Query psy14393
Match_columns 114
No_of_seqs 145 out of 1017
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 18:42:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2275|consensus 99.9 6.3E-26 1.4E-30 180.6 10.8 114 1-114 160-273 (420)
2 TIGR01880 Ac-peptdase-euk N-ac 99.8 8.5E-18 1.8E-22 133.0 10.7 113 1-113 143-255 (400)
3 PRK08737 acetylornithine deace 99.6 2.7E-14 5.9E-19 112.7 9.6 79 1-87 126-206 (364)
4 PRK13013 succinyl-diaminopimel 99.5 3.5E-14 7.6E-19 112.9 9.6 84 1-87 154-238 (427)
5 PRK09133 hypothetical protein; 99.5 4.3E-14 9.3E-19 114.4 7.9 84 1-86 172-262 (472)
6 PRK06915 acetylornithine deace 99.5 9.3E-14 2E-18 110.6 9.6 81 1-90 165-246 (422)
7 PRK05111 acetylornithine deace 99.5 1.3E-13 2.9E-18 108.1 9.4 82 1-90 140-222 (383)
8 TIGR01910 DapE-ArgE acetylorni 99.5 1.2E-13 2.7E-18 108.3 8.8 84 1-90 136-220 (375)
9 PRK04443 acetyl-lysine deacety 99.5 8.2E-14 1.8E-18 108.7 7.6 79 1-88 119-197 (348)
10 PRK08588 succinyl-diaminopimel 99.5 1E-13 2.3E-18 108.7 7.7 81 1-88 131-212 (377)
11 PRK07522 acetylornithine deace 99.5 3.4E-13 7.3E-18 105.8 9.6 84 1-89 133-217 (385)
12 TIGR01892 AcOrn-deacetyl acety 99.4 6.2E-13 1.3E-17 103.3 9.6 81 1-89 127-208 (364)
13 PRK00466 acetyl-lysine deacety 99.4 3.7E-13 7.9E-18 104.9 7.9 77 1-86 119-195 (346)
14 PRK13009 succinyl-diaminopimel 99.4 3E-13 6.4E-18 105.8 6.3 85 1-88 130-219 (375)
15 PRK07906 hypothetical protein; 99.4 5.8E-13 1.3E-17 106.3 7.9 84 1-86 136-227 (426)
16 TIGR03320 ygeY M20/DapE family 99.4 8.3E-13 1.8E-17 104.5 8.4 81 1-88 139-220 (395)
17 PRK08652 acetylornithine deace 99.4 8.8E-13 1.9E-17 101.9 8.2 79 1-89 116-195 (347)
18 PRK06446 hypothetical protein; 99.4 6E-13 1.3E-17 106.9 7.2 82 1-86 133-220 (436)
19 TIGR01900 dapE-gram_pos succin 99.4 1E-12 2.2E-17 103.8 7.6 83 1-88 136-220 (373)
20 TIGR03526 selenium_YgeY putati 99.4 1.6E-12 3.5E-17 103.0 8.5 81 1-88 139-220 (395)
21 TIGR01246 dapE_proteo succinyl 99.4 9.8E-13 2.1E-17 102.9 7.2 85 1-88 127-216 (370)
22 PRK13983 diaminopimelate amino 99.4 2.2E-12 4.7E-17 101.4 9.1 82 1-85 148-232 (400)
23 PRK08651 succinyl-diaminopimel 99.4 2.7E-12 5.9E-17 101.0 8.5 81 1-88 142-223 (394)
24 PRK13007 succinyl-diaminopimel 99.4 2.5E-12 5.4E-17 99.8 7.9 82 1-88 122-206 (352)
25 PRK06837 acetylornithine deace 99.3 5.4E-12 1.2E-16 101.1 9.4 81 1-90 169-250 (427)
26 PRK08262 hypothetical protein; 99.3 6.3E-12 1.4E-16 102.2 9.9 83 1-86 185-277 (486)
27 PRK09290 allantoate amidohydro 99.3 1.8E-12 3.8E-17 103.4 6.0 48 41-88 206-256 (413)
28 TIGR01891 amidohydrolases amid 99.3 1.6E-12 3.4E-17 101.9 5.5 83 1-87 121-208 (363)
29 PRK13004 peptidase; Reviewed 99.3 4.4E-12 9.5E-17 100.6 7.9 81 1-88 141-222 (399)
30 PRK07473 carboxypeptidase; Pro 99.3 4.6E-12 9.9E-17 100.3 7.7 80 1-87 143-225 (376)
31 PRK08201 hypothetical protein; 99.3 8.8E-12 1.9E-16 100.5 6.6 80 1-85 151-238 (456)
32 TIGR01902 dapE-lys-deAc N-acet 99.2 1.9E-11 4.2E-16 94.7 7.4 73 1-84 109-181 (336)
33 PRK12892 allantoate amidohydro 99.2 2.1E-11 4.6E-16 96.7 7.4 47 41-87 206-255 (412)
34 PLN02280 IAA-amino acid hydrol 99.2 2.9E-11 6.2E-16 99.1 7.5 86 1-88 217-305 (478)
35 PRK12893 allantoate amidohydro 99.2 4.1E-11 8.8E-16 95.2 8.0 49 40-88 204-255 (412)
36 PRK12890 allantoate amidohydro 99.2 4.2E-11 9.2E-16 95.4 7.2 48 40-87 206-256 (414)
37 PRK07338 hypothetical protein; 99.2 4.9E-11 1.1E-15 94.4 7.2 80 1-87 160-242 (402)
38 PRK07907 hypothetical protein; 99.2 5.4E-11 1.2E-15 95.9 6.8 81 1-86 152-240 (449)
39 PRK06133 glutamate carboxypept 99.1 1.4E-10 3E-15 92.6 7.3 79 1-86 167-248 (410)
40 PLN02693 IAA-amino acid hydrol 99.1 1.3E-10 2.7E-15 94.2 7.0 82 1-87 167-254 (437)
41 PRK09104 hypothetical protein; 99.1 1.4E-10 3.1E-15 93.8 7.1 83 1-85 159-246 (464)
42 TIGR01879 hydantase amidase, h 99.1 2.5E-10 5.5E-15 90.8 7.7 48 41-88 198-248 (401)
43 PRK13381 peptidase T; Provisio 99.1 1.5E-10 3.2E-15 92.0 6.1 78 1-86 168-247 (404)
44 PRK07318 dipeptidase PepV; Rev 99.1 2.4E-10 5.2E-15 92.7 6.0 41 45-85 245-291 (466)
45 TIGR01887 dipeptidaselike dipe 99.1 1.1E-09 2.5E-14 88.8 9.4 36 49-84 236-277 (447)
46 PRK07079 hypothetical protein; 99.0 6.8E-10 1.5E-14 90.0 8.0 83 1-85 159-246 (469)
47 TIGR01886 dipeptidase dipeptid 99.0 8.2E-10 1.8E-14 89.9 7.7 39 45-83 240-288 (466)
48 COG0624 ArgE Acetylornithine d 99.0 1.7E-09 3.8E-14 85.8 8.1 78 1-82 147-232 (409)
49 PRK12891 allantoate amidohydro 99.0 1.8E-09 4E-14 86.3 8.1 49 40-88 204-255 (414)
50 TIGR01883 PepT-like peptidase 99.0 1.5E-09 3.2E-14 84.6 7.0 78 1-85 130-209 (361)
51 PRK08596 acetylornithine deace 99.0 4E-09 8.6E-14 84.4 9.2 79 1-89 149-238 (421)
52 PRK07205 hypothetical protein; 98.9 2E-09 4.4E-14 86.7 7.0 34 53-86 240-274 (444)
53 PRK06156 hypothetical protein; 98.9 3.3E-09 7.3E-14 87.4 6.5 34 52-85 300-334 (520)
54 PF07687 M20_dimer: Peptidase 98.8 3.1E-09 6.7E-14 69.7 3.3 45 45-89 1-46 (111)
55 PRK05469 peptidase T; Provisio 98.8 1.4E-08 3E-13 80.8 7.7 77 1-86 171-249 (408)
56 TIGR01882 peptidase-T peptidas 98.8 7.4E-09 1.6E-13 82.8 4.3 76 1-85 173-250 (410)
57 TIGR01893 aa-his-dipept aminoa 98.6 9E-08 2E-12 78.0 7.0 83 1-86 136-235 (477)
58 PRK15026 aminoacyl-histidine d 98.6 1.5E-07 3.2E-12 77.4 7.2 75 1-83 142-238 (485)
59 COG1473 AbgB Metal-dependent a 98.3 2.8E-06 6.2E-11 68.5 8.5 88 2-92 135-227 (392)
60 TIGR03176 AllC allantoate amid 98.3 2E-06 4.4E-11 69.0 6.8 63 40-106 198-263 (406)
61 PRK13799 unknown domain/N-carb 98.1 6E-06 1.3E-10 69.5 5.9 48 40-87 382-432 (591)
62 PRK08554 peptidase; Reviewed 97.9 1.2E-05 2.5E-10 65.3 4.5 79 1-84 132-234 (438)
63 PRK13590 putative bifunctional 97.9 2.8E-05 6.2E-10 65.4 6.0 46 41-86 383-431 (591)
64 COG2195 PepD Di- and tripeptid 92.9 0.083 1.8E-06 43.2 2.6 77 1-85 176-254 (414)
65 COG4187 RocB Arginine degradat 89.9 1.1 2.4E-05 37.4 6.2 83 1-84 170-261 (553)
66 PF01546 Peptidase_M20: Peptid 88.5 0.17 3.7E-06 35.3 0.5 31 1-31 67-97 (189)
67 KOG2276|consensus 83.2 3.8 8.2E-05 34.0 5.8 76 3-85 165-252 (473)
68 PF07865 DUF1652: Protein of u 61.2 35 0.00076 21.1 5.0 62 12-84 4-65 (69)
69 PRK10199 alkaline phosphatase 43.7 16 0.00035 29.4 1.8 17 1-18 172-188 (346)
70 COG0015 PurB Adenylosuccinate 41.6 49 0.0011 27.5 4.3 18 56-73 262-279 (438)
71 PTZ00129 40S ribosomal protein 24.4 1E+02 0.0023 21.9 3.1 33 45-77 85-120 (149)
72 PF11693 DUF2990: Protein of u 24.2 1.2E+02 0.0026 18.5 2.9 32 74-105 23-54 (64)
73 PF04389 Peptidase_M28: Peptid 21.8 31 0.00068 23.8 0.1 29 2-31 58-86 (179)
No 1
>KOG2275|consensus
Probab=99.93 E-value=6.3e-26 Score=180.57 Aligned_cols=114 Identities=40% Similarity=0.677 Sum_probs=108.6
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCCCCCHHHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLHENTAAEKVNYIM 80 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~~~nAi~~~~~~i 80 (114)
++|||+||..|++-+++..+|++++.++++|||+..+...+.++++|||.||++|+++|++||||.|++++|++++.++|
T Consensus 160 vpDEEi~G~~Gm~~fa~~~~~~~l~~~filDEG~~se~d~~~vfyaEkg~w~~~v~~~G~~GHss~~~~nTa~~~l~klv 239 (420)
T KOG2275|consen 160 VPDEEIGGHIGMKEFAKTEEFKKLNLGFILDEGGATENDFATVFYAEKGPWWLKVTANGTPGHSSYPPPNTAIEKLEKLV 239 (420)
