AmiGO: BLAST Results


BLAST match view associations BLAST with LOC100517402 LOC100517402 LOC100517402 Uncharacterized protein	protein from Sus scrofa	1.3e-29
BLAST match view associations BLAST with Pdf Pdf Pdf peptide deformylase (mitochondrial)	gene from Rattus norvegicus	1.2e-28
BLAST match view associations BLAST with CG31278 CG31278 CG31278	protein from Drosophila melanogaster	1.5e-28
BLAST match view associations BLAST with PDF PDF PDF Uncharacterized protein	protein from Bos taurus	1.0e-27
BLAST match view associations BLAST with PDF PDF PDF Uncharacterized protein	protein from Canis lupus familiaris	1.7e-27
BLAST match view associations BLAST with pdf pdf pdf peptide deformylase (mitochondrial)	gene_product from Danio rerio	2.2e-27
BLAST match view associations BLAST with CG31373 CG31373 CG31373	protein from Drosophila melanogaster	4.0e-26
BLAST match view associations BLAST with PDF PDF PDF Peptide deformylase, mitochondrial	protein from Homo sapiens	2.9e-25
BLAST match view associations BLAST with PDF1A PDF1A PDF1A peptide deformylase 1A	protein from Arabidopsis thaliana	2.6e-22
BLAST match view associations BLAST with DET_0760 DET_0760 DET_0760 peptide deformylase	protein from Dehalococcoides ethenogenes 195	1.2e-14
BLAST match view associations BLAST with PDF1B PDF1B PDF1B AT5G14660	protein from Arabidopsis thaliana	3.0e-14
BLAST match view associations BLAST with def def def	protein from Escherichia coli K-12	3.0e-14
BLAST match view associations BLAST with CHY_1484 CHY_1484 CHY_1484 peptide deformylase	protein from Carboxydothermus hydrogenoformans Z-2901	3.0e-14
BLAST match view associations BLAST with APH_1012 APH_1012 APH_1012 putative polypeptide deformylase	protein from Anaplasma phagocytophilum str. HZ	7.1e-13
BLAST match view associations BLAST with BA_4005 BA_4005 BA_4005 polypeptide deformylase	protein from Bacillus anthracis str. Ames	1.4e-12
BLAST match view associations BLAST with def2 def2 def2 Peptide deformylase 2	protein from Vibrio cholerae O1 biovar El Tor str. N16961	1.8e-12
BLAST match view associations BLAST with VC_A0150 VC_A0150 VC_A0150 polypeptide deformylase	protein from Vibrio cholerae O1 biovar El Tor	1.8e-12
BLAST match view associations BLAST with ECH_0073 ECH_0073 ECH_0073 peptide deformylase	protein from Ehrlichia chaffeensis str. Arkansas	2.4e-12
BLAST match view associations BLAST with def1 def1 def1 Peptide deformylase 1	protein from Vibrio cholerae O1 biovar El Tor str. N16961	7.4e-12
BLAST match view associations BLAST with VC_0046 VC_0046 VC_0046 polypeptide deformylase	protein from Vibrio cholerae O1 biovar El Tor	7.4e-12
BLAST match view associations BLAST with CJE_0184 CJE_0184 CJE_0184 peptide deformylase	protein from Campylobacter jejuni RM1221	5.8e-11
BLAST match view associations BLAST with APH_1372 APH_1372 APH_1372 peptide deformylase	protein from Anaplasma phagocytophilum str. HZ	1.2e-10
BLAST match view associations BLAST with NSE_0392 NSE_0392 NSE_0392 peptide deformylase	protein from Neorickettsia sennetsu str. Miyayama	1.2e-10
BLAST match view associations BLAST with ECH_0939 ECH_0939 ECH_0939 putative polypeptide deformylase	protein from Ehrlichia chaffeensis str. Arkansas	1.5e-10
BLAST match view associations BLAST with GSU_3456 GSU_3456 GSU_3456 polypeptide deformylase	protein from Geobacter sulfurreducens PCA	1.5e-10
BLAST match view associations BLAST with SPO_3219 SPO_3219 SPO_3219 peptide deformylase	protein from Ruegeria pomeroyi DSS-3	3.2e-10
BLAST match view associations BLAST with SO_2530 SO_2530 SO_2530 polypeptide deformylase	protein from Shewanella oneidensis MR-1	5.2e-10
BLAST match view associations BLAST with DDB_G0288157 DDB_G0288157 DDB_G0288157 Peptide deformylase, mitochondrial	gene from Dictyostelium discoideum	6.6e-10
BLAST match view associations BLAST with GSU_0129 GSU_0129 GSU_0129 polypeptide deformylase	protein from Geobacter sulfurreducens PCA	3.6e-09
BLAST match view associations BLAST with PFI0380c PFI0380c PFI0380c formylmethionine deformylase, putative	gene from Plasmodium falciparum	6.3e-09
BLAST match view associations BLAST with PFI0380c PFI0380c PFI0380c Formylmethionine deformylase, putative	protein from Plasmodium falciparum 3D7	6.3e-09
BLAST match view associations BLAST with def def def Peptide deformylase	protein from Mycobacterium tuberculosis	7.6e-09
BLAST match view associations BLAST with CBU_0993 CBU_0993 CBU_0993 peptide deformylase	protein from Coxiella burnetii RSA 493	7.6e-09
BLAST match view associations BLAST with CPS_0020 CPS_0020 CPS_0020 polypeptide deformylase	protein from Colwellia psychrerythraea 34H	1.2e-08
BLAST match view associations BLAST with SO_0032 SO_0032 SO_0032 polypeptide deformylase	protein from Shewanella oneidensis MR-1	3.3e-08
BLAST match view associations BLAST with BA_4187 BA_4187 BA_4187 polypeptide deformylase	protein from Bacillus anthracis str. Ames	6.8e-08
BLAST match view associations BLAST with CPS_0407 CPS_0407 CPS_0407 polypeptide deformylase	protein from Colwellia psychrerythraea 34H	6.8e-08
BLAST match view associations BLAST with SO_1062 SO_1062 SO_1062 polypeptide deformylase	protein from Shewanella oneidensis MR-1	8.7e-08
BLAST match view associations BLAST with SPO_3217 SPO_3217 SPO_3217 peptide deformylase	protein from Ruegeria pomeroyi DSS-3	1.7e-06
BLAST match view associations BLAST with SPO_3218 SPO_3218 SPO_3218 peptide deformylase	protein from Ruegeria pomeroyi DSS-3	2.6e-06

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy14392
        (164 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|F1S391 - symbol:PDF "Uncharacterized protein" s...   328  1.3e-29   1
RGD|1582894 - symbol:Pdf "peptide deformylase (mitochondr...   319  1.2e-28   1
RGD|2321990 - symbol:LOC100363967 "peptide deformylase-li...   319  1.2e-28   1
FB|FBgn0051278 - symbol:CG31278 species:7227 "Drosophila ...   318  1.5e-28   1
UNIPROTKB|F1N5S7 - symbol:PDF "Uncharacterized protein" s...   310  1.0e-27   1
UNIPROTKB|J9NUA4 - symbol:PDF "Uncharacterized protein" s...   308  1.7e-27   1
ZFIN|ZDB-GENE-050913-42 - symbol:pdf "peptide deformylase...   307  2.2e-27   1
FB|FBgn0051373 - symbol:CG31373 species:7227 "Drosophila ...   295  4.0e-26   1
UNIPROTKB|Q9HBH1 - symbol:PDF "Peptide deformylase, mitoc...   287  2.9e-25   1
TAIR|locus:2037733 - symbol:PDF1A "peptide deformylase 1A...   259  2.6e-22   1
TIGR_CMR|DET_0760 - symbol:DET_0760 "peptide deformylase"...   121  1.2e-14   2
TAIR|locus:2222667 - symbol:PDF1B "peptide deformylase 1B...   183  3.0e-14   1
UNIPROTKB|P0A6K3 - symbol:def species:83333 "Escherichia ...   161  3.0e-14   2
TIGR_CMR|CHY_1484 - symbol:CHY_1484 "peptide deformylase"...   144  3.0e-14   2
TIGR_CMR|APH_1012 - symbol:APH_1012 "putative polypeptide...   170  7.1e-13   1
TIGR_CMR|BA_4005 - symbol:BA_4005 "polypeptide deformylas...   125  1.4e-12   2
UNIPROTKB|Q9KN16 - symbol:def2 "Peptide deformylase 2" sp...   139  1.8e-12   2
TIGR_CMR|VC_A0150 - symbol:VC_A0150 "polypeptide deformyl...   139  1.8e-12   2
TIGR_CMR|ECH_0073 - symbol:ECH_0073 "peptide deformylase"...   165  2.4e-12   1
UNIPROTKB|Q9KVU3 - symbol:def1 "Peptide deformylase 1" sp...   138  7.4e-12   2
TIGR_CMR|VC_0046 - symbol:VC_0046 "polypeptide deformylas...   138  7.4e-12   2
TIGR_CMR|CJE_0184 - symbol:CJE_0184 "peptide deformylase"...   152  5.8e-11   1
TIGR_CMR|APH_1372 - symbol:APH_1372 "peptide deformylase"...   149  1.2e-10   1
TIGR_CMR|NSE_0392 - symbol:NSE_0392 "peptide deformylase"...   149  1.2e-10   1
TIGR_CMR|ECH_0939 - symbol:ECH_0939 "putative polypeptide...   148  1.5e-10   1
TIGR_CMR|GSU_3456 - symbol:GSU_3456 "polypeptide deformyl...   148  1.5e-10   1
TIGR_CMR|SPO_3219 - symbol:SPO_3219 "peptide deformylase"...   145  3.2e-10   1
TIGR_CMR|SO_2530 - symbol:SO_2530 "polypeptide deformylas...   143  5.2e-10   1
DICTYBASE|DDB_G0288157 - symbol:DDB_G0288157 "Peptide def...   113  6.6e-10   2
TIGR_CMR|GSU_0129 - symbol:GSU_0129 "polypeptide deformyl...   135  3.6e-09   1
GENEDB_PFALCIPARUM|PFI0380c - symbol:PFI0380c "formylmeth...   135  6.3e-09   1
UNIPROTKB|Q8I372 - symbol:PFI0380c "Formylmethionine defo...   135  6.3e-09   1
UNIPROTKB|P96275 - symbol:def "Peptide deformylase" speci...   132  7.6e-09   1
TIGR_CMR|CBU_0993 - symbol:CBU_0993 "peptide deformylase"...   132  7.6e-09   1
TIGR_CMR|CPS_0020 - symbol:CPS_0020 "polypeptide deformyl...   130  1.2e-08   1
TIGR_CMR|SO_0032 - symbol:SO_0032 "polypeptide deformylas...   126  3.3e-08   1
TIGR_CMR|BA_4187 - symbol:BA_4187 "polypeptide deformylas...   123  6.8e-08   1
TIGR_CMR|CPS_0407 - symbol:CPS_0407 "polypeptide deformyl...   123  6.8e-08   1
TIGR_CMR|SO_1062 - symbol:SO_1062 "polypeptide deformylas...   122  8.7e-08   1
TIGR_CMR|SPO_3217 - symbol:SPO_3217 "peptide deformylase"...   114  1.7e-06   1
TIGR_CMR|SPO_3218 - symbol:SPO_3218 "peptide deformylase"...   113  2.6e-06   1


