Query psy14392
Match_columns 164
No_of_seqs 103 out of 1021
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 18:41:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0242 Def N-formylmethionyl- 100.0 3.8E-54 8.3E-59 337.3 10.6 137 1-150 28-164 (168)
2 PRK12846 peptide deformylase; 100.0 5.9E-53 1.3E-57 330.6 13.2 129 1-145 29-157 (165)
3 PRK14595 peptide deformylase; 100.0 1.2E-52 2.6E-57 327.9 13.7 123 1-141 28-150 (162)
4 PRK14597 peptide deformylase; 100.0 9.5E-53 2.1E-57 329.6 12.5 132 1-151 25-156 (166)
5 PRK14598 peptide deformylase; 100.0 1.3E-52 2.8E-57 334.3 13.2 148 1-161 27-174 (187)
6 PRK00150 def peptide deformyla 100.0 4E-52 8.8E-57 325.9 13.1 127 1-143 28-155 (165)
7 TIGR00079 pept_deformyl peptid 100.0 4.3E-52 9.4E-57 324.6 13.1 128 1-143 26-153 (161)
8 PF01327 Pep_deformylase: Poly 100.0 5.5E-52 1.2E-56 322.3 9.8 129 1-141 27-155 (156)
9 cd00487 Pep_deformylase Polype 100.0 2.8E-50 6E-55 308.2 13.2 119 1-133 23-141 (141)
10 PRK14596 peptide deformylase; 100.0 2.1E-50 4.5E-55 324.3 12.2 137 1-142 27-167 (199)
11 KOG3137|consensus 100.0 5.7E-50 1.2E-54 321.7 9.4 155 1-156 106-261 (267)
12 PRK09218 peptide deformylase; 100.0 7.9E-47 1.7E-51 287.6 12.1 110 3-133 25-136 (136)
13 COG4740 Predicted metalloprote 98.2 1.2E-06 2.6E-11 67.5 2.7 71 57-130 74-159 (176)
14 KOG2848|consensus 59.1 6.2 0.00014 33.5 1.8 38 127-164 133-171 (276)
15 smart00666 PB1 PB1 domain. Pho 55.5 15 0.00032 24.4 2.9 30 95-124 39-68 (81)
16 KOG0400|consensus 50.6 4.1 8.9E-05 31.2 -0.5 29 2-30 27-55 (151)
17 cd06396 PB1_NBR1 The PB1 domai 48.7 23 0.00051 24.7 3.0 26 96-121 39-64 (81)
18 cd06401 PB1_TFG The PB1 domain 46.8 32 0.0007 24.0 3.5 30 93-122 40-69 (81)
19 PF01078 Mg_chelatase: Magnesi 45.7 15 0.00032 29.9 2.0 35 128-162 106-140 (206)
20 PF11730 DUF3297: Protein of u 43.0 28 0.00061 23.6 2.6 36 74-116 31-66 (71)
21 cd06407 PB1_NLP A PB1 domain i 42.9 34 0.00074 23.6 3.2 27 95-121 39-65 (82)
22 cd06398 PB1_Joka2 The PB1 doma 41.8 41 0.0009 23.7 3.5 32 92-123 41-72 (91)
23 cd06402 PB1_p62 The PB1 domain 41.7 36 0.00078 24.0 3.2 29 95-123 46-74 (87)
24 cd05992 PB1 The PB1 domain is 36.3 44 0.00096 21.9 2.9 30 95-124 39-68 (81)
25 COG0606 Predicted ATPase with 35.9 23 0.0005 32.5 1.8 33 129-161 284-316 (490)
26 cd06409 PB1_MUG70 The MUG70 pr 35.3 70 0.0015 22.5 3.8 31 93-123 40-70 (86)
27 cd06404 PB1_aPKC PB1 domain is 34.7 51 0.0011 23.2 3.0 40 76-115 14-59 (83)
28 PF12388 Peptidase_M57: Dual-a 32.0 28 0.00061 28.5 1.6 53 79-140 104-156 (211)
29 PF04986 Y2_Tnp: Putative tran 31.0 76 0.0016 24.9 3.8 31 94-124 129-162 (183)
30 PF00564 PB1: PB1 domain; Int 30.0 41 0.00089 22.2 1.9 30 94-123 39-68 (84)
31 cd04327 ZnMc_MMP_like_3 Zinc-d 29.6 62 0.0013 25.5 3.1 50 79-134 58-109 (198)
32 PF10135 Rod-binding: Rod bind 28.3 35 0.00075 20.9 1.2 18 5-22 27-44 (49)
33 PF13670 PepSY_2: Peptidase pr 28.1 65 0.0014 21.7 2.7 28 96-123 55-82 (83)
34 PF13582 Reprolysin_3: Metallo 24.4 40 0.00087 23.9 1.1 16 116-131 106-121 (124)
35 cd03074 PDI_b'_Calsequestrin_C 24.2 38 0.00083 25.2 0.9 19 15-39 75-93 (120)
36 PF13688 Reprolysin_5: Metallo 22.8 50 0.0011 25.5 1.4 20 114-133 139-158 (196)
37 PF06486 DUF1093: Protein of u 22.6 1E+02 0.0022 20.6 2.7 21 96-116 29-49 (78)
38 cd06397 PB1_UP1 Uncharacterize 22.1 91 0.002 21.9 2.4 21 96-116 39-59 (82)
39 COG2941 CAT5 Ubiquinone biosyn 21.9 37 0.00079 27.6 0.5 13 117-129 76-88 (204)
40 COG2916 Hns DNA-binding protei 21.6 39 0.00085 25.6 0.6 34 94-127 85-118 (128)
41 PRK05201 hslU ATP-dependent pr 21.4 76 0.0017 28.9 2.4 51 106-156 211-288 (443)
42 PF14657 Integrase_AP2: AP2-li 20.2 1.6E+02 0.0034 17.6 3.0 22 96-117 3-25 (46)
43 KOG0022|consensus 20.0 21 0.00045 31.5 -1.4 42 15-65 201-245 (375)
No 1
>COG0242 Def N-formylmethionyl-tRNA deformylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-54 Score=337.33 Aligned_cols=137 Identities=34% Similarity=0.549 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++|++||++||++++|+||||||||+++|+|||+++.... +..++.+||||+|++.|++ ..+.+||
T Consensus 28 l~~li~dM~etm~~~~GVGLAApQIGi~kri~vi~~~~~~~------------~~~~~~vlINP~I~~~~~~-~~~~~EG 94 (168)
T COG0242 28 LRQLIDDMLETMYAAEGVGLAAPQIGISKRIFVIDVEEDGR------------PKEPPLVLINPEIISKSEE-TLTGEEG 94 (168)
T ss_pred HHHHHHHHHHHHHhCCCeeeeehhcCceeeEEEEEccCccC------------cCcCceEEECCEEeecCCc-ccccCcc
Confidence 47899999999999999999999999999999999976421 0123589999999998777 8899999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchhhhh
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDI 150 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~ 150 (164)
|||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||||+||+||+++.+.+.+.-+..
