BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14392
(164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9HBH1|DEFM_HUMAN Peptide deformylase, mitochondrial OS=Homo sapiens GN=PDF PE=1 SV=1
Length = 243
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 90/148 (60%), Gaps = 6/148 (4%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF---EMQAFPHMVWIN 63
++ VM+R GLSAPQ+G+P + ++A PE E ++ +M+ FP V++N
Sbjct: 98 RLVQVMRRRRCVGLSAPQLGVPRQ--VLALELPEALCRECPPRQRALRQMEPFPLRVFVN 155
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P +++LD + VT EGC S+ A VPR++ VQ++GLD G+ W A GWAARIIQH
Sbjct: 156 PSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQH 214
Query: 124 EMDHLDGLLFTDSMLPKSLECVCWQDIN 151
EMDHL G LF D M ++ V W +N
Sbjct: 215 EMDHLQGCLFIDKMDSRTFTNVYWMKVN 242
>sp|Q9FUZ0|DEF1A_SOLLC Peptide deformylase 1A, chloroplastic OS=Solanum lycopersicum
GN=PDF1A PE=2 SV=1
Length = 277
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 92/159 (57%), Gaps = 6/159 (3%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGD-IKKFEMQAFPHMVWI 62
II +M VM+ GL+APQ+G+PL++ ++ + S++ D K + + F +V I
Sbjct: 119 IIEEMVKVMRNAPGVGLAAPQIGIPLKIIVLEDTNEYISYAPKDETKAQDRRPFGLLVII 178
Query: 63 NPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP++K K TAL EGC S+ +A V R+ +V++TGLD GK A GW ARI
Sbjct: 179 NPKLK---KKGNKTALFFEGCLSVDGFRAVVERHLEVEVTGLDRNGKAIKVDASGWQARI 235
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLEL 159
+QHE DHLDG L+ D M P++ V D+ L G +L
Sbjct: 236 LQHEYDHLDGTLYVDKMAPRTFRTVENLDLPLAAGCPKL 274
>sp|B6RGY0|DEF1A_ORYSJ Peptide deformylase 1A, chloroplastic OS=Oryza sativa subsp.
japonica GN=PDF1A PE=2 SV=1
Length = 260
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 10/157 (6%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMV 60
+I +M VM++ GL+APQ+G+PL+ I+ D +E S + DI+ + + F +V
Sbjct: 102 VIDRMVAVMRKAPGVGLAAPQIGVPLK--IIVLEDTQEYISYAPKKDIEAQDRRPFDLLV 159
Query: 61 WINPEMKILDYKDKVTAL--EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
INP++K K TAL EGC S+ +A V R+ V+++GLD G+P A GW A
Sbjct: 160 IINPKLKT---TSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQA 216
Query: 119 RIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
RI+QHE DHL+G L+ D+M+P++ V D+ L G
Sbjct: 217 RILQHECDHLEGTLYVDTMVPRTFRIVDNLDLPLPVG 253
>sp|Q9FV53|DEF1A_ARATH Peptide deformylase 1A, chloroplastic OS=Arabidopsis thaliana
GN=PDF1A PE=1 SV=3
Length = 269
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMV 60
II M VM+ GL+APQ+G+PLR I+ D +E S + +I E + F MV
Sbjct: 111 IIDDMIKVMRLAPGVGLAAPQIGVPLR--IIVLEDTKEYISYAPKEEILAQERRHFDLMV 168
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NP +K K K EGC S+ +A V RY +V +TG D GK A GW ARI
Sbjct: 169 MVNPVLKERSNK-KALFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARI 227
Query: 121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLEL 159
+QHE DHLDG L+ D M+P++ V D+ L G +L
Sbjct: 228 LQHECDHLDGNLYVDKMVPRTFRTVDNLDLPLAEGCPKL 266
>sp|Q9RRQ4|DEF_DEIRA Peptide deformylase OS=Deinococcus radiodurans (strain ATCC 13939 /
DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB
9279 / R1 / VKM B-1422) GN=def PE=3 SV=1
Length = 232
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 19 GLSAPQVGLPLRLFI-VAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQ+GLP+R+F+ V + D EE +EG + V +NP +K+++ K +
Sbjct: 73 GLAAPQIGLPVRMFVAVEYADDEEE-NEGQETPLRSRVLREYVMLNPVVKVINKKKDKSY 131
Query: 78 LEGCASLKSL-QAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
EGC S+ + + VPR R+V++ D G+P S AE + AR+ QHE DHLDG LF D
Sbjct: 132 QEGCLSIPGIYEDGVPRARQVRVDYTDLDGQPRSIEAEDYLARVFQHETDHLDGKLFLDH 191
Query: 137 M 137
+
Sbjct: 192 L 192
>sp|Q7NJV3|DEF1_GLOVI Peptide deformylase 1 OS=Gloeobacter violaceus (strain PCC 7421)
GN=def1 PE=3 SV=1
Length = 227
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVA-FPDPEESFSEGDIKKFEMQAFPHMVWI 62
+I M M+ GL+APQVG+ ++L ++ P+ E S + ++ E + P V I