>UNIPROTKB|F1S391 [details] [associations]
            symbol:PDF "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0042586 "peptide deformylase activity" evidence=IEA]
            [GO:0031365 "N-terminal protein amino acid modification"
            evidence=IEA] [GO:0018206 "peptidyl-methionine modification"
            evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0005506 "iron ion binding" evidence=IEA]
            HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
            Pfam:PF01327 GO:GO:0005739 GO:GO:0005506 GO:GO:0008284
            GO:GO:0031365 GO:GO:0018206 GO:GO:0042586 Gene3D:3.90.45.10
            InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420 OMA:MDSRTFT
            GeneTree:ENSGT00390000018698 EMBL:FP015939
            Ensembl:ENSSSCT00000003055 Uniprot:F1S391
        Length = 221

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 65/149 (43%), Positives = 96/149 (64%)

Query:     4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
             ++ ++  VM+R    GLSAPQ+G+PL++  + FPD         +++  +M+ FP  V++
Sbjct:    73 LVQRLVQVMRRRHCVGLSAPQLGVPLQVLALEFPDALFHACAPRLREIRQMEPFPLHVFV 132

Query:    63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
             NP +++LD +  VT  EGC S+    A VPR++ VQ++GLD  G+P  W A GWAARIIQ
Sbjct:   133 NPSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPRGEPVVWQASGWAARIIQ 191

Query:   123 HEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
             HEMDHL GLLF D M  K+   + W ++N
Sbjct:   192 HEMDHLQGLLFIDKMDSKTFTNIHWMEVN 220


>RGD|1582894 [details] [associations]
            symbol:Pdf "peptide deformylase (mitochondrial)" species:10116
            "Rattus norvegicus" [GO:0005739 "mitochondrion" evidence=ISO]
            [GO:0008284 "positive regulation of cell proliferation"
            evidence=ISO] [GO:0018206 "peptidyl-methionine modification"
            evidence=ISO] [GO:0031365 "N-terminal protein amino acid
            modification" evidence=ISO] [GO:0042586 "peptide deformylase
            activity" evidence=ISO] REFSEQ:XM_001073696 Ncbi:XP_001073696
        Length = 231

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 65/149 (43%), Positives = 95/149 (63%)

Query:     4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPE-ESFSEGDIKKFEMQAFPHMVWI 62
             ++ Q+  VM+R    GLSAPQ+G+PL++ ++ FPD    +FS    +  +M+ FP  V +
Sbjct:    83 LVEQLVQVMRRRGCVGLSAPQLGVPLQVLVLEFPDRLFRAFSPRLRELRQMEPFPLRVLV 142

Query:    63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
             NP +++LD +  VT  EGC S+    A VPR++ VQ++GLD  G+P  W+A GW ARIIQ
Sbjct:   143 NPSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTARIIQ 201

Query:   123 HEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
             HEMDHL G LF D M   +   + W ++N
Sbjct:   202 HEMDHLHGCLFIDKMDSGTFTNLHWMEVN 230


>RGD|2321990 [details] [associations]
            symbol:LOC100363967 "peptide deformylase-like protein-like"
            species:10116 "Rattus norvegicus" [GO:0005506 "iron ion binding"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0008284
            "positive regulation of cell proliferation" evidence=IEA]
            [GO:0018206 "peptidyl-methionine modification" evidence=IEA]
            [GO:0031365 "N-terminal protein amino acid modification"
            evidence=IEA] [GO:0042586 "peptide deformylase activity"
            evidence=IEA] HAMAP:MF_00163 InterPro:IPR000181 PRINTS:PR01576
            Pfam:PF01327 RGD:2321990 GO:GO:0005739 GO:GO:0005506 GO:GO:0008284
            GO:GO:0031365 GO:GO:0018206 GO:GO:0042586 Gene3D:3.90.45.10
            InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
            GeneTree:ENSGT00390000018698 IPI:IPI00363538 PRIDE:F1LVY9
            Ensembl:ENSRNOT00000036634 Uniprot:F1LVY9
        Length = 255

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 65/149 (43%), Positives = 95/149 (63%)

Query:     4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPE-ESFSEGDIKKFEMQAFPHMVWI 62
             ++ Q+  VM+R    GLSAPQ+G+PL++ ++ FPD    +FS    +  +M+ FP  V +
Sbjct:   107 LVEQLVQVMRRRGCVGLSAPQLGVPLQVLVLEFPDRLFRAFSPRLRELRQMEPFPLRVLV 166

Query:    63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
             NP +++LD +  VT  EGC S+    A VPR++ VQ++GLD  G+P  W+A GW ARIIQ
Sbjct:   167 NPSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTARIIQ 225

Query:   123 HEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
             HEMDHL G LF D M   +   + W ++N
Sbjct:   226 HEMDHLHGCLFIDKMDSGTFTNLHWMEVN 254


>FB|FBgn0051278 [details] [associations]
            symbol:CG31278 species:7227 "Drosophila melanogaster"
            [GO:0042586 "peptide deformylase activity" evidence=ISS]
            [GO:0005506 "iron ion binding" evidence=IEA] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            EMBL:AE014297 GO:GO:0005506 eggNOG:COG0242 KO:K01462 GO:GO:0042586
            Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
            SUPFAM:SSF56420 OMA:MDSRTFT GeneTree:ENSGT00390000018698
            OrthoDB:EOG4F4QT0 EMBL:BT015988 RefSeq:NP_731494.1 UniGene:Dm.17011
            HSSP:P27251 SMR:Q9VGY2 STRING:Q9VGY2 EnsemblMetazoa:FBtr0082319
            GeneID:41282 KEGG:dme:Dmel_CG31278 UCSC:CG31278-RA
            FlyBase:FBgn0051278 InParanoid:Q9VGY2 GenomeRNAi:41282
            NextBio:823085 Uniprot:Q9VGY2
        Length = 238

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 60/163 (36%), Positives = 97/163 (59%)

Query:     1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP-EESFSEGDIKKFEMQAFPHM 59
             +K I+ +M  V+++FD  G++APQ+G+ LR+  + F     +   E   +  +M   P  
Sbjct:    76 IKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFKGRIRKELPEAVYQARQMSELPLT 135

Query:    60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
             ++INP + + +Y  K+   EGC S++   A+V R+  V+LTGLD+ G        GW AR
Sbjct:   136 IFINPVLTVTNYA-KLKHPEGCMSVRGYSAEVERFEGVKLTGLDQLGNQSELALSGWNAR 194

Query:   120 IIQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLELRYY 162
             I QHEMDHL+G L+TD M   +  C CW+ +N ++G +E+ +Y
Sbjct:   195 IAQHEMDHLEGKLYTDHMDRSTFACTCWEAVNTKSGRVEIPFY 237


>UNIPROTKB|F1N5S7 [details] [associations]
            symbol:PDF "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0042586 "peptide deformylase activity" evidence=IEA]
            [GO:0031365 "N-terminal protein amino acid modification"
            evidence=IEA] [GO:0018206 "peptidyl-methionine modification"
            evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0005506 "iron ion binding" evidence=IEA]
            HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
            Pfam:PF01327 GO:GO:0005739 GO:GO:0005506 GO:GO:0008284
            GO:GO:0031365 GO:GO:0018206 GO:GO:0042586 Gene3D:3.90.45.10
            InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420 OMA:MDSRTFT
            GeneTree:ENSGT00390000018698 EMBL:DAAA02046699 IPI:IPI00712973
            Ensembl:ENSBTAT00000002176 Uniprot:F1N5S7
        Length = 230

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 62/149 (41%), Positives = 94/149 (63%)

Query:     4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
             ++ ++  VM+R    GLSAPQ+G+PL++  + FP+         +++  +M+ FP  V++
Sbjct:    82 LVERLVQVMRRRHCVGLSAPQLGVPLQVLALEFPETLFRACAPRVREARQMEPFPLRVFV 141

Query:    63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
             NP +++LD +  VT  EGC S+    A VPR++ VQ++GLD  G+   W A GWAARIIQ
Sbjct:   142 NPSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPRGEQVVWQASGWAARIIQ 200

Query:   123 HEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
             HEMDHL G LF D M  K+   + W ++N
Sbjct:   201 HEMDHLQGCLFIDKMDSKTFTNIHWMEVN 229


>UNIPROTKB|J9NUA4 [details] [associations]
            symbol:PDF "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0042586 "peptide deformylase activity"
            evidence=IEA] [GO:0005506 "iron ion binding" evidence=IEA]
            HAMAP:MF_00163 InterPro:IPR000181 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
            PANTHER:PTHR10458 SUPFAM:SSF56420 GeneTree:ENSGT00390000018698
            EMBL:AAEX03004108 Ensembl:ENSCAFT00000044172 OMA:EGCESIR
            Uniprot:J9NUA4
        Length = 245

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 62/149 (41%), Positives = 93/149 (62%)

Query:     4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF-EMQAFPHMVWI 62
             ++ ++  VM+R    GLSAPQ+G+PL++    FP+         +++  +M+ FP  V +
Sbjct:    97 LVQRLVQVMRRRHCVGLSAPQLGVPLQVLAFEFPEALFRACAPRLRETRQMEPFPLRVVV 156

Query:    63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
             NP +++LD + +VT  EGC S+    A VPR++ VQ++GLD  G+   W A GWAARIIQ
Sbjct:   157 NPSLRVLDSR-RVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEQVVWQASGWAARIIQ 215

Query:   123 HEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
             HEMDHL G LF D M  K+   + W ++N
Sbjct:   216 HEMDHLQGCLFIDKMDSKTFTNIHWMEVN 244


>ZFIN|ZDB-GENE-050913-42 [details] [associations]
            symbol:pdf "peptide deformylase (mitochondrial)"
            species:7955 "Danio rerio" [GO:0042586 "peptide deformylase
            activity" evidence=IEA;ISS] [GO:0005506 "iron ion binding"
            evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=ISS] [GO:0031365 "N-terminal protein amino
            acid modification" evidence=ISS] [GO:0005739 "mitochondrion"
            evidence=ISS] [GO:0018206 "peptidyl-methionine modification"
            evidence=ISS] HAMAP:MF_00163 InterPro:IPR000181 PRINTS:PR01576
            Pfam:PF01327 ZFIN:ZDB-GENE-050913-42 GO:GO:0005739 GO:GO:0005506
            GO:GO:0008284 GO:GO:0031365 GO:GO:0018206 eggNOG:COG0242
            HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
            InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420 CTD:64146
            HOVERGEN:HBG018948 OMA:MDSRTFT GeneTree:ENSGT00390000018698
            EMBL:CT025859 EMBL:BC097196 IPI:IPI00513642 RefSeq:NP_001028902.1
            UniGene:Dr.87399 STRING:Q4V8U4 Ensembl:ENSDART00000010129
            GeneID:619248 KEGG:dre:619248 InParanoid:Q4V8U4 OrthoDB:EOG49KFRR
            NextBio:20901467 Uniprot:Q4V8U4
        Length = 247

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 62/150 (41%), Positives = 95/150 (63%)

