZP_21056427.1| peptide deformylase [Xenococcus sp. PCC 7305]
gi|442792548|gb|ELS02027.1| peptide deformylase [Xenococcus sp. PCC 7305]
Length = 187
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 14/131 (10%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
+M M D GL+APQVG+ +L +V + + P +V INP++
Sbjct: 47 EMLQTMYSQDGIGLAAPQVGVNKQLIVVDC-------------ELDKPDSPPLVLINPKI 93
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
K +A EGC S+ + V R ++++ DE GKP A+ AR+IQHEMD
Sbjct: 94 -TRSSKQICSAEEGCLSIPGVYLDVTRPEAIEVSFKDENGKPRKIQAKDLLARVIQHEMD 152
Query: 127 HLDGLLFTDSM 137
HL+G++F D +
Sbjct: 153 HLNGVMFVDRV 163
>gi|421728649|ref|ZP_16167801.1| peptide deformylase [Klebsiella oxytoca M5al]
gi|410370558|gb|EKP25287.1| peptide deformylase [Klebsiella oxytoca M5al]
Length = 169
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 17/122 (13%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+A QV + R+ ++ + E +V INPE+ L+ +
Sbjct: 45 IGLAATQVDIHQRIIVIDVSENREE---------------QLVLINPEL--LEKSGETGI 87
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ +A VPR KV++ LD GKP A+G A IQHEMDHL G LF D +
Sbjct: 88 EEGCLSIPEQRALVPRAEKVKIRALDREGKPYELEADGLLAICIQHEMDHLVGKLFIDYL 147
Query: 138 LP 139
P
Sbjct: 148 SP 149
>gi|319897841|ref|YP_004136038.1| peptide deformylase [Haemophilus influenzae F3031]
gi|317433347|emb|CBY81725.1| peptide deformylase [Haemophilus influenzae F3031]
Length = 169
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I+ M + M + GL+APQV + R+ + EGD + V
Sbjct: 28 IRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDV--------EGDKQN-------QFV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE IL + + EGC S+ +A VPR KV + LD GK + A+G A
Sbjct: 73 LINPE--ILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLDADGLLAIC 130
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHL+G+LF D + P
Sbjct: 131 IQHEIDHLNGILFVDYLSP 149
>gi|319775435|ref|YP_004137923.1| peptide deformylase [Haemophilus influenzae F3047]
gi|329122537|ref|ZP_08251120.1| peptide deformylase [Haemophilus aegyptius ATCC 11116]
gi|317450026|emb|CBY86240.1| peptide deformylase [Haemophilus influenzae F3047]
gi|327473142|gb|EGF18566.1| peptide deformylase [Haemophilus aegyptius ATCC 11116]
Length = 169
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I+ M + M + GL+APQV + R+ + EGD + V
Sbjct: 28 IRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDV--------EGDKQN-------QFV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE IL + + EGC S+ +A VPR KV + LD GK + A+G A
Sbjct: 73 LINPE--ILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLDADGLLAIC 130
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHL+G+LF D + P
Sbjct: 131 IQHEIDHLNGILFVDYLSP 149
>gi|283783592|ref|YP_003374346.1| peptide deformylase [Gardnerella vaginalis 409-05]
gi|415717654|ref|ZP_11466953.1| peptide deformylase [Gardnerella vaginalis 1500E]
gi|415725780|ref|ZP_11470331.1| peptide deformylase [Gardnerella vaginalis 00703Dmash]
gi|415728829|ref|ZP_11472167.1| peptide deformylase [Gardnerella vaginalis 6119V5]
gi|283442075|gb|ADB14541.1| peptide deformylase [Gardnerella vaginalis 409-05]
gi|388060731|gb|EIK83411.1| peptide deformylase [Gardnerella vaginalis 1500E]
gi|388064116|gb|EIK86679.1| peptide deformylase [Gardnerella vaginalis 00703Dmash]
gi|388064829|gb|EIK87344.1| peptide deformylase [Gardnerella vaginalis 6119V5]
Length = 217
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVW 61
K+I L M + M GL+APQ+GL L + ++ E+ + + ++ P