Sbjct: 76 LIAAMAERMREAPGVGLAAPQVGVSVQLVVIEDRPEYIERLSGAERREREREPVPFHVLI 135
Query: 63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
NP + + + ++ EGC S+ Q V R R V++ LDE P A GW ARI+Q
Sbjct: 136 NPVLSV-EGEESAVFFEGCLSIPGYQGLVARARVVRVEALDERAAPVVIRAHGWYARILQ 194
Query: 123 HEMDHLDGLLFTDSM 137
HE+DHL+GLL D M
Sbjct: 195 HEIDHLNGLLCVDRM 209
>sp|Q825U9|DEF3_STRAW Peptide deformylase 3 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=def3 PE=3 SV=1
Length = 224
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 18 FGLSAPQVGLPLRLFIV--AFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
GL+APQVG+ LR+ ++ P PEE G ++ Q F V +NP + + D+
Sbjct: 76 VGLAAPQVGVGLRIAVIEDPAPVPEEV---GAVRGRVPQPF--RVLVNPSYEAVG-SDRA 129
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+ QA V R +V+LT LDE G+ GW ARI+QHE DHLDG+L+ D
Sbjct: 130 AFFEGCLSVPGWQAVVARPARVRLTALDEHGRAVDEEFTGWPARIVQHETDHLDGMLYLD 189
Query: 136 SMLPKSLEC 144
+SL
Sbjct: 190 RAELRSLSS 198
>sp|Q7NIF5|DEF2_GLOVI Peptide deformylase 2 OS=Gloeobacter violaceus (strain PCC 7421)
GN=def2 PE=3 SV=1
Length = 187
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 68/131 (51%), Gaps = 14/131 (10%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
QM M D GL+APQVG+ R+ +V DPE + A P +V INP +
Sbjct: 47 QMLQTMYSADGIGLAAPQVGVNKRMIVVDI-DPENA------------ARPPLVLINPLI 93
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
K D EGC S+ S+ A V R +V T D G+P + A G AR IQHE+D
Sbjct: 94 KQFS-SDLAVDQEGCLSVPSIYADVRRPERVVATYRDLNGRPVTLEATGLLARCIQHEID 152
Query: 127 HLDGLLFTDSM 137
HLDG+LF D +
Sbjct: 153 HLDGVLFVDRV 163
>sp|Q7MT07|DEF_PORGI Peptide deformylase OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=def PE=3 SV=1
Length = 189
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 11/162 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M D GL+APQ+GLP+R+ ++ +E + E K+
Sbjct: 27 LKELIANMTESMYHSDGIGLAAPQIGLPIRVLVIDADPLKEDYPECAGFKR--------- 77
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V IN ++ +D T EGC SL ++ KV R +++ +DE +P +G+AAR
Sbjct: 78 VMINAHIEERG-EDLCTEYEGCLSLPAIHEKVERPTSIRIRYVDEDFQPHEEVLQGFAAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
++QHE DH+DG LF D + P + + + N+ G + Y
Sbjct: 137 VVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIKGKVRTSY 178
>sp|B2RMJ1|DEF_PORG3 Peptide deformylase OS=Porphyromonas gingivalis (strain ATCC 33277
/ DSM 20709 / JCM 12257) GN=def PE=3 SV=1
Length = 189
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M D GL+APQ+GLP+R+ ++ +E + E K+
Sbjct: 27 LKELIANMTESMYHSDGIGLAAPQIGLPIRVLVIDADPLKEDYPECAGFKR--------- 77
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V IN ++ +D T EGC SL ++ KV R +++ +DE +P G+AAR
Sbjct: 78 VMINAHIEERG-EDLCTEYEGCLSLPAIHEKVERPTSIRIRYVDEDFQPHEEVLHGFAAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161
++QHE DH+DG LF D + P + + + N+ G + Y
Sbjct: 137 VVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIKGKVRTSY 178
>sp|Q67PR5|DEF_SYMTH Peptide deformylase OS=Symbiobacterium thermophilum (strain T / IAM
14863) GN=def PE=3 SV=1
Length = 217
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 71/128 (55%), Gaps = 17/128 (13%)
Query: 8 MKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMK 67
M M GL+APQVG+ RL +V DP++ G + +++ INPE
Sbjct: 35 MTETMYAAPGVGLAAPQVGVSKRLIVV---DPQD----GSGQLYQL--------INPE-- 77
Query: 68 ILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127
I+ + V EGC S+ + V RY KVQ+ LD TGK AEG+ ARI QHE+DH
Sbjct: 78 IVKAEGWVKGTEGCLSIPGMVGDVWRYEKVQVVALDRTGKKVWIDAEGYLARIFQHEIDH 137
Query: 128 LDGLLFTD 135
LDG+L+TD
Sbjct: 138 LDGILYTD 145
>sp|Q7V8G6|DEF1_PROMM Peptide deformylase 1 OS=Prochlorococcus marinus (strain MIT 9313)
GN=def1 PE=3 SV=1
Length = 192
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I +++ +K GL+APQ+G+PLR+ + P + E + P + IN
Sbjct: 32 LIKDLQDTVKAHQGAGLAAPQIGVPLRVVLFGGGGPNPRYPE-------APSIPQTLLIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P + + D EGC S+ L+ KV R+ ++ L+E G EG+ AR+IQH