Query:     4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDP--EESFSEGDIKKFEMQAFPHMVW 61
             +I  +  VM++ +  GLSAPQ+G+PLR+  + +P    EES S   ++   + A P M++
Sbjct:    99 VIKTLVKVMRKLECVGLSAPQIGVPLRILALEYPKKMLEES-STASVEARGLVAVPLMIF 157

Query:    62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
             INP++++LD +  V   E C S+    A VPRY  V+++GL+E  +  SW A GW ARI+
Sbjct:   158 INPQLRVLDGRT-VIFQEACESISGYSASVPRYVSVEVSGLNEKAEEVSWKASGWPARIL 216

Query:   122 QHEMDHLDGLLFTDSMLPKSLECVCWQDIN 151
             QHEMDHL+G+L+ D M  K+   V W++ N
Sbjct:   217 QHEMDHLNGVLYIDHMDSKTFINVKWEEHN 246


>FB|FBgn0051373 [details] [associations]
            symbol:CG31373 species:7227 "Drosophila melanogaster"
            [GO:0042586 "peptide deformylase activity" evidence=ISS]
            [GO:0005506 "iron ion binding" evidence=IEA] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            EMBL:AE014297 GO:GO:0005506 KO:K01462 GO:GO:0042586
            Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
            SUPFAM:SSF56420 OMA:LIGRWKR RefSeq:NP_731495.1 UniGene:Dm.26560
            HSSP:P96113 ProteinModelPortal:Q8INL3 SMR:Q8INL3 MINT:MINT-970779
            STRING:Q8INL3 PRIDE:Q8INL3 EnsemblMetazoa:FBtr0082318 GeneID:318700
            KEGG:dme:Dmel_CG31373 UCSC:CG31373-RA FlyBase:FBgn0051373
            GeneTree:ENSGT00390000018698 InParanoid:Q8INL3 OrthoDB:EOG4F4QT0
            PhylomeDB:Q8INL3 GenomeRNAi:318700 NextBio:845923
            ArrayExpress:Q8INL3 Bgee:Q8INL3 Uniprot:Q8INL3
        Length = 196

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 58/153 (37%), Positives = 91/153 (59%)

Query:     4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPD-PEESFSEGDIKKFEMQAFPHMVWI 62
             II  M  V++ +D  G++APQVG+PLR+ ++ F +  +E F     ++ +M   P  V+I
Sbjct:    37 IIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFREGKQEQFKPEIYEERKMSILPLAVFI 96

Query:    63 NPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQ 122
             NPE++I+  +      EGC S++   A+V RY KV++ G+ + G P     EGW ARI Q
Sbjct:    97 NPELEIISSQVNKHP-EGCMSVRGYSAEVERYDKVRIRGIGKLGTPSEMELEGWNARIAQ 155

Query:   123 HEMDHLDGLLFTDSMLPKSLECVCWQDINLQNG 155
             HE+DHL+G ++ D M   +  C+ W+ IN   G
Sbjct:   156 HEVDHLNGTIYMDRMDLSTFNCILWEQINAAEG 188


>UNIPROTKB|Q9HBH1 [details] [associations]
            symbol:PDF "Peptide deformylase, mitochondrial"
            species:9606 "Homo sapiens" [GO:0005506 "iron ion binding"
            evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0008284 "positive regulation of
            cell proliferation" evidence=IMP] [GO:0018206 "peptidyl-methionine
            modification" evidence=IDA] [GO:0031365 "N-terminal protein amino
            acid modification" evidence=IDA] [GO:0042586 "peptide deformylase
            activity" evidence=IDA] InterPro:IPR000181 PRINTS:PR01576
            Pfam:PF01327 GO:GO:0005739 GO:GO:0005506 GO:GO:0006412
            GO:GO:0008284 GO:GO:0031365 GO:GO:0018206 UniGene:Hs.130849
            GermOnline:ENSG00000157312 HOGENOM:HOG000243508 KO:K01462
            GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
            PANTHER:PTHR10458 SUPFAM:SSF56420 EMBL:AF239156 EMBL:AF322879
            EMBL:BC019912 IPI:IPI00007060 RefSeq:NP_071736.1 PDB:3G5K PDB:3G5P
            PDBsum:3G5K PDBsum:3G5P ProteinModelPortal:Q9HBH1 SMR:Q9HBH1
            STRING:Q9HBH1 DMDM:17433054 PeptideAtlas:Q9HBH1 PRIDE:Q9HBH1
            Ensembl:ENST00000288022 GeneID:64146 KEGG:hsa:64146 UCSC:uc002ewx.1
            CTD:64146 GeneCards:GC16M069362 H-InvDB:HIX0013187 HGNC:HGNC:30012
            neXtProt:NX_Q9HBH1 PharmGKB:PA144596394 HOVERGEN:HBG018948
            InParanoid:Q9HBH1 OMA:MDSRTFT SABIO-RK:Q9HBH1 BindingDB:Q9HBH1
            ChEMBL:CHEMBL4647 EvolutionaryTrace:Q9HBH1 GenomeRNAi:64146
            NextBio:66046 Bgee:Q9HBH1 Genevestigator:Q9HBH1 Uniprot:Q9HBH1
        Length = 243

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 63/148 (42%), Positives = 90/148 (60%)

Query:     7 QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKF---EMQAFPHMVWIN 63
             ++  VM+R    GLSAPQ+G+P +  ++A   PE    E   ++    +M+ FP  V++N
Sbjct:    98 RLVQVMRRRRCVGLSAPQLGVPRQ--VLALELPEALCRECPPRQRALRQMEPFPLRVFVN 155

Query:    64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
             P +++LD +  VT  EGC S+    A VPR++ VQ++GLD  G+   W A GWAARIIQH
Sbjct:   156 PSLRVLDSR-LVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQH 214

Query:   124 EMDHLDGLLFTDSMLPKSLECVCWQDIN 151
             EMDHL G LF D M  ++   V W  +N
Sbjct:   215 EMDHLQGCLFIDKMDSRTFTNVYWMKVN 242


>TAIR|locus:2037733 [details] [associations]
            symbol:PDF1A "peptide deformylase 1A" species:3702
            "Arabidopsis thaliana" [GO:0005506 "iron ion binding" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=ISM;IDA] [GO:0006412
            "translation" evidence=ISS] [GO:0042586 "peptide deformylase
            activity" evidence=IEA;ISS;IDA] [GO:0043686 "co-translational
            protein modification" evidence=IDA] [GO:0009505 "plant-type cell
            wall" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
            InterPro:IPR000181 PRINTS:PR01576 Pfam:PF01327 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0009507 GO:GO:0009570
            GO:GO:0005506 GO:GO:0006412 EMBL:AC007591 GO:GO:0009505
            EMBL:AF250959 EMBL:AF361861 EMBL:AY129485 IPI:IPI00534874
            PIR:E86288 RefSeq:NP_563974.1 UniGene:At.11423 UniGene:At.19791
            PDB:1ZXZ PDB:1ZY0 PDB:1ZY1 PDBsum:1ZXZ PDBsum:1ZY0 PDBsum:1ZY1
            ProteinModelPortal:Q9FV53 SMR:Q9FV53 STRING:Q9FV53 PaxDb:Q9FV53
            PRIDE:Q9FV53 EnsemblPlants:AT1G15390.1 GeneID:838109
            KEGG:ath:AT1G15390 TAIR:At1g15390 eggNOG:COG0242
            HOGENOM:HOG000243508 InParanoid:Q9FV53 KO:K01462 OMA:LTSGEGC
            ProtClustDB:CLSN2687814 SABIO-RK:Q9FV53 ChEMBL:CHEMBL1075041
            EvolutionaryTrace:Q9FV53 Genevestigator:Q9FV53 GermOnline:AT1G15390
            GO:GO:0042586 GO:GO:0043686 Gene3D:3.90.45.10 InterPro:IPR023635
            PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079 Uniprot:Q9FV53
        Length = 269

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 65/159 (40%), Positives = 87/159 (54%)

Query:     4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFS---EGDIKKFEMQAFPHMV 60
             II  M  VM+     GL+APQ+G+PLR  I+   D +E  S   + +I   E + F  MV
Sbjct:   111 IIDDMIKVMRLAPGVGLAAPQIGVPLR--IIVLEDTKEYISYAPKEEILAQERRHFDLMV 168

Query:    61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
              +NP +K    K K    EGC S+   +A V RY +V +TG D  GK     A GW ARI
Sbjct:   169 MVNPVLKERSNK-KALFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARI 227

Query:   121 IQHEMDHLDGLLFTDSMLPKSLECVCWQDINLQNGLLEL 159
             +QHE DHLDG L+ D M+P++   V   D+ L  G  +L
Sbjct:   228 LQHECDHLDGNLYVDKMVPRTFRTVDNLDLPLAEGCPKL 266


>TIGR_CMR|DET_0760 [details] [associations]
            symbol:DET_0760 "peptide deformylase" species:243164
            "Dehalococcoides ethenogenes 195" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0042586 "peptide
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 GO:GO:0006412 EMBL:CP000027 GenomeReviews:CP000027_GR
            eggNOG:COG0242 HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586
            Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
            SUPFAM:SSF56420 TIGRFAMs:TIGR00079 ProtClustDB:PRK00150 HSSP:P0A6K3
            RefSeq:YP_181493.1 ProteinModelPortal:Q3Z8F6 STRING:Q3Z8F6
            GeneID:3229925 KEGG:det:DET0760 PATRIC:21608581 OMA:AMATIRQ
            BioCyc:DETH243164:GJNF-761-MONOMER Uniprot:Q3Z8F6
        Length = 167

 Score = 121 (47.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query:    60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
             V INPE+   + + +VT  EGC S+     ++ R   V   GLD  GK       G  A+
Sbjct:    71 VLINPEIVKKEGQRQVT--EGCLSIPGYFGELTRAETVTAKGLDRHGKAFRIKGTGVVAQ 128

Query:   120 IIQHEMDHLDGLLFTDSM 137
             +++HE +HLDG+L+ D +
Sbjct:   129 LLEHETEHLDGILYIDHL 146

 Score = 79 (32.9 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query:     1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEES 42
             ++ +I  M   MK  D  GL+APQVG+ LRL +   PD +E+
Sbjct:    28 IQTLIDDMIETMKSADGAGLAAPQVGVSLRLIVFREPDAKEA 69