Sbjct: 57 KLISL-MHSTMLEAPGVGLAAPQIGLGLAIAVI-----EDHVRDDEDDPRDIAELPFRAI 110
Query: 62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
INP + + + + + EGC S+ QA R+ VQ T DE GK S GW ARI
Sbjct: 111 INPHYEPIGTQTR-SFYEGCLSVSGYQAVRQRWLDVQATWQDEDGKQHSERLHGWPARIF 169
Query: 122 QHEMDHLDGLLFTDSMLPKSLECVCWQDINLQN 154
QHE DHL G L+ D +SL D NL++
Sbjct: 170 QHETDHLRGELYIDRAEMRSLST----DENLED 198
>gi|427729378|ref|YP_007075615.1| peptide deformylase [Nostoc sp. PCC 7524]
gi|427365297|gb|AFY48018.1| peptide deformylase [Nostoc sp. PCC 7524]
Length = 187
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I +M M D GL+APQVG+ +L ++ +P+ A P ++
Sbjct: 41 IRQLIREMLQTMYSNDGIGLAAPQVGVHKQLIVIDC-EPDNP------------ANPPLI 87
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP +K + +D A EGC S+ + V R V++ DE G+P + A R
Sbjct: 88 LINPTIKQVS-RDICMAQEGCLSIPGVYMDVKRPAVVEVAYKDEYGRPQTLKATDLLGRC 146
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHEMDHL+G++F D +
Sbjct: 147 IQHEMDHLNGVVFVDRV 163
>gi|421858975|ref|ZP_16291224.1| N-formylmethionyl-tRNA deformylase [Paenibacillus popilliae ATCC
14706]
gi|410831494|dbj|GAC41661.1| N-formylmethionyl-tRNA deformylase [Paenibacillus popilliae ATCC
14706]
Length = 160
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 18/128 (14%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M + M D GL+APQ+G+ R+ IV D E E INP
Sbjct: 35 MADTMYHADGVGLAAPQIGILKRVIIVDVGD-EHGLIE---------------MINP--I 76
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
IL + + EGC S+ L V RY + + GLD GK + A + AR QHE+DH
Sbjct: 77 ILKAEGEQLGTEGCLSIPGLNGDVRRYEHITVQGLDRHGKTFTVEASDFLARAFQHEIDH 136
Query: 128 LDGLLFTD 135
L+G+LFT+
Sbjct: 137 LNGILFTE 144
>gi|387133425|ref|YP_006299397.1| peptide deformylase [Prevotella intermedia 17]
gi|386376273|gb|AFJ08640.1| peptide deformylase [Prevotella intermedia 17]
Length = 187
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 75/159 (47%), Gaps = 10/159 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M D GL+APQ+G +R+ ++ E F E + F H +IN
Sbjct: 30 LIADMFETCAASDGIGLAAPQIGKAIRVVVIDLDVISEHFPE-------YKGFRH-AFIN 81
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKP-DSWTAEGWAARIIQ 122
+ D + T EGC SL + V R ++ + LDE K D W +G+ AR+IQ
Sbjct: 82 GHILEFDDTETETMEEGCLSLPGIHENVTRPTRIHVKYLDEELKEHDEWI-DGYLARVIQ 140
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
HE DH++G +FTD + P + + + L +G Y
Sbjct: 141 HEFDHIEGKVFTDRISPFRKKMITKKMKALASGNFNCHY 179
>gi|291450059|ref|ZP_06589449.1| polypeptide deformylase [Streptomyces albus J1074]
gi|421743973|ref|ZP_16181989.1| peptide deformylase [Streptomyces sp. SM8]
gi|291353008|gb|EFE79910.1| polypeptide deformylase [Streptomyces albus J1074]
gi|406687619|gb|EKC91624.1| peptide deformylase [Streptomyces sp. SM8]
Length = 215
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+A Q+G+PLR+F+ PD E+ G + +NP + D V
Sbjct: 88 GLAANQIGVPLRVFVHDCPDDEDRRHLGHL-------------VNPRLVEADGV-VVRGP 133
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC SL L+A RY + G+D G+P + G+ AR +QHE DHLDG L+ D
Sbjct: 134 EGCLSLPGLEAGTERYDHAVVEGVDLRGEPRTVHGTGFFARCLQHESDHLDGTLYVD 190
>gi|390955001|ref|YP_006418759.1| peptide deformylase [Aequorivita sublithincola DSM 14238]
gi|390420987|gb|AFL81744.1| peptide deformylase [Aequorivita sublithincola DSM 14238]
Length = 196
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 4/146 (2%)
Query: 19 GLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQV LP+RLFIV A P ++ + +KF + F V+IN + + + D+
Sbjct: 45 GLAAPQVNLPIRLFIVDATPFEDDEDLSEEEQKF-LSTFKK-VFINARI-VKESGDEWAF 101