T Consensus 95 CLSvP~~~~~V~R~~~I~V~~~D~~G~~~~~~a~G~lA~~iQHEiDHLnGvlf~D~l~~~k~~~~~~~~~ 164 (168)
T COG0242 95 CLSVPGVRGEVERPERITVKYLDRNGKPQELEAEGLLARCIQHEIDHLNGVLFIDRLSPLKRDRLKKKLK 164 (168)
T ss_pred eEeecCceeeeecccEEEEEEEcCCCCEEEEEEcCceeEEeEeeccccCcEEeeeecChhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999855544444433
No 2
>PRK12846 peptide deformylase; Reviewed
Probab=100.00 E-value=5.9e-53 Score=330.63 Aligned_cols=129 Identities=38% Similarity=0.636 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++|++||++||++++|+||||||||+++|+||++.++.. .++.++|||+|+..|++ ....+||
T Consensus 29 ~~~li~dM~~tm~~~~gvGLAApQVG~~~ri~vi~~~~~~---------------~~~~vliNP~I~~~s~~-~~~~~EG 92 (165)
T PRK12846 29 LQALIDDMFETMRAADGVGLAAPQIGVSLRVVVIDLGDDR---------------VPPTVLINPEITELSPE-EEVGWEG 92 (165)
T ss_pred HHHHHHHHHHHHHhCCCcEEeccccCCceeEEEEEccCCC---------------CcceEEECCEEEcCCCC-EeccCCC
Confidence 4789999999999999999999999999999999875431 12479999999998887 8888999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccc
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECV 145 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~ 145 (164)
|||+||+++.|+||.+|+|+|+|++|++++.+++||+|||+|||+|||+|+||+||+++.+.+.+
T Consensus 93 CLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~Drl~~~~~~~~ 157 (165)
T PRK12846 93 CLSVPGLRGEVERPARVRVRAQDRDGKPIEIEAEGFLARVLQHEIDHLDGILYTDRLSRLKRERA 157 (165)
T ss_pred CCccCCcceeecCcceEEEEEECCCCCEEEEEEeCHHHhHHhHHhHhcCCEeehhhCCHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999997654433
No 3
>PRK14595 peptide deformylase; Provisional
Probab=100.00 E-value=1.2e-52 Score=327.87 Aligned_cols=123 Identities=24% Similarity=0.374 Sum_probs=114.7
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++||+||++||++++|+||||||||+++||||++.+.. ++.++|||+|++.|++ ....+||
T Consensus 28 l~~li~dM~~tm~~~~gvGLAApQVG~~~ri~vi~~~~~-----------------~~~vlINP~I~~~s~~-~~~~~EG 89 (162)
T PRK14595 28 LKRLLQDLEDTMYAQEAAALCAPQIGQSLQVAIIDMEME-----------------GLLQLVNPKIISQSNE-TITDLEG 89 (162)
T ss_pred HHHHHHHHHHHHhhCCCcEEechhcCCceeEEEEEccCC-----------------CceEEECCeeecCCCC-EeeCCcC
Confidence 478999999999999999999999999999999987421 1469999999999988 8888999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccc
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKS 141 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~ 141 (164)
|||+||+++.|+||.+|+|+|+|++|++++++++||.|||+|||+|||+|+||+||+++..
T Consensus 90 CLSvPg~~~~V~R~~~I~v~~~D~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~Drl~~~~ 150 (162)
T PRK14595 90 SITLPDVYGEVTRSKMIVVESYDVNGNKVELTAYDDVARMILHIIDQMNGIPFTERADRIL 150 (162)
T ss_pred CccCCCcceEecCCCEEEEEEECCCCCEEEEEEeCHHHHHHHHHhHccCCEEEeeecCccc
Confidence 9999999999999999999999999999999999999999999999999999999997643
No 4
>PRK14597 peptide deformylase; Provisional
Probab=100.00 E-value=9.5e-53 Score=329.63 Aligned_cols=132 Identities=37% Similarity=0.502 Sum_probs=118.7
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++|++||++||++++|+||||||||+++|+||++... .+.+||||+|+..|++ ....+||
T Consensus 25 l~~li~dM~~tm~~~~GvGLAApQIGv~~ri~vi~~~~------------------~~~v~INP~I~~~s~~-~~~~~EG 85 (166)
T PRK14597 25 LKKTIEEMIETMYHYDGVGLAAPQVGISLRFFVMDDGS------------------GPKVVINPEIIEKSEE-KEIAEEG 85 (166)
T ss_pred HHHHHHHHHHHHHhCCCcEEehhhcCCceeEEEEEcCC------------------CceEEECCeeccCCCC-cccCCCC
Confidence 47899999999999999999999999999999998521 1369999999998887 7788999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchhhhhh
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~~ 151 (164)
|||+||+++.|+||.+|+|+|+|++|++++.+++||+|||+|||+|||+|+||+||+++.....+..++.+
T Consensus 86 CLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~lfiDrl~~~~~~~~~~~~~~ 156 (166)
T PRK14597 86 CLSFPEIFEDVERSKWVKVRYQDERGEVVEELLEGYAARIFQHEYDHLNGVLFIDRLPPAKRLLLRKKLMD 156 (166)
T ss_pred CCccCCCceEecCCCEEEEEEECCCCCEEEEEEeCHHHHHHHHHhHhhCCEeehhccChhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998655544444443
No 5
>PRK14598 peptide deformylase; Provisional
Probab=100.00 E-value=1.3e-52 Score=334.28 Aligned_cols=148 Identities=32% Similarity=0.416 Sum_probs=126.4
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++|++||++||++++|+||||||||+++|+|||+.+.... .+ ..++.+||||+|+..|. ....+||
T Consensus 27 l~~li~dM~~tm~~~~GvGLAApQVG~~~Ri~vid~~~~~~-~~----------~~~~~v~INP~I~~~s~--~~~~~EG 93 (187)
T PRK14598 27 IEELIASMFESMYNASGIGLAAPQVGRSLRLLVVDVSCMKE-YE----------DEKPMVVINPHILAVKG--YNAMEEG 93 (187)
T ss_pred HHHHHHHHHHHHHhCCCeEEehhhcCCceeEEEEEcccccc-cc----------cccceEEECCeeccCCC--cccCCCC
Confidence 47899999999999999999999999999999999854321 00 11247999999998764 4558999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchhhhhhhhcCceeee
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELR 160 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~~~~~g~~~~~ 160 (164)
|||+||+++.|.||.+|+|+|+|++|++++.+++||+|||+|||+|||+|+||+||+++.+...+..++.++..+.....
