BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14393
         (114 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Q7L|A Chain A, Zn-binding Domain Of The T347g Mutant Of Human
           Aminoacylase- I
 pdb|1Q7L|C Chain C, Zn-binding Domain Of The T347g Mutant Of Human
           Aminoacylase- I
          Length = 198

 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 36/53 (67%)

Query: 3   DEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKI 55
           DEE+GG QGM LFV    F  +  G ALDEGIA+PT+ F +F  ER+ W +++
Sbjct: 146 DEEVGGHQGMELFVQRPEFHALRAGFALDEGIANPTDAFTVFYSERSPWWVRV 198


>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
 pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
 pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
          Length = 444

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 29  ALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHG-SLLHENTAAEKVN 77
           AL E +  P +   LF G+RT W+  I   G PG G S L +  A E  N
Sbjct: 145 ALKEAVILPIKFPHLFTGKRTPWR-GILLFGPPGTGKSYLAKAVATEANN 193


>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
          Length = 322

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 29 ALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHG-SLLHENTAAEKVN 77
          AL E +  P +   LF G+RT W+  I   G PG G S L +  A E  N
Sbjct: 23 ALKEAVILPIKFPHLFTGKRTPWR-GILLFGPPGTGKSYLAKAVATEANN 71


>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
           Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
           Aeruginosa
          Length = 342

 Score = 27.3 bits (59), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 49  TIWQMKIHCPGTPGHGSLLHENTAAEKVNYIMNKF 83
           + + M  H  G PGH  L +++  + K +Y++ K+
Sbjct: 126 SAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKW 160


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,824,838
Number of Sequences: 62578
Number of extensions: 92446
Number of successful extensions: 162
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 4
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)