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ ++ V R + + DE K T G ARIIQHE DH++G+LFTD +
Sbjct: 102 NEGCLSIPDVREDVFRQPDIVIEYEDENFKKHKETFSGIVARIIQHEYDHIEGILFTDKL 161
Query: 138 LPKSLECVCWQDINLQNGLLELRYYM 163
+ + N+ G + Y M
Sbjct: 162 SSLKKRLIKSKLTNISKGNISTDYRM 187
>gi|289671064|ref|ZP_06492139.1| peptide deformylase [Xanthomonas campestris pv. musacearum NCPPB
4381]
Length = 171
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 11/150 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ ++ M M GL+APQ+ + L+L + F D E + E A P
Sbjct: 28 LHALVADMFETMDAARGVGLAAPQIAVDLQLMVFGF-DASERYPEA-------PAVPRTA 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
N +++ L ++ EGC S+ L+A +PRYR ++ G+ P + AEG+ AR+
Sbjct: 80 LANAQIEPLS-EEMENGWEGCLSIPGLRAVIPRYRYIRYRGVAPDDSPIAREAEGFHARV 138
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDI 150
+QHE DHL G L+ + ++ + ++D+
Sbjct: 139 VQHEYDHLVGRLYPSRI--ENFDTFGFEDV 166
>gi|421529663|ref|ZP_15976190.1| peptide deformylase [Pseudomonas putida S11]
gi|402212884|gb|EJT84254.1| peptide deformylase [Pseudomonas putida S11]
Length = 178
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M+ GL+APQ+G+ L+L I F E + + + P +
Sbjct: 30 LQQLIDDMFETMRHVGGVGLAAPQIGIDLQLVIFGFERSE--------RYPDAEPVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + + + EGC S+ L+ VPR++ + G+D G P + A+G+ AR+
Sbjct: 82 LLNPVITPTSSEIE-DGWEGCLSVPGLRGVVPRFKHICYEGIDPQGNPINRFADGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|343085145|ref|YP_004774440.1| peptide deformylase [Cyclobacterium marinum DSM 745]
gi|342353679|gb|AEL26209.1| Peptide deformylase [Cyclobacterium marinum DSM 745]
Length = 182
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M + + GL+APQ+ +RLF++ D E D +K +AF IN
Sbjct: 29 LIHDMFETMGKANGVGLAAPQINKGIRLFVI---DSNLMLDEEDEEKGIRKAF-----IN 80
Query: 64 PEMKILD-YKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
P ILD Y DK EGC S+ ++A++ R K+ + DE G AR+IQ
Sbjct: 81 P--IILDEYGDKYVFEEGCLSIPEVRAEITRPEKLTIEYFDENWNLKEEEFSGMTARVIQ 138
Query: 123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
HE DH++G+LF D + V + I++ G + Y M
Sbjct: 139 HEYDHIEGILFVDYLKGLKRRMVKGKLIDISKGKVPTDYRM 179
>gi|339488798|ref|YP_004703326.1| peptide deformylase [Pseudomonas putida S16]
gi|338839641|gb|AEJ14446.1| peptide deformylase [Pseudomonas putida S16]
Length = 178
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M+ GL+APQ+G+ L+L I F E + + + P +
Sbjct: 30 LQQLIDDMFETMRHVGGVGLAAPQIGIDLQLVIFGFERSE--------RYPDAEPVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + + + EGC S+ L+ VPR++ + G+D G P + A+G+ AR+
Sbjct: 82 LLNPVITPTSSEIE-DGWEGCLSVPGLRGVVPRFKHICYEGIDPQGNPINRFADGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|291443077|ref|ZP_06582467.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998]
gi|291346024|gb|EFE72928.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998]
Length = 205
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M GL+A Q+G+PL++F+ PD ++ G + +N
Sbjct: 65 LIEDMFATMYAAQGVGLAANQIGVPLKVFVYDCPDDDDVRHLGHV-------------VN 111
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE+ D V EGC SL L+A R+ + GL TG+P GW AR +QH
Sbjct: 112 PELVEADGL-TVRGPEGCLSLPGLEAGTERFDHAVVEGLTMTGEPVRIAGTGWFARCLQH 170
Query: 124 EMDHLDGLLFTDSM 137
E DHL+G ++ D +
Sbjct: 171 ECDHLEGTVYPDRL 184
>gi|336398950|ref|ZP_08579750.1| peptide deformylase [Prevotella multisaccharivorax DSM 17128]
gi|336068686|gb|EGN57320.1| peptide deformylase [Prevotella multisaccharivorax DSM 17128]
