Query psy14392
Match_columns 164
No_of_seqs 103 out of 1021
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 18:41:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g5k_A Peptide deformylase, mi 100.0 2.9E-58 1E-62 364.7 9.3 150 1-151 32-182 (183)
2 4dr9_A Peptide deformylase; hy 100.0 2.5E-55 8.4E-60 349.8 11.3 144 1-158 43-186 (192)
3 3u04_A Peptide deformylase 1; 100.0 6.3E-55 2.2E-59 347.4 12.5 152 1-154 30-186 (190)
4 1xeo_A Peptide deformylase; co 100.0 1E-54 3.4E-59 340.3 13.0 138 1-155 27-164 (168)
5 1lme_A PDF, peptide deformylas 100.0 1.3E-54 4.5E-59 341.5 13.3 137 1-156 38-174 (176)
6 3pn3_A Peptide deformylase 1B, 100.0 1.4E-54 4.9E-59 345.4 13.2 139 1-153 25-163 (193)
7 3qu1_A Peptide deformylase 2; 100.0 1.7E-54 5.8E-59 339.8 12.5 138 1-155 30-168 (171)
8 1n5n_A Peptide deformylase; me 100.0 1.7E-54 5.7E-59 342.0 12.2 138 1-154 40-177 (180)
9 3uwb_A RIIA-RIIB membrane-asso 100.0 1.4E-54 4.7E-59 335.3 11.3 127 1-141 27-153 (154)
10 3dld_A Peptide deformylase; ba 100.0 1.5E-54 5.1E-59 340.2 11.3 138 1-147 28-165 (171)
11 1y6h_A Peptide deformylase; op 100.0 2.5E-54 8.6E-59 340.6 12.5 143 1-152 30-172 (177)
12 1zxz_A PDF, peptide deformylas 100.0 6.8E-55 2.3E-59 348.9 8.9 155 1-156 31-186 (197)
13 3e3u_A Peptide deformylase; me 100.0 3.6E-54 1.2E-58 344.7 12.8 152 1-163 33-188 (197)
14 2ew5_A Peptide deformylase; in 100.0 3.2E-54 1.1E-58 340.8 12.2 143 1-155 27-169 (181)
15 1rl4_A Formylmethionine deform 100.0 3.9E-54 1.3E-58 342.1 11.5 143 1-156 33-175 (188)
16 1ws0_A Peptide deformylase 1; 100.0 6.6E-54 2.2E-58 332.1 11.8 125 1-143 28-152 (156)
17 2w3t_A Peptide deformylase; pr 100.0 9.8E-54 3.4E-58 339.5 12.5 135 1-152 27-161 (188)
18 1v3y_A Peptide deformylase; pr 100.0 5.5E-53 1.9E-57 336.7 12.9 141 1-146 26-168 (192)
19 2okl_A Peptide deformylase 2; 100.0 1.7E-51 5.9E-56 326.4 12.7 128 1-142 31-173 (185)
20 2os0_A Peptide deformylase; PD 100.0 3E-51 1E-55 325.7 13.4 132 1-142 30-176 (188)
21 1lm4_A Peptide deformylase PDF 100.0 8.6E-51 2.9E-55 324.4 14.5 129 1-142 41-184 (194)
22 3svj_P Peptide deformylase 3; 100.0 5.9E-51 2E-55 327.4 12.4 136 1-142 42-192 (203)
23 3l87_A Peptide deformylase; hy 100.0 4.4E-50 1.5E-54 328.3 12.7 136 1-142 76-227 (238)
24 2bkf_A Zinc-finger protein NBR 40.8 22 0.00074 24.2 2.9 38 78-115 24-64 (87)
25 1vd2_A Protein kinase C, IOTA 35.5 16 0.00053 24.9 1.5 31 91-121 41-71 (89)
26 2kvz_A ISPE; structural genomi 32.9 37 0.0013 22.8 3.1 43 92-134 4-48 (85)
27 2kkc_A Sequestosome-1; P62, PB 28.3 43 0.0015 23.2 2.9 30 94-123 60-89 (102)
28 3edh_A Bone morphogenetic prot 25.8 67 0.0023 24.5 3.9 55 80-150 64-121 (201)
29 3npp_A PFAM DUF1093 family pro 24.5 73 0.0025 21.1 3.4 21 95-115 28-48 (87)
30 2k5q_A Hypothetical membrane a 24.4 68 0.0023 22.2 3.4 20 96-115 36-55 (105)
31 3lqb_A Hatching enzyme, LOC792 23.9 50 0.0017 25.3 2.8 45 106-150 79-127 (199)
32 3uip_D E3 SUMO-protein ligase 23.6 28 0.00094 22.6 1.0 16 121-136 49-64 (67)
33 1wj6_A KIAA0049 protein, RSGI 21.5 24 0.00081 24.7 0.4 38 78-115 32-72 (101)
34 1oey_J P40-PHOX, neutrophil cy 20.9 44 0.0015 23.5 1.7 78 61-149 12-92 (107)
35 2ktr_A Sequestosome-1; autopha 20.8 68 0.0023 22.8 2.8 31 93-123 74-104 (117)
No 1
>3g5k_A Peptide deformylase, mitochondrial; actinonin, hydrolase, iron, metal-bindi mitochondrion, protein biosynthesis, transit peptide; HET: BB2; 1.70A {Homo sapiens} PDB: 3g5p_A
Probab=100.00 E-value=2.9e-58 Score=364.71 Aligned_cols=150 Identities=40% Similarity=0.746 Sum_probs=130.5
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCC-CCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCee
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPE-ESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALE 79 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~-~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~E 79 (164)
+++|++||++||++++|+||||||||+++|+||++.++.. ..++++....+++.+.++.+||||+|+..|.+ +..++|
T Consensus 32 l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~vid~~~~~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~-~~~~~E 110 (183)
T 3g5k_A 32 LQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSR-LVTFPE 110 (183)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEECHHHHHTSCHHHHHHHTCCCEEEEEEEEEEEEEEEEE-EEEEEE
T ss_pred HHHHHHHHHHHHHHcCCeEEeccccCCceeEEEEEcCccccccccccccccccccccCceEEECCeEEecCCC-EEeccc
Confidence 4789999999999999999999999999999999986431 11111111112223334679999999998887 888999
Q ss_pred CCCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchhhhhh
Q psy14392 80 GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151 (164)
Q Consensus 80 gCLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~~ 151 (164)
||||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+|||++++|.+.+|+.+|
T Consensus 111 GCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~s~~~~~w~~~~ 182 (183)
T 3g5k_A 111 GCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTFTNVYWMKVN 182 (183)
T ss_dssp CCTTSTTEEEEEEEEEEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGTSCGGGCEETTCCCCC
T ss_pred CccCcCCccEEeeCcceeEEEEECCCCCEEEEEEeChhheehhhHHHHhCCEeEEEEeCHHHhCccceeEcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876
No 2
>4dr9_A Peptide deformylase; hydrolase-hydrolase inhibitor complex; HET: BB2; 1.90A {Synechococcus elongatus}
Probab=100.00 E-value=2.5e-55 Score=349.84 Aligned_cols=144 Identities=31% Similarity=0.458 Sum_probs=131.9
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++|++||++||++++|+||||||||+++|+||++.++.. ...++.+||||+|+..|.+ +..++||
T Consensus 43 l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~-------------~~~~~~vlINP~I~~~s~~-~~~~~EG 108 (192)
T 4dr9_A 43 LRQTIRQMLQTMYSADGIGLAAPQVGINKQLIVIDLELED-------------EQAPPLVLINPKIERTAGD-LEQCQEG 108 (192)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEGGGGTCCSSEEEECCCC------------------CCEEEEEEEEEEEEEE-EEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCeEEechhcCCceeEEEEEcCccc-------------cCcccEEEECCEEEECCCC-EeeccCC
Confidence 4789999999999999999999999999999999976532 0123689999999998887 8889999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchhhhhhhhcCcee
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLE 158 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~~~~~g~~~ 158 (164)
|||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.++....++..++..|+.+
T Consensus 109 CLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~~~~~~~~~~~~~~~v~ 186 (192)
T 4dr9_A 109 CLSIPGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARCIQHEMDHLNGVLFVDRVENRLELNEALDKKGFAVQAVR 186 (192)
T ss_dssp CTTSTTCCEEEEEEEEEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGCCCHHHHHHHHHHTTCCGGGCC
T ss_pred CCCcCCeeeEecccceEEEEEECCCCCEEEEEEEChhhhhhhhHhHhhCCEeeEEEeCcHHHHHHHHHHhccccccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999888865
No 3
>3u04_A Peptide deformylase 1; ssgcid, actinonin, ehrlichia chaffeensi structural genomics; HET: BB2; 1.70A {Ehrlichia chaffeensis} SCOP: d.167.1.0 PDB: 3oca_A
Probab=100.00 E-value=6.3e-55 Score=347.39 Aligned_cols=152 Identities=26% Similarity=0.368 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCC-Ccchh----hhhhhcccCCcEEEEeceEEEecCceee
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEES-FSEGD----IKKFEMQAFPHMVWINPEMKILDYKDKV 75 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~-~~~~~----~~~~~~~~~~~~v~INP~I~~~s~e~~~ 75 (164)
+++|++||++||++++|+||||||||+++||||++.++.... .+.+. ..... ...++.+||||+|+..|.+ +.