T ss_pred cCchhccCcchHHHHhhhhhhcccceeEEecCCCCCcccceeEEEEeeceeEEEEEecCCCCCCCCCCCccHHHHHHHHH
Confidence 58999999999999999778999999999999988888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhCCCCCccceeeeeeeccC
Q psy14393 81 NKFLALREEEKNKLKANKNLTIGDVTTINITMLS 114 (114)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ 114 (114)
+.+.++|++|.+.+.+++.++.+++|++|++.+|
T Consensus 240 ~~~~~fr~~q~~~l~~~p~~~~~~vtT~Nv~~i~ 273 (420)
T KOG2275|consen 240 ESLEEFREKQVDLLASGPKLALGDVTTINVGIIN 273 (420)
T ss_pred HHHHHhHHHHHHHhhcCCceeccceeEEeeeeee
Confidence 9999999999999999999999999999999875
No 2
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.75 E-value=8.5e-18 Score=132.98 Aligned_cols=113 Identities=49% Similarity=0.813 Sum_probs=87.4
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCCCCCHHHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLHENTAAEKVNYIM 80 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~~~nAi~~~~~~i 80 (114)
++|||.|+..|+++|++++.++..+.++++|+|.++|+....+++++||.+|++|+++|+++|||.|...|||..|++++
T Consensus 143 ~~dEE~g~~~G~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~i~~~~kG~~~~~l~v~G~~~Hs~~~~~~nai~~l~~~i 222 (400)
T TIGR01880 143 VPDEEIGGHDGMEKFAKTDEFKALNLGFALDEGLASPDDVYRVFYAERVPWWVVVTAPGNPGHGSKLMENTAMEKLEKSV 222 (400)
T ss_pred eCCcccCcHhHHHHHHHhhhccCCceEEEEcCCCcccccccceeEEeeEEEEEEEEEecCCCCCCCCCCCCHHHHHHHHH
Confidence 57999987679999998755655557899988877776556899999999999999999999999987789999999999
Q ss_pred HHHHHHHHHHHHhhhhCCCCCccceeeeeeecc
Q psy14393 81 NKFLALREEEKNKLKANKNLTIGDVTTINITML 113 (114)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 113 (114)
..|.++...+.+.+...+....+..+++|+..+
T Consensus 223 ~~l~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i 255 (400)
T TIGR01880 223 ESIRRFRESQFQLLQSNPDLAIGDVTSVNLTKL 255 (400)
T ss_pred HHHHHhhHHHHHHHhcCccccccccceeeccee
Confidence 999887655544333332223333466666544
No 3
>PRK08737 acetylornithine deacetylase; Provisional
Probab=99.55 E-value=2.7e-14 Score=112.72 Aligned_cols=79 Identities=20% Similarity=0.218 Sum_probs=65.8
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCC--CCCHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLH--ENTAAEKVNY 78 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~--~~nAi~~~~~ 78 (114)
++|||+|+..|++++++.+ .+ ++++| +++|+ ...++++|||.+|++|+++|+++|+|.|+ +.|||..+++
T Consensus 126 ~~dEE~g~~~g~~~~~~~~-~~---~~~~i---v~Ept-~~~~~~~~kG~~~~~v~v~Gk~aHas~p~~~G~NAI~~~~~ 197 (364)
T PRK08737 126 SSDEEANDPRCVAAFLARG-IP---YEAVL---VAEPT-MSEAVLAHRGISSVLMRFAGRAGHASGKQDPSASALHQAMR 197 (364)
T ss_pred EcccccCchhhHHHHHHhC-CC---CCEEE---EcCCC-CceeEEecceeEEEEEEEEeeccccCCCcccCCCHHHHHHH
Confidence 5899998767999998853 22 67787 46786 46788999999999999999999999984 5999999999
Q ss_pred HHHHHHHHH
Q psy14393 79 IMNKFLALR 87 (114)
Q Consensus 79 ~i~~l~~~~ 87 (114)
+|.++.++.
T Consensus 198 ~l~~~~~~~ 206 (364)
T PRK08737 198 WGGQALDHV 206 (364)
T ss_pred HHHHHHHHH
Confidence 998876553
No 4
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.54 E-value=3.5e-14 Score=112.94 Aligned_cols=84 Identities=20% Similarity=0.341 Sum_probs=68.7
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEKVNYI 79 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~~~~ 79 (114)
++|||+|+..|..+|++++.++..+++++|. ++|+....+.+++||.+|++++++|+++|||.|+ +.|||..|+++
T Consensus 154 ~~dEE~g~~~g~~~l~~~~~~~~~~~d~~i~---~ep~~~~~i~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~ 230 (427)
T PRK13013 154 TADEESGGFGGVAYLAEQGRFSPDRVQHVII---PEPLNKDRICLGHRGVWWAEVETRGRIAHGSMPFLGDSAIRHMGAV 230 (427)
T ss_pred EeccccCChhHHHHHHhcCCccccCCCEEEE---ecCCCCCceEEeeeeEEEEEEEEEccccccCCCCcCcCHHHHHHHH
Confidence 4799998766888999876665333677773 5676434688999999999999999999999996 59999999999
Q ss_pred HHHHHHHH
Q psy14393 80 MNKFLALR 87 (114)
Q Consensus 80 i~~l~~~~ 87 (114)
|.+|+++.
T Consensus 231 l~~l~~~~ 238 (427)
T PRK13013 231 LAEIEERL 238 (427)
T ss_pred HHHHHHHh
Confidence 99997653
No 5
>PRK09133 hypothetical protein; Provisional
Probab=99.51 E-value=4.3e-14 Score=114.43 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=67.6
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcc-------cCCCcceeeecccceEEEEEEEeccCCCcCCCCCCCHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIA-------SPTEVFALFNGERTIWQMKIHCPGTPGHGSLLHENTAA 73 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~-------~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~~~nAi 73 (114)
++|||++|..|+++|+++.. ...+++++|+||+. +| +...+++++||.+|++|+++|+++|||.|...|||
T Consensus 172 ~~dEE~~g~~G~~~l~~~~~-~~~~~~~~i~e~~~~~~~~~gep-t~~~i~~g~kG~~~~~i~v~G~~~Hss~p~~~nAi 249 (472)
T PRK09133 172 TGDEEGTPMNGVAWLAENHR-DLIDAEFALNEGGGGTLDEDGKP-VLLTVQAGEKTYADFRLEVTNPGGHSSRPTKDNAI 249 (472)
T ss_pred ECccccCccchHHHHHHHHh-hccCeEEEEECCCccccCCCCCc-eEEEeeeecceeEEEEEEEecCCCCCCCCCCCChH
Confidence 57999555689999997521 11236788877653 44 35568899999999999999999999999889999
Q ss_pred HHHHHHHHHHHHH
Q psy14393 74 EKVNYIMNKFLAL 86 (114)
Q Consensus 74 ~~~~~~i~~l~~~ 86 (114)
..|+++|.+|.++
T Consensus 250 ~~l~~~l~~l~~~ 262 (472)
T PRK09133 250 YRLAAALSRLAAY 262 (472)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999764
No 6
>PRK06915 acetylornithine deacetylase; Validated
Probab=99.51 E-value=9.3e-14 Score=110.63 Aligned_cols=81 Identities=23% Similarity=0.422 Sum_probs=67.4
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEKVNYI 79 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~~~~ 79 (114)
++|||+|| .|+.+++..+ ++ +|+++. ++|+ ...+++++||.+|++|+++|+++|+|.|+ +.|||..++++
T Consensus 165 ~~dEE~g~-~G~~~~~~~~-~~---~d~~i~---~ep~-~~~i~~~~~G~~~~~i~v~G~~~H~s~p~~g~nAi~~~~~~ 235 (422)
T PRK06915 165 VIEEESGG-AGTLAAILRG-YK---ADGAII---PEPT-NMKFFPKQQGSMWFRLHVKGKAAHGGTRYEGVSAIEKSMFV 235 (422)
T ss_pred ecccccCC-cchHHHHhcC-cC---CCEEEE---CCCC-CccceeecccEEEEEEEEEeeccccCCCCcCcCHHHHHHHH
Confidence 47999986 5988887753 33 678884 5675 45788999999999999999999999996 59999999999
Q ss_pred HHHHHHHHHHH
Q psy14393 80 MNKFLALREEE 90 (114)
Q Consensus 80 i~~l~~~~~~~ 90 (114)
+..|.+++..+
T Consensus 236 ~~~l~~l~~~~ 246 (422)
T PRK06915 236 IDHLRKLEEKR 246 (422)
T ss_pred HHHHHHHHHHh
Confidence 99998887543
No 7
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.50 E-value=1.3e-13 Score=108.14 Aligned_cols=82 Identities=27% Similarity=0.385 Sum_probs=67.7
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEKVNYI 79 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~~~~ 79 (114)
++|||.|+ .|++++++++.++ ++++| +++|+ ...+++++||.+|++|+++|+++|||.|. +.|||..++++
T Consensus 140 ~~~EE~g~-~G~~~~~~~~~~~---~d~~i---~~ep~-~~~~~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~ 211 (383)
T PRK05111 140 TADEETSM-AGARAFAEATAIR---PDCAI---IGEPT-SLKPVRAHKGHMSEAIRITGQSGHSSDPALGVNAIELMHDV 211 (383)
T ss_pred EeccccCc-ccHHHHHhcCCCC---CCEEE---EcCCC-CCceeecccceEEEEEEEEeechhccCCccCcCHHHHHHHH
Confidence 47999986 6999999865444 46777 35675 35567899999999999999999999996 59999999999
Q ss_pred HHHHHHHHHHH
Q psy14393 80 MNKFLALREEE 90 (114)
Q Consensus 80 i~~l~~~~~~~ 90 (114)
+.++.+++...