Length = 187
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 9/138 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K +++ M + GL+APQVG +R+ ++ +E + E A H
Sbjct: 27 LKQLLVDMFETLDASSGVGLAAPQVGKSIRVVVIDLDVLKEEYPE--------YAGFHHA 78
Query: 61 WINPEMKILDYK-DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+IN + D K KV+ EGC S+ L +V R +++ T LDE +P +G+ AR
Sbjct: 79 FINGHILEADEKAGKVSMEEGCLSIPGLSEEVSRPKRIHATWLDEDLQPHDEWVDGYQAR 138
Query: 120 IIQHEMDHLDGLLFTDSM 137
++QHE DHL+G+L+ D +
Sbjct: 139 VMQHEFDHLEGVLYVDKI 156
>gi|16272565|ref|NP_438782.1| peptide deformylase [Haemophilus influenzae Rd KW20]
gi|260581531|ref|ZP_05849338.1| peptide deformylase [Haemophilus influenzae RdAW]
gi|1169264|sp|P44786.1|DEF_HAEIN RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|1573618|gb|AAC22282.1| polypeptide deformylase (def) [Haemophilus influenzae Rd KW20]
gi|260091805|gb|EEW75761.1| peptide deformylase [Haemophilus influenzae RdAW]
Length = 169
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I+ M + M + GL+APQV + R+ + EGD + V
Sbjct: 28 IRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDV--------EGDKQN-------QFV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE IL + + EGC S+ +A VPR KV + LD GK + A+G A
Sbjct: 73 LINPE--ILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLDADGLLAIC 130
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHL+G+LF D + P
Sbjct: 131 IQHEIDHLNGILFVDYLSP 149
>gi|379729207|ref|YP_005321403.1| peptide deformylase [Saprospira grandis str. Lewin]
gi|424842875|ref|ZP_18267500.1| peptide deformylase [Saprospira grandis DSM 2844]
gi|378574818|gb|AFC23819.1| peptide deformylase [Saprospira grandis str. Lewin]
gi|395321073|gb|EJF53994.1| peptide deformylase [Saprospira grandis DSM 2844]
Length = 185
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 11/146 (7%)
Query: 19 GLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
G++APQVG LRLF+V EE E +K+ V+INP + I + T
Sbjct: 45 GIAAPQVGQSLRLFLVDTLQLDEEKNGEKGLKE---------VFINP-IIIEEAGKPWTY 94
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ ++ KV R +V++ D+ + +G AR+IQHE DH++G+LFTD +
Sbjct: 95 EEGCLSIPNIHGKVKRKAQVRIEYYDQNFELKEKVFDGLNARVIQHEYDHIEGVLFTDYL 154
Query: 138 LPKSLECVCWQDINLQNGLLELRYYM 163
P + + +Q G + RY M
Sbjct: 155 SPMKKRMLKKRLDKIQTGDIPRRYKM 180
>gi|359777560|ref|ZP_09280840.1| peptide deformylase [Arthrobacter globiformis NBRC 12137]
gi|359305100|dbj|GAB14669.1| peptide deformylase [Arthrobacter globiformis NBRC 12137]
Length = 190
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 17/142 (11%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M + GL+APQ+G+ R+F+ F + E A P V
Sbjct: 28 LRQLIADMFETNDMANGVGLAAPQIGVGKRIFVYKFEN-------------EDGAPPAGV 74
Query: 61 WINPEMKILDYK----DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
+NP + + D +EGC S Q + R V++ G D GKP + A GW
Sbjct: 75 VVNPVLTLSKVSGALPDPDEEVEGCLSFPGGQYPLKRAEWVRVQGFDGHGKPVDFEATGW 134
Query: 117 AARIIQHEMDHLDGLLFTDSML 138
ARIIQHE DHLDG L+ + ++
Sbjct: 135 FARIIQHEYDHLDGKLYVNRLI 156
>gi|431803813|ref|YP_007230716.1| peptide deformylase [Pseudomonas putida HB3267]
gi|430794578|gb|AGA74773.1| peptide deformylase [Pseudomonas putida HB3267]
Length = 178
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M+ GL+APQ+G+ L+L I F E + + + P +
Sbjct: 30 LQQLIDDMFETMRHVGGVGLAAPQIGIDLQLVIFGFERSE--------RYPDAEPVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + + + EGC S+ L+ VPR++ + G+D G P + A+G+ AR+