>TAIR|locus:2222667 [details] [associations]
            symbol:PDF1B "peptide deformylase 1B" species:3702
            "Arabidopsis thaliana" [GO:0005506 "iron ion binding" evidence=IEA]
            [GO:0006412 "translation" evidence=ISS] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0042586 "peptide deformylase activity"
            evidence=IEA;ISS;IDA] [GO:0010027 "thylakoid membrane organization"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA]
            InterPro:IPR000181 PRINTS:PR01576 Pfam:PF01327 GO:GO:0005739
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009507 GO:GO:0009570
            GO:GO:0005506 GO:GO:0006412 eggNOG:COG0242 KO:K01462 GO:GO:0042586
            Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
            SUPFAM:SSF56420 TIGRFAMs:TIGR00079 EMBL:AF269165 EMBL:AL163792
            EMBL:AY050879 EMBL:AY096673 EMBL:AY085417 IPI:IPI00542984
            PIR:T48639 RefSeq:NP_196970.1 RefSeq:NP_850821.1 UniGene:At.5087
            PDB:3CPM PDB:3M6O PDB:3M6P PDB:3M6Q PDB:3M6R PDB:3O3J PDB:3PN2
            PDB:3PN3 PDB:3PN4 PDB:3PN5 PDB:3PN6 PDBsum:3CPM PDBsum:3M6O
            PDBsum:3M6P PDBsum:3M6Q PDBsum:3M6R PDBsum:3O3J PDBsum:3PN2
            PDBsum:3PN3 PDBsum:3PN4 PDBsum:3PN5 PDBsum:3PN6
            ProteinModelPortal:Q9FUZ2 SMR:Q9FUZ2 IntAct:Q9FUZ2 STRING:Q9FUZ2
            PaxDb:Q9FUZ2 PRIDE:Q9FUZ2 EnsemblPlants:AT5G14660.1
            EnsemblPlants:AT5G14660.2 GeneID:831318 KEGG:ath:AT5G14660
            TAIR:At5g14660 HOGENOM:HOG000243509 InParanoid:Q9FUZ2 OMA:PEQSHEI
            PhylomeDB:Q9FUZ2 ProtClustDB:CLSN2687238 SABIO-RK:Q9FUZ2
            EvolutionaryTrace:Q9FUZ2 Genevestigator:Q9FUZ2 GermOnline:AT5G14660
            Uniprot:Q9FUZ2
        Length = 273

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 52/146 (35%), Positives = 78/146 (53%)

Query:     1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
             +K ++  M +VM + D  GLSAPQVGL ++L +    +P     EG            +V
Sbjct:   105 LKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVF---NPAGEPGEGK----------EIV 151

Query:    61 WINPEMKILDYKDKVTAL-EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
              +NP++K   Y DK+    EGC S   + A+V R + V++   D TG+  S +     AR
Sbjct:   152 LVNPKIK--KYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPAR 209

Query:   120 IIQHEMDHLDGLLFTDSMLPKSLECV 145
             I QHE DHL+G+LF D M  + L+ +
Sbjct:   210 IFQHEYDHLEGVLFFDRMTDQVLDSI 235


>UNIPROTKB|P0A6K3 [details] [associations]
            symbol:def species:83333 "Escherichia coli K-12"
            [GO:0008270 "zinc ion binding" evidence=IDA] [GO:0042586 "peptide
            deformylase activity" evidence=IEA;IDA] [GO:0016787 "hydrolase
            activity" evidence=IDA] [GO:0031365 "N-terminal protein amino acid
            modification" evidence=IDA] [GO:0008198 "ferrous iron binding"
            evidence=IDA] [GO:0043686 "co-translational protein modification"
            evidence=IPI] [GO:0006412 "translation" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] HAMAP:MF_00163 InterPro:IPR000181
            PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327 GO:GO:0008198
            EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0008270 EMBL:U18997
            GO:GO:0031365 eggNOG:COG0242 KO:K01462 GO:GO:0042586 GO:GO:0043686
            Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
            SUPFAM:SSF56420 TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:IQIGVPR
            ProtClustDB:PRK00150 EMBL:X77800 EMBL:X63666 EMBL:X65946
            EMBL:X77091 PIR:S23107 RefSeq:NP_417745.1 RefSeq:YP_492146.1
            PDB:1BS4 PDB:1BS5 PDB:1BS6 PDB:1BS7 PDB:1BS8 PDB:1BSJ PDB:1BSK
            PDB:1BSZ PDB:1DEF PDB:1DFF PDB:1DTF PDB:1G27 PDB:1G2A PDB:1ICJ
            PDB:1LRU PDB:1XEM PDB:1XEN PDB:1XEO PDB:2AI8 PDB:2DEF PDB:2DTF
            PDB:2KMN PDB:2VHM PDB:2W3T PDB:2W3U PDB:3K6L PDB:4AL2 PDB:4AL3
            PDBsum:1BS4 PDBsum:1BS5 PDBsum:1BS6 PDBsum:1BS7 PDBsum:1BS8
            PDBsum:1BSJ PDBsum:1BSK PDBsum:1BSZ PDBsum:1DEF PDBsum:1DFF
            PDBsum:1DTF PDBsum:1G27 PDBsum:1G2A PDBsum:1ICJ PDBsum:1LRU
            PDBsum:1XEM PDBsum:1XEN PDBsum:1XEO PDBsum:2AI8 PDBsum:2DEF
            PDBsum:2DTF PDBsum:2KMN PDBsum:2VHM PDBsum:2W3T PDBsum:2W3U
            PDBsum:3K6L PDBsum:4AL2 PDBsum:4AL3 ProteinModelPortal:P0A6K3
            SMR:P0A6K3 DIP:DIP-47953N IntAct:P0A6K3 PaxDb:P0A6K3 PRIDE:P0A6K3
            EnsemblBacteria:EBESCT00000002247 EnsemblBacteria:EBESCT00000017291
            GeneID:12934422 GeneID:947780 KEGG:ecj:Y75_p3890 KEGG:eco:b3287
            PATRIC:32122006 EchoBASE:EB1410 EcoGene:EG11440
            BioCyc:EcoCyc:EG11440-MONOMER BioCyc:ECOL316407:JW3248-MONOMER
            BioCyc:MetaCyc:EG11440-MONOMER SABIO-RK:P0A6K3 BindingDB:P0A6K3
            ChEMBL:CHEMBL4976 EvolutionaryTrace:P0A6K3 Genevestigator:P0A6K3
            Uniprot:P0A6K3
        Length = 169

 Score = 161 (61.7 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
 Identities = 37/81 (45%), Positives = 47/81 (58%)

Query:    59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
             +V INPE+  L+   +    EGC S+   +A VPR  KV++  LD  GKP    A+G  A
Sbjct:    71 LVLINPEL--LEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLA 128

Query:   119 RIIQHEMDHLDGLLFTDSMLP 139
               IQHEMDHL G LF D + P
Sbjct:   129 ICIQHEMDHLVGKLFMDYLSP 149

 Score = 35 (17.4 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query:     4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIV 34
             I+  M   M   +  GL+A QV +  R+ ++
Sbjct:    31 IVDDMFETMYAEEGIGLAATQVDIHQRIIVI 61


>TIGR_CMR|CHY_1484 [details] [associations]
            symbol:CHY_1484 "peptide deformylase" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0006464 "cellular
            protein modification process" evidence=ISS] [GO:0042586 "peptide
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412
            eggNOG:COG0242 HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586
            Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
            SUPFAM:SSF56420 TIGRFAMs:TIGR00079 ProtClustDB:PRK00150
            RefSeq:YP_360316.1 HSSP:P0A6K3 ProteinModelPortal:Q3AC18
            STRING:Q3AC18 GeneID:3727424 KEGG:chy:CHY_1484 PATRIC:21276099
            OMA:YVKVRAQ BioCyc:CHYD246194:GJCN-1483-MONOMER Uniprot:Q3AC18
        Length = 152

 Score = 144 (55.7 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
 Identities = 31/74 (41%), Positives = 46/74 (62%)

Query:    62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
             INPE  I++   +   +EGC S+  +Q +V R +KV + GL+  G+     AEG  AR  
Sbjct:    71 INPE--IIEVSGEEKDIEGCLSVPGVQGEVVRAKKVTVKGLNRYGEEIVIPAEGLLARAF 128

Query:   122 QHEMDHLDGLLFTD 135
             QHE+DHL+G+LF +
Sbjct:   129 QHEIDHLNGILFVE 142

 Score = 52 (23.4 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query:     4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIV 34
             ++  M + M  ++  GL+APQ+G+  R  +V
Sbjct:    31 LLENMADTMYAYNGVGLAAPQIGVSKRAIVV 61


>TIGR_CMR|APH_1012 [details] [associations]
            symbol:APH_1012 "putative polypeptide deformylase"
            species:212042 "Anaplasma phagocytophilum HZ" [GO:0006464 "cellular
            protein modification process" evidence=ISS] [GO:0042586 "peptide
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 GO:GO:0006412 EMBL:CP000235 GenomeReviews:CP000235_GR
            eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
            InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
            TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:ALANDMM
            ProtClustDB:CLSK749347 RefSeq:YP_505573.1 STRING:Q2GJ78
            GeneID:3930427 KEGG:aph:APH_1012 PATRIC:20950760
            BioCyc:APHA212042:GHPM-1020-MONOMER Uniprot:Q2GJ78
        Length = 197

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 53/162 (32%), Positives = 82/162 (50%)

Query:     4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPH---MV 60
             I+ +M  + +R D  GLSA Q+G P+R+F++       + +E D+K        +   +V
Sbjct:    32 IVNEMIKIAERGDTVGLSAVQLGYPIRVFVIDMFSGLFNITE-DLKVISGHHSHNTRSLV 90

Query:    61 WINPEMKILDYK-DKVTALEGCASLKSL-QAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
              INP+  I+ +  + VT  EGC S+KS     + R   V L   D  G         W A
Sbjct:    91 CINPQ--IVSFSGETVTLFEGCLSVKSYGMVGIQRPGNVDLKYTDLAGNVCVIRTFNWLA 148

Query:   119 RIIQHEMDHLDGLLFT---DSMLPKSLECVCWQDINLQNGLL 157
             R +QHEMDHL+G+L     D++  KS + V  +D +  + LL
Sbjct:   149 RCVQHEMDHLNGVLLANMLDNIKNKSAQSVSEEDFSSVHILL 190


>TIGR_CMR|BA_4005 [details] [associations]
            symbol:BA_4005 "polypeptide deformylase" species:198094
            "Bacillus anthracis str. Ames" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0008463 "formylmethionine
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
            GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0006412 eggNOG:COG0242
            HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
            InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
            TIGRFAMs:TIGR00079 RefSeq:NP_846247.1 RefSeq:YP_020646.1
            RefSeq:YP_029969.1 ProteinModelPortal:Q81WH1 SMR:Q81WH1
            DNASU:1086728 EnsemblBacteria:EBBACT00000010618
            EnsemblBacteria:EBBACT00000015698 EnsemblBacteria:EBBACT00000019234
            GeneID:1086728 GeneID:2816204 GeneID:2852977 KEGG:ban:BA_4005
            KEGG:bar:GBAA_4005 KEGG:bat:BAS3718 OMA:IQIGVPR
            ProtClustDB:PRK12846 BioCyc:BANT260799:GJAJ-3776-MONOMER
            BioCyc:BANT261594:GJ7F-3893-MONOMER Uniprot:Q81WH1
        Length = 156

 Score = 125 (49.1 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 30/76 (39%), Positives = 41/76 (53%)

Query:    62 INPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARII 121
             INP   IL+ + +    EGC S   L  +V R   +++   +  GK     AEG  AR I
Sbjct:    73 INPS--ILEKRGEQVGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGLLARAI 130

Query:   122 QHEMDHLDGLLFTDSM 137
             QHE+DHL G+LFT  +
Sbjct:   131 QHEIDHLHGVLFTSKV 146

 Score = 55 (24.4 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query:     4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPD 38
             ++  M   M   D  GL+APQVG+ L++ +V   D
Sbjct:    31 LLKDMHETMLIADGVGLAAPQVGVSLQVAVVDIGD 65