T Consensus 212 i~~l~~~~~~~ 222 (383)
T PRK05111 212 IGELLQLRDEL 222 (383)
T ss_pred HHHHHHHHHHH
Confidence 99998876543
No 8
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.49 E-value=1.2e-13 Score=108.29 Aligned_cols=84 Identities=21% Similarity=0.289 Sum_probs=68.9
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEKVNYI 79 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~~~~ 79 (114)
++|||.|+ .|++++++++.+++ ++++|. ++|+....+.+++||.++++|+++|+++|||.|. +.|||..++++
T Consensus 136 ~~~EE~g~-~G~~~~~~~~~~~~--~d~~i~---~~~~~~~~v~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~ 209 (375)
T TIGR01910 136 VVDEESGE-AGTLYLLQRGYFKD--ADGVLI---PEPSGGDNIVIGHKGSIWFKLRVKGKQAHASFPQFGVNAIMKLAKL 209 (375)
T ss_pred EcCcccCc-hhHHHHHHcCCCCC--CCEEEE---CCCCCCCceEEEecceEEEEEEEeeeecccCCCCcchhHHHHHHHH
Confidence 47999985 69999998755543 567763 4554346788999999999999999999999996 49999999999
Q ss_pred HHHHHHHHHHH
Q psy14393 80 MNKFLALREEE 90 (114)
Q Consensus 80 i~~l~~~~~~~ 90 (114)
|.+|.++....
T Consensus 210 l~~l~~~~~~~ 220 (375)
T TIGR01910 210 ITELNELEEHI 220 (375)
T ss_pred HHHHHHHHHHh
Confidence 99998876543
No 9
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.49 E-value=8.2e-14 Score=108.72 Aligned_cols=79 Identities=19% Similarity=0.085 Sum_probs=63.4
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCCCCCHHHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLHENTAAEKVNYIM 80 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~~~nAi~~~~~~i 80 (114)
++|||.|+. |...++.+ .++ ++++| +++|+....+++++||.+|++++++|+++|||.| +.|||..|++++
T Consensus 119 ~~dEE~g~~-~~~~~l~~-~~~---~d~~i---v~Ept~~~~i~~~~kG~~~~~l~~~G~~~Hss~~-g~NAi~~~~~~l 189 (348)
T PRK04443 119 AVEEEAPSS-GGARLVAD-RER---PDAVI---IGEPSGWDGITLGYKGRLLVTYVATSESFHSAGP-EPNAAEDAIEWW 189 (348)
T ss_pred EcccccCCh-hHHHHHHh-ccC---CCEEE---EeCCCCccceeeecccEEEEEEEEEeCCCccCCC-CCCHHHHHHHHH
Confidence 579999874 55554443 232 68887 4677644468999999999999999999999988 799999999999
Q ss_pred HHHHHHHH
Q psy14393 81 NKFLALRE 88 (114)
Q Consensus 81 ~~l~~~~~ 88 (114)
.+|.++..
T Consensus 190 ~~l~~~~~ 197 (348)
T PRK04443 190 LAVEAWFE 197 (348)
T ss_pred HHHHHHHh
Confidence 99987654
No 10
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.48 E-value=1e-13 Score=108.66 Aligned_cols=81 Identities=14% Similarity=0.191 Sum_probs=66.9
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEKVNYI 79 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~~~~ 79 (114)
++|||.|+ .|+++|++++.+++ +++++. ++|+ ...+.+++||.+|++|+++|+++|||.|. +.|||..++++
T Consensus 131 ~~dEE~g~-~G~~~~~~~~~~~~--~d~~i~---~ep~-~~~i~~~~~G~~~~~i~~~G~~~Hss~p~~g~nAi~~~~~~ 203 (377)
T PRK08588 131 TAGEEVGE-LGAKQLTEKGYADD--LDALII---GEPS-GHGIVYAHKGSMDYKVTSTGKAAHSSMPELGVNAIDPLLEF 203 (377)
T ss_pred EcccccCc-hhHHHHHhcCccCC--CCEEEE---ecCC-CceeEEEEEEEEEEEEEEEeechhccCCccccCHHHHHHHH
Confidence 47999875 79999998765544 566663 5564 45688999999999999999999999996 59999999999
Q ss_pred HHHHHHHHH
Q psy14393 80 MNKFLALRE 88 (114)
Q Consensus 80 i~~l~~~~~ 88 (114)
+.++.++..
T Consensus 204 l~~l~~~~~ 212 (377)
T PRK08588 204 YNEQKEYFD 212 (377)
T ss_pred HHHHHHHhh
Confidence 999977543
No 11
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.47 E-value=3.4e-13 Score=105.78 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=66.8
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEKVNYI 79 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~~~~ 79 (114)
++|||.|+ .|+++|++........++++|. ++|+ ...+++++||.+|++|+++|+++|+|.|. +.||+..++++
T Consensus 133 ~~dEE~g~-~G~~~l~~~~~~~~~~~d~~i~---~ep~-~~~~~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~ 207 (385)
T PRK07522 133 SYDEEVGC-LGVPSMIARLPERGVKPAGCIV---GEPT-SMRPVVGHKGKAAYRCTVRGRAAHSSLAPQGVNAIEYAARL 207 (385)
T ss_pred EeccccCC-ccHHHHHHHhhhcCCCCCEEEE---ccCC-CCeeeeeecceEEEEEEEEeeccccCCCccCcCHHHHHHHH
Confidence 47999975 7999999742111123678873 5665 46788999999999999999999999996 59999999999
Q ss_pred HHHHHHHHHH
Q psy14393 80 MNKFLALREE 89 (114)
Q Consensus 80 i~~l~~~~~~ 89 (114)
+..|+++...
T Consensus 208 i~~l~~~~~~ 217 (385)
T PRK07522 208 IAHLRDLADR 217 (385)
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 12
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.44 E-value=6.2e-13 Score=103.32 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=66.5
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEKVNYI 79 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~~~~ 79 (114)
++|||.|+ .|+++++++..++ +++++ +++|+ ...+..++||.+|++|+++|+++|+|.|. +.|||..++++
T Consensus 127 ~~~EE~g~-~G~~~~~~~~~~~---~d~~i---~~ep~-~~~~~~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~ 198 (364)
T TIGR01892 127 TADEEVGC-TGAPKMIEAGAGR---PRHAI---IGEPT-RLIPVRAHKGYASAEVTVRGRSGHSSYPDSGVNAIFRAGRF 198 (364)
T ss_pred EeccccCC-cCHHHHHHhcCCC---CCEEE---ECCCC-CceeEEeeceEEEEEEEEEcccccccCCccCcCHHHHHHHH
Confidence 47999975 7999999864333 57777 35675 34567899999999999999999999996 49999999999
Q ss_pred HHHHHHHHHH
Q psy14393 80 MNKFLALREE 89 (114)
Q Consensus 80 i~~l~~~~~~ 89 (114)
+.+|.++...
T Consensus 199 i~~l~~~~~~ 208 (364)
T TIGR01892 199 LQRLVHLADT 208 (364)
T ss_pred HHHHHHHHHH
Confidence 9999877543
No 13
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.44 E-value=3.7e-13 Score=104.87 Aligned_cols=77 Identities=21% Similarity=0.306 Sum_probs=63.9
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCCCCCHHHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLHENTAAEKVNYIM 80 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~~~nAi~~~~~~i 80 (114)
++|||.|+ .|++++++++ ++ ++++| +++|+....+.+++||.+|++|+++|+++|||.|. .|||..|++++
T Consensus 119 ~~dEE~g~-~G~~~l~~~~-~~---~d~~i---~~ep~~~~~i~~~~kG~~~~~i~v~G~~~Has~p~-~nAi~~~~~~l 189 (346)
T PRK00466 119 LADEESTS-IGAKELVSKG-FN---FKHII---VGEPSNGTDIVVEYRGSIQLDIMCEGTPEHSSSAK-SNLIVDISKKI 189 (346)
T ss_pred EcCcccCC-ccHHHHHhcC-CC---CCEEE---EcCCCCCCceEEEeeEEEEEEEEEEeeccccCCCC-cCHHHHHHHHH
Confidence 58999875 6999999863 32 67777 36776545688999999999999999999999986 59999999999
Q ss_pred HHHHHH
Q psy14393 81 NKFLAL 86 (114)
Q Consensus 81 ~~l~~~ 86 (114)
.+|.++
T Consensus 190 ~~l~~~ 195 (346)
T PRK00466 190 IEVYKQ 195 (346)
T ss_pred HHHHhc
Confidence 988653
No 14
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.42 E-value=3e-13 Score=105.77 Aligned_cols=85 Identities=18% Similarity=0.154 Sum_probs=65.2
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCc----ceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEV----FALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEK 75 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~----~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~ 75 (114)
++|||.++..|++.+++........++++|. ++|+.. ..+.+++||.+|++++++|+++|+|.|. +.|||..
T Consensus 130 ~~~EE~~~~~G~~~~~~~~~~~~~~~d~~i~---~ep~~~~~~~~~i~~g~~g~~~~~i~v~G~~~Ha~~p~~g~nAi~~ 206 (375)
T PRK13009 130 TSDEEGPAINGTVKVLEWLKARGEKIDYCIV---GEPTSTERLGDVIKNGRRGSLTGKLTVKGVQGHVAYPHLADNPIHL 206 (375)
T ss_pred EeecccccccCHHHHHHHHHHcCcCCCEEEE---cCCCcccCCCCeEEEecceEEEEEEEEEecCcccCCCCcccCHHHH
Confidence 4799997767999988631111223678863 444421 2478999999999999999999999996 5999999
Q ss_pred HHHHHHHHHHHHH
Q psy14393 76 VNYIMNKFLALRE 88 (114)
Q Consensus 76 ~~~~i~~l~~~~~ 88 (114)
++++|.+|..+..
T Consensus 207 ~~~~l~~l~~~~~ 219 (375)
T PRK13009 207 AAPALAELAATEW 219 (375)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999977543
No 15
>PRK07906 hypothetical protein; Provisional
Probab=99.42 E-value=5.8e-13 Score=106.31 Aligned_cols=84 Identities=23% Similarity=0.385 Sum_probs=65.6
Q ss_pred CCccCcCcccchHHhhccc--ccccCCeeEEEecCccc------CCCcceeeecccceEEEEEEEeccCCCcCCCCCCCH
Q psy14393 1 MLDEEIGGSQGMSLFVTTD--AFKKMNVGCALDEGIAS------PTEVFALFNGERTIWQMKIHCPGTPGHGSLLHENTA 72 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~--~~~~~~~~~~idEG~~~------~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~~~nA 72 (114)
++|||+||..|+++|++.. .+.. +++++.|..+. +...+.+++++||.+|++|+++|+++|||+|...||
T Consensus 136 ~~dEE~g~~~g~~~l~~~~~~~~~~--~~~ii~e~~~~~~~~~~~~~~~~i~~~~kG~~~~~v~v~G~~~Hss~p~~~nA 213 (426)
T PRK07906 136 VADEEAGGTYGAHWLVDNHPELFEG--VTEAISEVGGFSLTVPGRDRLYLIETAEKGLAWMRLTARGRAGHGSMVNDDNA 213 (426)
T ss_pred ecCcccchhhhHHHHHHHHHHhccc--hheEEECCCceeeccCCCccEEEEEeccceEEEEEEEEEeCCCCCCCCCCCCH
Confidence 4799998877999998752 2222 34567664321 112246899999999999999999999999988999
Q ss_pred HHHHHHHHHHHHHH
Q psy14393 73 AEKVNYIMNKFLAL 86 (114)
Q Consensus 73 i~~~~~~i~~l~~~ 86 (114)
|..++++|.+|.++
T Consensus 214 i~~~~~~l~~l~~~ 227 (426)
T PRK07906 214 VTRLAEAVARIGRH 227 (426)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999764
No 16
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=99.41 E-value=8.3e-13 Score=104.51 Aligned_cols=81 Identities=22% Similarity=0.342 Sum_probs=64.5
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEKVNYI 79 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~~~~ 79 (114)
++|||.++..+.+++++...++ ++++| +++|+ ...+.+++||.+|++++++|+++|||.|. +.|||..++++
T Consensus 139 ~~dEE~~~g~~~~~~~~~~~~~---~d~~i---v~ep~-~~~i~~g~~G~~~~~v~~~G~~~Hss~p~~g~nAi~~~~~~ 211 (395)
T TIGR03320 139 TVQEEDCDGLCWQYIIEEDGIK---PEFVV---ITEPT-DMNIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPI 211 (395)
T ss_pred cccccccCchHHHHHHHhcCCC---CCEEE---EcCCC-ccceEEecceEEEEEEEEeeeccccCCCCCCCCHHHHHHHH
Confidence 4689976434566777643333 67777 35675 56788999999999999999999999996 59999999999
Q ss_pred HHHHHHHHH
Q psy14393 80 MNKFLALRE 88 (114)
Q Consensus 80 i~~l~~~~~ 88 (114)
+.+|+++..