T Consensus 30 l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~vid~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vlINP~I~~~s~~-~~ 107 (190)
T 3u04_A 30 IRKLVDDMFETMHANQGLGLAAVQVGVHKRILVMNVPEEFEDSEDIENVEDKIEGYE-LYGGPYCIINPKIVDISQE-KV 107 (190)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEECCC-------------CTTCB-SSEEEEEEEEEEEEEECSC-EE
T ss_pred HHHHHHHHHHHHHHcCCeEEehhhcCCceeEEEEEcCcccccccccccccccccccc-ccCCCEEEECCEEEecCCC-Ee
Confidence 478999999999999999999999999999999998653210 00000 00000 0123689999999999988 88
Q ss_pred eCeeCCCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchhhhhhhhc
Q psy14392 76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQN 154 (164)
Q Consensus 76 ~~~EgCLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~~~~~ 154 (164)
.++|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+|||++.+...+..++.++.+
T Consensus 108 ~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~k~~~ 186 (190)
T 3u04_A 108 KLKEGCLSVPGYFDYIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVKKKER 186 (190)
T ss_dssp EEEECCTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHHHHHHC
T ss_pred eccCCCCCcCCcceeeccchheEEEEECCCCCEEEEEEEChhhhhhhhHHHhcCCEeeeeecCHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999888888888777654
No 4
>1xeo_A Peptide deformylase; cobalt deformylase, formate, hydrolase; 1.30A {Escherichia coli} SCOP: d.167.1.1 PDB: 1bs5_A 1bs6_A 1bs7_A 1bs8_A 1bsj_A* 1bsk_A* 1bsz_A* 1g27_A* 1bs4_A* 1icj_A* 1lru_A* 1xem_A 1xen_A 1g2a_A 2ai8_A* 4al3_A 4al2_A 3k6l_A* 1dff_A 1def_A ...
Probab=100.00 E-value=1e-54 Score=340.32 Aligned_cols=138 Identities=33% Similarity=0.435 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++|++||++||++++|+||||||||+++|+||++.++.. .++.+||||+|+..|++ .. .+||
T Consensus 27 l~~li~dM~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~~---------------~~~~vlINP~I~~~s~~-~~-~~EG 89 (168)
T 1xeo_A 27 IQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENR---------------DERLVLINPELLEKSGE-TG-IEEG 89 (168)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCCTTS---------------CCCEEEEEEEEEEEECC-BC-CEEC
T ss_pred HHHHHHHHHHHHHHCCCEEEEhHhCCcceEEEEEEccCCc---------------CccEEEECCEEeccCCC-EE-EecC
Confidence 4789999999999999999999999999999999875432 12579999999999987 66 8999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchhhhhhhhcC
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~~~~~g 155 (164)
|||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+...+..++.++.++
T Consensus 90 CLSvPg~~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~~~~~~~~~~~~~~ 164 (168)
T 1xeo_A 90 CLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRL 164 (168)
T ss_dssp CTTSTTCCEECCBCSEEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred ccCcCCEEEEeEcccEEEEEEECCCCCEEEEEEeCCeEEeeeehhHHhCCEEEeeeCCHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999997776666565554433
No 5
>1lme_A PDF, peptide deformylase; thermophIle, metalloenzyme, deformylation, structural genomics, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.167.1.1
Probab=100.00 E-value=1.3e-54 Score=341.46 Aligned_cols=137 Identities=30% Similarity=0.496 Sum_probs=113.9
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++|++||++||++++|+||||||||+++|+||++.++. +.+||||+|+..|++ ....+||
T Consensus 38 l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~vid~~~~------------------~~vlINP~I~~~s~~-~~~~~EG 98 (176)
T 1lme_A 38 LKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGNG------------------PVAVINPEILEIDPE-TEVAEEG 98 (176)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECSSSC------------------CEEEEEEEEEEECSC-EEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCeEEEehhcCcceEEEEEEcCCc------------------eEEEECCEEEccCCc-EEeccCC
Confidence 478999999999999999999999999999999987431 379999999999988 7788999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchhhhhhhhcCc
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGL 156 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~~~~~g~ 156 (164)
|||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+...+..++.++.+++
T Consensus 99 CLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~~~~~~~ 174 (176)
T 1lme_A 99 CLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIARTV 174 (176)
T ss_dssp CTTSTTCCEEEEEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGBCC-----------------
T ss_pred ccCcCCcceEEecCCEEEEEEECCCCCEEEEEEeCCeEEEeeehhHhhCCEeeeeeCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999987777766666555443
No 6
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision pathway, N induced-FIT, hydrolase-hydrolase inhibitor complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB: 3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A 3pn6_A 3m6r_A 3cpm_A
Probab=100.00 E-value=1.4e-54 Score=345.44 Aligned_cols=139 Identities=35% Similarity=0.462 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++|++||++||++++|+||||||||+++|+||++.++... ...+.+||||+|+..|.+ ....+||
T Consensus 25 l~~Li~dM~eTM~~a~GvGLAApQIGv~~Ri~Vid~~~~~~-------------~~~~~vlINP~I~~~s~~-~~~~~EG 90 (193)
T 3pn3_A 25 LKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPG-------------EGKEIVLVNPKIKKYSDK-LVPFDEG 90 (193)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECTTCSTT-------------SSCCEEEEEEEEEEECSC-EEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCeEEEccccCcceEEEEEECCCCcC-------------CcccEEEECCEEEecCCc-EEEeecc
Confidence 47899999999999999999999999999999998754320 113579999999999988 8889999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchhhhhhhh
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQ 153 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~~~~ 153 (164)
|||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+|||++.++..+..++.++.