Sbjct: 85 PVLTPIG-SDLEDGWEGCLSVPGLRGKVSRWSRIHYRALNEDGFEVEHCLEGFPARVIQH 143
Query: 124 EMDHLDGLLFTDSML 138
E DHLDG+LF D ++
Sbjct: 144 ECDHLDGVLFPDRLV 158
>sp|Q64VP5|DEF_BACFR Peptide deformylase OS=Bacteroides fragilis (strain YCH46) GN=def
PE=3 SV=1
Length = 184
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M D GL+APQ+GLP+R+ ++ E + E D +K
Sbjct: 27 LKELIENMFETMDHADGVGLAAPQIGLPIRVVVINLDVLSEDYPEYKDFRK--------- 77
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+IN + +++ ++V+ EGC SL + V R K+ + +DE + EG+ AR
Sbjct: 78 AYINAHIDVVE-GEEVSMEEGCLSLPGIHESVKRGSKIHVRYMDENFVEHNEVVEGFLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHLDG +F D + P
Sbjct: 137 VMQHEFDHLDGKMFIDHISP 156
>sp|Q5LEQ9|DEF_BACFN Peptide deformylase OS=Bacteroides fragilis (strain ATCC 25285 /
NCTC 9343) GN=def PE=3 SV=1
Length = 184
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 11/140 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSE-GDIKKFEMQAFPHM 59
+K +I M M D GL+APQ+GLP+R+ ++ E + E D +K
Sbjct: 27 LKELIENMFETMDHADGVGLAAPQIGLPIRVVVINLDVLSEDYPEYKDFRK--------- 77
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+IN + +++ ++V+ EGC SL + V R K+ + +DE + EG+ AR
Sbjct: 78 AYINAHIDVVE-GEEVSMEEGCLSLPGIHESVKRGSKIHVRYMDENFVEHNEVVEGFLAR 136
Query: 120 IIQHEMDHLDGLLFTDSMLP 139
++QHE DHLDG +F D + P
Sbjct: 137 VMQHEFDHLDGKMFIDHISP 156
>sp|B3CTU1|DEF_ORITI Peptide deformylase OS=Orientia tsutsugamushi (strain Ikeda) GN=def
PE=3 SV=1
Length = 181
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQV + R+ ++ + E +I E + +P + +NP +K + TA
Sbjct: 45 VGLAAPQVAVSKRIIVLDLSKVD--IKEDNITNSEYK-YP-LFMVNPIVKAIS-NQTATA 99
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC SL +V RY ++Q+T LD K + AEGW AR IQHE+DHLDG+L D
Sbjct: 100 KEGCLSLPKQAIEVSRYHEIQVTYLDYYNKLTTLNAEGWLARAIQHEVDHLDGILLVD 157
>sp|A5CF65|DEF_ORITB Peptide deformylase OS=Orientia tsutsugamushi (strain Boryong)
GN=def PE=3 SV=1
Length = 181
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQV + R+ ++ + E +I E + +P + +NP +K + VTA
Sbjct: 45 VGLAAPQVAVSKRIIVLDLSKVD--IEEDNITNSEYK-YP-LFMVNPIVKAIS-NQTVTA 99
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC SL +V RY ++Q+T LD K + A GW AR IQHE+DHLDG+L D
Sbjct: 100 KEGCLSLPKQAIEVSRYHEIQVTYLDYYNKLKTLNAAGWLARAIQHEVDHLDGILLVD 157
>sp|Q8AAP4|DEF_BACTN Peptide deformylase OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=def
PE=3 SV=1
Length = 184
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 13/141 (9%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAF--PH 58
+K +I M M D GL+APQ+GLP+R+ + E + E K F +A+ PH
Sbjct: 27 LKELIANMFETMVHADGVGLAAPQIGLPIRVVTITLDPLSEDYPE--FKDFN-KAYINPH 83
Query: 59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
++ + E +V+ EGC SL + V R K+++ +DE EG+ A
Sbjct: 84 IIEVGGE--------EVSMEEGCLSLPGIHESVKRGNKIRVKYMDENFVEHDEVVEGYLA 135
Query: 119 RIIQHEMDHLDGLLFTDSMLP 139
R++QHE DHLDG +F D + P
Sbjct: 136 RVMQHEFDHLDGKMFIDHLSP 156
>sp|Q7UHZ5|DEF_RHOBA Peptide deformylase OS=Rhodopirellula baltica (strain SH1) GN=def
PE=3 SV=1
Length = 201
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 15/142 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K + +M ++M FD GL+A QV LP+R+F+ +P EG+ V
Sbjct: 27 LKSMADEMLDLMYEFDGVGLAANQVDLPIRMFVA---NPTGKRDEGE----------SWV 73
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+NPE+ D TA EGC S+ L +V R + V+L G D G + +G+ AR+
Sbjct: 74 ILNPEIDRPKGND--TAQEGCLSVPGLYGQVKRPKTVRLRGFDLQGNEINQVLDGFMARV 131
Query: 121 IQHEMDHLDGLLFTDSMLPKSL 142
+QHE+DHLDG++F D + + L
Sbjct: 132 VQHEVDHLDGIMFFDRIGEEGL 153
>sp|Q6AQ98|DEF_DESPS Peptide deformylase OS=Desulfotalea psychrophila (strain LSv54 /
DSM 12343) GN=def PE=3 SV=1
Length = 169
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 14/120 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQ+G L+L +V+ E+S E +MV NPE I++ ++
Sbjct: 45 IGLAAPQIGESLKLVVVSTARREDSKQE------------YMVMANPE--IVEKEESQVD 90