T Consensus 212 l~~l~~~~~ 220 (395)
T TIGR03320 212 LKELSQLNA 220 (395)
T ss_pred HHHHHHHHH
Confidence 999987654
No 17
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.41 E-value=8.8e-13 Score=101.85 Aligned_cols=79 Identities=25% Similarity=0.360 Sum_probs=65.5
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEKVNYI 79 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~~~~ 79 (114)
++|||.|+ .|++++++. ++ .+++|. .+|+ ...+++++||.+|++|+++|+++|+|.|+ +.|||..++++
T Consensus 116 ~~dEE~g~-~G~~~~~~~--~~---~d~~i~---~ep~-~~~i~~~~~g~~~~~i~~~G~~~H~s~p~~g~nAi~~~a~~ 185 (347)
T PRK08652 116 VSDEEEGG-RGSALFAER--YR---PKMAIV---LEPT-DLKVAIAHYGNLEAYVEVKGKPSHGACPESGVNAIEKAFEM 185 (347)
T ss_pred ecCcccCC-hhHHHHHHh--cC---CCEEEE---ecCC-CCceeeecccEEEEEEEEEeeecccCCCCcCcCHHHHHHHH
Confidence 58999986 699999974 33 366763 4665 35788999999999999999999999996 59999999999
Q ss_pred HHHHHHHHHH
Q psy14393 80 MNKFLALREE 89 (114)
Q Consensus 80 i~~l~~~~~~ 89 (114)
+.+|.++...
T Consensus 186 i~~l~~~~~~ 195 (347)
T PRK08652 186 LEKLKELLKA 195 (347)
T ss_pred HHHHHHHHHh
Confidence 9999876543
No 18
>PRK06446 hypothetical protein; Provisional
Probab=99.40 E-value=6e-13 Score=106.92 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=64.7
Q ss_pred CCccCcCcccchHHhhcc-c-ccccCCeeEEEecCccc-CCCcceeeecccceEEEEEEEec--cCCCcCCCC-CCCHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTT-D-AFKKMNVGCALDEGIAS-PTEVFALFNGERTIWQMKIHCPG--TPGHGSLLH-ENTAAE 74 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~-~-~~~~~~~~~~idEG~~~-~~~~~~i~~aeKG~~~~~v~v~G--~~gHsS~P~-~~nAi~ 74 (114)
++|||.|+ .|+++++++ + .++ ++++|.|+.+. +.....+++++||.+|++++++| +++|||.|+ +.|||.
T Consensus 133 ~~dEE~g~-~g~~~~l~~~~~~~~---~d~vi~E~~~~~~~~~~~i~~~~kG~~~~~l~v~G~~~~~Hss~p~~g~NAi~ 208 (436)
T PRK06446 133 EGEEEIGS-PNLEDFIEKNKNKLK---ADSVIMEGAGLDPKGRPQIVLGVKGLLYVELVLRTGTKDLHSSNAPIVRNPAW 208 (436)
T ss_pred EcccccCC-HhHHHHHHHHHHHhC---CCEEEECCCCccCCCCeEEEEecCeEEEEEEEEEeCCCCCCCCCCccCCCHHH
Confidence 47999986 688888874 1 223 57888764332 22233689999999999999999 999999986 599999
Q ss_pred HHHHHHHHHHHH
Q psy14393 75 KVNYIMNKFLAL 86 (114)
Q Consensus 75 ~~~~~i~~l~~~ 86 (114)
.|+++|.+|.++
T Consensus 209 ~~~~~l~~l~~~ 220 (436)
T PRK06446 209 DLVKLLSTLVDG 220 (436)
T ss_pred HHHHHHHhhCCC
Confidence 999999999754
No 19
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=99.39 E-value=1e-12 Score=103.79 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=66.4
Q ss_pred CCccCcCcc-cchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHHHHH
Q psy14393 1 MLDEEIGGS-QGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEKVNY 78 (114)
Q Consensus 1 ~~DEE~Gg~-~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~~~ 78 (114)
++|||+|+. .|++++++... ....++++| +++|+ ...+++++||.+|++++++|+++|||.|. +.|||..|++
T Consensus 136 ~~dEE~~~~~~G~~~~~~~~~-~~~~~d~~i---v~Ept-~~~i~~g~~G~~~~~i~v~G~~~H~s~p~~g~NAi~~~~~ 210 (373)
T TIGR01900 136 YDCEEVAAEKNGLGHIRDAHP-DWLAADFAI---IGEPT-GGGIEAGCNGNIRFDVTAHGVAAHSARAWLGDNAIHKAAD 210 (373)
T ss_pred EecccccCCCCCHHHHHHhCc-ccccCCEEE---EECCC-CCcccccceeeEEEEEEEEeeccccCCCCCCCCHHHHHHH
Confidence 579998743 59999997521 111267777 36675 46789999999999999999999999995 5999999999
Q ss_pred HHHHHHHHHH
Q psy14393 79 IMNKFLALRE 88 (114)
Q Consensus 79 ~i~~l~~~~~ 88 (114)
++.+|+++..
T Consensus 211 ~i~~l~~l~~ 220 (373)
T TIGR01900 211 IINKLAAYEA 220 (373)
T ss_pred HHHHHHHhhc
Confidence 9999987653
No 20
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=99.38 E-value=1.6e-12 Score=102.96 Aligned_cols=81 Identities=22% Similarity=0.338 Sum_probs=64.8
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEKVNYI 79 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~~~~ 79 (114)
++|||.++..|+.+++++..++ ++++| +++|+ ...+.+++||.+|++|+++|+++|||.|. +.|||..++++
T Consensus 139 ~~dEE~~~g~~~~~~~~~~~~~---~d~~i---~~ep~-~~~i~~g~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~ 211 (395)
T TIGR03526 139 TVQEEDCDGLCWQYIIEEDKIK---PEFVV---ITEPT-DMNIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPI 211 (395)
T ss_pred ecccccCCcHhHHHHHhccCCC---CCEEE---ecCCC-CceEEEEcceEEEEEEEEecCCCccCCCCCCCCHHHHHHHH
Confidence 4689954335778888754443 57777 35675 46788999999999999999999999996 59999999999
Q ss_pred HHHHHHHHH
Q psy14393 80 MNKFLALRE 88 (114)
Q Consensus 80 i~~l~~~~~ 88 (114)
+.+|+++..
T Consensus 212 i~~l~~~~~ 220 (395)
T TIGR03526 212 LKELSQLNA 220 (395)
T ss_pred HHHHHHhhh
Confidence 999987654
No 21
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=99.38 E-value=9.8e-13 Score=102.94 Aligned_cols=85 Identities=20% Similarity=0.195 Sum_probs=64.1
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCC----cceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTE----VFALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEK 75 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~----~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~ 75 (114)
++|||.++..|++.+++.-......+++++. ++|+. ...+++++||.+|++++++|+++|+|.|. +.|||..
T Consensus 127 ~~dEE~~~~~G~~~~~~~~~~~~~~~d~~i~---~ep~~~~~~~~~i~~~~~G~~~~~v~v~G~~~H~~~p~~g~nAi~~ 203 (370)
T TIGR01246 127 TSDEEGTAIDGTKKVVETLMARDELIDYCIV---GEPSSVKKLGDVIKNGRRGSITGNLTIKGIQGHVAYPHLANNPIHK 203 (370)
T ss_pred EeccccCCCcCHHHHHHHHHhcCCCCCEEEE---cCCCCcccCCceEEEeeeEEEEEEEEEEccCcccCCcccCCCHHHH
Confidence 4799987656999988631111123688873 34431 12478999999999999999999999996 5999999
Q ss_pred HHHHHHHHHHHHH
Q psy14393 76 VNYIMNKFLALRE 88 (114)
Q Consensus 76 ~~~~i~~l~~~~~ 88 (114)
+++++..|.++..
T Consensus 204 ~~~~i~~l~~~~~ 216 (370)
T TIGR01246 204 AAPALAELTAIKW 216 (370)
T ss_pred HHHHHHHHhhhhh
Confidence 9999999876543
No 22
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.38 E-value=2.2e-12 Score=101.37 Aligned_cols=82 Identities=21% Similarity=0.217 Sum_probs=65.0
Q ss_pred CCccCcCcccchHHhhcc--cccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTT--DAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEKVN 77 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~--~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~~ 77 (114)
++|||.|+..|+++|++. +.+.+ .++++.-..++|+ ...+.+++||.+|++|+++|+++|||+|+ +.|||..++
T Consensus 148 ~~dEE~g~~~g~~~~~~~~~~~~~~--~d~~i~~~~~~~~-~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~ 224 (400)
T PRK13983 148 VSDEETGSKYGIQYLLKKHPELFKK--DDLILVPDAGNPD-GSFIEIAEKSILWLKFTVKGKQCHASTPENGINAHRAAA 224 (400)
T ss_pred EeccccCCcccHHHHHhhcccccCC--CCEEEEecCCCCC-CceeEEeecceEEEEEEEEeEccccCCCCCCCCHHHHHH
Confidence 479999875699999985 33443 4555532224454 34678999999999999999999999996 599999999
Q ss_pred HHHHHHHH
Q psy14393 78 YIMNKFLA 85 (114)
Q Consensus 78 ~~i~~l~~ 85 (114)
+++.++.+
T Consensus 225 ~~i~~l~~ 232 (400)
T PRK13983 225 DFALELDE 232 (400)
T ss_pred HHHHHHHH
Confidence 99999976
No 23
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.36 E-value=2.7e-12 Score=101.04 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=65.7
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEKVNYI 79 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~~~~ 79 (114)
++|||+|+ .|+++++++..++ +++++. ++|+....+.+++||.+|++|+++|+++|||.|. +.|||..|+++
T Consensus 142 ~~~EE~g~-~G~~~~~~~~~~~---~d~~i~---~~~~~~~~i~~~~~G~~~~~i~v~G~~~H~~~p~~g~nAi~~~~~~ 214 (394)
T PRK08651 142 VPDEETGG-TGTGYLVEEGKVT---PDYVIV---GEPSGLDNICIGHRGLVWGVVKVYGKQAHASTPWLGINAFEAAAKI 214 (394)
T ss_pred ecCccccc-hhHHHHHhccCCC---CCEEEE---ecCCCCCceEEecccEEEEEEEEEEeccccCCCccccCHHHHHHHH
Confidence 47999986 7999999864443 456652 4454322688999999999999999999999996 59999999999
Q ss_pred HHHHHHHHH
Q psy14393 80 MNKFLALRE 88 (114)
Q Consensus 80 i~~l~~~~~ 88 (114)
+.+|.++..