T Consensus 91 CLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~kr~~~~~k~~k~~ 163 (193)
T 3pn3_A 91 CLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALE 163 (193)
T ss_dssp CTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGSCHHHHHTTHHHHHHHH
T ss_pred cccCCCCCCcCcCCCEEEEEEEcCCCCEEEEEEEChhhhhhhHHHHHhCCEeeeeecCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999888888887764
No 7
>3qu1_A Peptide deformylase 2; structural genomics, center for structural genomics of infec diseases, csgid, metal binding; 1.80A {Vibrio cholerae} SCOP: d.167.1.0
Probab=100.00 E-value=1.7e-54 Score=339.75 Aligned_cols=138 Identities=29% Similarity=0.430 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHh-CCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCee
Q psy14392 1 MKIIILQMKNVMKR-FDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALE 79 (164)
Q Consensus 1 ~~~li~~m~~tm~~-~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~E 79 (164)
+++|++||++||++ ++|+||||||||+++|+||++.++.. .++.+||||+|+. |++ ....+|
T Consensus 30 l~~li~dM~eTm~~~~~GvGLAApQIGv~~ri~vid~~~~~---------------~~~~vlINP~I~~-~~~-~~~~~E 92 (171)
T 3qu1_A 30 VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNR---------------DQPLVLINPKVVS-GSN-KEMGQE 92 (171)
T ss_dssp GHHHHHHHHHHHHHSSSCCEEEGGGGTCCBCEEEECCCSSS---------------CCCEEEEEEEEEE-EEE-EEEEEE
T ss_pred HHHHHHHHHHHHHhcCCcEEEEccccCcceEEEEEEccCCC---------------CccEEEECCEEEe-CCC-eEEccc
Confidence 57999999999999 99999999999999999999876431 1357999999996 666 888999
Q ss_pred CCCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchhhhhhhhcC
Q psy14392 80 GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155 (164)
Q Consensus 80 gCLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~~~~~g 155 (164)
||||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+...+..++.++.+.
T Consensus 93 GCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~k~~~~ 168 (171)
T 3qu1_A 93 GCLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKN 168 (171)
T ss_dssp CCTTSTTCCEEEEEEEEEEEEEECTTSCEEEEEECSTHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHHHHHHHC
T ss_pred CccCcCCccccccCchhhEEEEECCCCCEEEEEEECHHHHHHhHHHHhhCCEehhhhCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999998888887777766543
No 8
>1n5n_A Peptide deformylase; metalloenzyme, drug design, deformylation, hydrolase; 1.80A {Pseudomonas aeruginosa} SCOP: d.167.1.1 PDB: 1s17_A* 1ix1_A* 1lry_A*
Probab=100.00 E-value=1.7e-54 Score=342.02 Aligned_cols=138 Identities=30% Similarity=0.398 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++|++||++||++++|+||||||||+++|+||++.++.. .++.+||||+|+..|++ +...+||
T Consensus 40 l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~---------------~~~~vlINP~I~~~s~~-~~~~~EG 103 (180)
T 1n5n_A 40 VRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDK---------------SEPRVFINPEFEPLTEE-MDQYQEG 103 (180)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEECSTTS---------------CCEEEEEEEEEEESCSC-EEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCeEEEhhhcCcceEEEEEEccCCC---------------CccEEEECCEEecCCCC-EEecccC
Confidence 4789999999999999999999999999999999985432 13579999999999988 7788999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchhhhhhhhc
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQN 154 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~~~~~ 154 (164)
|||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+...+..+..++.+
T Consensus 104 CLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~~~~~ 177 (180)
T 1n5n_A 104 CLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHR 177 (180)
T ss_dssp CTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHBTCCGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CcCcCCcceEEeccCEEEEEEECCCCCEEEEEEcCCeEEeeeehhHhhCCEeEeeecCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999777666655555433
No 9
>3uwb_A RIIA-RIIB membrane-associated protein; actinonin, probable peptide deformylase hydrolase-antibiotic complex; HET: BB2; 1.70A {Synechococcus phage s-ssm7} PDB: 3uwa_A*
Probab=100.00 E-value=1.4e-54 Score=335.32 Aligned_cols=127 Identities=35% Similarity=0.506 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++|++||++||++++|+||||||||+++|+||++.++... . .++.+||||+|+..|.+ ....+||
T Consensus 27 l~~li~dM~~Tm~~~~GvGLAApQIGv~~ri~vi~~~~~~~------------~-~~~~v~INP~I~~~s~~-~~~~~EG 92 (154)
T 3uwb_A 27 MSELYDQMCEAMWASDGIGLAAPQVGINKRVIVVDETTEEH------------G-KYAHLMVNPKITWKSEE-KVLFDEG 92 (154)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEECCBTTT------------B-SCEEEEEEEEEEEECSC-EEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCcEEEccccCccEEEEEEEcccccc------------C-cccEEEECCEEEECCCc-EEecccC
Confidence 47899999999999999999999999999999999864220 0 14689999999999988 8889999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccc
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKS 141 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~ 141 (164)
|||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||++++.
T Consensus 93 CLSvPg~~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~e 153 (154)
T 3uwb_A 93 CLSVPDQNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLEGILFVDYFNDKE 153 (154)
T ss_dssp ETTEEEEEEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGCC---
T ss_pred ccCcCCcceeccCcceeEEEEECCCCCEEEEEEEChhhhhhhhHHHhhCCEeeeEEeCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999764
No 10
>3dld_A Peptide deformylase; bacterial blight, XOO1075, xanthomonas oryzae PV. oryzae KACC10331, hydrolase; 2.60A {Xanthomonas oryzae PV} SCOP: d.167.1.0
Probab=100.00 E-value=1.5e-54 Score=340.19 Aligned_cols=138 Identities=30% Similarity=0.499 Sum_probs=121.3
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++|++||++||++++|+||||||||+++|+||++.+... .+++ ....++.+||||+|+..|.+ +...+||
T Consensus 28 l~~li~dM~eTm~~~~GvGLAApQIGv~~ri~vid~~~~~-~~~~-------~~~~~~~vlINP~I~~~s~~-~~~~~EG 98 (171)
T 3dld_A 28 LHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVFGFEASE-RYPE-------APAVPLTALANAQIEPLSDE-MENGWEG 98 (171)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEGGGGTCCSSEEEEEESSCS-SSCS-------CCCEEEEEEEEEEEEESSSC-EEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEccccCCceeEEEEEccccc-cccc-------ccccCCEEEECCEEEEcCCc-eeecCCC
Confidence 4789999999999999999999999999999999986532 1111 01124689999999998888 8889999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchh
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCW 147 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~ 147 (164)
|||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+...+.+
T Consensus 99 CLSvPg~~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~kr~~~~~ 165 (171)
T 3dld_A 99 CLSIPGLRAVIPRYRYIRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFDD 165 (171)
T ss_dssp ETTEEEEEEEEEEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCSCGGGCEETT
T ss_pred ccccCCceEeeeCChhcEEEEECCCCCEEEEEEeChhhhhhhhHhHhcCCEeehhcCCHHHhhhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999876654433
No 11
>1y6h_A Peptide deformylase; open and close conformation, PDF, hydrolase; 2.20A {Leptospira interrogans} SCOP: d.167.1.1 PDB: 1sv2_A* 1vey_A* 1vev_A 1vez_A 1szz_A*
Probab=100.00 E-value=2.5e-54 Score=340.57 Aligned_cols=143 Identities=27% Similarity=0.423 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++|++||++||++++|+||||||||+++|+|||+.++.. .++ +....++.+||||+|+..|.+ +...+||
T Consensus 30 l~~li~dM~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~~-~~~-------~~~~~~~~vlINP~I~~~s~~-~~~~~EG 100 (177)