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ L A V RYRK+++ D G+P S T E A ++QHE+DHL+G+LF D +
Sbjct: 91 EEGCLSVPELLAMVKRYRKIKVNYQDINGEPCSMTVEDRFAVVLQHEIDHLNGILFLDHL 150
>sp|Q92JI7|DEF2_RICCN Peptide deformylase 2 OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=def2 PE=3 SV=2
Length = 202
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFE---MQAFPHMVWINPEMKILDYKDKV 75
GL+APQ+G+ + I A + ++KK+ P +WINP K + DK
Sbjct: 62 GLAAPQIGISKCIIIFAV------HEDAELKKWHPDLKDTMPKTIWINPSYKPIGI-DKH 114
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+++ V R++K+ D G AEG+ AR+IQHE+DHL+G +F D
Sbjct: 115 EDYEGCFSVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLD 174
Query: 136 SMLPKSL 142
+ PK +
Sbjct: 175 YVAPKKI 181
>sp|B5YIL7|DEF_THEYD Peptide deformylase OS=Thermodesulfovibrio yellowstonii (strain
ATCC 51303 / DSM 11347 / YP87) GN=def PE=3 SV=1
Length = 165
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 69/136 (50%), Gaps = 15/136 (11%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M + GL+APQVG+ RL +V E++ S +V IN
Sbjct: 31 LIDNMIETMYNANGIGLAAPQVGVLKRLIVVDTSPREQNQS-------------LIVLIN 77
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
PE I D + ++ + EGC SL ++ R +V + GLD GK A G AR +QH
Sbjct: 78 PE--ITDSEGEILSEEGCLSLPGFTTRLKRKERVIVKGLDRNGKEIEIEATGLLARALQH 135
Query: 124 EMDHLDGLLFTDSMLP 139
E+DHLDG+L D + P
Sbjct: 136 EIDHLDGILLIDKISP 151
>sp|Q46HV9|DEF_PROMT Peptide deformylase OS=Prochlorococcus marinus (strain NATL2A)
GN=def PE=3 SV=1
Length = 202
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 63/120 (52%), Gaps = 14/120 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ RL ++ KFE P MV+INPE+ I T
Sbjct: 72 IGLAAPQVGIQKRLLVIDL-------------KFEDPNSPPMVFINPEI-ISSSATLDTY 117
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + V R ++L+ DE G+P A+G AR IQHE+DHL+G+ F D +
Sbjct: 118 EEGCLSIPGVYLNVLRPSSIKLSYRDEMGRPKKMNADGLMARCIQHEIDHLNGVCFVDKV 177
>sp|Q0AXL3|DEF_SYNWW Peptide deformylase OS=Syntrophomonas wolfei subsp. wolfei (strain
Goettingen) GN=def PE=3 SV=1
Length = 152
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 20/137 (14%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEM 66
M++ M D GL+APQ+G+P R+ +V D E+ E INPE
Sbjct: 34 NMRDTMYAADGVGLAAPQIGIPKRMIVV---DIGENLLE---------------LINPE- 74
Query: 67 KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMD 126
IL + EGC S+ + +V R +KV + GLD G+ ++ A A+++QHE+D
Sbjct: 75 -ILKQEGNQLGSEGCLSVPGIVGRVNRAKKVLVKGLDRNGQELNFAAVDLLAKVLQHEID 133
Query: 127 HLDGLLFTDSMLPKSLE 143
HL+G+LF D + +E
Sbjct: 134 HLEGILFIDKAIETRIE 150
>sp|A6L7J9|DEF_BACV8 Peptide deformylase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM
1447 / NCTC 11154) GN=def PE=3 SV=1
Length = 184
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 11/138 (7%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAF-PHM 59
+K +I M M R D GL+APQ+GLP+R+ + + E K F PH+
Sbjct: 27 LKELIANMFETMNRADGVGLAAPQIGLPIRVVTIDLDVMSDDLPE--FKDFRRAYINPHI 84
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+ + E +V+ EGC SL + V R ++ +T LDE K EG+ AR
Sbjct: 85 LEVGGE--------EVSMEEGCLSLPGIHEAVKRPDRIHVTYLDEELKEHDEWVEGYLAR 136
Query: 120 IIQHEMDHLDGLLFTDSM 137
++QHE DHLDG +F D +
Sbjct: 137 VMQHEFDHLDGKMFIDHL 154
>sp|Q9PK41|DEF_CHLMU Peptide deformylase OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=def PE=3 SV=1
Length = 181
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 12/142 (8%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ ++L M M + GL+APQVG + LFI+ E+ +G++ + FP V
Sbjct: 27 LRQLVLDMSETMTFYKGVGLAAPQVGHSVALFIMGV---EKELDDGELIFCD---FPK-V 79
Query: 61 WINPEMKILDYKDK--VTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
+INP ++ K + V EGC S+ L+ +V R K+ +T + G+P S T EG+ A
Sbjct: 80 FINP---VITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVTAKNLDGQPFSMTLEGFLA 136
Query: 119 RIIQHEMDHLDGLLFTDSMLPK 140
RI+ HE DHL G+L+ D M K
Sbjct: 137 RIVMHETDHLHGVLYIDRMSDK 158