T Consensus 94 CLSvPg~~~~V~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~LfiDrl~~~~~~~~~~~~~~~~~~~~~~~ 173 (187)
T PRK14598 94 CLSVPGVQGDVVRPSSITLKYRDEHFEERTEEFSGMMARVLQHEIDHLDGTLFVDRMQKRDRRKIQKELDAIAAGRVETD 173 (187)
T ss_pred CccCCCcceEEeccCEEEEEEECCCCCEEEEEEecHhhhHHhHhhhccCCEEEEEecChhhhHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999998777777776666655554433
Q ss_pred c
Q psy14392 161 Y 161 (164)
Q Consensus 161 ~ 161 (164)
|
T Consensus 174 ~ 174 (187)
T PRK14598 174 Y 174 (187)
T ss_pred C
Confidence 3
No 6
>PRK00150 def peptide deformylase; Reviewed
Probab=100.00 E-value=4e-52 Score=325.88 Aligned_cols=127 Identities=38% Similarity=0.563 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceee-eCee
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKV-TALE 79 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~-~~~E 79 (164)
+++|++||++||++++|+||||||||+++|+||++.++.. .++.++|||+|+..|++ .. ..+|
T Consensus 28 ~~~li~dm~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~---------------~~~~v~iNP~I~~~s~~-~~~~~~E 91 (165)
T PRK00150 28 LRKLIDDMFETMYAAPGVGLAAPQVGVSKRIIVIDVEDKE---------------GEPLVLINPEIISESSE-EYLTYEE 91 (165)
T ss_pred HHHHHHHHHHHHHhCCCcEEEhhhcCcceeEEEEEccCCC---------------CceeEEECCEEecCCCC-eeccCCC
Confidence 4789999999999999999999999999999999974431 02579999999988866 55 5899
Q ss_pred CCCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccc
Q psy14392 80 GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLE 143 (164)
Q Consensus 80 gCLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~ 143 (164)
||||+||+++.|+||.+|+|+|+|++|++++.+++||+|||+|||+|||+|+||+||+++....
T Consensus 92 GCLS~pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHE~DHL~G~l~~Drl~~~~~~ 155 (165)
T PRK00150 92 GCLSVPGVYGEVPRPERVTVKALDRDGKPFELEADGLLARCIQHEIDHLNGVLFIDRLSPLKRF 155 (165)
T ss_pred CCCccCCeeeEecCcceeEEEEECCCCCEEEEEEeCHhhhHHhHHhHhhCCEEeeeecChhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876443
No 7
>TIGR00079 pept_deformyl peptide deformylase. Peptide deformylase (EC 3.5.1.88), also called polypeptide deformylase, is a metalloenzyme that uses water to release formate from the N-terminal formyl-L-methionine of bacterial and chloroplast peptides. This enzyme should not be confused with formylmethionine deformylase (EC 3.5.1.31) which is active on free N-formyl methionine and has been reported from rat intestine.
Probab=100.00 E-value=4.3e-52 Score=324.57 Aligned_cols=128 Identities=38% Similarity=0.575 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++|++||++||++++|+||||||||+++||||++.++... .++.+||||+|+..|++ ....+||
T Consensus 26 ~~~l~~dM~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~--------------~~~~v~iNP~I~~~s~~-~~~~~EG 90 (161)
T TIGR00079 26 IRQQLDDMIETMYAEEGIGLAAPQVGIWKRMFVIHLEDDDK--------------EDPLVLINPKIIETSGE-KSGLEEG 90 (161)
T ss_pred HHHHHHHHHHHHHhCCCeEEehhhcCcceeEEEEEccCCcC--------------ccceEEECCeeccCCCc-EeccCcC
Confidence 47899999999999999999999999999999998754310 12469999999998887 7778899
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccc
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLE 143 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~ 143 (164)
|||+||+++.|.||.+|+|+|+|++|++++.+++||+|||+|||+|||+|+||+||+++.+..
T Consensus 91 CLS~Pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~l~~D~l~~~~~~ 153 (161)
T TIGR00079 91 CLSVPGVYGYVPRPEKVKIRGFDRFGKPFTIEASGLLARCIQHEMDHLNGVLFVDRISPLKPE 153 (161)
T ss_pred CCccCCccceecChhheEEEEECCCCCEEEEEEeCHHHhHHhHHhHhcCCEeeeeecChhhhh
Confidence 999999999999999999999999999999999999999999999999999999999975443
No 8
>PF01327 Pep_deformylase: Polypeptide deformylase; InterPro: IPR023635 Peptide deformylase (PDF) is an essential metalloenzyme required for the removal of the formyl group at the N terminus of nascent polypeptide chains in eubacteria: 3.5.1.88 from EC []. The enzyme acts as a monomer and binds a single zinc ion, catalysing the reaction:: N-formyl-L-methionine + H2O = formate + methionyl peptide Catalytic efficiency strongly depends on the identity of the bound metal []. The structure of these enzymes is known [, ]. PDF, a member of the zinc metalloproteases family, comprises an active core domain of 147 residues and a C-terminal tail of 21 residue. The 3D fold of the catalytic core has been determined by X-ray crystallography and NMR. Overall, the structure contains a series of anti-parallel beta- strands that surround two perpendicular alpha-helices. The C-terminal helix contains the characteristic HEXXH motif of metalloenzymes, which is crucial for activity. The helical arrangement, and the way the histidine residues bind the zinc ion, is reminiscent of other metalloproteases, such as thermolysin or metzincins. However, the arrangement of secondary and tertiary structures of PDF, and the positioning of its third zinc ligand (a cysteine residue), are quite different. These discrepancies, together with notable biochemical differences, suggest that PDF constitutes a new class of zinc-metalloproteases. [].; PDB: 2OS1_A 2OS0_A 1LME_B 3QU1_A 1N5N_B 1S17_B 1LRY_A 1IX1_A 1WS1_A 1WS0_A ....