>UNIPROTKB|Q9KN16 [details] [associations]
            symbol:def2 "Peptide deformylase 2" species:243277 "Vibrio
            cholerae O1 biovar El Tor str. N16961" [GO:0006464 "cellular
            protein modification process" evidence=ISS] [GO:0008463
            "formylmethionine deformylase activity" evidence=ISS]
            HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
            Pfam:PF01327 GO:GO:0005506 GO:GO:0006412 EMBL:AE003853
            GenomeReviews:AE003853_GR GO:GO:0006464 eggNOG:COG0242 KO:K01462
            GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
            PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
            ProtClustDB:PRK12846 GO:GO:0008463 PIR:C82494 RefSeq:NP_232550.1
            PDB:3QU1 PDBsum:3QU1 ProteinModelPortal:Q9KN16 SMR:Q9KN16
            DNASU:2612555 GeneID:2612555 KEGG:vch:VCA0150 PATRIC:20084873
            OMA:DDSNEGC EvolutionaryTrace:Q9KN16 Uniprot:Q9KN16
        Length = 168

 Score = 139 (54.0 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
 Identities = 32/81 (39%), Positives = 43/81 (53%)

Query:    59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
             +V INP  K++   +K    EGC S+    A V RY  V +  LD  GKP       + A
Sbjct:    71 LVLINP--KVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLA 128

Query:   119 RIIQHEMDHLDGLLFTDSMLP 139
              ++QHE+DHL G LF D + P
Sbjct:   129 IVMQHEIDHLSGNLFIDYLSP 149

 Score = 40 (19.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query:    19 GLSAPQVGLPLRLFIVAFPD 38
             GL+APQVG    + ++   D
Sbjct:    46 GLAAPQVGREEAIVVIDLSD 65


>TIGR_CMR|VC_A0150 [details] [associations]
            symbol:VC_A0150 "polypeptide deformylase" species:686
            "Vibrio cholerae O1 biovar El Tor" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0008463 "formylmethionine
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 GO:GO:0006412 EMBL:AE003853 GenomeReviews:AE003853_GR
            GO:GO:0006464 eggNOG:COG0242 KO:K01462 GO:GO:0042586
            Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
            SUPFAM:SSF56420 TIGRFAMs:TIGR00079 ProtClustDB:PRK12846
            GO:GO:0008463 PIR:C82494 RefSeq:NP_232550.1 PDB:3QU1 PDBsum:3QU1
            ProteinModelPortal:Q9KN16 SMR:Q9KN16 DNASU:2612555 GeneID:2612555
            KEGG:vch:VCA0150 PATRIC:20084873 OMA:DDSNEGC
            EvolutionaryTrace:Q9KN16 Uniprot:Q9KN16
        Length = 168

 Score = 139 (54.0 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
 Identities = 32/81 (39%), Positives = 43/81 (53%)

Query:    59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
             +V INP  K++   +K    EGC S+    A V RY  V +  LD  GKP       + A
Sbjct:    71 LVLINP--KVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLA 128

Query:   119 RIIQHEMDHLDGLLFTDSMLP 139
              ++QHE+DHL G LF D + P
Sbjct:   129 IVMQHEIDHLSGNLFIDYLSP 149

 Score = 40 (19.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query:    19 GLSAPQVGLPLRLFIVAFPD 38
             GL+APQVG    + ++   D
Sbjct:    46 GLAAPQVGREEAIVVIDLSD 65


>TIGR_CMR|ECH_0073 [details] [associations]
            symbol:ECH_0073 "peptide deformylase" species:205920
            "Ehrlichia chaffeensis str. Arkansas" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0042586 "peptide
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412
            eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
            InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
            TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 RefSeq:YP_506903.1 PDB:3OCA
            PDB:3U04 PDBsum:3OCA PDBsum:3U04 ProteinModelPortal:Q2GI30
            STRING:Q2GI30 GeneID:3927935 KEGG:ech:ECH_0073 PATRIC:20575709
            OMA:AEWHELE ProtClustDB:CLSK749063
            BioCyc:ECHA205920:GJNR-73-MONOMER EvolutionaryTrace:Q2GI30
            Uniprot:Q2GI30
        Length = 188

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 43/121 (35%), Positives = 69/121 (57%)

Query:    19 GLSAPQVGLPLRLFIVAFPDP-EESFS----EGDIKKFEMQAFPHMVWINPEMKILDY-K 72
             GL+A QVG+  R+ ++  P+  E+S      E  I+ +E+   P+ + INP  KI+D  +
Sbjct:    46 GLAAVQVGVHKRILVMNVPEEFEDSEDIENVEDKIEGYELYGGPYCI-INP--KIVDISQ 102

Query:    73 DKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLL 132
             +KV   EGC S+      + R +++ +  LD  G      A+GW AR +QHE+DHL+G +
Sbjct:   103 EKVKLKEGCLSVPGYFDYIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTV 162

Query:   133 F 133
             F
Sbjct:   163 F 163


>UNIPROTKB|Q9KVU3 [details] [associations]
            symbol:def1 "Peptide deformylase 1" species:243277 "Vibrio
            cholerae O1 biovar El Tor str. N16961" [GO:0006464 "cellular
            protein modification process" evidence=ISS] [GO:0008463
            "formylmethionine deformylase activity" evidence=ISS]
            HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
            Pfam:PF01327 GO:GO:0005506 GO:GO:0006412 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0006464 eggNOG:COG0242 KO:K01462
            GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
            PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
            ProtClustDB:PRK00150 OMA:EMDQYQE PIR:A82373 RefSeq:NP_229705.1
            PDB:3FWX PDBsum:3FWX ProteinModelPortal:Q9KVU3 SMR:Q9KVU3
            DNASU:2614445 GeneID:2614445 KEGG:vch:VC0046 PATRIC:20079140
            EvolutionaryTrace:Q9KVU3 GO:GO:0008463 Uniprot:Q9KVU3
        Length = 169

 Score = 138 (53.6 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 32/81 (39%), Positives = 46/81 (56%)

Query:    59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
             MV INPE  I++ + +    EGC S+   +A VPR  +V +  LD  G+   + A+   A
Sbjct:    71 MVLINPE--IIEKRGEDGIEEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFDADDLLA 128

Query:   119 RIIQHEMDHLDGLLFTDSMLP 139
               +QHE+DHL G LF D + P
Sbjct:   129 ICVQHELDHLAGKLFVDYLSP 149

 Score = 35 (17.4 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query:     4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIV 34
             I+  M   M   +  GL+A QV +  R+ ++
Sbjct:    31 IVDDMLETMYAEEGIGLAATQVDIHQRIVVI 61


>TIGR_CMR|VC_0046 [details] [associations]
            symbol:VC_0046 "polypeptide deformylase" species:686
            "Vibrio cholerae O1 biovar El Tor" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0008463 "formylmethionine
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0006464 eggNOG:COG0242 KO:K01462 GO:GO:0042586
            Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
            SUPFAM:SSF56420 TIGRFAMs:TIGR00079 ProtClustDB:PRK00150 OMA:EMDQYQE
            PIR:A82373 RefSeq:NP_229705.1 PDB:3FWX PDBsum:3FWX
            ProteinModelPortal:Q9KVU3 SMR:Q9KVU3 DNASU:2614445 GeneID:2614445
            KEGG:vch:VC0046 PATRIC:20079140 EvolutionaryTrace:Q9KVU3
            GO:GO:0008463 Uniprot:Q9KVU3
        Length = 169

 Score = 138 (53.6 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 32/81 (39%), Positives = 46/81 (56%)

Query:    59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
             MV INPE  I++ + +    EGC S+   +A VPR  +V +  LD  G+   + A+   A
Sbjct:    71 MVLINPE--IIEKRGEDGIEEGCLSVPGARALVPRAAEVTVKALDRNGQEYQFDADDLLA 128

Query:   119 RIIQHEMDHLDGLLFTDSMLP 139
               +QHE+DHL G LF D + P
Sbjct:   129 ICVQHELDHLAGKLFVDYLSP 149

 Score = 35 (17.4 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query:     4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIV 34
             I+  M   M   +  GL+A QV +  R+ ++
Sbjct:    31 IVDDMLETMYAEEGIGLAATQVDIHQRIVVI 61


>TIGR_CMR|CJE_0184 [details] [associations]
            symbol:CJE_0184 "peptide deformylase" species:195099
            "Campylobacter jejuni RM1221" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0042586 "peptide
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 GO:GO:0006412 EMBL:CP000025 GenomeReviews:CP000025_GR
            eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
            InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
            TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:PEQSHEI
            ProtClustDB:PRK00150 RefSeq:YP_178208.1 ProteinModelPortal:Q5HWX7
            SMR:Q5HWX7 STRING:Q5HWX7 GeneID:3230947 KEGG:cjr:CJE0184
            PATRIC:20042077 BioCyc:CJEJ195099:GJC0-189-MONOMER Uniprot:Q5HWX7
        Length = 175

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 44/119 (36%), Positives = 63/119 (52%)

Query:    19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
             GL+A QV +PLR+ +V        F E D +K E      +  INPE+  LD ++ +T  
Sbjct:    45 GLAAIQVDIPLRVLLVNI------FDENDEQKKE----DLLEIINPEIIPLD-EEMITCT 93

Query:    79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
             EGC S+     +V RY  + L   D  G+     A+G+ A  IQHE DHL+G LF + +
Sbjct:    94 EGCLSVPDFFEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKI 152


>TIGR_CMR|APH_1372 [details] [associations]
            symbol:APH_1372 "peptide deformylase" species:212042
            "Anaplasma phagocytophilum HZ" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0042586 "peptide
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 GO:GO:0006412 EMBL:CP000235 GenomeReviews:CP000235_GR
            KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
            PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
            HOGENOM:HOG000243509 RefSeq:YP_505871.1 STRING:Q2GID0
            GeneID:3930818 KEGG:aph:APH_1372 PATRIC:20951546 OMA:LEIIHYP
            ProtClustDB:CLSK747409 BioCyc:APHA212042:GHPM-1372-MONOMER
            Uniprot:Q2GID0
        Length = 187

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 44/118 (37%), Positives = 64/118 (54%)

Query:    19 GLSAPQVGLPLRLFIVAF-PDPEESFSE--GDIKKFEMQAFPHMVWINPEMKILDYKDKV 75
             GL+A QVG+  R+F++   P  EES SE   D   +     P MV INPE+ +    D V
Sbjct:    48 GLAAVQVGVHKRIFVIDLGPKTEES-SEIADDPDGYHSTCGP-MVVINPEI-VEKSVDLV 104

Query:    76 TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLF 133
             +  EGC S+   +  V R  ++ +   D  GK     A+G  +R +QHE+DHL+G +F
Sbjct:   105 SMEEGCLSVPDQRELVVRPERIVMQYTDLHGKRKILKAQGLLSRCLQHEIDHLNGTVF 162