Sbjct: 82 LLNPVITPTSSEIE-DGWEGCLSVPGLRGVVPRFKHICYEGIDPQGNPINRFADGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|433457040|ref|ZP_20415059.1| peptide deformylase [Arthrobacter crystallopoietes BAB-32]
gi|432195431|gb|ELK51964.1| peptide deformylase [Arthrobacter crystallopoietes BAB-32]
Length = 190
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 17/141 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M M GL+APQ+G+ LRL+ F + + G V
Sbjct: 28 LKELVADMYETMDAAHGVGLAAPQIGVGLRLYTYHFANDDGVPERG-------------V 74
Query: 61 WINPEMKILDYK----DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116
+NP + + D +EGC S+ L + R ++ G DE G P + A GW
Sbjct: 75 VVNPSITLGKVSGAEPDPDEEVEGCLSVPGLSYPLKRAEWARVQGFDEHGSPLDFEATGW 134
Query: 117 AARIIQHEMDHLDGLLFTDSM 137
AR++QHE DHLDG L+ D +
Sbjct: 135 FARVMQHEYDHLDGKLYIDRL 155
>gi|83816785|ref|YP_445415.1| peptide deformylase [Salinibacter ruber DSM 13855]
gi|294507298|ref|YP_003571356.1| peptide deformylase [Salinibacter ruber M8]
gi|123739741|sp|Q2S316.1|DEF_SALRD RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|83758179|gb|ABC46292.1| peptide deformylase [Salinibacter ruber DSM 13855]
gi|294343626|emb|CBH24404.1| Peptide deformylase [Salinibacter ruber M8]
Length = 195
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 9/163 (5%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPH-- 58
++ +I M M GL+APQVG RLF+V + +E + P
Sbjct: 27 LQELIDNMIETMHNAAGIGLAAPQVGRTERLFVVDLTPMADEIAEAG------EPLPPQP 80
Query: 59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
MV+INPE+ + + +D EGC S+ ++ V R ++++ D + A G +
Sbjct: 81 MVFINPEI-VEESEDTAEMEEGCLSIPEVREAVARPERIRMRYRDREFEEQELEAGGMLS 139
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
R++QHE DHLDG+LFTD + + + NG +E Y
Sbjct: 140 RVLQHERDHLDGVLFTDYLSSFRKRLLRRPLREMVNGEVEADY 182
>gi|395008623|ref|ZP_10392249.1| peptide deformylase [Acidovorax sp. CF316]
gi|394313345|gb|EJE50393.1| peptide deformylase [Acidovorax sp. CF316]
Length = 179
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +++ M M+ + GL+APQ+G+ L+L I D + I P V
Sbjct: 29 LHLLVRDMLETMQSVNGAGLAAPQIGVDLQLVIFGSNDRNPRYPSRPI-------VPPTV 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L +++ C S+ L+ KVPR+ +++ TG D G P T +G+ AR+
Sbjct: 82 LINPVITPLGDEEEEDWEG-CLSVPGLRGKVPRWSRIRYTGFDLYGDPIDRTVDGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGKLY 153
>gi|423126056|ref|ZP_17113735.1| peptide deformylase [Klebsiella oxytoca 10-5250]
gi|376397628|gb|EHT10258.1| peptide deformylase [Klebsiella oxytoca 10-5250]
Length = 169
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 17/122 (13%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+A QV + R+ ++ + E +V INPE+ L+ +
Sbjct: 45 IGLAATQVDIHQRIIVIDVSENREE---------------QLVLINPEL--LEKSGETGI 87
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ +A VPR KV++ LD GKP A+G A IQHEMDHL G LF D +
Sbjct: 88 EEGCLSIPEQRALVPRAEKVKIRALDRDGKPYELEADGLLAICIQHEMDHLVGKLFIDYL 147
Query: 138 LP 139
P
Sbjct: 148 SP 149
>gi|440690566|pdb|3UWA|A Chain A, Crystal Structure Of A Probable Peptide Deformylase From
Synechococcus Phage S-Ssm7
gi|440690567|pdb|3UWB|A Chain A, Crystal Structure Of A Probable Peptide Deformylase From
Strucynechococcus Phage S-Ssm7 In Complex With Actinonin
Length = 154
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 14/120 (11%)
Query: 16 DLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
D GL+APQVG+ R+ +V + +E K + P + W + E + D
Sbjct: 42 DGIGLAAPQVGINKRVIVV------DETTEEHGKYAHLXVNPKITWKSEEKVLFD----- 90