Probab=100.00 E-value=5.5e-52 Score=322.25 Aligned_cols=129 Identities=41% Similarity=0.679 Sum_probs=113.5
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++++++|++||++++|+||||||||+++|+||++.++....... +.++||||+|+..|.+ +..+|||
T Consensus 27 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~-----------~~~v~INP~I~~~s~~-~~~~~Eg 94 (156)
T PF01327_consen 27 IKQLIDDMFETMYAANGVGLAAPQIGIPKRIFVIDIPDEKPEPSE-----------PETVLINPKITSSSEE-TVEDWEG 94 (156)
T ss_dssp HHHHHHHHHHHHHHTTBSEEEGGGGTS-BSEEEEEEETTSSSESE-----------EEEEEEEEEEEESSEE-EEEEEEE
T ss_pred HHHHHHHHHHHHHHhccceEehhhcCchheEEEEecCcccccCCc-----------cceEEECCEEecccCC-cCccccC
Confidence 478999999999999999999999999999999998776421110 0169999999988887 9999999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccc
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKS 141 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~ 141 (164)
|||+||+++.|+||.+|+|+|+|++|++++++++||.|||+|||+|||+|+||+|||++.+
T Consensus 95 ClS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~ 155 (156)
T PF01327_consen 95 CLSVPGIRGKVERPKKITVRYYDLDGKPIELEAEGFLARCIQHEIDHLNGILFIDRLSPKK 155 (156)
T ss_dssp ETTSTTEEEEEEEESEEEEEEEETTS-EEEEEEEHHHHHHHHHHHHHHTT--GGGGSSHHH
T ss_pred CCccCCccccCCCcceEEEEEECCCCeEEEEEEccccEEeeeehhhhhCCEehhhccCccC
Confidence 9999999999999999999999999999999999999999999999999999999998764
No 9
>cd00487 Pep_deformylase Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II) as the catalytic metal ion, which can be replaced with a nickel or cobalt ion with no loss of activity. There are two types of peptide deformylases, types I and II, which differ in structure only in the outer surface of the domain. Because these enzymes are essential only in prokaryotes (although eukaryotic gene sequences have been found), they are a target for a new class of antibacterial agents.
Probab=100.00 E-value=2.8e-50 Score=308.24 Aligned_cols=119 Identities=41% Similarity=0.639 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++|++||++||++++|+||||||||+++|+|+++.++... ..++.+||||+|+..|++ ....+||
T Consensus 23 ~~~li~dm~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~-------------~~~~~v~INP~I~~~s~~-~~~~~Eg 88 (141)
T cd00487 23 LKQLIDDMFETMYAAPGVGLAAPQIGVSKRIFVIDVPDEEN-------------KEPPLVLINPEIIESSGE-TEYGEEG 88 (141)
T ss_pred HHHHHHHHHHHHHhCCCcEEEhhhcCCceeEEEEEcccccc-------------cccceEEECCeEeccCCC-EeeCCcC
Confidence 47899999999999999999999999999999999865310 123679999999998888 8778999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeee
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLF 133 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~ 133 (164)
|||+||+++.|+||.+|+|+|+|++|++++.+++||.|||+|||+|||+|+||
T Consensus 89 CLS~pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~ 141 (141)
T cd00487 89 CLSVPGYRGEVERPKKVTVRYLDEDGNPIELEAEGFLARCIQHEIDHLNGILF 141 (141)
T ss_pred CcCcCCcceEecCcCEEEEEEECCCCCEEEEEEeCHhhhhHhHHhHhhCCEEC
Confidence 99999999999999999999999999999999999999999999999999997
No 10
>PRK14596 peptide deformylase; Provisional
Probab=100.00 E-value=2.1e-50 Score=324.31 Aligned_cols=137 Identities=34% Similarity=0.536 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEE-cCCCCC-CCcchhhhhhhccc-CCcEEEEeceEEEecCceeeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVA-FPDPEE-SFSEGDIKKFEMQA-FPHMVWINPEMKILDYKDKVTA 77 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~-~~~~~~-~~~~~~~~~~~~~~-~~~~v~INP~I~~~s~e~~~~~ 77 (164)
+++|++||++||++++|+||||||||+++|||||+ .++... ...+.. + .... .++.+||||+|+..|++ ..+
T Consensus 27 l~~li~dM~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~-~--~~~~~~~~~vlINP~I~~~s~~--~~~ 101 (199)
T PRK14596 27 IRRLAEDMLETMFEARGVGLAAPQIGLSVRLFVAVEYADDEEEEEGEEA-P--LRSRVLREYVMVNPVITYRKGD--QSG 101 (199)
T ss_pred HHHHHHHHHHHHHhCCCcEEehhhcCCceeEEEEEeccCcccccccccc-c--cccccccceEEECCEEecCCCc--ccC
Confidence 47899999999999999999999999999999997 322110 000000 0 0000 12479999999985554 468
Q ss_pred eeCCCCcCCCcc-ccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCcccc
Q psy14392 78 LEGCASLKSLQA-KVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSL 142 (164)
Q Consensus 78 ~EgCLS~pg~~~-~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~ 142 (164)
+||||||||+++ .|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+|||++.+.
T Consensus 102 ~EGCLSvPg~~~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 167 (199)
T PRK14596 102 QEGCLSIPGLYEEGVPRARQVRVEYQDLDGQKRTLEAEGYLARVFQHEIDHLDGILFFDRLPKAKR 167 (199)
T ss_pred CcCcccccCccceeeeccCEEEEEEECCCCCEEEEEEeChhhhhhhhhhhhcCCEeehhcCCHHHH
Confidence 999999999986 89999999999999999999999999999999999999999999999987543
No 11
>KOG3137|consensus
Probab=100.00 E-value=5.7e-50 Score=321.73 Aligned_cols=155 Identities=35% Similarity=0.540 Sum_probs=144.6
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCC-CCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCee
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPE-ESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALE 79 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~-~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~E 79 (164)
||+|+++|+++|+..+||||||||||+|.|++|++.+... .+.+++....+.|.+.+..||+||++..+|++ .+.+.|
T Consensus 106 lq~lvd~m~~VMr~~~gVGLsAPQvGvp~q~~vle~~~alcrecP~~~ra~rqmepf~l~V~VNP~lk~~s~k-lv~F~E 184 (267)
T KOG3137|consen 106 LQNLVDAMFDVMRKTDGVGLSAPQVGVPVQLMVLEPAGALCRECPEPGRAERQMEPFKLIVLVNPKLKKYSDK-LVPFDE 184 (267)
T ss_pred HHHHHHHHHHHHHhCCCccccCcccCCceEEEEecChHHHHhcCCChhhhHhhccCCCeEEEecchHhhhccc-cccccc
Confidence 5899999999999999999999999999999999876643 33455556677889999999999999999999 999999
Q ss_pred CCCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchhhhhhhhcCc
Q psy14392 80 GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGL 156 (164)
Q Consensus 80 gCLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~~~~~g~ 156 (164)
||+||||++|.|+||+.|.|+++|.+|+.+++.++||.||+||||+|||+|.||+|+|++.+|+.+.|++.++.+|-