T Consensus 215 i~~l~~~~~ 223 (394)
T PRK08651 215 AERLKSSLS 223 (394)
T ss_pred HHHHHHHHH
Confidence 999987654
No 24
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.36 E-value=2.5e-12 Score=99.77 Aligned_cols=82 Identities=15% Similarity=0.162 Sum_probs=66.1
Q ss_pred CCccCcCcc-cchHHhhcc-cccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHHHH
Q psy14393 1 MLDEEIGGS-QGMSLFVTT-DAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEKVN 77 (114)
Q Consensus 1 ~~DEE~Gg~-~G~~~l~~~-~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~~ 77 (114)
++|||+|+. .|++++++. +.+. +++++|. ++|+ ...+.+++||.+|++++++|+++|||.|+ +.|||..++
T Consensus 122 ~~~EE~~~~~~G~~~~~~~~~~~~--~~d~~i~---~ep~-~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~ 195 (352)
T PRK13007 122 YDCEEVEAEANGLGRLAREHPEWL--AGDFAIL---LEPT-DGVIEAGCQGTLRVTVTFHGRRAHSARSWLGENAIHKAA 195 (352)
T ss_pred EecccccCCcccHHHHHHhccccc--CCCEEEE---ecCC-CCceEeeccceEEEEEEEEecccccCCCccCcCHHHHHH
Confidence 479998753 589999874 2222 2688874 4564 45789999999999999999999999996 599999999
Q ss_pred HHHHHHHHHHH
Q psy14393 78 YIMNKFLALRE 88 (114)
Q Consensus 78 ~~i~~l~~~~~ 88 (114)
+++.++.++..
T Consensus 196 ~~i~~l~~~~~ 206 (352)
T PRK13007 196 PVLARLAAYEP 206 (352)
T ss_pred HHHHHHHHhcc
Confidence 99999987654
No 25
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.35 E-value=5.4e-12 Score=101.10 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=65.3
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEKVNYI 79 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~~~~ 79 (114)
++|||.+| .|+.+++..+ +. +++++ +++|+ ...+.+++||.+|++++++|+++|||.|. +.||+..++++
T Consensus 169 ~~dEE~~g-~g~~~~~~~~-~~---~d~~i---v~ep~-~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~ 239 (427)
T PRK06837 169 VIEEESTG-NGALSTLQRG-YR---ADACL---IPEPT-GEKLVRAQVGVIWFRLRVRGAPVHVREAGTGANAIDAAYHL 239 (427)
T ss_pred EeccccCC-HhHHHHHhcC-cC---CCEEE---EcCCC-CCccccccceeEEEEEEEEeeccccCCcccCcCHHHHHHHH
Confidence 46999876 5888877653 22 57776 35665 35688999999999999999999999996 59999999999
Q ss_pred HHHHHHHHHHH
Q psy14393 80 MNKFLALREEE 90 (114)
Q Consensus 80 i~~l~~~~~~~ 90 (114)
+.+|.++..+.
T Consensus 240 i~~l~~~~~~~ 250 (427)
T PRK06837 240 IQALRELEAEW 250 (427)
T ss_pred HHHHHHHHHHH
Confidence 99998876543
No 26
>PRK08262 hypothetical protein; Provisional
Probab=99.35 E-value=6.3e-12 Score=102.15 Aligned_cols=83 Identities=22% Similarity=0.271 Sum_probs=63.7
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCc----------ccCCCcceeeecccceEEEEEEEeccCCCcCCCCCC
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGI----------ASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLHEN 70 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~----------~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~~~ 70 (114)
++|||+|+ .|++++++.-..+...+++++++|. .+|+ ..+++++||.+|++|+++|+++|||.|...
T Consensus 185 ~~dEE~g~-~G~~~l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~p~--~~i~~~~kG~~~~~i~v~G~~~Hss~p~~~ 261 (486)
T PRK08262 185 GHDEEVGG-LGARAIAELLKERGVRLAFVLDEGGAITEGVLPGVKKPV--ALIGVAEKGYATLELTARATGGHSSMPPRQ 261 (486)
T ss_pred ecccccCC-cCHHHHHHHHHHhcCCEEEEEeCCceecccccCCCCceE--EeeEEeeeeeEEEEEEEecCCCCCCCCCCC
Confidence 47999987 5999988631111123677776542 1222 357899999999999999999999999669
Q ss_pred CHHHHHHHHHHHHHHH
Q psy14393 71 TAAEKVNYIMNKFLAL 86 (114)
Q Consensus 71 nAi~~~~~~i~~l~~~ 86 (114)
|||..++++|.+|+++
T Consensus 262 nai~~l~~~l~~l~~~ 277 (486)
T PRK08262 262 TAIGRLARALTRLEDN 277 (486)
T ss_pred CHHHHHHHHHHHHhhC
Confidence 9999999999999864
No 27
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.33 E-value=1.8e-12 Score=103.39 Aligned_cols=48 Identities=10% Similarity=0.105 Sum_probs=42.6
Q ss_pred ceeeecccceEEEEEEEeccCCCcC-CC-C-CCCHHHHHHHHHHHHHHHHH
Q psy14393 41 FALFNGERTIWQMKIHCPGTPGHGS-LL-H-ENTAAEKVNYIMNKFLALRE 88 (114)
Q Consensus 41 ~~i~~aeKG~~~~~v~v~G~~gHsS-~P-~-~~nAi~~~~~~i~~l~~~~~ 88 (114)
..|.+++||..|++|+++|+++|+| .| . +.|||..+++++.+|+++..
T Consensus 206 ~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~ 256 (413)
T PRK09290 206 IGVVTGIVGQRRYRVTFTGEANHAGTTPMALRRDALLAAAEIILAVERIAA 256 (413)
T ss_pred EEEEeeeeccEEEEEEEEEECCCCCCCCchhccCHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999988 68 3 49999999999999977653
No 28
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=99.33 E-value=1.6e-12 Score=101.92 Aligned_cols=83 Identities=13% Similarity=0.128 Sum_probs=62.3
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEe-cCcc-cCCCc--ceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALD-EGIA-SPTEV--FALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEK 75 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~id-EG~~-~~~~~--~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~ 75 (114)
++|||.+ .|++++++++.+++ +++++. |..+ .+... ....+++||..|++++++|+++|+|.|+ +.|||..
T Consensus 121 ~~dEE~~--~G~~~~~~~~~~~~--~d~~i~~e~~~~~~~~~~~~~~~~~~~g~~~~~i~~~G~~~Has~p~~g~nAi~~ 196 (363)
T TIGR01891 121 QPAEEGG--GGATKMIEDGVLDD--VDAILGLHPDPSIPAGTVGLRPGTIMAAADKFEVTIHGKGAHAARPHLGRDALDA 196 (363)
T ss_pred eecCcCc--chHHHHHHCCCCCC--cCEEEEECCCCCCCCeEEEECCCcceeecceEEEEEEeecccccCcccccCHHHH
Confidence 5899985 59999998765554 566664 2111 11111 2245688999999999999999999996 5999999
Q ss_pred HHHHHHHHHHHH
Q psy14393 76 VNYIMNKFLALR 87 (114)
Q Consensus 76 ~~~~i~~l~~~~ 87 (114)
|++++.+++++.
T Consensus 197 ~~~~i~~l~~~~ 208 (363)
T TIGR01891 197 AAQLVVALQQIV 208 (363)
T ss_pred HHHHHHHHHHHh
Confidence 999999997764
No 29
>PRK13004 peptidase; Reviewed
Probab=99.33 E-value=4.4e-12 Score=100.60 Aligned_cols=81 Identities=21% Similarity=0.317 Sum_probs=66.2
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEKVNYI 79 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~~~~ 79 (114)
++|||.++..|++++++++.++ +++++. ++|+ ...+.+++||.+|++|+++|+++|||.|. +.|||..++++
T Consensus 141 ~~~EE~~~g~~~~~~~~~~~~~---~d~~i~---~e~~-~~~i~~~~~G~~~~~v~v~G~~~Ha~~p~~g~nAi~~~~~~ 213 (399)
T PRK13004 141 TVQEEDCDGLCWRYIIEEDKIK---PDFVVI---TEPT-DLNIYRGQRGRMEIRVETKGVSCHGSAPERGDNAIYKMAPI 213 (399)
T ss_pred EcccccCcchhHHHHHHhcCCC---CCEEEE---ccCC-CCceEEecceEEEEEEEEeccccccCCCCCCCCHHHHHHHH
Confidence 4799975446888898864443 677773 4564 56788999999999999999999999996 59999999999
Q ss_pred HHHHHHHHH
Q psy14393 80 MNKFLALRE 88 (114)
Q Consensus 80 i~~l~~~~~ 88 (114)
+.+|.+++.
T Consensus 214 i~~l~~~~~ 222 (399)
T PRK13004 214 LNELEELNP 222 (399)
T ss_pred HHHHHhhcc
Confidence 999987754
No 30
>PRK07473 carboxypeptidase; Provisional
Probab=99.32 E-value=4.6e-12 Score=100.30 Aligned_cols=80 Identities=19% Similarity=0.303 Sum_probs=64.8
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCC-cceeeecccceEEEEEEEeccCCCcC-CCC-CCCHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTE-VFALFNGERTIWQMKIHCPGTPGHGS-LLH-ENTAAEKVN 77 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~-~~~i~~aeKG~~~~~v~v~G~~gHsS-~P~-~~nAi~~~~ 77 (114)
++|||.|+ .|+++++++...+ ++++| +++|+. ...+.+++||..|++|+++|+++|++ .|. +.|||..++
T Consensus 143 ~~dEE~g~-~g~~~~~~~~~~~---~d~~i---v~ep~~~~~~v~~~~~G~~~~~v~~~G~~aHag~~p~~g~nAi~~~~ 215 (376)
T PRK07473 143 TPDEEVGT-PSTRDLIEAEAAR---NKYVL---VPEPGRPDNGVVTGRYAIARFNLEATGRPSHAGATLSEGRSAIREMA 215 (376)
T ss_pred eCCcccCC-ccHHHHHHHhhcc---CCEEE---EeCCCCCCCCEEEECeeeEEEEEEEEeEcCCCCCCcccCcCHHHHHH
Confidence 57999985 7999999853222 57777 466753 24688999999999999999999975 786 699999999
Q ss_pred HHHHHHHHHH
Q psy14393 78 YIMNKFLALR 87 (114)
Q Consensus 78 ~~i~~l~~~~ 87 (114)
+++.+|+++.