T 1y6h_A 30 FKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNE-RYP-------GTPDVPERIILNPVITPLTKD-TSGFWEG 100 (177)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCSSCT-TST-------TSCCCCCEEEEEEEEEECCSC-EEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEehhcCCceeEEEEEccCcc-ccc-------cccccCcEEEECCEEEEcCCC-EEecccC
Confidence 4789999999999999999999999999999999985421 111 011234689999999999987 7788999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchhhhhhh
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINL 152 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~~~ 152 (164)
|||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+...+..+..++
T Consensus 101 CLSvPg~~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~~~~~~~~~~~ 172 (177)
T 1y6h_A 101 CLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLDSS 172 (177)
T ss_dssp ETTEEEEEEEEEEESEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGBSCTTSEEEHHHHHHH
T ss_pred CcccCCeeeeeeccceEEEEEECCCCCEEEEEEeCceeEehhhhHHHhCCEeeeeecChhhhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999987776665555554
No 12
>1zxz_A PDF, peptide deformylase, mitochondrial; PDF1A, eukaryote, higher plant, zinc ION, hydrolase; 2.80A {Arabidopsis thaliana} PDB: 1zy0_A 1zy1_A
Probab=100.00 E-value=6.8e-55 Score=348.91 Aligned_cols=155 Identities=39% Similarity=0.597 Sum_probs=130.3
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCC-CCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCee
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPE-ESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALE 79 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~-~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~E 79 (164)
+++|++||++||++++|+||||||||+++|||||+..... ...+++.....+..+.++.+||||+|+..|++ +...+|
T Consensus 31 l~~Li~dM~eTM~~~~GVGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~-~~~~~E 109 (197)
T 1zxz_A 31 IQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNK-KALFFE 109 (197)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEECHHHHHSSCHHHHHHTTCCCEEEEEEEEEEEEESSSC-EEEEEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEccccCcceEEEEEEcCcccccccccccccccccCCCCceEEECCEEEecCCC-EEeeee
Confidence 4689999999999999999999999999999999864210 00011111111122223589999999998887 888899
Q ss_pred CCCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchhhhhhhhcCc
Q psy14392 80 GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGL 156 (164)
Q Consensus 80 gCLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~~~~~g~ 156 (164)
||||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+|||++.++..+.+...++..+.
T Consensus 110 GCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~~~~~~~~~~~~~~~ 186 (197)
T 1zxz_A 110 GCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFRTVDNLDLPLAEGC 186 (197)
T ss_dssp EETTEEEEEEEEEEESEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGGGTBCTTCCEEGGGTTSCCCTTC
T ss_pred CCcccCCeeeeEecccEEEEEEECCCCCEEEEEEeChhhhHHHHHHHHhCCEeeeeecCHHHHHHHHHHhhccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887776554
No 13
>3e3u_A Peptide deformylase; metallo-enzyme, hydrolase, iron, metal-binding, protein biosynthesis; HET: NVC; 1.56A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.6e-54 Score=344.68 Aligned_cols=152 Identities=30% Similarity=0.402 Sum_probs=132.2
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCce----eee
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKD----KVT 76 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~----~~~ 76 (164)
+++|++||++||++++|+||||||||+++|||||+.++... ....++.+||||+|+..+.+. +..
T Consensus 33 l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~-----------~~~~~~~vlINP~I~~~~~~~~~~e~~~ 101 (197)
T 3e3u_A 33 LAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRA-----------MTARRRGVVINPVLETSEIPETMPDPDT 101 (197)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEECCTTBC-----------TTSCSEEEEEEEEEEESCCCCSCCCTTT
T ss_pred HHHHHHHHHHHHHHCCCeEEEccccCcceEEEEEEcCcccc-----------cccccceEEEcCEEEccCcceecccccc
Confidence 47899999999999999999999999999999999865310 011246899999999633320 237
Q ss_pred CeeCCCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchhhhhhhhcCc
Q psy14392 77 ALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGL 156 (164)
Q Consensus 77 ~~EgCLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~~~~~g~ 156 (164)
.+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+|||++.+++.+..++.+..-|.
T Consensus 102 ~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~k~~~~~ 181 (197)
T 3e3u_A 102 DDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGV 181 (197)
T ss_dssp CEEECTTSTTCEEECCCCSEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCCHHHHHHHHHHHHHHTCSS
T ss_pred ccCCCCCcCCCceeccCCCeEEEEEECCCCCEEEEEEEChhhhhhhhhhHhhCCEeeheecCHHHHHHHHHHHHhcccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999998988888887777
Q ss_pred eeeeccc
Q psy14392 157 LELRYYM 163 (164)
Q Consensus 157 ~~~~~~~ 163 (164)
...+|-|
T Consensus 182 ~~~~~~~ 188 (197)
T 3e3u_A 182 PGLSWLP 188 (197)
T ss_dssp TTCEECB
T ss_pred CCccccC
Confidence 7777654
No 14
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A {Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Probab=100.00 E-value=3.2e-54 Score=340.82 Aligned_cols=143 Identities=28% Similarity=0.368 Sum_probs=122.9
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++|++||++||++++|+||||||||+++|+|||+.++.. ++. ...++.+||||+|+ .|++ +...+||
T Consensus 27 l~~Li~dM~eTm~~~~GvGLAApQIGv~~Ri~Vid~~~~~---~~~-------~~~~~~vlINP~I~-~s~~-~~~~~EG 94 (181)
T 2ew5_A 27 LHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQED---GVQ-------HKEDCLEIINPKFI-ETGG-SMMYKEG 94 (181)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCCCTT---SCC-------CGGGCEEEEEEEEE-EEEC-CEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCeEEEhhhcCcceEEEEEECCCcc---ccc-------ccCccEEEECCEEE-EcCC-EEEcccC
Confidence 4789999999999999999999999999999999986531 000 01123799999999 8877 7788999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchhhhhhhhcC
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~~~~~g 155 (164)
|||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+...+..++.++.++
T Consensus 95 CLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~~~~~~ 169 (181)
T 2ew5_A 95 CLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKK 169 (181)
T ss_dssp CTTSTTCCEEEEECSEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCCHHHHHHHHHHHHHC---
T ss_pred CcccCCCcceeccccEEEEEEECCCCCEEEEEEeCceEEeeeehhHHhCCEeEeeeCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999997777666666555443
No 15
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design, malaria, PDF, peptide DEFO plasmodium, hydrolase; HET: BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1 PDB: 1rqc_A 1jym_A
Probab=100.00 E-value=3.9e-54 Score=342.08 Aligned_cols=143 Identities=29% Similarity=0.377 Sum_probs=122.3
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++|++||++||++++|+||||||||+++|+|||+.+..... ..++.+||||+|+..|++ ....+||
T Consensus 33 l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~------------~~~~~vlINP~I~~~s~~-~~~~~EG 99 (188)
T 1rl4_A 33 LKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRK------------EENERIFINPSIVEQSLV-KLKLIEG 99 (188)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEC-----------------------CEEEEEEEEEECSC-EEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCeEEEhhhcCcceEEEEEEccccccC------------cccceEEECCEEEecCCc-EEecccc