>TIGR_CMR|NSE_0392 [details] [associations]
            symbol:NSE_0392 "peptide deformylase" species:222891
            "Neorickettsia sennetsu str. Miyayama" [GO:0006464 "cellular
            protein modification process" evidence=ISS] [GO:0042586 "peptide
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 GO:GO:0006412 EMBL:CP000237 GenomeReviews:CP000237_GR
            eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
            InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
            TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 RefSeq:YP_506280.1
            ProteinModelPortal:Q2GE16 STRING:Q2GE16 GeneID:3931718
            KEGG:nse:NSE_0392 PATRIC:22680845 OMA:KANGWLA
            ProtClustDB:CLSK2527811 BioCyc:NSEN222891:GHFU-416-MONOMER
            Uniprot:Q2GE16
        Length = 186

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 44/138 (31%), Positives = 69/138 (50%)

Query:     2 KIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEG-DIKKFEMQAFPHMV 60
             ++ +  M   M      GL+A QVG+  R+ +V  P  +E  S   +   ++    P+  
Sbjct:    29 RVFLDDMLETMYHCGGIGLAAVQVGVLERIIVVDVPVGKEWHSSPLNHVGYKSSGGPYY- 87

Query:    61 WINPEMKILDYKDK-VTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
             ++NPE  I+++    V A EGC SL     ++ R   V +  L+  G+     A GW AR
Sbjct:    88 FVNPE--IIEFSQNLVPADEGCLSLPEQHYEIIRPDAVVVKYLNYDGEECLLKANGWLAR 145

Query:   120 IIQHEMDHLDGLLFTDSM 137
              IQHEMDHL+G L+   +
Sbjct:   146 CIQHEMDHLNGRLYVSHL 163


>TIGR_CMR|ECH_0939 [details] [associations]
            symbol:ECH_0939 "putative polypeptide deformylase"
            species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006464
            "cellular protein modification process" evidence=ISS] [GO:0042586
            "peptide deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412
            eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
            InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
            HOGENOM:HOG000243509 RefSeq:YP_507728.1 ProteinModelPortal:Q2GFQ5
            STRING:Q2GFQ5 GeneID:3927713 KEGG:ech:ECH_0939 PATRIC:20577264
            OMA:ALANDMM ProtClustDB:CLSK749347
            BioCyc:ECHA205920:GJNR-942-MONOMER Uniprot:Q2GFQ5
        Length = 194

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 48/141 (34%), Positives = 68/141 (48%)

Query:     2 KIIIL--QMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPH- 58
             +II L   M  VM+     GLSA Q+G   R+FI+         ++ DIK        H 
Sbjct:    28 EIIALANDMMKVMEHSKTVGLSAVQLGNHSRMFIINMFSGLFDIAQ-DIKVLSGHHSLHG 86

Query:    59 --MVWINPEMKILDYK-DKVTALEGCASLKSLQA-KVPRYRKVQLTGLDETGKPDSWTAE 114
               M+ INPE  +L +  + V   EGC+S KS     + R + + L   D  G        
Sbjct:    87 KNMICINPE--VLSFSAETVDLFEGCSSAKSYGLINITRPKHMDLRYTDLLGNECIVRVY 144

Query:   115 GWAARIIQHEMDHLDGLLFTD 135
             GW +R IQHE+DHL+G+L  +
Sbjct:   145 GWLSRCIQHELDHLNGILLAN 165


>TIGR_CMR|GSU_3456 [details] [associations]
            symbol:GSU_3456 "polypeptide deformylase" species:243231
            "Geobacter sulfurreducens PCA" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0008463 "formylmethionine
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 GO:GO:0006412 EMBL:AE017180 GenomeReviews:AE017180_GR
            KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
            PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
            HOGENOM:HOG000243509 RefSeq:NP_954496.1 ProteinModelPortal:Q746R2
            GeneID:2686601 KEGG:gsu:GSU3456 PATRIC:22029771 OMA:SAICAPQ
            ProtClustDB:CLSK829292 BioCyc:GSUL243231:GH27-3425-MONOMER
            Uniprot:Q746R2
        Length = 169

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 42/121 (34%), Positives = 62/121 (51%)

Query:    19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
             G++APQ+G+ LR+ ++   D   S   G      +     ++ +NPE  I+D        
Sbjct:    47 GVAAPQIGVTLRVCVI---DVSGS-RHGKDNNHGL-----LLMVNPE--IVDRSGNAVMR 95

Query:    79 EGCASLKSLQAKVPRYRKVQLTGLDET-GKPDSWTAEGWAARIIQHEMDHLDGLLFTDSM 137
             EGC S+      V R  +V++  LD   G     TA G+ A  IQHEMDHLDG+LF D +
Sbjct:    96 EGCMSVPDYTGDVERSTEVRVRFLDGADGSEREITASGFEAVAIQHEMDHLDGILFLDRI 155

Query:   138 L 138
             +
Sbjct:   156 V 156


>TIGR_CMR|SPO_3219 [details] [associations]
            symbol:SPO_3219 "peptide deformylase" species:246200
            "Ruegeria pomeroyi DSS-3" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0042586 "peptide
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
            KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
            PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
            HOGENOM:HOG000243509 RefSeq:YP_168422.1 ProteinModelPortal:Q5LNI5
            GeneID:3193782 KEGG:sil:SPO3219 PATRIC:23379885 OMA:HERVVVK
            ProtClustDB:CLSK934098 Uniprot:Q5LNI5
        Length = 172

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 43/121 (35%), Positives = 61/121 (50%)

Query:    19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
             GL+APQ+G+  RL ++     EES     +  F     P +V  + E  I +        
Sbjct:    45 GLAAPQIGVLDRLIVLDCVK-EESAPARPLVMFN----PRVVAASDETNIYE-------- 91

Query:    79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
             EGC S+    A+V R + V +  +D  GK  S T +G  A  +QHE+DHLDG LF D + 
Sbjct:    92 EGCLSIPEQYAEVTRPKVVDVEWIDRDGKLQSETFDGLWATCVQHEIDHLDGKLFIDYLK 151

Query:   139 P 139
             P
Sbjct:   152 P 152


>TIGR_CMR|SO_2530 [details] [associations]
            symbol:SO_2530 "polypeptide deformylase" species:211586
            "Shewanella oneidensis MR-1" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0008463 "formylmethionine
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 GO:GO:0006412 EMBL:AE014299 GenomeReviews:AE014299_GR
            eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
            InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
            TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 ProtClustDB:PRK12846
            RefSeq:NP_718116.1 ProteinModelPortal:Q8EE60 SMR:Q8EE60
            GeneID:1170239 KEGG:son:SO_2530 PATRIC:23524691 OMA:NEGCISV
            Uniprot:Q8EE60
        Length = 163

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 29/79 (36%), Positives = 47/79 (59%)

Query:    59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
             +V +NPE  I++   +    EGC S+   +AKV R+ KV++T LD  GK      + + A
Sbjct:    71 LVLVNPE--IVEKSGEYVGEEGCLSIPGYRAKVTRFEKVKVTALDRQGKAIEIETDDFLA 128

Query:   119 RIIQHEMDHLDGLLFTDSM 137
              ++QHE+DHL G +F + +
Sbjct:   129 IVLQHEIDHLHGKVFIEHL 147


>DICTYBASE|DDB_G0288157 [details] [associations]
            symbol:DDB_G0288157 "Peptide deformylase,
            mitochondrial" species:44689 "Dictyostelium discoideum" [GO:0042586
            "peptide deformylase activity" evidence=IEA] [GO:0005506 "iron ion
            binding" evidence=IEA] HAMAP:MF_00163 InterPro:IPR000181
            PRINTS:PR01576 dictyBase:DDB_G0288157 Pfam:PF01327 GO:GO:0005506
            EMBL:AAFI02000109 eggNOG:COG0242 GO:GO:0042586 Gene3D:3.90.45.10
            InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
            RefSeq:XP_636872.1 ProteinModelPortal:Q54JC1 STRING:Q54JC1
            EnsemblProtists:DDB0187806 GeneID:8626484 KEGG:ddi:DDB_G0288157
            InParanoid:Q54JC1 OMA:DITGKER Uniprot:Q54JC1
        Length = 243

 Score = 113 (44.8 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
 Identities = 26/61 (42%), Positives = 35/61 (57%)

Query:    75 VTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFT 134
             +T LE C S+ ++ A V R ++  +T LD TGK     A+G  A   QHE DHL G +F 
Sbjct:   147 ITMLESCLSVPNIFAHVQRSKRCIITFLDITGKERIIEADGILAACFQHEYDHLLGKIFI 206

Query:   135 D 135
             D
Sbjct:   207 D 207

 Score = 68 (29.0 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
 Identities = 19/67 (28%), Positives = 34/67 (50%)

Query:     4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
             ++ +M   MK     G++APQ+G+  +LF++  P       EG         FP   + N
Sbjct:    39 LLEKMYKEMKDCTGTGIAAPQIGVNKQLFLLELPS-----QEG----LNCPNFPLTAFFN 89

Query:    64 PEMKILD 70
             P++K++D
Sbjct:    90 PKIKLID 96


>TIGR_CMR|GSU_0129 [details] [associations]
            symbol:GSU_0129 "polypeptide deformylase" species:243231
            "Geobacter sulfurreducens PCA" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0008463 "formylmethionine
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 GO:GO:0006412 EMBL:AE017180 GenomeReviews:AE017180_GR
            KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
            PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
            HOGENOM:HOG000243509 RefSeq:NP_951191.2 GeneID:2687913
            KEGG:gsu:GSU0129 PATRIC:22023006 ProtClustDB:CLSK827656
            BioCyc:GSUL243231:GH27-140-MONOMER Uniprot:Q74GW5
        Length = 167

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 45/141 (31%), Positives = 70/141 (49%)

Query:     4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
             ++  M   M      GL+APQ+G+  R+ ++         S+ D ++ E+     +V IN
Sbjct:    30 LVRDMAETMYDAQGVGLAAPQIGVSQRVIVI-------DVSQRD-ERPEL-----IVCIN 76

Query:    64 PEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQH 123
             P   I+  + +    EGC S+    A V R+ +V +  L+  G+     AEG  A   QH
Sbjct:    77 PV--IIHGEGESYEEEGCLSVPKYSANVHRHERVVVKSLNLEGEEVVHRAEGLLAIAFQH 134

Query:   124 EMDHLDGLLFTD--SMLPKSL 142
             E+DHLDG+LF D  S L K +
Sbjct:   135 EIDHLDGVLFVDHLSALKKEM 155


>GENEDB_PFALCIPARUM|PFI0380c [details] [associations]
            symbol:PFI0380c "formylmethionine deformylase,
            putative" species:5833 "Plasmodium falciparum" [GO:0020011
            "apicoplast" evidence=IDA] HAMAP:MF_00163 InterPro:IPR000181
            PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327 GO:GO:0005506
            GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
            PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
            HOGENOM:HOG000243509 OMA:PEQSHEI GO:GO:0008463 GO:GO:0020011
            EMBL:AL844508 RefSeq:XP_001351951.1 PDB:1JYM PDB:1RL4 PDB:1RQC
            PDBsum:1JYM PDBsum:1RL4 PDBsum:1RQC ProteinModelPortal:Q8I372
            SMR:Q8I372 EnsemblProtists:PFI0380c:mRNA GeneID:813356
            KEGG:pfa:PFI0380c EuPathDB:PlasmoDB:PF3D7_0907900 KO:K01450
            ProtClustDB:CLSZ2433563 EvolutionaryTrace:Q8I372 Uniprot:Q8I372
        Length = 241