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+ +V R + +++T ++ GK W +G AAR++QHE+DHL+G+LF D
Sbjct: 91 ---EGCLSVPDQNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLEGILFVD 147
>gi|419838551|ref|ZP_14361976.1| peptide deformylase [Haemophilus haemolyticus HK386]
gi|386910316|gb|EIJ74973.1| peptide deformylase [Haemophilus haemolyticus HK386]
Length = 169
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 17/139 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I+ M + M + + GL+APQV + R+ + EGD + +V
Sbjct: 28 IRKIVDDMFDTMYQEEGIGLAAPQVDILQRIITIDV--------EGDKQN-------QLV 72
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INPE IL + + EGC S+ +A VPR KV + LD GK A+G A
Sbjct: 73 LINPE--ILVSEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRDGKEFILDADGLLAIC 130
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE+DHL+G+LF D + P
Sbjct: 131 IQHEIDHLNGILFVDYLSP 149
>gi|340617205|ref|YP_004735658.1| formylmethionine deformylase [Zobellia galactanivorans]
gi|339732002|emb|CAZ95270.1| Formylmethionine deformylase [Zobellia galactanivorans]
Length = 176
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 74/131 (56%), Gaps = 11/131 (8%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
G++APQVG+ R+F + E + + ++FP V INP ++ L + V +
Sbjct: 49 GIAAPQVGVLKRVFTMEAKKNE--------RYPDKKSFPLSVVINPRIETLS-DEMVDSW 99
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
EGC S+ ++ ++ RY+ V+L+G D G + ++A + QHE+DHL+G+L D M
Sbjct: 100 EGCLSIPGIRGRLKRYKTVKLSGYDIKGNRFEKVLDDFSAIVAQHELDHLNGVLLIDRM- 158
Query: 139 PKSLECVCWQD 149
S+E + +Q+
Sbjct: 159 -PSMETLSFQE 168
>gi|325277883|ref|ZP_08143429.1| peptide deformylase [Pseudomonas sp. TJI-51]
gi|324096986|gb|EGB95286.1| peptide deformylase [Pseudomonas sp. TJI-51]
Length = 178
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M+ GL+APQVG+ L+L I F E + + +A P +
Sbjct: 30 LQQLIDDMFETMRHVGGVGLAAPQVGIELQLVIFGFERSE--------RYPDAEAVPQTI 81
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP + + + EGC S+ L+ VPR++ + G+D G AEG+ AR+
Sbjct: 82 LLNPVITPTSTELE-DGWEGCLSVPGLRGVVPRFKHICYEGIDPQGNAIRRFAEGFHARV 140
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 141 VQHECDHLIGRLY 153
>gi|406990774|gb|EKE10392.1| hypothetical protein ACD_16C00039G0003 [uncultured bacterium]
Length = 184
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQ+G R+ I+ D E D P +WINP K + K K
Sbjct: 60 GLAAPQIGYSKRVIILEANDEELKQYREDF----TDMLPKSIWINPSFKPVS-KKKTIDW 114
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
E C S+ ++ +VPR+ ++ GK +G+ AR+IQHE+DHL+G+LF D +
Sbjct: 115 EACFSVDGVKGEVPRFTEILYEAWTPDGKKVKGRVKGFLARLIQHEIDHLNGILFIDHI 173
>gi|389682056|ref|ZP_10173399.1| peptide deformylase [Pseudomonas chlororaphis O6]
gi|388553930|gb|EIM17180.1| peptide deformylase [Pseudomonas chlororaphis O6]
Length = 179
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ GL+APQ+G+ L+L I F E + + +A P + IN
Sbjct: 33 LIDDMFQTMESVGGVGLAAPQIGVDLQLVIFGF--------EHSERYPQAEAVPQTILIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L + EGC S+ L+ V RY+ ++ G+D G+P A G+ AR++QH
Sbjct: 85 PLITPLSPVLE-EGWEGCLSVPGLRGAVERYQHIRYEGVDPKGEPIVRIASGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLIGRLY 153
>gi|33239533|ref|NP_874475.1| peptide deformylase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|39930846|sp|Q7VED2.1|DEF_PROMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|33237058|gb|AAP99127.1| N-formylmethionyl-tRNA deformylase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 203