>sp|O66847|DEF_AQUAE Peptide deformylase OS=Aquifex aeolicus (strain VF5) GN=def PE=3
SV=1
Length = 169
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 16/138 (11%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFP-HM 59
+K +I M + M + GL+A Q+G+PL + ++ E+ A P +
Sbjct: 27 VKNLIRDMFDTMYEAEGVGLAANQIGVPLSVMVIDTSPKED-------------APPLKL 73
Query: 60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
V INPE+K + + K+ EGC S L +V R++KV++ L+E G+P T EG+ A
Sbjct: 74 VLINPEIK--EGEGKIKYKEGCLSFPGLSVEVERFQKVKVNALNEHGEPVELTLEGFPAI 131
Query: 120 IIQHEMDHLDGLLFTDSM 137
+ QHE+DHL G+ F D +
Sbjct: 132 VFQHELDHLKGITFVDRL 149
>sp|A2BZN6|DEF_PROM1 Peptide deformylase OS=Prochlorococcus marinus (strain NATL1A)
GN=def PE=3 SV=1
Length = 202
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ RL ++ FE P MV+INPE+ I T
Sbjct: 72 IGLAAPQVGIQKRLLVIDL-------------NFEDPNSPPMVFINPEI-ISSSATVDTY 117
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + V R ++L+ DE G+P A+G AR IQHE+DHL+G+ F D +
Sbjct: 118 EEGCLSIPGVYLNVLRPSSIKLSYRDEMGRPKKMNADGLMARCIQHEIDHLNGVCFVDKV 177
>sp|Q8XJL2|DEF1_CLOPE Peptide deformylase 1 OS=Clostridium perfringens (strain 13 / Type
A) GN=def1 PE=3 SV=1
Length = 147
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 69/138 (50%), Gaps = 18/138 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K+++ M M + GL++PQVG+ R+F+V D S V
Sbjct: 28 IKVLVEDMIETMYENNGVGLASPQVGILKRIFVVDAMDGAGS----------------RV 71
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
+INPE IL+ + T EGC SL V R K+++ LD G AEG+ AR
Sbjct: 72 FINPE--ILEKSGEQTDEEGCLSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEGFLARA 129
Query: 121 IQHEMDHLDGLLFTDSML 138
IQHE DHL+G+LF D L
Sbjct: 130 IQHEYDHLEGVLFIDHEL 147
>sp|P43522|DEF_THETH Peptide deformylase OS=Thermus thermophilus GN=def PE=1 SV=1
Length = 192
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 10/125 (8%)
Query: 19 GLSAPQVGLPLRLFI-VAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDK-VT 76
GL+APQ+GL RLF+ V + D E E +++ + + V NP ++ Y++ V
Sbjct: 44 GLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVRRVY---VVANP---VITYREGLVE 97
Query: 77 ALEGCASLKSLQAK-VPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC SL L ++ VPR ++++ DE G+ EG+ AR+ QHE+DHLDG+LF +
Sbjct: 98 GTEGCLSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFE 157
Query: 136 SMLPK 140
LPK
Sbjct: 158 R-LPK 161
>sp|Q5SLH2|DEF_THET8 Peptide deformylase OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=def PE=3 SV=1
Length = 192
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 10/125 (8%)
Query: 19 GLSAPQVGLPLRLFI-VAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDK-VT 76
GL+APQ+GL RLF+ V + D E E +++ + + V NP ++ Y++ V
Sbjct: 44 GLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVRRVY---VVANP---VITYREGLVE 97
Query: 77 ALEGCASLKSLQAK-VPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC SL L ++ VPR ++++ DE G+ EG+ AR+ QHE+DHLDG+LF +
Sbjct: 98 GTEGCLSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFE 157
Query: 136 SMLPK 140
LPK
Sbjct: 158 R-LPK 161
>sp|Q72H33|DEF_THET2 Peptide deformylase OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=def PE=3 SV=1
Length = 192
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 10/125 (8%)
Query: 19 GLSAPQVGLPLRLFI-VAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDK-VT 76
GL+APQ+GL RLF+ V + D E E +++ + + V NP ++ Y++ V
Sbjct: 44 GLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVRRVY---VVANP---VITYREGLVE 97
Query: 77 ALEGCASLKSLQAK-VPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC SL L ++ VPR ++++ DE G+ EG+ AR+ QHE+DHLDG+LF +
Sbjct: 98 GTEGCLSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFE 157
Query: 136 SMLPK 140
LPK
Sbjct: 158 R-LPK 161
>sp|B2S3Z6|DEF_TREPS Peptide deformylase OS=Treponema pallidum subsp. pallidum (strain
SS14) GN=def PE=3 SV=1
Length = 162