 Score = 135 (52.6 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 42/137 (30%), Positives = 67/137 (48%)

Query:     1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
             +K ++ +M ++M      GLSAPQV +  R+ +        +  E   +K E +     +
Sbjct:    89 LKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVW------NALYEK--RKEENER----I 136

Query:    61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
             +INP + +     K+  +EGC S   ++ KV R   V ++  D  G       +G  +RI
Sbjct:   137 FINPSI-VEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRI 195

Query:   121 IQHEMDHLDGLLFTDSM 137
              QHE DHL+G LF D M
Sbjct:   196 FQHEFDHLNGTLFIDKM 212


>UNIPROTKB|Q8I372 [details] [associations]
            symbol:PFI0380c "Formylmethionine deformylase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
            evidence=IDA] HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749
            PRINTS:PR01576 Pfam:PF01327 GO:GO:0005506 GO:GO:0042586
            Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
            SUPFAM:SSF56420 TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:PEQSHEI
            GO:GO:0008463 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001351951.1
            PDB:1JYM PDB:1RL4 PDB:1RQC PDBsum:1JYM PDBsum:1RL4 PDBsum:1RQC
            ProteinModelPortal:Q8I372 SMR:Q8I372 EnsemblProtists:PFI0380c:mRNA
            GeneID:813356 KEGG:pfa:PFI0380c EuPathDB:PlasmoDB:PF3D7_0907900
            KO:K01450 ProtClustDB:CLSZ2433563 EvolutionaryTrace:Q8I372
            Uniprot:Q8I372
        Length = 241

 Score = 135 (52.6 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 42/137 (30%), Positives = 67/137 (48%)

Query:     1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
             +K ++ +M ++M      GLSAPQV +  R+ +        +  E   +K E +     +
Sbjct:    89 LKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVW------NALYEK--RKEENER----I 136

Query:    61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
             +INP + +     K+  +EGC S   ++ KV R   V ++  D  G       +G  +RI
Sbjct:   137 FINPSI-VEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRI 195

Query:   121 IQHEMDHLDGLLFTDSM 137
              QHE DHL+G LF D M
Sbjct:   196 FQHEFDHLNGTLFIDKM 212


>UNIPROTKB|P96275 [details] [associations]
            symbol:def "Peptide deformylase" species:1773
            "Mycobacterium tuberculosis" [GO:0035601 "protein deacylation"
            evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0042586
            "peptide deformylase activity" evidence=IDA] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
            GenomeReviews:AL123456_GR GO:GO:0005506 GO:GO:0006412 EMBL:BX842573
            GO:GO:0035601 eggNOG:COG0242 HOGENOM:HOG000243508 KO:K01462
            GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
            PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
            ProtClustDB:PRK00150 PIR:C70631 RefSeq:NP_214943.1
            RefSeq:NP_334853.1 RefSeq:YP_006513755.1 PDB:3E3U PDBsum:3E3U
            ProteinModelPortal:P96275 SMR:P96275 PRIDE:P96275
            EnsemblBacteria:EBMYCT00000003426 EnsemblBacteria:EBMYCT00000072922
            GeneID:13318296 GeneID:886366 GeneID:923753 KEGG:mtc:MT0444
            KEGG:mtu:Rv0429c KEGG:mtv:RVBD_0429c PATRIC:18122688
            TubercuList:Rv0429c OMA:LIGRWKR BindingDB:P96275 ChEMBL:CHEMBL5765
            EvolutionaryTrace:P96275 Uniprot:P96275
        Length = 197

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 43/139 (30%), Positives = 66/139 (47%)

Query:     4 IILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWIN 63
             +I  M + M   +  GL+A Q+G  LRLF+       +  ++       M A    V IN
Sbjct:    36 LIATMYDTMDAANGVGLAANQIGCSLRLFVY------DCAADR-----AMTARRRGVVIN 84

Query:    64 PEMKILDYKDKV----TALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
             P ++  +  + +    T  EGC S+        R +  ++TGLD  G P S    G  AR
Sbjct:    85 PVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFAR 144

Query:   120 IIQHEMDHLDGLLFTDSML 138
             ++QHE  HLDG L+ D ++
Sbjct:   145 MLQHETGHLDGFLYLDRLI 163


>TIGR_CMR|CBU_0993 [details] [associations]
            symbol:CBU_0993 "peptide deformylase" species:227377
            "Coxiella burnetii RSA 493" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0042586 "peptide
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 GO:GO:0006412 EMBL:AE016828 GenomeReviews:AE016828_GR
            eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
            InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
            TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 RefSeq:NP_820000.1
            ProteinModelPortal:Q83CV9 PRIDE:Q83CV9 GeneID:1208889
            KEGG:cbu:CBU_0993 PATRIC:17930707 OMA:WATCAQH ProtClustDB:PRK00150
            BioCyc:CBUR227377:GJ7S-984-MONOMER Uniprot:Q83CV9
        Length = 170

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 29/77 (37%), Positives = 46/77 (59%)

Query:    62 INPEMKILDYKDKVTALEGCASLKS-LQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
             +N E  I++   + T  EGC S+      KV R  K+++   D  GKP  + A+G+ A+ 
Sbjct:    75 VNAE--IIERSGEHTEEEGCMSVGGGTFEKVTRAAKIKVRARDRYGKPVEFEADGFMAKC 132

Query:   121 IQHEMDHLDGLLFTDSM 137
             IQHE+DHL+G++F D +
Sbjct:   133 IQHELDHLNGIIFLDRL 149


>TIGR_CMR|CPS_0020 [details] [associations]
            symbol:CPS_0020 "polypeptide deformylase" species:167879
            "Colwellia psychrerythraea 34H" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0042586 "peptide
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 GO:GO:0006412 EMBL:CP000083 GenomeReviews:CP000083_GR
            eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
            InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
            TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:EMDQYQE
            RefSeq:YP_266802.1 ProteinModelPortal:Q48AS8 SMR:Q48AS8
            STRING:Q48AS8 GeneID:3519823 KEGG:cps:CPS_0020 PATRIC:21463475
            BioCyc:CPSY167879:GI48-137-MONOMER Uniprot:Q48AS8
        Length = 171

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 30/81 (37%), Positives = 43/81 (53%)

Query:    59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
             +++INPE+     +  +   EGC S+    AKV R+    +  LD  GK  S  A    +
Sbjct:    71 IIFINPEIIATSNETSINE-EGCLSVPGTYAKVDRHDACTVKALDRHGKEFSLNATELQS 129

Query:   119 RIIQHEMDHLDGLLFTDSMLP 139
               IQHE+DHL G+LF D + P
Sbjct:   130 ICIQHELDHLKGVLFVDYLSP 150


>TIGR_CMR|SO_0032 [details] [associations]
            symbol:SO_0032 "polypeptide deformylase" species:211586
            "Shewanella oneidensis MR-1" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0008463 "formylmethionine
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 GO:GO:0006412 EMBL:AE014299 GenomeReviews:AE014299_GR
            eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
            InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
            TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 ProtClustDB:PRK00150
            RefSeq:NP_715674.1 ProteinModelPortal:Q8EKQ8 SMR:Q8EKQ8
            GeneID:1167930 KEGG:son:SO_0032 PATRIC:23519755 OMA:EMDQYQE
            Uniprot:Q8EKQ8
        Length = 168

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 34/80 (42%), Positives = 42/80 (52%)

Query:    60 VWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAAR 119
             V+INPE+ I    D     EGC S+  + AKV R   V +  LD  G   +  A+   A 
Sbjct:    72 VFINPEI-IASSGDFCNE-EGCLSVPGIYAKVDRAEFVTVKALDRHGNEFTVEADDLFAI 129

Query:   120 IIQHEMDHLDGLLFTDSMLP 139
              IQHEMDHL G LF D + P
Sbjct:   130 CIQHEMDHLKGKLFVDYLSP 149


>TIGR_CMR|BA_4187 [details] [associations]
            symbol:BA_4187 "polypeptide deformylase" species:198094
            "Bacillus anthracis str. Ames" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0008463 "formylmethionine
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
            GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0006412 eggNOG:COG0242 KO:K01462
            OMA:LTSGEGC GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
            PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
            ProtClustDB:PRK00150 RefSeq:NP_846423.1 RefSeq:YP_020831.1
            RefSeq:YP_030134.1 ProteinModelPortal:Q81MQ9 SMR:Q81MQ9
            DNASU:1088919 EnsemblBacteria:EBBACT00000010470
            EnsemblBacteria:EBBACT00000016119 EnsemblBacteria:EBBACT00000020183
            GeneID:1088919 GeneID:2818161 GeneID:2850259 KEGG:ban:BA_4187
            KEGG:bar:GBAA_4187 KEGG:bat:BAS3884 HOGENOM:HOG000243507
            BioCyc:BANT260799:GJAJ-3941-MONOMER
            BioCyc:BANT261594:GJ7F-4072-MONOMER Uniprot:Q81MQ9
        Length = 184

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 36/121 (29%), Positives = 63/121 (52%)

Query:    19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
             GL+APQ+G+  ++  V   D     ++G +       + H ++ NP  KI+ +  + T L
Sbjct:    60 GLAAPQIGISKKMIAVHVTD-----TDGTL-------YSHALF-NP--KIISHSVERTYL 104

Query:    79 ---EGCASL-KSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFT 134
                EGC S+ + +   VPRY ++ +      G+      +G  A + QHE+DHL+G++F 
Sbjct:   105 QSGEGCLSVDREVPGYVPRYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFY 164

Query:   135 D 135
             D
Sbjct:   165 D 165


>TIGR_CMR|CPS_0407 [details] [associations]
            symbol:CPS_0407 "polypeptide deformylase" species:167879
            "Colwellia psychrerythraea 34H" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0042586 "peptide
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 GO:GO:0006412 EMBL:CP000083 GenomeReviews:CP000083_GR
            eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
            InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
            TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 ProtClustDB:PRK12846
            RefSeq:YP_267165.1 ProteinModelPortal:Q489U9 SMR:Q489U9
            STRING:Q489U9 GeneID:3521653 KEGG:cps:CPS_0407 PATRIC:21464175
            OMA:DVERFTH BioCyc:CPSY167879:GI48-502-MONOMER Uniprot:Q489U9
        Length = 166

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 29/81 (35%), Positives = 43/81 (53%)

Query:    59 MVWINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAA 118
             +V +NP   I   +      EGC S+    A V R+  V +  LD  GK  + T++ + A
Sbjct:    71 LVLVNPV--ITHGEATAKGQEGCLSIPGYYADVERFTHVTVEALDRNGKELTITSDEFLA 128