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV-T 76
GL+APQ+G +L ++ E A P ++ INPE I ++ + T
Sbjct: 72 IGLAAPQIGSQQQLLVIDL-------------DIENSATPPIILINPE--ITEFSATIDT 116
Query: 77 ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
EGC S+ + V R +++ DE G+P A+G AR IQHEMDHL+G+LF D
Sbjct: 117 YEEGCLSIPGVYLDVIRPSSIKVNFRDEMGRPKKINADGLLARCIQHEMDHLNGVLFVDR 176
Query: 137 ML 138
+
Sbjct: 177 AI 178
>gi|213965139|ref|ZP_03393337.1| peptide deformylase [Corynebacterium amycolatum SK46]
gi|213952253|gb|EEB63637.1| peptide deformylase [Corynebacterium amycolatum SK46]
Length = 193
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M R GL+A QVG+ RLF+ PD ++ + G +
Sbjct: 28 LRELIEDMYETMDRAHGVGLAANQVGVGKRLFVYNCPDDDDVWHRGCV------------ 75
Query: 61 WINPEMKILDY-----KDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEG 115
INP + + D + EGC S+ L R K +TGLDE G+ A G
Sbjct: 76 -INPVLTTSEIPKTMPNDDGSDDEGCLSVPGLSFPTNRAEKAVVTGLDENGEEVRIEATG 134
Query: 116 WAARIIQHEMDHLDGLLFTDSM 137
+ AR +QHE+ HLDG L+TD +
Sbjct: 135 FFARCMQHEVGHLDGFLYTDCL 156
>gi|334366737|ref|ZP_08515662.1| peptide deformylase [Alistipes sp. HGB5]
gi|390945580|ref|YP_006409340.1| peptide deformylase [Alistipes finegoldii DSM 17242]
gi|313157241|gb|EFR56671.1| peptide deformylase [Alistipes sp. HGB5]
gi|390422149|gb|AFL76655.1| peptide deformylase [Alistipes finegoldii DSM 17242]
Length = 181
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHM 59
+K ++ M + + GL+APQ+G +RLFIV P E+ D K+
Sbjct: 27 VKKLVEDMFQTLGEAEGVGLAAPQIGKAIRLFIVDCTPWGEDDPECADYKR--------- 77
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+INPE+ ++K T EGC S + A VPR +++ LDE G A
Sbjct: 78 AFINPEIYAFS-EEKKTYNEGCLSFPGIHADVPRSLAIRMRYLDENFVEHDEEFHGLKAW 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
+IQHE DH++G++FTD + P
Sbjct: 137 VIQHEYDHIEGVVFTDRISP 156
>gi|392960503|ref|ZP_10325971.1| Peptide deformylase [Pelosinus fermentans DSM 17108]
gi|421054740|ref|ZP_15517705.1| peptide deformylase [Pelosinus fermentans B4]
gi|421071603|ref|ZP_15532719.1| Peptide deformylase [Pelosinus fermentans A11]
gi|392440421|gb|EIW18101.1| peptide deformylase [Pelosinus fermentans B4]
gi|392446868|gb|EIW24139.1| Peptide deformylase [Pelosinus fermentans A11]
gi|392455080|gb|EIW31887.1| Peptide deformylase [Pelosinus fermentans DSM 17108]
Length = 169
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 19/135 (14%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M D GL+APQVG+ LR+ ++ D ++ E
Sbjct: 46 IRKLIDDMAQTMYNADGVGLAAPQVGVSLRVIVL---DVDDELIE--------------- 87
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + I +D EGC S+ + +V R+ +V +TGL+ GK + T G AR
Sbjct: 88 LINP-IIIKKSEDCELGNEGCLSVPGVFGEVERFSEVTVTGLNRFGKNITITGTGLLARA 146
Query: 121 IQHEMDHLDGLLFTD 135
+QHE+DHLDG+LF +
Sbjct: 147 LQHEIDHLDGILFIE 161
>gi|291280498|ref|YP_003497333.1| polypeptide deformylase [Deferribacter desulfuricans SSM1]
gi|290755200|dbj|BAI81577.1| polypeptide deformylase [Deferribacter desulfuricans SSM1]
Length = 167
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 12/122 (9%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
G++APQ+G +R+ + DP G KK + V INPE I+ ++ + +
Sbjct: 47 GIAAPQIGELVRIIAI---DP------GKNKKCK-NHHGKRVLINPE--IVKWEGLIQSR 94
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
EGC S+ V R KV + LDE +P ++ AEG+ A ++QHE+DHLDG+LF D ++
Sbjct: 95 EGCMSVPDYTGNVNRAEKVVVQFLDENLQPGAFEAEGFEAILLQHEIDHLDGILFIDRII 154
Query: 139 PK 140
K
Sbjct: 155 SK 156