T Consensus 216 ~~i~~l~~~~ 225 (376)
T PRK07473 216 RQILAIDAMT 225 (376)
T ss_pred HHHHHHHHhc
Confidence 9999997764
No 31
>PRK08201 hypothetical protein; Provisional
Probab=99.27 E-value=8.8e-12 Score=100.51 Aligned_cols=80 Identities=23% Similarity=0.312 Sum_probs=61.0
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCC----cceeeecccceEEEEEEEeccCC--CcCCCC-C-CCH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTE----VFALFNGERTIWQMKIHCPGTPG--HGSLLH-E-NTA 72 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~----~~~i~~aeKG~~~~~v~v~G~~g--HsS~P~-~-~nA 72 (114)
++|||+|+ .|+.+++++.. ....++++|. ++|+. ...|++++||.+|++|+++|+++ |||.|. . .||
T Consensus 151 ~~dEE~g~-~g~~~~l~~~~-~~~~~d~~ii---~e~~~~~~~~~~i~~g~kG~~~~~l~v~G~~~~~Hs~~~~~~~~nA 225 (456)
T PRK08201 151 EGEEEIGS-PNLDSFVEEEK-DKLAADVVLI---SDTTLLGPGKPAICYGLRGLAALEIDVRGAKGDLHSGLYGGAVPNA 225 (456)
T ss_pred EcccccCC-ccHHHHHHhhH-HhccCCEEEE---eCCCcCCCCCEEEEEecCCeEEEEEEEEeCCCCCccccccCcCCCH
Confidence 57999987 58888886411 1112466663 34431 23589999999999999999999 999875 4 799
Q ss_pred HHHHHHHHHHHHH
Q psy14393 73 AEKVNYIMNKFLA 85 (114)
Q Consensus 73 i~~~~~~i~~l~~ 85 (114)
|..|+++|.+|++
T Consensus 226 i~~~~~~l~~l~~ 238 (456)
T PRK08201 226 LHALVQLLASLHD 238 (456)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999975
No 32
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=99.25 E-value=1.9e-11 Score=94.74 Aligned_cols=73 Identities=26% Similarity=0.342 Sum_probs=59.3
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCCCCCHHHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLHENTAAEKVNYIM 80 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~~~nAi~~~~~~i 80 (114)
++|||.|+ .|+++++++. + .+++| +++|+....+++++||.+|++++++|+++|||.|. ||+..+.+++
T Consensus 109 ~~dEE~g~-~G~~~~~~~~--~---~~~~i---i~ept~~~~i~~~~kG~~~~~v~~~G~~~Hss~~~--~ai~~~~~~~ 177 (336)
T TIGR01902 109 LVDEESSS-KGAREVIDKN--Y---PFYVI---VGEPSGAEGITLGYKGSLQLKIMCEGTPFHSSSAG--NAAELLIDYS 177 (336)
T ss_pred EeCcccCC-ccHHHHHhhc--C---CCEEE---EecCCCCcceeeeeeeEEEEEEEEEecCcccCCCh--hHHHHHHHHH
Confidence 57999975 7999999852 2 23555 35676434688999999999999999999999885 4999999999
Q ss_pred HHHH
Q psy14393 81 NKFL 84 (114)
Q Consensus 81 ~~l~ 84 (114)
.+|.
T Consensus 178 ~~l~ 181 (336)
T TIGR01902 178 KKII 181 (336)
T ss_pred HHHH
Confidence 9886
No 33
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.24 E-value=2.1e-11 Score=96.72 Aligned_cols=47 Identities=19% Similarity=0.286 Sum_probs=41.2
Q ss_pred ceeeecccceEEEEEEEeccCCCcCC-CC--CCCHHHHHHHHHHHHHHHH
Q psy14393 41 FALFNGERTIWQMKIHCPGTPGHGSL-LH--ENTAAEKVNYIMNKFLALR 87 (114)
Q Consensus 41 ~~i~~aeKG~~~~~v~v~G~~gHsS~-P~--~~nAi~~~~~~i~~l~~~~ 87 (114)
..|.+++||..|++|+++|+++|+|. |. +.|||..+++++.+|+++.
T Consensus 206 ~~i~~~~kG~~~~~i~v~G~~aHa~~~p~~~g~nAi~~a~~~i~~l~~~~ 255 (412)
T PRK12892 206 VGVVTGIVGIWQYRITVTGEAGHAGTTPMALRRDAGLAAAEMIAAIDEHF 255 (412)
T ss_pred EEEEEEeccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999875 53 3899999999999997753
No 34
>PLN02280 IAA-amino acid hydrolase
Probab=99.22 E-value=2.9e-11 Score=99.11 Aligned_cols=86 Identities=14% Similarity=0.058 Sum_probs=61.7
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCc--ceeeecccceEEEEEEEeccCCCcCCCC-CCCHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEV--FALFNGERTIWQMKIHCPGTPGHGSLLH-ENTAAEKVN 77 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~--~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~~ 77 (114)
++|||+| .|+++|++++.+++.++.+++--+.++|+.. .......+|..|++|+++|+++|+|+|+ +.|||..++
T Consensus 217 ~pdEE~g--~Ga~~li~~g~~~~~d~~~~~h~~~~~p~g~ig~~~~~~~~G~~~~~I~v~Gk~aHas~P~~G~NAI~~aa 294 (478)
T PLN02280 217 QPAEEAG--NGAKRMIGDGALDDVEAIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAVISGKKGRAGSPHHSVDLILAAS 294 (478)
T ss_pred ccccccc--chHHHHHHCCCCcCCCEEEEEecCCCCCCceeEecccccccceeEEEEEEECcchhcCCcccCcCHHHHHH
Confidence 5899985 4999999987776533333332111233211 1123455699999999999999999996 599999999
Q ss_pred HHHHHHHHHHH
Q psy14393 78 YIMNKFLALRE 88 (114)
Q Consensus 78 ~~i~~l~~~~~ 88 (114)
+++..++++..
T Consensus 295 ~li~~l~~l~~ 305 (478)
T PLN02280 295 AAVISLQGIVS 305 (478)
T ss_pred HHHHHHHHHHh
Confidence 99999877643
No 35
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.22 E-value=4.1e-11 Score=95.24 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=43.3
Q ss_pred cceeeecccceEEEEEEEeccCCCcCC-CC--CCCHHHHHHHHHHHHHHHHH
Q psy14393 40 VFALFNGERTIWQMKIHCPGTPGHGSL-LH--ENTAAEKVNYIMNKFLALRE 88 (114)
Q Consensus 40 ~~~i~~aeKG~~~~~v~v~G~~gHsS~-P~--~~nAi~~~~~~i~~l~~~~~ 88 (114)
...+++++||..|++|+++|+++|+|. |. +.|||..+++++.+|+++..
T Consensus 204 ~~~i~~~~kG~~~~~i~v~G~~aHas~~p~~~G~NAI~~a~~~i~~l~~~~~ 255 (412)
T PRK12893 204 PIGVVTGIQGIRWLEVTVEGQAAHAGTTPMAMRRDALVAAARIILAVERIAA 255 (412)
T ss_pred cEEEEeeecccEEEEEEEEEECCCcCCCcchhccCHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999886 73 59999999999999987654
No 36
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.20 E-value=4.2e-11 Score=95.39 Aligned_cols=48 Identities=8% Similarity=0.056 Sum_probs=42.5
Q ss_pred cceeeecccceEEEEEEEeccCCCcCC-CC-C-CCHHHHHHHHHHHHHHHH
Q psy14393 40 VFALFNGERTIWQMKIHCPGTPGHGSL-LH-E-NTAAEKVNYIMNKFLALR 87 (114)
Q Consensus 40 ~~~i~~aeKG~~~~~v~v~G~~gHsS~-P~-~-~nAi~~~~~~i~~l~~~~ 87 (114)
...+++++||.+|++|+++|+++|+|. |. + .|||..+++++.+|+++.
T Consensus 206 ~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~nAI~~~~~~i~~l~~~~ 256 (414)
T PRK12890 206 PIGVVTAIQGIRRQAVTVEGEANHAGTTPMDLRRDALVAAAELVTAMERRA 256 (414)
T ss_pred ceEEEEeecCcEEEEEEEEEECCCCCcCChhhccCHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999985 73 4 899999999999997765
No 37
>PRK07338 hypothetical protein; Provisional
Probab=99.19 E-value=4.9e-11 Score=94.37 Aligned_cols=80 Identities=20% Similarity=0.165 Sum_probs=62.1
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCC-cceeeecccceEEEEEEEeccCCCcCC-CC-CCCHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTE-VFALFNGERTIWQMKIHCPGTPGHGSL-LH-ENTAAEKVN 77 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~-~~~i~~aeKG~~~~~v~v~G~~gHsS~-P~-~~nAi~~~~ 77 (114)
++|||+|+ .|+++++++.. .. .++++ +.+|+. ...+.+++||.+|++|+++|+++|||. |. +.|||..++
T Consensus 160 ~~dEE~g~-~g~~~~~~~~~-~~--~~~~i---~~ep~~~~~~v~~~~kG~~~~~v~v~G~~aHs~~~p~~g~nAi~~~~ 232 (402)
T PRK07338 160 NPDEEIGS-PASAPLLAELA-RG--KHAAL---TYEPALPDGTLAGARKGSGNFTIVVTGRAAHAGRAFDEGRNAIVAAA 232 (402)
T ss_pred ECCcccCC-hhhHHHHHHHh-cc--CcEEE---EecCCCCCCcEEeecceeEEEEEEEEeEcccCCCCcccCccHHHHHH
Confidence 47999986 69999887522 22 35555 245542 245778999999999999999999997 64 599999999
Q ss_pred HHHHHHHHHH
Q psy14393 78 YIMNKFLALR 87 (114)
Q Consensus 78 ~~i~~l~~~~ 87 (114)
+++.+|+++.