Query:   119 RIIQHEMDHLDGLLFTDSMLP 139
              ++QHE+DHL G LF D + P
Sbjct:   129 IVMQHEIDHLKGKLFIDYLSP 149


>TIGR_CMR|SO_1062 [details] [associations]
            symbol:SO_1062 "polypeptide deformylase" species:211586
            "Shewanella oneidensis MR-1" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0008463 "formylmethionine
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 GO:GO:0006412 EMBL:AE014299 GenomeReviews:AE014299_GR
            eggNOG:COG0242 HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586
            Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
            SUPFAM:SSF56420 TIGRFAMs:TIGR00079 RefSeq:NP_716689.1
            ProteinModelPortal:Q8EHZ2 GeneID:1168899 KEGG:son:SO_1062
            PATRIC:23521771 OMA:ATETEYR ProtClustDB:CLSK906069 Uniprot:Q8EHZ2
        Length = 181

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 38/123 (30%), Positives = 62/123 (50%)

Query:    19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
             G++APQV  PL LFI+A   P E + +  + +      P +V +NP++ +L         
Sbjct:    56 GIAAPQVHSPLALFIMA-SRPNERYPDAPLME------P-LVVVNPQI-VLRSLQLEKGE 106

Query:    79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGL-LFTDSM 137
             EGC S+   +  + R + + +   +  G+       G+ ARI QHE DHL G+ L   S 
Sbjct:   107 EGCLSVPGQRFTIWRPQTIVVRYQNLAGQWQHSELTGFIARIFQHEFDHLQGITLLERSQ 166

Query:   138 LPK 140
             +P+
Sbjct:   167 MPE 169


>TIGR_CMR|SPO_3217 [details] [associations]
            symbol:SPO_3217 "peptide deformylase" species:246200
            "Ruegeria pomeroyi DSS-3" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0008463 "formylmethionine
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
            KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
            PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
            HOGENOM:HOG000243509 RefSeq:YP_168420.1 ProteinModelPortal:Q5LNI7
            GeneID:3194969 KEGG:sil:SPO3217 PATRIC:23379881 OMA:TVIQHEI
            ProtClustDB:CLSK934097 Uniprot:Q5LNI7
        Length = 165

 Score = 114 (45.2 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 39/137 (28%), Positives = 68/137 (49%)

Query:     1 MKIIILQMKNVMKRFDLFGLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMV 60
             ++ I   M + M+     GL+APQ+G+ LRL +V     + S   G   +    A P ++
Sbjct:    28 IRAIWTDMIDTMEAMPGVGLAAPQIGVMLRLAVV-----DGSSERGRAVRL---ANPEIL 79

Query:    61 WINPEMKILDYKDKVTALEGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARI 120
               + E++  D        E   +L  + AK+ R R V +  L+E G+ D     G  A  
Sbjct:    80 HASIELREHD--------EASPNLPGVSAKLKRPRAVTVRFLNEQGQVDRRDFVGIEATS 131

Query:   121 IQHEMDHLDGLLFTDSM 137
             +QH++DHL+G ++ D++
Sbjct:   132 VQHQIDHLNGRMYFDNL 148


>TIGR_CMR|SPO_3218 [details] [associations]
            symbol:SPO_3218 "peptide deformylase" species:246200
            "Ruegeria pomeroyi DSS-3" [GO:0006464 "cellular protein
            modification process" evidence=ISS] [GO:0042586 "peptide
            deformylase activity" evidence=ISS] HAMAP:MF_00163
            InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
            GO:GO:0005506 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
            KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
            PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
            HOGENOM:HOG000243509 RefSeq:YP_168421.1 ProteinModelPortal:Q5LNI6
            GeneID:3195601 KEGG:sil:SPO3218 PATRIC:23379883 OMA:KLIRPAK
            ProtClustDB:CLSK751629 Uniprot:Q5LNI6
        Length = 165

 Score = 113 (44.8 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 38/123 (30%), Positives = 58/123 (47%)

Query:    19 GLSAPQVGLPLRLFIVAFPDPEESFSEGDIKKFEMQAFPHMVWINPEMKILDYKDKVTAL 78
             GL+APQVG+  R F++     +  + EG          P M  INP +   + +  V   
Sbjct:    44 GLAAPQVGVMQRFFVM-----DVGWKEGPPS-------P-MAMINPVIMAAE-RVPVEME 89

Query:    79 EGCASLKSLQAKVPRYRKVQLTGLDETGKPDSWTAEGWAARIIQHEMDHLDGLLFTDSML 138
             E C S+  L   V R + V +      G       +G+ AR IQHE DHL+G++  D + 
Sbjct:    90 EVCLSIPGLSVPVTRPKAVTVQWTAPEGDIHMADFDGFEARCIQHEFDHLNGVVTLDHLD 149

Query:   139 PKS 141
             P++
Sbjct:   150 PRA 152


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.139   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      164       164   0.00088  107 3  11 22  0.49    31
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  41
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  166 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.27u 0.08s 16.35t   Elapsed:  00:00:00
  Total cpu time:  16.27u 0.08s 16.35t   Elapsed:  00:00:00
  Start:  Thu Aug 15 14:27:53 2013   End:  Thu Aug 15 14:27:53 2013

the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with LOC100517402 LOC100517402 LOC100517402 Uncharacterized protein	protein from Sus scrofa	1.3e-29
BLAST match view associations BLAST with Pdf Pdf Pdf peptide deformylase (mitochondrial)	gene from Rattus norvegicus	1.2e-28
BLAST match view associations BLAST with CG31278 CG31278 CG31278	protein from Drosophila melanogaster	1.5e-28
BLAST match view associations BLAST with PDF PDF PDF Uncharacterized protein	protein from Bos taurus	1.0e-27
BLAST match view associations BLAST with PDF PDF PDF Uncharacterized protein	protein from Canis lupus familiaris	1.7e-27
BLAST match view associations BLAST with pdf pdf pdf peptide deformylase (mitochondrial)	gene_product from Danio rerio	2.2e-27
BLAST match view associations BLAST with CG31373 CG31373 CG31373	protein from Drosophila melanogaster	4.0e-26
BLAST match view associations BLAST with PDF PDF PDF Peptide deformylase, mitochondrial	protein from Homo sapiens	2.9e-25
BLAST match view associations BLAST with PDF1A PDF1A PDF1A peptide deformylase 1A	protein from Arabidopsis thaliana	2.6e-22
BLAST match view associations BLAST with DET_0760 DET_0760 DET_0760 peptide deformylase	protein from Dehalococcoides ethenogenes 195	1.2e-14
BLAST match view associations BLAST with PDF1B PDF1B PDF1B AT5G14660	protein from Arabidopsis thaliana	3.0e-14
BLAST match view associations BLAST with def def def	protein from Escherichia coli K-12	3.0e-14
BLAST match view associations BLAST with CHY_1484 CHY_1484 CHY_1484 peptide deformylase	protein from Carboxydothermus hydrogenoformans Z-2901	3.0e-14
BLAST match view associations BLAST with APH_1012 APH_1012 APH_1012 putative polypeptide deformylase	protein from Anaplasma phagocytophilum str. HZ	7.1e-13
BLAST match view associations BLAST with BA_4005 BA_4005 BA_4005 polypeptide deformylase	protein from Bacillus anthracis str. Ames	1.4e-12
BLAST match view associations BLAST with def2 def2 def2 Peptide deformylase 2	protein from Vibrio cholerae O1 biovar El Tor str. N16961	1.8e-12
BLAST match view associations BLAST with VC_A0150 VC_A0150 VC_A0150 polypeptide deformylase	protein from Vibrio cholerae O1 biovar El Tor	1.8e-12
BLAST match view associations BLAST with ECH_0073 ECH_0073 ECH_0073 peptide deformylase	protein from Ehrlichia chaffeensis str. Arkansas	2.4e-12
BLAST match view associations BLAST with def1 def1 def1 Peptide deformylase 1	protein from Vibrio cholerae O1 biovar El Tor str. N16961	7.4e-12
BLAST match view associations BLAST with VC_0046 VC_0046 VC_0046 polypeptide deformylase	protein from Vibrio cholerae O1 biovar El Tor	7.4e-12
BLAST match view associations BLAST with CJE_0184 CJE_0184 CJE_0184 peptide deformylase	protein from Campylobacter jejuni RM1221	5.8e-11
BLAST match view associations BLAST with APH_1372 APH_1372 APH_1372 peptide deformylase	protein from Anaplasma phagocytophilum str. HZ	1.2e-10
BLAST match view associations BLAST with NSE_0392 NSE_0392 NSE_0392 peptide deformylase	protein from Neorickettsia sennetsu str. Miyayama	1.2e-10
BLAST match view associations BLAST with ECH_0939 ECH_0939 ECH_0939 putative polypeptide deformylase	protein from Ehrlichia chaffeensis str. Arkansas	1.5e-10
BLAST match view associations BLAST with GSU_3456 GSU_3456 GSU_3456 polypeptide deformylase	protein from Geobacter sulfurreducens PCA	1.5e-10
BLAST match view associations BLAST with SPO_3219 SPO_3219 SPO_3219 peptide deformylase	protein from Ruegeria pomeroyi DSS-3	3.2e-10
BLAST match view associations BLAST with SO_2530 SO_2530 SO_2530 polypeptide deformylase	protein from Shewanella oneidensis MR-1	5.2e-10
BLAST match view associations BLAST with DDB_G0288157 DDB_G0288157 DDB_G0288157 Peptide deformylase, mitochondrial	gene from Dictyostelium discoideum	6.6e-10
BLAST match view associations BLAST with GSU_0129 GSU_0129 GSU_0129 polypeptide deformylase	protein from Geobacter sulfurreducens PCA	3.6e-09
BLAST match view associations BLAST with PFI0380c PFI0380c PFI0380c formylmethionine deformylase, putative	gene from Plasmodium falciparum	6.3e-09
BLAST match view associations BLAST with PFI0380c PFI0380c PFI0380c Formylmethionine deformylase, putative	protein from Plasmodium falciparum 3D7	6.3e-09
BLAST match view associations BLAST with def def def Peptide deformylase	protein from Mycobacterium tuberculosis	7.6e-09
BLAST match view associations BLAST with CBU_0993 CBU_0993 CBU_0993 peptide deformylase	protein from Coxiella burnetii RSA 493	7.6e-09
BLAST match view associations BLAST with CPS_0020 CPS_0020 CPS_0020 polypeptide deformylase	protein from Colwellia psychrerythraea 34H	1.2e-08
BLAST match view associations BLAST with SO_0032 SO_0032 SO_0032 polypeptide deformylase	protein from Shewanella oneidensis MR-1	3.3e-08
BLAST match view associations BLAST with BA_4187 BA_4187 BA_4187 polypeptide deformylase	protein from Bacillus anthracis str. Ames	6.8e-08
BLAST match view associations BLAST with CPS_0407 CPS_0407 CPS_0407 polypeptide deformylase	protein from Colwellia psychrerythraea 34H	6.8e-08
BLAST match view associations BLAST with SO_1062 SO_1062 SO_1062 polypeptide deformylase	protein from Shewanella oneidensis MR-1	8.7e-08
BLAST match view associations BLAST with SPO_3217 SPO_3217 SPO_3217 peptide deformylase	protein from Ruegeria pomeroyi DSS-3	1.7e-06
BLAST match view associations BLAST with SPO_3218 SPO_3218 SPO_3218 peptide deformylase	protein from Ruegeria pomeroyi DSS-3	2.6e-06