T Consensus 185 GClSv~Gf~A~V~R~q~V~i~g~D~~Ger~~~~aSgw~ARI~QHE~DHL~G~Lf~DkM~~rtf~~V~~~~~~l~~~~ 261 (267)
T KOG3137|consen 185 GCLSVPGFYAEVVRPQSVKIDGRDITGERFSISASGWPARIFQHEYDHLEGVLFFDKMTDRTFDSVREELEALEKKY 261 (267)
T ss_pred ccccccchhhcccccceEEEeeecCCCCEEEEecccchHHHHHhHhhhhcceeeeeecccHhHhHHHHhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998873
No 12
>PRK09218 peptide deformylase; Validated
Probab=100.00 E-value=7.9e-47 Score=287.63 Aligned_cols=110 Identities=26% Similarity=0.442 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhC--CCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 3 IIILQMKNVMKRF--DLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 3 ~li~~m~~tm~~~--~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+|++||++||+++ +|+||||||||+++|+||++... .+.+||||+|+..|++ . ..+||
T Consensus 25 ~li~dM~~tm~~~~~~gvGLAApQIGv~~ri~vi~~~~------------------~~~vlINP~I~~~s~~-~-~~~EG 84 (136)
T PRK09218 25 QLAQDLQDTLLANRDECVGMAANMIGVQKRIIIFSLGF------------------VPVVMFNPVIVSKSGP-Y-ETEEG 84 (136)
T ss_pred HHHHHHHHHHHhcCCCCEEEEHHHCCcCceEEEEECCC------------------CcEEEECCEEecCCCc-e-eCCcc
Confidence 6899999999998 58999999999999999998731 1369999999987765 5 57899
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeee
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLF 133 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~ 133 (164)
|||+||++ .|+||.+|+|+|+|++|++++.+++||+|||+|||+|||+|+|+
T Consensus 85 CLS~P~~~-~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~iQHEiDHL~G~L~ 136 (136)
T PRK09218 85 CLSLTGER-PTKRYEEITVKYLDRNWREQTQTFTGFTAQIIQHELDHCEGILI 136 (136)
T ss_pred ceecCCCc-cccCcceeEEEEECCCCCEEEEEEeChhhhhhhhHhhccCCEEC
Confidence 99999997 79999999999999999999999999999999999999999985
No 13
>COG4740 Predicted metalloprotease [General function prediction only]
Probab=98.16 E-value=1.2e-06 Score=67.53 Aligned_cols=71 Identities=25% Similarity=0.421 Sum_probs=58.6
Q ss_pred CcEEEEeceEEEecCceeeeCeeCCCCcCCCccccccCCeeEEEEE-------CC--------CCCeEEEEEechhhhhH
Q psy14392 57 PHMVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGL-------DE--------TGKPDSWTAEGWAARII 121 (164)
Q Consensus 57 ~~~v~INP~I~~~s~e~~~~~~EgCLS~pg~~~~V~R~~~I~v~y~-------d~--------~G~~~~~~~~g~~Ar~~ 121 (164)
..+.|+||+|+ +.+|++.-.|.|-+-.. +..|+||.+|+|+.- |. .-++.++.++|..|--+
T Consensus 74 ~~YLflNPeIi--~~EGt~~RlEKCG~r~e-Relv~RPyR~~vr~d~~l~a~vdPg~~~IRvreL~k~~lrl~G~pAy~~ 150 (176)
T COG4740 74 DLYLFLNPEII--RAEGTLTRLEKCGRRRE-RELVKRPYRLEVRHDGGLIARVDPGRRRIRVRELDKGTLRLEGIPAYNL 150 (176)
T ss_pred heeeeeChhhe--eccceEEehhhhcchHH-HHHhcCCeEEEEecCceEEEEECCccceEEEEecCCCeEEEecCccchh
Confidence 36899999998 46779999999998655 778999999998853 22 24456788999999999
Q ss_pred hhhhhhhCC
Q psy14392 122 QHEMDHLDG 130 (164)
Q Consensus 122 QHEiDHL~G 130 (164)
.||+.||.|
T Consensus 151 aHEleHLeg 159 (176)
T COG4740 151 AHELEHLEG 159 (176)
T ss_pred HHHHHHhhc
Confidence 999999997
No 14
>KOG2848|consensus
Probab=59.11 E-value=6.2 Score=33.47 Aligned_cols=38 Identities=11% Similarity=0.164 Sum_probs=32.9
Q ss_pred hhCCeeeeeccCcc-ccccchhhhhhhhcCceeeecccC
Q psy14392 127 HLDGLLFTDSMLPK-SLECVCWQDINLQNGLLELRYYMS 164 (164)
Q Consensus 127 HL~G~l~~Dr~~~~-~~~~~~~~~~~~~~g~~~~~~~~~ 164 (164)
-|.|+.|+||.+++ ..+++..-.+.+++++..+|.+|.
T Consensus 133 ~L~gvvfIdR~r~~~Ai~~l~~~~~~mkk~~~kvWvFPE 171 (276)
T KOG2848|consen 133 YLSGVVFIDRSRREKAIDTLDKCAERMKKENRKVWVFPE 171 (276)
T ss_pred HHcCceEEecCCHHHHHHHHHHHHHHHHhCCeeEEEccC
Confidence 47899999999875 677888999999999999998873
No 15
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=55.46 E-value=15 Score=24.43 Aligned_cols=30 Identities=23% Similarity=0.158 Sum_probs=25.8
Q ss_pred CeeEEEEECCCCCeEEEEEechhhhhHhhh
Q psy14392 95 RKVQLTGLDETGKPDSWTAEGWAARIIQHE 124 (164)
Q Consensus 95 ~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHE 124 (164)
..++++|.|++|..+++.-+.-+..++++-
T Consensus 39 ~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~ 68 (81)
T smart00666 39 QSFTLKYQDEDGDLVSLTSDEDLEEAIEEY 68 (81)
T ss_pred CCeEEEEECCCCCEEEecCHHHHHHHHHHH
Confidence 578999999999999999888888777763
No 16
>KOG0400|consensus
Probab=50.65 E-value=4.1 Score=31.21 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCCeeEecccCCccce
Q psy14392 2 KIIILQMKNVMKRFDLFGLSAPQVGLPLR 30 (164)
Q Consensus 2 ~~li~~m~~tm~~~~gvGLAApQIG~~~r 30 (164)
+...+||.+......--||.++|||+-.|
T Consensus 27 K~~~ddvkeqI~K~akKGltpsqIGviLR 55 (151)
T KOG0400|consen 27 KLTADDVKEQIYKLAKKGLTPSQIGVILR 55 (151)
T ss_pred hcCHHHHHHHHHHHHHcCCChhHceeeee
Confidence 34578999999998889999999998765
No 17
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=48.67 E-value=23 Score=24.68 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=21.6
Q ss_pred eeEEEEECCCCCeEEEEEechhhhhH
Q psy14392 96 KVQLTGLDETGKPDSWTAEGWAARII 121 (164)
Q Consensus 96 ~I~v~y~d~~G~~~~~~~~g~~Ar~~ 121 (164)
.+.++|+|.+|+++.++.+.-+--|+
T Consensus 39 ~f~lKYlDde~e~v~lssd~eLeE~~ 64 (81)
T cd06396 39 DIQIKYVDEENEEVSVNSQGEYEEAL 64 (81)
T ss_pred cceeEEEcCCCCEEEEEchhhHHHHH
Confidence 89999999999999999877554443
No 18
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=46.76 E-value=32 Score=24.05 Aligned_cols=30 Identities=20% Similarity=0.016 Sum_probs=23.8
Q ss_pred cCCeeEEEEECCCCCeEEEEEechhhhhHh
Q psy14392 93 RYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122 (164)
Q Consensus 93 R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~Q 122 (164)
....+.|+|.|++|.-++++-+--++-.+|
T Consensus 40 ~~~~flIKYkD~dGDlVTIts~~dL~~A~~ 69 (81)
T cd06401 40 SSDDVLIKYKDEDGDLITIFDSSDLSFAIQ 69 (81)
T ss_pred CcccEEEEEECCCCCEEEeccHHHHHHHHh
Confidence 346899999999999999988766655544
No 19
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=45.68 E-value=15 Score=29.94 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=29.0
Q ss_pred hCCeeeeeccCccccccchhhhhhhhcCceeeecc
Q psy14392 128 LDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYY 162 (164)
Q Consensus 128 L~G~l~~Dr~~~~~~~~~~~~~~~~~~g~~~~~~~ 162 (164)
-+|+||+|-+...+...++-=.+.+.+|+++|...