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 19/140 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I M VM+ GL+APQVG +R+F+V D++ ++AF
Sbjct: 25 LRAFISGMFRVMRGAGGVGLAAPQVGRTVRVFVV------------DVEH-HVRAF---- 67
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP++ +++ + EGC S+ + +V R R+V + LDE GK + A+G AR+
Sbjct: 68 -INPQITAAS-EEQSSYEEGCLSIPHIYERVLRPRRVSVQYLDENGKRCAVDADGILARV 125
Query: 121 IQHEMDHLDGLLFTDSMLPK 140
IQHE DHLDG+LF D + K
Sbjct: 126 IQHEYDHLDGILFLDRIDEK 145
>sp|O83738|DEF_TREPA Peptide deformylase OS=Treponema pallidum (strain Nichols) GN=def
PE=1 SV=1
Length = 162
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 19/140 (13%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ I M VM+ GL+APQVG +R+F+V D++ ++AF
Sbjct: 25 LRAFISGMFRVMRGAGGVGLAAPQVGRTVRVFVV------------DVEH-HVRAF---- 67
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP++ +++ + EGC S+ + +V R R+V + LDE GK + A+G AR+
Sbjct: 68 -INPQITAAS-EEQSSYEEGCLSIPHIYERVLRPRRVSVQYLDENGKRCAVDADGILARV 125
Query: 121 IQHEMDHLDGLLFTDSMLPK 140
IQHE DHLDG+LF D + K
Sbjct: 126 IQHEYDHLDGILFLDRIDEK 145
>sp|Q7W4K0|DEF2_BORPA Peptide deformylase 2 OS=Bordetella parapertussis (strain 12822 /
ATCC BAA-587 / NCTC 13253) GN=def2 PE=3 SV=1
Length = 176
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ L+L I F E + + + A P +
Sbjct: 28 LRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIFGF--------ERNDRYPDAPAVPRTI 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP ++ L + EGC S+ L+ VPRYR ++ +G D G+ AEG+ AR+
Sbjct: 80 LCNPVIEPLS-DEMEDGWEGCLSVPGLRGLVPRYRHIRYSGYDPAGQRIEREAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHECDHLIGRLY 151
>sp|Q7W0Q0|DEF1_BORPE Peptide deformylase 1 OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=def1 PE=3 SV=1
Length = 176
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ L+L I F E + + + A P +
Sbjct: 28 LRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIFGF--------ERNDRYPDAPAVPRTI 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP ++ L + EGC S+ L+ VPRYR ++ +G D G+ AEG+ AR+
Sbjct: 80 LCNPVIEPLS-DEMEDGWEGCLSVPGLRGLVPRYRHIRYSGYDPAGQRIEREAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHECDHLIGRLY 151
>sp|Q7WG25|DEF2_BORBR Peptide deformylase 2 OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=def2 PE=3 SV=1
Length = 176
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M GL+APQ+G+ L+L I F E + + + A P +
Sbjct: 28 LRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIFGF--------ERNDRYPDAPAVPRTI 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
NP ++ L + EGC S+ L+ VPRYR ++ +G D G+ AEG+ AR+
Sbjct: 80 LCNPVIEPLS-GEMEDGWEGCLSVPGLRGLVPRYRHIRYSGYDPAGQRIEREAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G L+
Sbjct: 139 VQHECDHLIGRLY 151
>sp|Q8XZJ6|DEF2_RALSO Peptide deformylase 2 OS=Ralstonia solanacearum (strain GMI1000)
GN=def2 PE=3 SV=1
Length = 177
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M GL+APQ+G+ L++ I F D + + + A P V
Sbjct: 28 LTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGF-DRNDRYPDA-------PAVPKTV 79
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP ++ L + EGC S+ L+ VPRY +++ TG D+ G AEG+ AR+
Sbjct: 80 LINPTIEPLSDAME-DGWEGCLSVPGLRGVVPRYTRLRYTGYDQHGHAIDRIAEGFHARV 138
Query: 121 IQHEMDHLDGLLF 133
+QHE DHL G+L+
Sbjct: 139 VQHECDHLQGILY 151
>sp|A0M3P3|DEF_GRAFK Peptide deformylase OS=Gramella forsetii (strain KT0803) GN=def
PE=3 SV=1
Length = 196
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 81/147 (55%), Gaps = 6/147 (4%)
Query: 19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHM--VWINPEMKILDYKDKVT 76
GL+APQVGLP+R+F++ DP + ++ + E + + V+INP++ I + ++
Sbjct: 45 GLAAPQVGLPVRMFMI---DPAPFADDEELDEAEKKVLMDLRKVFINPQI-IEETGEEWA 100
Query: 77 ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
EGC S+ ++ V R + + DE + + T G AAR+IQHE DH++G+LFTD
Sbjct: 101 FSEGCLSIPEVREDVFRQPDITIEYHDENWEKHTETYSGLAARVIQHEYDHIEGILFTDK 160
Query: 137 MLPKSLECVCWQDINLQNGLLELRYYM 163
+ + + N+ G + + Y M