T Consensus 233 ~~i~~l~~l~ 242 (402)
T PRK07338 233 ELALALHALN 242 (402)
T ss_pred HHHHHHHhhh
Confidence 9999997654
No 38
>PRK07907 hypothetical protein; Provisional
Probab=99.17 E-value=5.4e-11 Score=95.89 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=61.0
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCc----ceeeecccceEEEEEEEe--ccCCCcCCCC--CCCH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEV----FALFNGERTIWQMKIHCP--GTPGHGSLLH--ENTA 72 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~----~~i~~aeKG~~~~~v~v~--G~~gHsS~P~--~~nA 72 (114)
++|||+|+ .|++++++... ...+++++|. ++|+.. -.+.+++||.+|++++++ |+++|||.|. ..||
T Consensus 152 ~~dEE~g~-~g~~~~l~~~~-~~~~~d~~iv---~E~~~~~~~~p~i~~~~kG~~~~~l~v~~~G~~~Hss~~~~~~~nA 226 (449)
T PRK07907 152 EGEEEMGS-PSLERLLAEHP-DLLAADVIVI---ADSGNWSVGVPALTTSLRGNADVVVTVRTLEHAVHSGQFGGAAPDA 226 (449)
T ss_pred EcCcccCC-ccHHHHHHhch-HhhcCCEEEE---ecCCcCCCCCeEEEEecCCcEEEEEEEEECCCCCCCccccccCCCH
Confidence 47999987 69999998521 1122566663 344321 147899999999999999 9999999863 5899
Q ss_pred HHHHHHHHHHHHHH
Q psy14393 73 AEKVNYIMNKFLAL 86 (114)
Q Consensus 73 i~~~~~~i~~l~~~ 86 (114)
|..++++|.+|.+.
T Consensus 227 i~~~~~~l~~l~~~ 240 (449)
T PRK07907 227 LTALVRLLATLHDE 240 (449)
T ss_pred HHHHHHHHHhhCCC
Confidence 99999999999753
No 39
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.13 E-value=1.4e-10 Score=92.61 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=62.1
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCc-ceeeecccceEEEEEEEeccCCCc-CCCC-CCCHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEV-FALFNGERTIWQMKIHCPGTPGHG-SLLH-ENTAAEKVN 77 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~-~~i~~aeKG~~~~~v~v~G~~gHs-S~P~-~~nAi~~~~ 77 (114)
++|||.|+ .|+++++++ ...+ ++++++ .+|+.. ..+.+++||.+|++++++|+++|| +.|. +.|||..++
T Consensus 167 ~~dEE~g~-~G~~~~~~~-~~~~--~d~~i~---~ep~~~~~~v~~~~~G~~~~~v~v~G~~~Hsg~~p~~g~nAi~~~~ 239 (410)
T PRK06133 167 NPDEETGS-PGSRELIAE-LAAQ--HDVVFS---CEPGRAKDALTLATSGIATALLEVKGKASHAGAAPELGRNALYELA 239 (410)
T ss_pred ECCcccCC-ccHHHHHHH-Hhcc--CCEEEE---eCCCCCCCCEEEeccceEEEEEEEEeeccccCCCcccCcCHHHHHH
Confidence 48999985 699999975 2222 577774 345432 357899999999999999999996 5785 599999999
Q ss_pred HHHHHHHHH
Q psy14393 78 YIMNKFLAL 86 (114)
Q Consensus 78 ~~i~~l~~~ 86 (114)
+++..|+++
T Consensus 240 ~~i~~l~~~ 248 (410)
T PRK06133 240 HQLLQLRDL 248 (410)
T ss_pred HHHHHHHhc
Confidence 999988664
No 40
>PLN02693 IAA-amino acid hydrolase
Probab=99.13 E-value=1.3e-10 Score=94.18 Aligned_cols=82 Identities=17% Similarity=0.073 Sum_probs=60.4
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCc-cee----eecccceEEEEEEEeccCCCcCCCC-CCCHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEV-FAL----FNGERTIWQMKIHCPGTPGHGSLLH-ENTAAE 74 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~-~~i----~~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~ 74 (114)
++||| ++ .|++.|++++.+++ +++++.|= .+|... -.+ ...+||..|++++++|+++|+|.|+ +.|||.
T Consensus 167 ~pdEE-~~-~Ga~~~i~~g~~~~--~~~iig~h-~~p~~~~g~~~~~~g~~~~G~~~~~i~v~Gk~aHaa~P~~G~nAI~ 241 (437)
T PLN02693 167 QPAEE-GL-SGAKKMREEGALKN--VEAIFGIH-LSPRTPFGKAASRAGSFMAGAGVFEAVITGKGGHAAIPQHTIDPVV 241 (437)
T ss_pred EEccc-ch-hhHHHHHHCCCCCC--CCEEEEEe-cCCCCCCeeEEeccCcccccceEEEEEEEcccccCCCCCCCcCHHH
Confidence 47999 43 59999998876664 45666331 122111 112 1236899999999999999999996 599999
Q ss_pred HHHHHHHHHHHHH
Q psy14393 75 KVNYIMNKFLALR 87 (114)
Q Consensus 75 ~~~~~i~~l~~~~ 87 (114)
.+++++.+|+++.
T Consensus 242 ~aa~~i~~l~~~~ 254 (437)
T PLN02693 242 AASSIVLSLQQLV 254 (437)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 41
>PRK09104 hypothetical protein; Validated
Probab=99.13 E-value=1.4e-10 Score=93.77 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=59.8
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEe-cCcccCCCcceeeecccceEEEEEEEec--cCCCcCCC-C-CCCHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALD-EGIASPTEVFALFNGERTIWQMKIHCPG--TPGHGSLL-H-ENTAAEK 75 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~id-EG~~~~~~~~~i~~aeKG~~~~~v~v~G--~~gHsS~P-~-~~nAi~~ 75 (114)
++|||+|+ .|+..++++.. ..+.++++|. |+.........|.+++||.+|++++++| +++|||+| . +.|||..
T Consensus 159 ~~dEE~g~-~g~~~~l~~~~-~~~~~d~~iv~E~~~~~~~~~~i~~~~kG~~~~~l~v~g~~~~~Hss~~~~~g~nai~~ 236 (464)
T PRK09104 159 EGEEESGS-PSLVPFLEANA-EELKADVALVCDTGMWDRETPAITTSLRGLVGEEVTITAADRDLHSGLFGGAAANPIRV 236 (464)
T ss_pred ECccccCC-ccHHHHHHhhH-HhcCCCEEEEeCCCCCCCCCeEEEeecCCeEEEEEEEEeCCCCccccccCCccCCHHHH
Confidence 47999987 57777766411 1123577774 3211111123688999999999999999 78999985 3 5999999
Q ss_pred HHHHHHHHHH
Q psy14393 76 VNYIMNKFLA 85 (114)
Q Consensus 76 ~~~~i~~l~~ 85 (114)
|++++.+|.+
T Consensus 237 ~~~~l~~l~~ 246 (464)
T PRK09104 237 LTRILAGLHD 246 (464)
T ss_pred HHHHHHhccC
Confidence 9999999865
No 42
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.11 E-value=2.5e-10 Score=90.80 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=42.4
Q ss_pred ceeeecccceEEEEEEEeccCCCcCCCC---CCCHHHHHHHHHHHHHHHHH
Q psy14393 41 FALFNGERTIWQMKIHCPGTPGHGSLLH---ENTAAEKVNYIMNKFLALRE 88 (114)
Q Consensus 41 ~~i~~aeKG~~~~~v~v~G~~gHsS~P~---~~nAi~~~~~~i~~l~~~~~ 88 (114)
+.|++++||.+|++|+++|+++|+|.|+ +.|||..+++++.+|+++..
T Consensus 198 ~~v~~~~~G~~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l~~ 248 (401)
T TIGR01879 198 IGVVNAIAGQRWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQVEEKAK 248 (401)
T ss_pred EEEEEEecCcEEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999998653 48999999999999977654
No 43
>PRK13381 peptidase T; Provisional
Probab=99.10 E-value=1.5e-10 Score=92.04 Aligned_cols=78 Identities=17% Similarity=0.160 Sum_probs=59.7
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCC-CC-CCCHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSL-LH-ENTAAEKVNY 78 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~-P~-~~nAi~~~~~ 78 (114)
++|||.|+ .|+++++.+ .++ .+..++++ +++|. .+.+++||..|++|+++|+++|+|. |. +.|||..+++
T Consensus 168 ~~dEE~g~-~G~~~~~~~-~~~-~d~~~~~~--~~~~~---~i~~~~~G~~~~~v~v~Gk~aHa~~~p~~g~NAI~~a~~ 239 (404)
T PRK13381 168 VPDEEIGL-RGAKALDLA-RFP-VDFAYTID--CCELG---EVVYENFNAASAEITITGVTAHPMSAKGVLVNPILMAND 239 (404)
T ss_pred Eccccccc-ccHHHHHHh-cCC-CCEEEEec--CCCcc---eEEEecCcceEEEEEEEeEecCCCCCcccCcCHHHHHHH
Confidence 47999975 799999764 333 12344454 33443 4678899999999999999999875 65 5999999999
Q ss_pred HHHHHHHH
Q psy14393 79 IMNKFLAL 86 (114)
Q Consensus 79 ~i~~l~~~ 86 (114)
++.+|+++
T Consensus 240 ~i~~l~~~ 247 (404)
T PRK13381 240 FISHFPRQ 247 (404)
T ss_pred HHHhCCcc
Confidence 99988665
No 44
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.07 E-value=2.4e-10 Score=92.69 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=37.0
Q ss_pred ecccceE-----EEEEEEeccCCCcCCCC-CCCHHHHHHHHHHHHHH
Q psy14393 45 NGERTIW-----QMKIHCPGTPGHGSLLH-ENTAAEKVNYIMNKFLA 85 (114)
Q Consensus 45 ~aeKG~~-----~~~v~v~G~~gHsS~P~-~~nAi~~~~~~i~~l~~ 85 (114)
.++||.+ |++|+++|+++|||.|+ +.|||..|+++|.+|++
T Consensus 245 ~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i~~l~~ 291 (466)
T PRK07318 245 NGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFLNQLNL 291 (466)
T ss_pred cCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHHHhccC
Confidence 3789877 89999999999999996 59999999999999864
No 45
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.05 E-value=1.1e-09 Score=88.81 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=33.9
Q ss_pred ceE-----EEEEEEeccCCCcCCCC-CCCHHHHHHHHHHHHH
Q psy14393 49 TIW-----QMKIHCPGTPGHGSLLH-ENTAAEKVNYIMNKFL 84 (114)
Q Consensus 49 G~~-----~~~v~v~G~~gHsS~P~-~~nAi~~~~~~i~~l~ 84 (114)
|.+ |++|+++|+++|||.|. +.|||.+|++++..+.