T Consensus 106 h~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~ 140 (206)
T PF01078_consen 106 HRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRA 140 (206)
T ss_dssp TTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEET
T ss_pred cCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEEC
Confidence 37999999999988888888888888999888653
No 20
>PF11730 DUF3297: Protein of unknown function (DUF3297); InterPro: IPR021724 This family is expressed in Proteobacteria and Actinobacteria. The function is not known.
Probab=42.99 E-value=28 Score=23.64 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=26.4
Q ss_pred eeeCeeCCCCcCCCccccccCCeeEEEEECCCCCeEEEEEech
Q psy14392 74 KVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGW 116 (164)
Q Consensus 74 ~~~~~EgCLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~ 116 (164)
...-.|-|.|--.++..+. ++.|..|++.+++++|-
T Consensus 31 r~nVeEYciSEGWvrv~~g-------ka~DR~G~Pl~iklkG~ 66 (71)
T PF11730_consen 31 RTNVEEYCISEGWVRVAAG-------KALDRRGNPLTIKLKGT 66 (71)
T ss_pred cccceeEeccCCEEEeecC-------cccccCCCeeEEEEcce
Confidence 5566889999655433332 35899999999999984
No 21
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=42.92 E-value=34 Score=23.62 Aligned_cols=27 Identities=19% Similarity=0.061 Sum_probs=23.4
Q ss_pred CeeEEEEECCCCCeEEEEEechhhhhH
Q psy14392 95 RKVQLTGLDETGKPDSWTAEGWAARII 121 (164)
Q Consensus 95 ~~I~v~y~d~~G~~~~~~~~g~~Ar~~ 121 (164)
..+.++|.|.+|+.+.++.+.-+.-|+
T Consensus 39 ~~f~LkY~Ddegd~v~ltsd~DL~eai 65 (82)
T cd06407 39 SAFDLKYLDDDEEWVLLTCDADLEECI 65 (82)
T ss_pred CeeEEEEECCCCCeEEeecHHHHHHHH
Confidence 589999999999999999988766654
No 22
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=41.79 E-value=41 Score=23.71 Aligned_cols=32 Identities=22% Similarity=0.124 Sum_probs=27.5
Q ss_pred ccCCeeEEEEECCCCCeEEEEEechhhhhHhh
Q psy14392 92 PRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123 (164)
Q Consensus 92 ~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QH 123 (164)
.+...+.++|.|.+|+.+.++-+.-+.-|+|.
T Consensus 41 ~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~ 72 (91)
T cd06398 41 SPDADLSLTYTDEDGDVVTLVDDNDLTDAIQY 72 (91)
T ss_pred CCCCcEEEEEECCCCCEEEEccHHHHHHHHHH
Confidence 34568889999999999999999988888875
No 23
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=41.75 E-value=36 Score=24.00 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=24.0
Q ss_pred CeeEEEEECCCCCeEEEEEechhhhhHhh
Q psy14392 95 RKVQLTGLDETGKPDSWTAEGWAARIIQH 123 (164)
Q Consensus 95 ~~I~v~y~d~~G~~~~~~~~g~~Ar~~QH 123 (164)
..+++.|.|++|..++++-+--+...++.
T Consensus 46 ~~ftlky~DeeGDlvtIssdeEL~~A~~~ 74 (87)
T cd06402 46 KNFQLFWKDEEGDLVAFSSDEELVMALGS 74 (87)
T ss_pred CcEEEEEECCCCCEEeecCHHHHHHHHHc
Confidence 58999999999999999888776655544
No 24
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=36.34 E-value=44 Score=21.89 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=25.0
Q ss_pred CeeEEEEECCCCCeEEEEEechhhhhHhhh
Q psy14392 95 RKVQLTGLDETGKPDSWTAEGWAARIIQHE 124 (164)
Q Consensus 95 ~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHE 124 (164)
..+.++|.|.+|..+++.-+.-+..++++-
T Consensus 39 ~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~ 68 (81)
T cd05992 39 VSFKLKYPDEDGDLVTISSDEDLEEAIEEA 68 (81)
T ss_pred CcEEEEeeCCCCCEEEeCCHHHHHHHHHHH
Confidence 688999999999999999877776666653
No 25
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=35.85 E-value=23 Score=32.54 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=29.1
Q ss_pred CCeeeeeccCccccccchhhhhhhhcCceeeec
Q psy14392 129 DGLLFTDSMLPKSLECVCWQDINLQNGLLELRY 161 (164)
Q Consensus 129 ~G~l~~Dr~~~~~~~~~~~~~~~~~~g~~~~~~ 161 (164)
+|+||+|-+...+.+.++.=-+.+.+|+..|..