>gi|326316988|ref|YP_004234660.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323373824|gb|ADX46093.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 179
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
++ M++ M+ + GL+APQ+G+ L++ I +E + + + P V +N
Sbjct: 32 LVQDMRDTMRAVNGAGLAAPQIGVDLQVVIFGS-------NERNPRYPDRPLVPPTVLVN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + L +++ C S+ L+ VPR+ ++ G DE G P T EG+ AR++QH
Sbjct: 85 PRITPLGDEEEEDWEG-CLSVPGLRGVVPRWSRIHYAGFDEHGTPIDRTVEGFHARVVQH 143
Query: 124 EMDHLDGLLF 133
E DHL G L+
Sbjct: 144 ECDHLVGKLY 153
>gi|325955519|ref|YP_004239179.1| peptide deformylase [Weeksella virosa DSM 16922]
gi|323438137|gb|ADX68601.1| Peptide deformylase [Weeksella virosa DSM 16922]
Length = 190
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 3/160 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M + M + GL+APQ+G +R+F+V P + D +K ++ F ++IN
Sbjct: 30 LIENMFDTMYDSNGVGLAAPQIGKSIRMFVVDC-RPFAEDEDNDEEKETLENF-KKIFIN 87
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P+ KI + D EGC S+ ++ V R + LT LDE + + G AR+IQH
Sbjct: 88 PK-KIETFGDDWKFTEGCLSIPNIHEDVTRPDGITLTYLDENFVEHTESFTGLPARVIQH 146
Query: 124 EMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYYM 163
E DHLDG LF D + + + + N+ G + + Y M
Sbjct: 147 EYDHLDGKLFIDYLSSFKKKLISNKLKNISKGNISVHYKM 186
>gi|375257647|ref|YP_005016817.1| peptide deformylase [Klebsiella oxytoca KCTC 1686]
gi|402843863|ref|ZP_10892247.1| peptide deformylase [Klebsiella sp. OBRC7]
gi|423105143|ref|ZP_17092845.1| peptide deformylase [Klebsiella oxytoca 10-5242]
gi|365907125|gb|AEX02578.1| peptide deformylase [Klebsiella oxytoca KCTC 1686]
gi|376381909|gb|EHS94645.1| peptide deformylase [Klebsiella oxytoca 10-5242]
gi|402276028|gb|EJU25157.1| peptide deformylase [Klebsiella sp. OBRC7]
Length = 169
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 17/122 (13%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+A QV + R+ ++ + E +V INPE+ L+ +
Sbjct: 45 IGLAATQVDIHQRIIVIDVSENREE---------------QLVLINPEL--LEKSGETGI 87
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ +A VPR KV++ LD GKP A+G A IQHEMDHL G LF D +
Sbjct: 88 EEGCLSIPEQRALVPRAEKVKIRALDREGKPFELEADGLLAICIQHEMDHLVGKLFIDYL 147
Query: 138 LP 139
P
Sbjct: 148 SP 149
>gi|224369791|ref|YP_002603955.1| hypothetical protein HRM2_26990 [Desulfobacterium autotrophicum
HRM2]
gi|259645178|sp|C0QI55.1|DEF_DESAH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|223692508|gb|ACN15791.1| Def [Desulfobacterium autotrophicum HRM2]
Length = 174
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
GL+APQVG R+ IV P S + D K+F+ INPE+ I V+
Sbjct: 46 GLAAPQVGQSRRI-IVYNPQAGSSNANEDTKEFK-------ALINPEI-IASSGSIVSEN 96
Query: 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
E C S+ V R+ V + GL+ GK + A+G A I+QHE+DHLDG+L+ D +
Sbjct: 97 EACLSVPDYSCNVKRFETVTVRGLNLEGKKLEFDAQGLLAVIMQHEIDHLDGILYIDRI 155
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,614,049,735
Number of Sequences: 23463169
Number of extensions: 101092879
Number of successful extensions: 206219
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5060
Number of HSP's successfully gapped in prelim test: 556
Number of HSP's that attempted gapping in prelim test: 197211
Number of HSP's gapped (non-prelim): 5674
length of query: 164
length of database: 8,064,228,071
effective HSP length: 125
effective length of query: 39
effective length of database: 9,426,299,242
effective search space: 367625670438
effective search space used: 367625670438
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)