Confidence 478999999999999999999999999999999987531100 012479999999999988 7778999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchhhhhhhhcCc
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGL 156 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~~~~~g~ 156 (164)
|||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+...+..++.++.+++
T Consensus 100 CLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~~~~~~~ 175 (188)
T 1rl4_A 100 CLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIRDY 175 (188)
T ss_dssp CTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGBCHHHHHHHHHHHHHHHHC-
T ss_pred ccccCCccEEEecccEEEEEEECCCCCEEEEEEeCCeEEEeEehhHhhCCEEEEeecCHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999987777766666655443
No 16
>1ws0_A Peptide deformylase 1; alpha + beta topology, hydrolase; 1.70A {Bacillus cereus} PDB: 1ws1_A*
Probab=100.00 E-value=6.6e-54 Score=332.15 Aligned_cols=125 Identities=34% Similarity=0.477 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++|++||++||++++|+||||||||+++|+||++.++.. ...+||||+|+..|++ . ..+||
T Consensus 28 l~~li~dM~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~~----------------~~~vlINP~I~~~s~~-~-~~~EG 89 (156)
T 1ws0_A 28 LVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDVDDDT----------------GKIELINPSILEKRGE-Q-VGPEG 89 (156)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEECCTTT----------------CEEEEEEEEEEEEEEE-E-EEEEC
T ss_pred HHHHHHHHHHHHHHCCCEEEEhHHcCcceeEEEEEccCCc----------------CcEEEECCEEEccCCC-E-EeccC
Confidence 4789999999999999999999999999999999985531 1279999999998876 6 68999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccc
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLE 143 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~ 143 (164)
|||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+.+
T Consensus 90 CLSvPg~~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~ 152 (156)
T 1ws0_A 90 CLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGFLARAIQHEIDHLHGVLFTSKVTRYYEE 152 (156)
T ss_dssp CTTSTTCCEEEEEEEEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGTEEEECC-
T ss_pred CcccCCeeeEeecccEEEEEEECCCCCEEEEEEeCceEEEeEehhHhhCCEeeeeEcCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999886543
No 17
>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase, metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A
Probab=100.00 E-value=9.8e-54 Score=339.53 Aligned_cols=135 Identities=34% Similarity=0.452 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCeeC
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALEG 80 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~Eg 80 (164)
+++|++||++||++++|+||||||||+++|+|||+.++.. .++.+||||+|+..|++ .. .+||
T Consensus 27 l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~---------------~~~~vlINP~I~~~s~~-~~-~~EG 89 (188)
T 2w3t_A 27 IQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENR---------------DERLVLINPELLEKSGE-TG-IEEG 89 (188)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCCTTS---------------CCCEEEEEEEEEEEESC-EE-EEEC
T ss_pred HHHHHHHHHHHHHhCCCEEEEhHHcCcceEEEEEEccCCc---------------CceEEEECCEEEecCCC-EE-eecC
Confidence 4789999999999999999999999999999999875432 12579999999999987 76 8999
Q ss_pred CCCcCCCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccchhhhhhh
Q psy14392 81 CASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVCWQDINL 152 (164)
Q Consensus 81 CLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~~~ 152 (164)
|||+||+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+...+..++.++
T Consensus 90 CLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~~~ 161 (188)
T 2w3t_A 90 CLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKL 161 (188)
T ss_dssp CTTSTTCCEEEEECSEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHHHHH
T ss_pred ccCcCCEEEEEEcccEEEEEEECCCCCEEEEEEECCeEEeeeehHHHhCCEeEeeecCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987766665555444
No 18
>1v3y_A Peptide deformylase; protein synthesis, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP: d.167.1.1
Probab=100.00 E-value=5.5e-53 Score=336.67 Aligned_cols=141 Identities=33% Similarity=0.484 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHHhCCCeeEecccCCccceEEEE-EcCCCCCCCcchhhhhhhcccCCcEEEEeceEEEecCceeeeCee
Q psy14392 1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIV-AFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTALE 79 (164)
Q Consensus 1 ~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vv-~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~~s~e~~~~~~E 79 (164)
+++|++||++||++++|+||||||||+++|+||| +.++.......... .....++.+||||+|+..|.+ .. .+|
T Consensus 26 l~~li~dM~eTM~~~~GvGLAApQIGv~~ri~Vi~d~~~~~~~~~~~~~---~~~~~~~~vlINP~I~~~s~~-~~-~~E 100 (192)
T 1v3y_A 26 IKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVEYADEPEGEEERPL---RELVRRVYVVANPVITYREGL-VE-GTE 100 (192)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEC------------C---TTTCSCEEEEEEEEEEEEECC-EE-EEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEecccCcceEEEEEEccCccccccccccc---cccccCceEEECCEEEEcCCc-EE-EeC
Confidence 4789999999999999999999999999999999 77542210000000 011235689999999998887 66 899
Q ss_pred CCCCcCCCcc-ccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCccccccch
Q psy14392 80 GCASLKSLQA-KVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSLECVC 146 (164)
Q Consensus 80 gCLS~pg~~~-~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~ 146 (164)
||||+||+++ .|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+|||++.+...+.
T Consensus 101 GCLSvPg~~~g~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~ 168 (192)
T 1v3y_A 101 GCLSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFL 168 (192)
T ss_dssp CCTTSTTCCEEEEEECSEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHH
T ss_pred CCCCcCCEecccccccCEEEEEEECCCCCEEEEEEeccEEEEeehhhHhhCCEeEEEecCHhHhHHHH
Confidence 9999999999 999999999999999999999999999999999999999999999999987655443
No 19
>2okl_A Peptide deformylase 2; hydrolase; HET: BB2 CIT; 1.70A {Bacillus cereus} PDB: 1lqy_A*
Probab=100.00 E-value=1.7e-51 Score=326.40 Aligned_cols=128 Identities=24% Similarity=0.441 Sum_probs=113.9
Q ss_pred CHHHHHHHHHHHHh------------CCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEE
Q psy14392 1 MKIIILQMKNVMKR------------FDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKI 68 (164)
Q Consensus 1 ~~~li~~m~~tm~~------------~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~ 68 (164)
+++|++||++||++ ++|+||||||||+++|+||++.++... ...+.+||||+|+.
T Consensus 31 l~~li~dM~eTm~~~~~~~~~~~y~~~~GvGLAApQIGv~~ri~vid~~~~~~-------------~~~~~vlINP~I~~ 97 (185)
T 2okl_A 31 DTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKKMIAVHVTDADG-------------TLYSHALFNPKIIS 97 (185)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHTTCCCCSEEEGGGGTCCBSEEEEEEECTTC-------------CEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhhhcchhccccCCCeEEEEhhhcCcCeeEEEEEccCccC-------------CccceEEECCEEEc
Confidence 46899999999964 689999999999999999999855321 01257999999999
Q ss_pred ecCceee--eCeeCCCCcCC-CccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCcccc
Q psy14392 69 LDYKDKV--TALEGCASLKS-LQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSL 142 (164)
Q Consensus 69 ~s~e~~~--~~~EgCLS~pg-~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~ 142 (164)
.|.+ +. ..+|||||+|| +++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+.