Sbjct: 161 LSSLKKRLIKSKLANISKGKINVEYKM 187
>sp|Q9FUZ2|DEF1B_ARATH Peptide deformylase 1B, chloroplastic OS=Arabidopsis thaliana
GN=PDF1B PE=1 SV=2
Length = 273
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M +VM + D GLSAPQVGL ++L + +P EG +V
Sbjct: 105 LKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVF---NPAGEPGEGK----------EIV 151
Query: 61 WINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
+NP KI Y DK+ EGC S + A+V R + V++ D TG+ S + AR
Sbjct: 152 LVNP--KIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPAR 209
Query: 120 IIQHEMDHLDGLLFTDSMLPKSLECV 145
I QHE DHL+G+LF D M + L+ +
Sbjct: 210 IFQHEYDHLEGVLFFDRMTDQVLDSI 235
>sp|Q31DB4|DEF_PROM9 Peptide deformylase OS=Prochlorococcus marinus (strain MIT 9312)
GN=def PE=3 SV=1
Length = 201
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 16/124 (12%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQ+G+ L ++ FE A ++ INPE I DY + +
Sbjct: 72 IGLAAPQIGINKELLVIDV-------------NFEDSAAEPLILINPE--ITDYGTTLNS 116
Query: 78 LE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
E GC S+ + V R ++L DE G+P A+G AR IQHEMDHL+G+LF D
Sbjct: 117 YEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLLARCIQHEMDHLNGILFVDR 176
Query: 137 MLPK 140
+ K
Sbjct: 177 VTSK 180
>sp|Q8NQ46|DEF1_CORGL Peptide deformylase 1 OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=def1 PE=3 SV=1
Length = 169
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 15/139 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+ +I M + M+ GL+A QVG+ R+F+ + S EG ++ H+
Sbjct: 28 LSTLIDDMFDTMEDAGGVGLAANQVGVLRRVFVF-----DTSHQEGGLRG-------HV- 74
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP + L +D T EGC S+ + A+ RY V+L+G D G P + A G AR
Sbjct: 75 -INPVWEPL-TEDTQTGKEGCLSIPDVSAETTRYETVRLSGQDRDGNPVGFVANGLLARC 132
Query: 121 IQHEMDHLDGLLFTDSMLP 139
IQHE DHLDG+LF + P
Sbjct: 133 IQHETDHLDGVLFLKRLDP 151
>sp|B1I504|DEF_DESAP Peptide deformylase OS=Desulforudis audaxviator (strain MP104C)
GN=def PE=3 SV=1
Length = 154
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 18/130 (13%)
Query: 6 LQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPE 65
+ + + M+R GL+APQ+G+ R+ +V DPE++ +V INPE
Sbjct: 33 VNLVDTMRRSGGVGLAAPQIGVSKRVIVVE--DPEKN---------------PIVLINPE 75
Query: 66 MKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEM 125
+ L+ DK TA EGC S+ + +V R + + G + GK ++ EG+ AR QHE+
Sbjct: 76 IVRLE-GDKETAEEGCLSVPGVWGQVERRMCLTVRGYNLEGKQVAYLVEGFTARAFQHEI 134
Query: 126 DHLDGLLFTD 135
DHLDG++F D
Sbjct: 135 DHLDGIVFLD 144
>sp|Q7V3K7|DEF_PROMP Peptide deformylase OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=def PE=3 SV=1
Length = 201
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 16/124 (12%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQ+G+ L ++ FE A ++ INPE I DY + +
Sbjct: 72 IGLAAPQIGIKKELLVIDV-------------NFEDAAAEPLILINPE--ITDYGTTLNS 116
Query: 78 LE-GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDS 136
E GC S+ + V R ++L DE G+P A+G AR IQHEMDHL+G+LF D
Sbjct: 117 YEEGCLSIPGVYLNVVRPSTIKLRFRDEMGRPRKMKADGLLARCIQHEMDHLNGVLFVDR 176
Query: 137 MLPK 140
+ K
Sbjct: 177 VTSK 180
>sp|B2KD65|DEF_ELUMP Peptide deformylase OS=Elusimicrobium minutum (strain Pei191)
GN=def PE=3 SV=1
Length = 176
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
I+ M + F GLSA Q+GL R+ ++ P+ K E Q F V IN
Sbjct: 33 ILQDMHDTCMSFQGAGLSANQIGLTHRIAMIFIPE--------KTPKGEAQKFKRYVVIN 84
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P I+ K VT EGC SL L ++ R + + L+E G P A+G+ A+ +QH
Sbjct: 85 PV--IVSKKGCVTDEEGCLSLPGLWVEIERAESIVVHCLNEKGLPVEIHAKGFLAKALQH 142
Query: 124 EMDHLDGLLFTDSMLPK 140
E+DHLDG +F D PK
Sbjct: 143 EIDHLDGKIFIDHADPK 159
>sp|B3EPG5|DEF_CHLPB Peptide deformylase OS=Chlorobium phaeobacteroides (strain BS1)
GN=def PE=3 SV=1
Length = 185
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 76/155 (49%), Gaps = 20/155 (12%)
Query: 4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