T Consensus 284 ~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsR 316 (490)
T COG0606 284 NGVLFLDELPEFKRSILEALREPLENGKIIISR 316 (490)
T ss_pred CCEEEeeccchhhHHHHHHHhCccccCcEEEEE
Confidence 799999999998888888888889999988865
No 26
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=35.33 E-value=70 Score=22.48 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=27.2
Q ss_pred cCCeeEEEEECCCCCeEEEEEechhhhhHhh
Q psy14392 93 RYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123 (164)
Q Consensus 93 R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QH 123 (164)
+.....+.|.|-+|+.+.++.+.-+.-|+.|
T Consensus 40 ~~~~~~L~YlDDEgD~VllT~D~DL~e~v~i 70 (86)
T cd06409 40 ETHLYALSYVDDEGDIVLITSDSDLVAAVLV 70 (86)
T ss_pred cCCcccEEEEcCCCCEEEEeccchHHHHHHH
Confidence 3568899999999999999999988888766
No 27
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=34.72 E-value=51 Score=23.16 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=28.3
Q ss_pred eCeeCCCCcCCCccc------cccCCeeEEEEECCCCCeEEEEEec
Q psy14392 76 TALEGCASLKSLQAK------VPRYRKVQLTGLDETGKPDSWTAEG 115 (164)
Q Consensus 76 ~~~EgCLS~pg~~~~------V~R~~~I~v~y~d~~G~~~~~~~~g 115 (164)
...+.++|+..+... ..+....+++|.|++|.++++.-+-
T Consensus 14 t~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~ 59 (83)
T cd06404 14 TSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQM 59 (83)
T ss_pred EEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHH
Confidence 444556666654333 3566789999999999999987554
No 28
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=32.05 E-value=28 Score=28.52 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=35.0
Q ss_pred eCCCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCcc
Q psy14392 79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPK 140 (164)
Q Consensus 79 EgCLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~ 140 (164)
=|+.-||.-.+ ..+..|.| | +.... -....+.++.|||-|.-|.=-.|..++.
T Consensus 104 ggsAGFP~s~G--~P~~~I~I-~-~~~~~-----~~~~~~hvi~HEiGH~IGfRHTD~~~R~ 156 (211)
T PF12388_consen 104 GGSAGFPTSNG--NPYKFIQI-Y-GLSNY-----SVNVIEHVITHEIGHCIGFRHTDYFNRS 156 (211)
T ss_pred ceeccCCCCCC--CCCceEEE-E-ecCCC-----chhHHHHHHHHHhhhhccccccCcCCcc
Confidence 34555663333 35777888 2 32211 1245788999999999999999987765
No 29
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=30.96 E-value=76 Score=24.89 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=21.7
Q ss_pred CCeeEEEEECCC-CCeEEE--EEechhhhhHhhh
Q psy14392 94 YRKVQLTGLDET-GKPDSW--TAEGWAARIIQHE 124 (164)
Q Consensus 94 ~~~I~v~y~d~~-G~~~~~--~~~g~~Ar~~QHE 124 (164)
-..|+.+|.|.. +...++ +...|.+|.+||=
T Consensus 129 ~~~V~f~y~d~~~~~~~~~~l~~~efi~r~l~Hv 162 (183)
T PF04986_consen 129 DGTVTFRYKDHRTKKTKTLTLSAEEFIRRLLQHV 162 (183)
T ss_pred cceeEEEEEcCCCCcEEEEEechHHHHHHHHhhc
Confidence 456788888874 444444 4555999999993
No 30
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=30.05 E-value=41 Score=22.21 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=24.4
Q ss_pred CCeeEEEEECCCCCeEEEEEechhhhhHhh
Q psy14392 94 YRKVQLTGLDETGKPDSWTAEGWAARIIQH 123 (164)
Q Consensus 94 ~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QH 123 (164)
...+.+.|.|.+|..+.+.-+.-+..+++.
T Consensus 39 ~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~ 68 (84)
T PF00564_consen 39 DEDFQLKYKDEDGDLVTISSDEDLQEAIEQ 68 (84)
T ss_dssp TSSEEEEEEETTSSEEEESSHHHHHHHHHH
T ss_pred CccEEEEeeCCCCCEEEeCCHHHHHHHHHH
Confidence 478999999999999998877766666554
No 31
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=29.57 E-value=62 Score=25.46 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=27.2
Q ss_pred eCCCCcCCCccccccCCeeEEE--EECCCCCeEEEEEechhhhhHhhhhhhhCCeeee
Q psy14392 79 EGCASLKSLQAKVPRYRKVQLT--GLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFT 134 (164)
Q Consensus 79 EgCLS~pg~~~~V~R~~~I~v~--y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~ 134 (164)
.||-|.-|..+...+....++. ...... .....-.+++||+-|.-|..--
T Consensus 58 ~Gc~S~vG~~~~~~~~~~~t~~l~~~~~~~------~~~~~~~~i~HElgHaLG~~HE 109 (198)
T cd04327 58 DGYWSYVGTDALLIGADAPTMNLGWFTDDT------PDPEFSRVVLHEFGHALGFIHE 109 (198)
T ss_pred CCCCCCcCCcccccCCCCceeeeeeecCCC------chhhHHHHHHHHHHHHhcCccc
Confidence 5898887754432233333332 111110 0112336999999999998653
No 32
>PF10135 Rod-binding: Rod binding protein; InterPro: IPR019301 The N-terminal domain of the FlgJ protein is directly involved in flagellar rod assembly, while the adjacent C-terminal domain is a flagellum-specific muramidase (peptidoglycan hydrolase) required for formation of the outer membrane L ring [].
Probab=28.31 E-value=35 Score=20.91 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=12.9
Q ss_pred HHHHHHHHHhCCCeeEec
Q psy14392 5 ILQMKNVMKRFDLFGLSA 22 (164)
Q Consensus 5 i~~m~~tm~~~~gvGLAA 22 (164)
.+.+-+.|...+|+|||.
T Consensus 27 d~~la~~~a~~gg~GLa~ 44 (49)
T PF10135_consen 27 DQQLAKEMAKSGGIGLAD 44 (49)
T ss_pred HHHHHHHHHHcCCCcHHH
Confidence 345556777788999985
No 33
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=28.12 E-value=65 Score=21.65 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=22.6
Q ss_pred eeEEEEECCCCCeEEEEEechhhhhHhh
Q psy14392 96 KVQLTGLDETGKPDSWTAEGWAARIIQH 123 (164)
Q Consensus 96 ~I~v~y~d~~G~~~~~~~~g~~Ar~~QH 123 (164)
..+|+..|.+|+.+++.++.-.-++++.
T Consensus 55 ~yev~~~~~dG~~~ev~vD~~tG~V~~~ 82 (83)
T PF13670_consen 55 CYEVEARDKDGKKVEVYVDPATGEVVKE 82 (83)
T ss_pred EEEEEEEECCCCEEEEEEcCCCCeEeec
Confidence 3677789999999999998877666554
No 34
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=24.39 E-value=40 Score=23.88 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=12.8
Q ss_pred hhhhhHhhhhhhhCCe
Q psy14392 116 WAARIIQHEMDHLDGL 131 (164)
Q Consensus 116 ~~Ar~~QHEiDHL~G~ 131 (164)
....++.||+-|.-|.