T Consensus 98 ~s~~-~~~~~~~EGCLSvPg~~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 173 (185)
T 2okl_A 98 HSVE-RTYLQGGEGCLSVDREVPGYVPRYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKENP 173 (185)
T ss_dssp ECSS-EEECTTCCCCTTCCSCCCSCCCEESEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCSSCT
T ss_pred cCCc-CccCCCCccCccccCeeeEEeecccEEEEEEECCCCCEEEEEEeCceEEehhhhHHHhCCEeeeeecCccCC
Confidence 9987 65 56999999997 99999999999999999999999999999999999999999999999999998643
No 20
>2os0_A Peptide deformylase; PDF, hydrolase; 1.30A {Enterococcus faecalis} PDB: 2os1_A* 3g6n_A 3cmd_A
Probab=100.00 E-value=3e-51 Score=325.72 Aligned_cols=132 Identities=24% Similarity=0.393 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHHh------------CCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEE
Q psy14392 1 MKIIILQMKNVMKR------------FDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKI 68 (164)
Q Consensus 1 ~~~li~~m~~tm~~------------~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~ 68 (164)
+++|++||++||++ ++|+||||||||+++|+||++.++... +.. ....+.+||||+|+.
T Consensus 30 l~~li~dM~eTm~~~~~~~~~~~y~~~~GvGLAApQIGv~~ri~vid~~~~~~--~~~-------~~~~~~vlINP~I~~ 100 (188)
T 2os0_A 30 DRQLGEDMLTFLKNSQDPVKAEELQLRGDVGLAAPQLDISKRIIAVHVPSNDP--ENE-------TPSLSTVMYNPKILS 100 (188)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEECC------------------EEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhhhcchhcccccCCcEEEEhhhcCcceeEEEEECCCccc--ccc-------cccccEEEEcCEEEe
Confidence 47899999999964 689999999999999999999865210 000 001257999999999
Q ss_pred ecCceee--eCeeCCCCcCC-CccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCcccc
Q psy14392 69 LDYKDKV--TALEGCASLKS-LQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSL 142 (164)
Q Consensus 69 ~s~e~~~--~~~EgCLS~pg-~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~ 142 (164)
.|.+ .. ..+|||||+|| +++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+.
T Consensus 101 ~s~~-~~~~~~~EGCLSvPg~~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 176 (188)
T 2os0_A 101 HSVQ-DVCLGEGEGCLSVDRDVPGYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKENP 176 (188)
T ss_dssp ECSC-EEEETTCCCCTTCCSCCCSCCCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCSSST
T ss_pred cCCc-EecCCCCcCcceECCCeEEEeecccEEEEEEECCCCCEEEEEEeCceeEhhhhHHHHhCCEeeeEEcCCcCC
Confidence 9987 64 57999999997 99999999999999999999999999999999999999999999999999998643
No 21
>1lm4_A Peptide deformylase PDF1; metalloenzyme, hydrolase; 1.45A {Staphylococcus aureus} SCOP: d.167.1.1 PDB: 1lqw_A 2ai9_A 1lmh_A 1q1y_A*
Probab=100.00 E-value=8.6e-51 Score=324.37 Aligned_cols=129 Identities=25% Similarity=0.437 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHHh------------CCCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEE
Q psy14392 1 MKIIILQMKNVMKR------------FDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKI 68 (164)
Q Consensus 1 ~~~li~~m~~tm~~------------~~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~ 68 (164)
+++|++||++||++ ++|+||||||||+++|+|||+.++..+. ...+.+||||+|+.
T Consensus 41 l~~li~dM~eTM~~~~~~~~~~~y~~~~GVGLAApQIGv~~Ri~vid~~~~~~~------------~~~~~vlINP~Ii~ 108 (194)
T 1lm4_A 41 EKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSG------------KSYDYMLVNPKIVS 108 (194)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHTCCCBSEEEGGGGTCCBSEEEEEECCCSSS------------CCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhhhcchhhhcccCCceEEEecccCcceeEEEEEcCCcccc------------ccccEEEECCEEEe
Confidence 46899999999964 6899999999999999999998653110 01257999999999
Q ss_pred ecCceee--eCeeCCCCcCC-CccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCcccc
Q psy14392 69 LDYKDKV--TALEGCASLKS-LQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSL 142 (164)
Q Consensus 69 ~s~e~~~--~~~EgCLS~pg-~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~ 142 (164)
.|.+ +. ..+|||||+|| +++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+|||++...
T Consensus 109 ~s~e-~~~~~~~EGCLSvPg~~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 184 (194)
T 1lm4_A 109 HSVQ-EAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHP 184 (194)
T ss_dssp ECSS-EEECTTCCCCTTCSSCCCSCCCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCCSSST
T ss_pred cCCc-EecCCCCcCCceECCceeEEeccccEEEEEEECCCCCEEEEEEeCceeEhhhhHHHHhCCEeeeeecCcccC
Confidence 9987 65 57999999997 99999999999999999999999999999999999999999999999999998655
No 22
>3svj_P Peptide deformylase 3; alpha-beta, metal binding protein, HYDR hydrolase inhibitor complex; HET: 4LI; 1.55A {Streptococcus pneumoniae} SCOP: d.167.1.1 PDB: 3str_P* 3sw8_P* 4eox_P* 1lm6_A 2aia_A* 2ai7_A* 2aie_P* 2os3_A*
Probab=100.00 E-value=5.9e-51 Score=327.35 Aligned_cols=136 Identities=24% Similarity=0.377 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHHhC------------CCeeEecccCCccceEEEEEcCCCCCCCcchhhhhhhcccCCcEEEEeceEEE
Q psy14392 1 MKIIILQMKNVMKRF------------DLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKI 68 (164)
Q Consensus 1 ~~~li~~m~~tm~~~------------~gvGLAApQIG~~~ri~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~INP~I~~ 68 (164)
+++|++||++||+++ +|+||||||||+++|+|||+.++....... + +..+.++.+||||+|+.
T Consensus 42 l~~Li~dM~eTM~~~~d~~~~~~~~~~~GVGLAApQIGv~~Ri~Vid~~~~~~~~~~---~--~~~~~~~~vlINP~I~~ 116 (203)
T 3svj_P 42 EIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGET---P--QEAYDLEAIMYNPKIVS 116 (203)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEEECC--------------CEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccchhhhccccCCcEEEeccccCCceeEEEEEcCcccccccc---c--cccCcccEEEECCEEEe
Confidence 478999999999974 699999999999999999998653100000 0 00112358999999999
Q ss_pred ecCceee--eCeeCCCCcC-CCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCcccc
Q psy14392 69 LDYKDKV--TALEGCASLK-SLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSL 142 (164)
Q Consensus 69 ~s~e~~~--~~~EgCLS~p-g~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~ 142 (164)
.|.+ .. ..+|||||+| |+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+|||++...