+I M M+ + GL+APQVG+ LRL +V S +EG +A MV IN
Sbjct: 30 LISNMLESMRNAEGIGLAAPQVGVSLRLIVVDL-----SLAEG------YEAASPMVVIN 78
Query: 64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
P IL K + EGC S+ ++ V R +QL D + + AAR+IQH
Sbjct: 79 PH--ILSVKSFNSMEEGCLSIPDVRGDVVRPSAIQLKYRDRNFEECIGEFDRLAARVIQH 136
Query: 124 EMDHLDGLLFTDSM-------LPKSLECVCWQDIN 151
E+DHLDG LF D M + K L+ + +IN
Sbjct: 137 EIDHLDGTLFVDRMQRRDRRKIQKELDALSRGEIN 171
>sp|B1ZMD5|DEF_OPITP Peptide deformylase OS=Opitutus terrae (strain DSM 11246 / PB90-1)
GN=def PE=3 SV=1
Length = 192
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 1/136 (0%)
Query: 7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS-EGDIKKFEMQAFPHMVWINPE 65
+M M+ GL+A Q+G P++L +V E F+ E D K + M+ NPE
Sbjct: 33 EMLATMQEAAGIGLAAQQIGRPVQLCVVDLRRAEIDFTWELDGAKPPLDLIMPMIITNPE 92
Query: 66 MKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEM 125
+ D EGC S ++ VPR + + DE G P + +G AR IQHE+
Sbjct: 93 ITPDRETDVYLVEEGCLSFPKIRGDVPRPDAITVRYQDEHGTPHTLHCDGLLARCIQHEV 152
Query: 126 DHLDGLLFTDSMLPKS 141
DHL+G+LF D M K+
Sbjct: 153 DHLNGVLFIDRMEKKT 168
>sp|A7NPM9|DEF_ROSCS Peptide deformylase OS=Roseiflexus castenholzii (strain DSM 13941 /
HLO8) GN=def PE=3 SV=1
Length = 185
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 73/139 (52%), Gaps = 6/139 (4%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
+K ++ M M + GL+APQ+G+ RL ++A P E +G K E+ V
Sbjct: 32 LKQLVADMFETMHAANGVGLAAPQIGVTQRLAVIAIPPMMEERPDG--TKVEVAPEQTFV 89
Query: 61 WINPEM-KILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDS-WTAEGWAA 118
INPE+ K D +D LEGC SL +VPR V + D G+ A G A
Sbjct: 90 LINPEIVKASDQED--VGLEGCLSLPGWYGEVPRAAWVTVEYTDLNGRRQRIRRATGLLA 147
Query: 119 RIIQHEMDHLDGLLFTDSM 137
R +QHE+DHLDG+LFT+ +
Sbjct: 148 RALQHEIDHLDGVLFTERI 166
>sp|Q0I7A5|DEF_SYNS3 Peptide deformylase OS=Synechococcus sp. (strain CC9311) GN=def
PE=3 SV=1
Length = 202
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Query: 18 FGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTA 77
GL+APQVG+ +L ++ FE + P +V INPE+ T
Sbjct: 72 IGLAAPQVGVHQQLLVIDL-------------DFETPSTPPLVLINPEITTCSASVD-TY 117
Query: 78 LEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
EGC S+ + V R +QL+ DE G+P + A+G AR IQHEMDHL G+LF D +
Sbjct: 118 EEGCLSIPGVYLDVVRPTAIQLSFRDEMGRPRTMKADGLMARCIQHEMDHLRGVLFVDRV 177
>sp|Q9RD27|DEF1_STRCO Peptide deformylase 1 OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=def1 PE=3 SV=1
Length = 218
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Query: 19 GLSAPQVGLPLRLFIVAFPDP---EESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
GL+APQVG+ LR+ ++ P P E + G + + P V +NP + +
Sbjct: 68 GLAAPQVGVGLRVAVIEDPAPVPDEVRVARGRVPQ------PFRVLVNPSYEPAG-AGRA 120
Query: 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTD 135
EGC S+ QA V R+ +V+L DE G+ GW ARI+QHE DHLDG L+ D
Sbjct: 121 AFFEGCLSVPGWQAVVARHAEVRLRAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLD 180
Query: 136 SMLPKSL 142
+SL
Sbjct: 181 RAELRSL 187
>sp|P94601|DEF_FREDI Peptide deformylase OS=Fremyella diplosiphon GN=def PE=3 SV=1
Length = 187
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 14/137 (10%)
Query: 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
++ +I M M D GL+APQVG+ +L ++ +P+ A P +V
Sbjct: 41 LRQLIRDMLQTMYSKDGIGLAAPQVGIHKQLIVIDL-EPDNP------------ANPPLV 87
Query: 61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
INP +K + K+ A EGC S+ ++ V R V++ DE G+P + A AR
Sbjct: 88 LINPTIKQVS-KEICVAQEGCLSIPNVYMDVKRPEVVEIAYKDENGRPKTLKATDLLARC 146
Query: 121 IQHEMDHLDGLLFTDSM 137
IQHEMDHL+G++F D +
Sbjct: 147 IQHEMDHLNGVVFVDRV 163
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,736,231
Number of Sequences: 539616
Number of extensions: 2402391
Number of successful extensions: 5387
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4598
Number of HSP's gapped (non-prelim): 486
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)