T Consensus 106 ~~~~~~~HEiGH~lGl 121 (124)
T PF13582_consen 106 SGVDTFAHEIGHNLGL 121 (124)
T ss_dssp TSTTHHHHHHHHHTT-
T ss_pred ccceEeeehhhHhcCC
Confidence 3459999999999884
No 35
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=24.19 E-value=38 Score=25.24 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=14.0
Q ss_pred CCCeeEecccCCccceEEEEEcCCC
Q psy14392 15 FDLFGLSAPQVGLPLRLFIVAFPDP 39 (164)
Q Consensus 15 ~~gvGLAApQIG~~~ri~vv~~~~~ 39 (164)
.-++-|+.||||+ |++.+.
T Consensus 75 tF~IDl~~PqIGV------V~vtda 93 (120)
T cd03074 75 TFGIDLFRPQIGV------VNVTDA 93 (120)
T ss_pred hcCcccCCCceee------Eecccc
Confidence 4588899999994 566553
No 36
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=22.76 E-value=50 Score=25.45 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=15.5
Q ss_pred echhhhhHhhhhhhhCCeee
Q psy14392 114 EGWAARIIQHEMDHLDGLLF 133 (164)
Q Consensus 114 ~g~~Ar~~QHEiDHL~G~l~ 133 (164)
..+.+.++.||+-|.-|-.-
T Consensus 139 ~~~~~~~~AHEiGH~lGa~H 158 (196)
T PF13688_consen 139 TYNGAITFAHEIGHNLGAPH 158 (196)
T ss_dssp HHHHHHHHHHHHHHHTT---
T ss_pred CCceehhhHHhHHHhcCCCC
Confidence 46888999999999999775
No 37
>PF06486 DUF1093: Protein of unknown function (DUF1093); InterPro: IPR006542 These are a family of small (about 115 amino acids) uncharacterised proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.; PDB: 3NPP_B 2K5Q_A 2K5W_A.
Probab=22.64 E-value=1e+02 Score=20.58 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=15.5
Q ss_pred eeEEEEECCCCCeEEEEEech
Q psy14392 96 KVQLTGLDETGKPDSWTAEGW 116 (164)
Q Consensus 96 ~I~v~y~d~~G~~~~~~~~g~ 116 (164)
.=++.++|.+|+.+++++...
T Consensus 29 ~Y~l~~yd~~G~~k~l~f~~~ 49 (78)
T PF06486_consen 29 EYTLKGYDEDGKEKTLTFTAS 49 (78)
T ss_dssp EEEEEEEETT--EEEEEEEES
T ss_pred EEEEEEECCCCCEEEEEEEec
Confidence 346778999999999998875
No 38
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=22.13 E-value=91 Score=21.88 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=17.8
Q ss_pred eeEEEEECCCCCeEEEEEech
Q psy14392 96 KVQLTGLDETGKPDSWTAEGW 116 (164)
Q Consensus 96 ~I~v~y~d~~G~~~~~~~~g~ 116 (164)
.+.|+|.|++|..+++.-+.-
T Consensus 39 ~~~vtYiDeD~D~ITlssd~e 59 (82)
T cd06397 39 KVGVTYIDNDNDEITLSSNKE 59 (82)
T ss_pred HeEEEEEcCCCCEEEecchHH
Confidence 488999999999999876653
No 39
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=21.86 E-value=37 Score=27.64 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=10.4
Q ss_pred hhhhHhhhhhhhC
Q psy14392 117 AARIIQHEMDHLD 129 (164)
Q Consensus 117 ~Ar~~QHEiDHL~ 129 (164)
.=-+.+||+|||+
T Consensus 76 l~em~d~E~~HL~ 88 (204)
T COG2941 76 LKEMADEEIDHLA 88 (204)
T ss_pred HHHHHHHHHHHHH
Confidence 3457899999997
No 40
>COG2916 Hns DNA-binding protein H-NS [General function prediction only]
Probab=21.65 E-value=39 Score=25.61 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=29.9
Q ss_pred CCeeEEEEECCCCCeEEEEEechhhhhHhhhhhh
Q psy14392 94 YRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDH 127 (164)
Q Consensus 94 ~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDH 127 (164)
|..+.+.|+|.+|+..+++..|=.-+.++-.+|-
T Consensus 85 ~rpa~~~~~~~n~eg~TWTGrGR~P~wI~kAl~~ 118 (128)
T COG2916 85 ARPAKYKYYDENGEGKTWTGRGRTPAWIGKALDE 118 (128)
T ss_pred CCCCCCCeecCCCCCCcccCCCCCcHHHHHHHHc
Confidence 4567788999999999999999998999988886
No 41
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=21.40 E-value=76 Score=28.89 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=36.1
Q ss_pred CCeEEEEEechhhhhHhhhhhhh----------------CCeeeeeccCccccc-----------cchhhhhhhhcCc
Q psy14392 106 GKPDSWTAEGWAARIIQHEMDHL----------------DGLLFTDSMLPKSLE-----------CVCWQDINLQNGL 156 (164)
Q Consensus 106 G~~~~~~~~g~~Ar~~QHEiDHL----------------~G~l~~Dr~~~~~~~-----------~~~~~~~~~~~g~ 156 (164)
.+.++++...-...+.|+|.|.| +|++|+|-+++-..+ -+...+.++.+|-
T Consensus 211 ~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~ 288 (443)
T PRK05201 211 KKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGS 288 (443)
T ss_pred CceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccc
Confidence 34677778888888999999864 799999988763322 2555566666664
No 42
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=20.23 E-value=1.6e+02 Score=17.64 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=17.9
Q ss_pred eeEEE-EECCCCCeEEEEEechh
Q psy14392 96 KVQLT-GLDETGKPDSWTAEGWA 117 (164)
Q Consensus 96 ~I~v~-y~d~~G~~~~~~~~g~~ 117 (164)
.++|. |.|.+|+.+..+-.||.
T Consensus 3 ~~~v~g~~~~~Gkrk~~~k~GF~ 25 (46)
T PF14657_consen 3 YYRVYGYDDETGKRKQKTKRGFK 25 (46)
T ss_pred EEEEEEEECCCCCEEEEEcCCCC
Confidence 45674 78889999999999974
No 43
>KOG0022|consensus
Probab=20.02 E-value=21 Score=31.53 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=28.4
Q ss_pred CCCeeEecccCCc---cceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEece
Q psy14392 15 FDLFGLSAPQVGL---PLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPE 65 (164)
Q Consensus 15 ~~gvGLAApQIG~---~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~ 65 (164)
-+|||||+.|--. ..||+.||+.+.+.+ ++ +.....-||||+
T Consensus 201 LG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~------~a---k~fGaTe~iNp~ 245 (375)
T KOG0022|consen 201 LGGVGLAVAMGAKAAGASRIIGVDINPDKFE------KA---KEFGATEFINPK 245 (375)
T ss_pred cchHHHHHHHhHHhcCcccEEEEecCHHHHH------HH---HhcCcceecChh
Confidence 3679999988654 458999998765411 11 123357899998
Done!