T Consensus 117 ~s~~-~~~~~~~EGCLSvPg~~~g~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 192 (203)
T 3svj_P 117 HSVQ-DAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDP 192 (203)
T ss_dssp ECSS-EEEETTCCCCTTCCSCCCSCBCEESSEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGBCSSCT
T ss_pred cCCc-eeccccccCccCcCCCcEEEecCcceeEEEEECCCCCEEEEEEEChhhhhhhhHhHhcCCEeeeeEcCCcCc
Confidence 8877 54 5799999999 699999999999999999999999999999999999999999999999999998654
No 23
>3l87_A Peptide deformylase; hydrolase, iron, metal-binding, PR biosynthesis; 2.00A {Streptococcus mutans}
Probab=100.00 E-value=4.4e-50 Score=328.28 Aligned_cols=136 Identities=25% Similarity=0.388 Sum_probs=115.1
Q ss_pred CHHHHHHHHHHHHh------------CCCeeEecccCCccceEEEEEcCCCCC-CCcchhhhhhhcccCCcEEEEeceEE
Q psy14392 1 MKIIILQMKNVMKR------------FDLFGLSAPQVGLPLRLFIVAFPDPEE-SFSEGDIKKFEMQAFPHMVWINPEMK 67 (164)
Q Consensus 1 ~~~li~~m~~tm~~------------~~gvGLAApQIG~~~ri~vv~~~~~~~-~~~~~~~~~~~~~~~~~~v~INP~I~ 67 (164)
+++||+||++||++ ++|+||||||||+++|||||+.++... ...+. +..+.++.+||||+|+
T Consensus 76 l~~Li~DM~eTM~~a~d~~~~~~~~~a~GVGLAAPQIGv~kRi~Vid~~~~~~~~~~~~-----~~~~~~~~vlINP~Ii 150 (238)
T 3l87_A 76 DIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQLDISKRIIAVLIPNPEDKDGNPP-----KEAYALKEVMYNPRII 150 (238)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEEECCCC----CC-----SSSEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccchhhhhcccCCceEEeccccCCceeEEEEEcCcccccccccc-----cccCcccEEEECCEEE
Confidence 47899999999997 479999999999999999999865320 00000 0011235899999999
Q ss_pred EecCceee--eCeeCCCCcC-CCccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeeccCcccc
Q psy14392 68 ILDYKDKV--TALEGCASLK-SLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSMLPKSL 142 (164)
Q Consensus 68 ~~s~e~~~--~~~EgCLS~p-g~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~ 142 (164)
..|.+ .. ..+||||||| ++++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++...
T Consensus 151 ~~s~e-~~~~~~~EGCLSvPg~~~g~V~R~~~I~V~~~D~~G~~~~~~~~G~lAr~iQHEiDHLdGiLfiDrls~~~~ 227 (238)
T 3l87_A 151 AHSVQ-DAALADGEGCLSVDRVVEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRINEKNP 227 (238)
T ss_dssp EECSS-EEEETTCCCCTTCCSCCCSCBCEESCEEEEEECTTCCEEEEEECHHHHHHHHHHHHHHTTCCGGGGBCSSCT
T ss_pred eccCc-eecccccCCCcccCCCccEEecChhheEEEEECCCCCEEEEEEeChhhhHHhHHhHhcCCEeeeeecCCCCC
Confidence 98877 54 5799999999 799999999999999999999999999999999999999999999999999998654
No 24
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=40.84 E-value=22 Score=24.24 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=26.6
Q ss_pred eeCCCCcCCCccccccC---CeeEEEEECCCCCeEEEEEec
Q psy14392 78 LEGCASLKSLQAKVPRY---RKVQLTGLDETGKPDSWTAEG 115 (164)
Q Consensus 78 ~EgCLS~pg~~~~V~R~---~~I~v~y~d~~G~~~~~~~~g 115 (164)
.+.|.++-.+.+.|.+. ..+.|+|+|++|+++.+.-++
T Consensus 24 ~~~~~tweel~~mvk~~f~L~~~~ikY~DEenD~v~i~Sq~ 64 (87)
T 2bkf_A 24 DPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQG 64 (87)
T ss_dssp CGGGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHH
T ss_pred cCCCCCHHHHHHHHHHHcCCCceEEEEEcCCCCEEEEecHH
Confidence 34455555555555332 478999999999999987765
No 25
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=35.45 E-value=16 Score=24.90 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=23.0
Q ss_pred cccCCeeEEEEECCCCCeEEEEEechhhhhH
Q psy14392 91 VPRYRKVQLTGLDETGKPDSWTAEGWAARII 121 (164)
Q Consensus 91 V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~ 121 (164)
..+...++++|.|++|.++++.-+--+--++
T Consensus 41 ~~~~~~f~lky~DEeGD~itisSd~EL~eAl 71 (89)
T 1vd2_A 41 FDNEQLFTMKWIDEEGDPCTVSSQLELEEAF 71 (89)
T ss_dssp CCSSCCEEEEECCSSSCCEECCSHHHHHHHH
T ss_pred CCCCCeEEEEEECCCCCcccccCHHHHHHHH
Confidence 4566789999999999999886655443333
No 26
>2kvz_A ISPE; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Listeria monocytogenes}
Probab=32.91 E-value=37 Score=22.75 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=26.5
Q ss_pred ccCCeeEEEEECCCCCeEE--EEEechhhhhHhhhhhhhCCeeee
Q psy14392 92 PRYRKVQLTGLDETGKPDS--WTAEGWAARIIQHEMDHLDGLLFT 134 (164)
Q Consensus 92 ~R~~~I~v~y~d~~G~~~~--~~~~g~~Ar~~QHEiDHL~G~l~~ 134 (164)
.....|+|.|.|++|+... ..++|..---++=+-.-+.|-.+.
T Consensus 4 ~k~~~VtV~YvDe~Gn~La~~~~ltG~vG~~Y~t~~k~I~GYtl~ 48 (85)
T 2kvz_A 4 GKPNQVTVNYLDENNTSIAPSLYLSGLFNEAYNVPMKKIKGYTLL 48 (85)
T ss_dssp SCCCCEEEEEECSSSCEEEEEEEECCCTTCCCCCCCCCGGGEEEE
T ss_pred ccCCeEEEEEECCCCCCCCCCeEEeeeCCCcceecccccCCcEEe
Confidence 3567899999999999754 356675443333333334444443
No 27
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=28.32 E-value=43 Score=23.21 Aligned_cols=30 Identities=10% Similarity=-0.028 Sum_probs=25.1
Q ss_pred CCeeEEEEECCCCCeEEEEEechhhhhHhh
Q psy14392 94 YRKVQLTGLDETGKPDSWTAEGWAARIIQH 123 (164)
Q Consensus 94 ~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QH 123 (164)
...+.+.|.|++|..+++.-+.-+-..++.
T Consensus 60 ~~~f~l~Y~DedGDlItiSsDeEL~~Al~~ 89 (102)
T 2kkc_A 60 PGGFQAHYRAERGDLVAFSSDEELTMAMSY 89 (102)
T ss_dssp SSCEEEEEECTTCCEEEECSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCEEEecCHHHHHHHHHh
Confidence 467999999999999999888877666664
No 28
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} SCOP: d.92.1.0 PDB: 3edg_A 3edi_A
Probab=25.85 E-value=67 Score=24.53 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=33.2
Q ss_pred CCCCcCCCccccccCCeeEEEEECCCCCeEEEEEe-c-hhhhhHhhhhhhhCCeeeee-ccCccccccchhhhh
Q psy14392 80 GCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAE-G-WAARIIQHEMDHLDGLLFTD-SMLPKSLECVCWQDI 150 (164)
Q Consensus 80 gCLS~pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~-g-~~Ar~~QHEiDHL~G~l~~D-r~~~~~~~~~~~~~~ 150 (164)
||-|.-|..+ |....+.+. | .....++||+=|.-|..--. |-++...-.+.|+.+
T Consensus 64 GC~S~vG~~g----------------~~~q~~sl~~~C~~~g~i~HEl~HalGf~HE~~R~DRD~yV~I~~~ni 121 (201)
T 3edh_A 64 GCCSYVGRRG----------------GGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENI 121 (201)
T ss_dssp CSCCCSSCCC----------------SSEEEEEECGGGCSHHHHHHHHHHHHTBCCGGGSTTGGGTEEECGGGB
T ss_pred CCccccCCcC----------------CceeeeecCCCcCccchhHHHHHHHhcchhhhhhhccCcEEEEehhcc
Confidence 8988888544 122333332 1 34578999999999987643 344444445555543
No 29
>3npp_A PFAM DUF1093 family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.15A {Bacillus subtilis}
Probab=24.48 E-value=73 Score=21.08 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=18.1
Q ss_pred CeeEEEEECCCCCeEEEEEec
Q psy14392 95 RKVQLTGLDETGKPDSWTAEG 115 (164)
Q Consensus 95 ~~I~v~y~d~~G~~~~~~~~g 115 (164)
..=++.++|++|+..++++..
T Consensus 28 y~Y~l~~yde~G~~k~l~f~~ 48 (87)
T 3npp_A 28 TEYTLDGYNASGKKEEVTFFA 48 (87)
T ss_dssp EEEEEEEECTTCCEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEc
Confidence 456888999999999999975
No 30
>2k5q_A Hypothetical membrane associated protein BCR97A; NESG, Q812L6 protein, GFT structural genomics, PSI-2, protein structure initiative; NMR {Bacillus cereus atcc 14579} SCOP: b.40.13.1
Probab=24.44 E-value=68 Score=22.15 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=17.7
Q ss_pred eeEEEEECCCCCeEEEEEec
Q psy14392 96 KVQLTGLDETGKPDSWTAEG 115 (164)
Q Consensus 96 ~I~v~y~d~~G~~~~~~~~g 115 (164)
.=++.++|++|++.++++++
T Consensus 36 ~Y~l~~yde~Gkek~l~f~~ 55 (105)
T 2k5q_A 36 EYKLTGFDKDGKEKELEFTA 55 (105)
T ss_dssp EEEEEEECSSCCEEEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEec
Confidence 46788999999999999977
No 31
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}
Probab=23.94 E-value=50 Score=25.33 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=28.4
Q ss_pred CCeEEEEEec---hhhhhHhhhhhhhCCeeeee-ccCccccccchhhhh
Q psy14392 106 GKPDSWTAEG---WAARIIQHEMDHLDGLLFTD-SMLPKSLECVCWQDI 150 (164)
Q Consensus 106 G~~~~~~~~g---~~Ar~~QHEiDHL~G~l~~D-r~~~~~~~~~~~~~~ 150 (164)
|..+.+.+.. +....++||+=|.-|..--. |-++...-.+.|+.+
T Consensus 79 gg~q~~sl~~~~C~~~g~i~HEl~HaLGf~HEh~R~DRD~yV~I~~~nI 127 (199)
T 3lqb_A 79 GGKQVVSLNRKGCVYSGIAQHELNHALGFYHEQSRSDRDQYVRINWNNI 127 (199)
T ss_dssp SSEEEEEECTTTCCSHHHHHHHHHHHHTCCCGGGSTTGGGTEEECGGGB
T ss_pred CCcceEEecCCCCCccchHHHHHHHHhccceeeeccCcCceEEeehhhc
Confidence 3455566543 55789999999999987533 344444445555543
No 32
>3uip_D E3 SUMO-protein ligase ranbp2; UBC9, nuclear pore complex, ligase isomerase-protein binding complex; HET: CME; 2.29A {Homo sapiens} PDB: 3uio_D* 3uin_D
Probab=23.63 E-value=28 Score=22.59 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=12.9
Q ss_pred HhhhhhhhCCeeeeec
Q psy14392 121 IQHEMDHLDGLLFTDS 136 (164)
Q Consensus 121 ~QHEiDHL~G~l~~Dr 136 (164)
|+|++=-|||.||.|-
T Consensus 49 fetavrklng~ly~~~ 64 (67)
T 3uip_D 49 FETAVKKLNGKLYLDG 64 (67)
T ss_dssp HHHHHHTTTTCCCC--
T ss_pred HHHHHHHhCCceecCC
Confidence 6899999999999883
No 33
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.46 E-value=24 Score=24.71 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=27.0
Q ss_pred eeCCCCcCCCccccccC---CeeEEEEECCCCCeEEEEEec
Q psy14392 78 LEGCASLKSLQAKVPRY---RKVQLTGLDETGKPDSWTAEG 115 (164)
Q Consensus 78 ~EgCLS~pg~~~~V~R~---~~I~v~y~d~~G~~~~~~~~g 115 (164)
.+.|.++-.+.+.|.+. ..+.|+|+|++|+++.+.-++
T Consensus 32 ~~~~~tweel~~mvk~~f~L~~~~IkY~DEenD~V~i~Sq~ 72 (101)
T 1wj6_A 32 DPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQG 72 (101)
T ss_dssp CTTTSCHHHHHHHHHHHHCCSSBCCEEECTTSCEECCCSHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCEEEEecHH
Confidence 44566665655555432 467999999999999887655
No 34
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=20.92 E-value=44 Score=23.53 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=47.4
Q ss_pred EEeceEEEecCceeeeCeeCCCCcCCC---ccccccCCeeEEEEECCCCCeEEEEEechhhhhHhhhhhhhCCeeeeecc
Q psy14392 61 WINPEMKILDYKDKVTALEGCASLKSL---QAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137 (164)
Q Consensus 61 ~INP~I~~~s~e~~~~~~EgCLS~pg~---~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~ 137 (164)
|.-|......+-...+..-.|+++..+ .-.|-+-..|.+.|.|.+|..+.+--+.-..-+++.- |.
T Consensus 12 ~~~~~~~~irdI~veedl~~~P~ykdLl~lmr~~F~~~DIaLNYrD~eGDLIrilddeDv~lmi~~s-----------r~ 80 (107)
T 1oey_J 12 YYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQA-----------RG 80 (107)
T ss_dssp EEETTEEEEEEEEECSCTTCCCCHHHHHHHHHHHHCCSSEEEEEECTTSCEEECCSHHHHHHHHHHC-----------CC
T ss_pred EecccCceeeeEEEccccccCCCHHHHHHHHHHHhcccceeeeeecCCCCEEEEcchHHHHHHHHHh-----------hc
Confidence 445544432222123345567777653 3445567799999999999999886665555444432 34
Q ss_pred Cccccccchhhh
Q psy14392 138 LPKSLECVCWQD 149 (164)
Q Consensus 138 ~~~~~~~~~~~~ 149 (164)
.+.+.+.+.|++
T Consensus 81 ~~s~k~~FPWeL 92 (107)
T 1oey_J 81 LPSQKRLFPWKL 92 (107)
T ss_dssp CCCTTCBCSSCE
T ss_pred CcccccccceeE
Confidence 555555777875
No 35
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=20.84 E-value=68 Score=22.81 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=25.0
Q ss_pred cCCeeEEEEECCCCCeEEEEEechhhhhHhh
Q psy14392 93 RYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123 (164)
Q Consensus 93 R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QH 123 (164)
+...+.+.|.|++|..+++.-+.-+-..++.
T Consensus 74 ~~~~f~l~YkDEdGDlItISsDeEL~~Al~~ 104 (117)
T 2ktr_A 74 RPGGFQAHYRAERGDLVAFSSDEELTMAMSY 104 (117)
T ss_dssp CSSCEEEEEECTTCCEEEECSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCEEEecCHHHHHHHHHh
Confidence 3567999999999999999887776666553
Done!