T Consensus 236 g~~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~l~ 277 (447)
T TIGR01887 236 GSFEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLAQLN 277 (447)
T ss_pred eEEEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHHhcc
Confidence 888 89999999999999996 6999999999999986
No 46
>PRK07079 hypothetical protein; Provisional
Probab=99.05 E-value=6.8e-10 Score=90.01 Aligned_cols=83 Identities=14% Similarity=0.228 Sum_probs=58.9
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEe-cCcccCCCcceeeecccceEEEEEEEecc--CCCcCCCCC--CCHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALD-EGIASPTEVFALFNGERTIWQMKIHCPGT--PGHGSLLHE--NTAAEK 75 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~id-EG~~~~~~~~~i~~aeKG~~~~~v~v~G~--~gHsS~P~~--~nAi~~ 75 (114)
++|||+|+ .|+++++++.. ....++++|. |+.....+...+++++||.+|++|+++|+ +.||+.+.+ .||+..
T Consensus 159 ~~dEE~g~-~G~~~l~~~~~-~~~~~d~~iv~e~~~~~~~~~~i~~g~kG~~~~~v~v~G~~~~~hs~~~~g~~~nai~~ 236 (469)
T PRK07079 159 EMGEEIGS-PGLAEVCRQHR-EALAADVLIASDGPRLSAERPTLFLGSRGAVNFRLRVNLRDGAHHSGNWGGLLRNPGTV 236 (469)
T ss_pred ECccccCC-ccHHHHHHHhH-HhcCCCEEEEeCCCccCCCCeEEEEecceEEEEEEEEeeCCCCCCCCccccccCCHHHH
Confidence 48999986 69999998521 1122577775 22111112245889999999999999998 456664433 799999
Q ss_pred HHHHHHHHHH
Q psy14393 76 VNYIMNKFLA 85 (114)
Q Consensus 76 ~~~~i~~l~~ 85 (114)
++++|.++.+
T Consensus 237 l~~ai~~l~~ 246 (469)
T PRK07079 237 LAHAIASLVD 246 (469)
T ss_pred HHHHHHHhCC
Confidence 9999999854
No 47
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=99.03 E-value=8.2e-10 Score=89.87 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=34.1
Q ss_pred ecccceE---------EEEEEEeccCCCcCCCC-CCCHHHHHHHHHHHH
Q psy14393 45 NGERTIW---------QMKIHCPGTPGHGSLLH-ENTAAEKVNYIMNKF 83 (114)
Q Consensus 45 ~aeKG~~---------~~~v~v~G~~gHsS~P~-~~nAi~~~~~~i~~l 83 (114)
.++||.+ |++|+++|+++|||+|+ +.|||..|+++|..+
T Consensus 240 ~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~~~~l~~~ 288 (466)
T TIGR01886 240 LADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFLALFLNQY 288 (466)
T ss_pred HhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHHHHHHHhc
Confidence 3577765 89999999999999996 699999999999873
No 48
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=98.99 E-value=1.7e-09 Score=85.84 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=52.3
Q ss_pred CCccCcCcccchHHhhccccc-ccCCeeEEEecCcccC----CCcceeeecccceEEEEEEEeccCCCcCC--CC-CCCH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAF-KKMNVGCALDEGIASP----TEVFALFNGERTIWQMKIHCPGTPGHGSL--LH-ENTA 72 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~-~~~~~~~~idEG~~~~----~~~~~i~~aeKG~~~~~v~v~G~~gHsS~--P~-~~nA 72 (114)
++|||+|+ .|+..++....- ....++++|. ++| .....+.+++||.+|++++++|+++|+|. |. +.|+
T Consensus 147 ~~dEE~g~-~~~~~~~~~~~~~~~~~~d~~i~---~E~~~~~~~~~~~~~~~kG~~~~~v~v~G~~~Has~~~p~~~~n~ 222 (409)
T COG0624 147 TADEESGG-AGGKAYLEEGEEALGIRPDYEIV---GEPTLESEGGDIIVVGHKGSLWLEVTVKGKAGHASTTPPDLGRNP 222 (409)
T ss_pred EeccccCC-cchHHHHHhcchhhccCCCEEEe---CCCCCcccCCCeEEEcceeEEEEEEEEEeecccccccCCcccccH
Confidence 47999998 566666654221 1123566663 344 23456677999999999999999999999 63 5995
Q ss_pred HHHHHHHHHH
Q psy14393 73 AEKVNYIMNK 82 (114)
Q Consensus 73 i~~~~~~i~~ 82 (114)
+..+.+++.+
T Consensus 223 i~~a~~~~~~ 232 (409)
T COG0624 223 IHAAIEALAE 232 (409)
T ss_pred HHHHHHHHHH
Confidence 5444444433
No 49
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=98.99 E-value=1.8e-09 Score=86.29 Aligned_cols=49 Identities=10% Similarity=0.075 Sum_probs=42.8
Q ss_pred cceeeecccceEEEEEEEeccCCCcC-CCC--CCCHHHHHHHHHHHHHHHHH
Q psy14393 40 VFALFNGERTIWQMKIHCPGTPGHGS-LLH--ENTAAEKVNYIMNKFLALRE 88 (114)
Q Consensus 40 ~~~i~~aeKG~~~~~v~v~G~~gHsS-~P~--~~nAi~~~~~~i~~l~~~~~ 88 (114)
...|++++||..|++|+++|+++|+| .|. +.|||..+++++.+|+++..
T Consensus 204 ~~~iv~~~kG~~~~~v~v~Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~~~~~ 255 (414)
T PRK12891 204 TIGVVTAGQGQRWYEVTLTGVDAHAGTTPMAFRRDALVGAARMIAFLDALGR 255 (414)
T ss_pred cEEEEeeccCcEEEEEEEEeECCCCCCCCcccccCHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999988 564 49999999999999977643
No 50
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=98.97 E-value=1.5e-09 Score=84.64 Aligned_cols=78 Identities=22% Similarity=0.263 Sum_probs=58.4
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCc-CCCC-CCCHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHG-SLLH-ENTAAEKVNY 78 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHs-S~P~-~~nAi~~~~~ 78 (114)
++|||.|+ .|+++|.+.. +. .++.+++++ +.+...+++++||.+|++++++|+++|+ +.|+ +.||+..+++
T Consensus 130 ~~~EE~g~-~G~~~~~~~~-~~-~~~~~~~~~----~~~~~~i~~~~~g~~~~~i~~~G~~~Ha~~~p~~g~nAi~~~~~ 202 (361)
T TIGR01883 130 TVKEELGL-IGMRLFDESK-IT-AAYGYCLDA----PGEVGNIQLAAPTQVKVDATIAGKDAHAGLVPEDGISAISVARM 202 (361)
T ss_pred EcccccCc-hhHhHhChhh-cC-cceeEEEeC----CCCcceEEecCCceEEEEEEEEeeecCCCCCcccCcCHHHHHHH
Confidence 57999874 7999888632 22 123445542 1123468899999999999999999998 5786 5999999999
Q ss_pred HHHHHHH
Q psy14393 79 IMNKFLA 85 (114)
Q Consensus 79 ~i~~l~~ 85 (114)
++..|..
T Consensus 203 ~i~~l~~ 209 (361)
T TIGR01883 203 AIHAMRL 209 (361)
T ss_pred HHHhccc
Confidence 9988854
No 51
>PRK08596 acetylornithine deacetylase; Validated
Probab=98.96 E-value=4e-09 Score=84.44 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=61.6
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccC----------CCcCCCC-C
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTP----------GHGSLLH-E 69 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~----------gHsS~P~-~ 69 (114)
++|||.|+ .|++++++++ +. ++++|. ++|+. .. .+++||.++++++++|.+ +|++.|. +
T Consensus 149 ~~dEE~g~-~G~~~~~~~~-~~---~d~~i~---~ep~~-~~-~~~~~G~~~~~~~v~g~~~~~~~~~~~~~H~~~p~~G 218 (421)
T PRK08596 149 VIGEEVGE-AGTLQCCERG-YD---ADFAVV---VDTSD-LH-MQGQGGVITGWITVKSPQTFHDGTRRQMIHAGGGLFG 218 (421)
T ss_pred EeccccCC-cCHHHHHhcC-CC---CCEEEE---CCCCC-Cc-cccccceeeEEEEEEeecccccccccccccccCCccC
Confidence 47999986 6999999863 32 577773 56643 33 489999998888888764 7999995 6
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q psy14393 70 NTAAEKVNYIMNKFLALREE 89 (114)
Q Consensus 70 ~nAi~~~~~~i~~l~~~~~~ 89 (114)
.|||..++++|.+|+++...
T Consensus 219 ~nai~~~~~~i~~l~~~~~~ 238 (421)
T PRK08596 219 ASAIEKMMKIIQSLQELERH 238 (421)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887543
No 52
>PRK07205 hypothetical protein; Provisional
Probab=98.95 E-value=2e-09 Score=86.66 Aligned_cols=34 Identities=9% Similarity=-0.016 Sum_probs=30.6
Q ss_pred EEEEEeccCCCcCCCC-CCCHHHHHHHHHHHHHHH
Q psy14393 53 MKIHCPGTPGHGSLLH-ENTAAEKVNYIMNKFLAL 86 (114)
Q Consensus 53 ~~v~v~G~~gHsS~P~-~~nAi~~~~~~i~~l~~~ 86 (114)
.+++++|+++|||.|+ +.|||..+++++.+++++
T Consensus 240 ~~v~v~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~ 274 (444)
T PRK07205 240 NEVTVLGKSVHAKDAPQGINAVIRLAKALVVLEPH 274 (444)
T ss_pred cEEEEEeEEcccCCCccCcCHHHHHHHHHHhccHH
Confidence 3999999999999996 599999999999998764
No 53
>PRK06156 hypothetical protein; Provisional
Probab=98.89 E-value=3.3e-09 Score=87.42 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=32.0
Q ss_pred EEEEEEeccCCCcCCCC-CCCHHHHHHHHHHHHHH
Q psy14393 52 QMKIHCPGTPGHGSLLH-ENTAAEKVNYIMNKFLA 85 (114)
Q Consensus 52 ~~~v~v~G~~gHsS~P~-~~nAi~~~~~~i~~l~~ 85 (114)
|++|+++|+++|||.|+ +.|||.++++++.+|++
T Consensus 300 ~~~I~v~Gk~aHsS~P~~G~NAI~~aa~ii~~L~~ 334 (520)
T PRK06156 300 DVTITVTGKSAHSSTPESGVNPVTRLALFLQSLDG 334 (520)
T ss_pred eEEEEEEeEECCCCCCCCCccHHHHHHHHHHhccc
Confidence 99999999999999996 59999999999999875
No 54
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=98.82 E-value=3.1e-09 Score=69.75 Aligned_cols=45 Identities=27% Similarity=0.316 Sum_probs=40.9
Q ss_pred ecccceEEEEEEEeccCCCcCCCC-CCCHHHHHHHHHHHHHHHHHH
Q psy14393 45 NGERTIWQMKIHCPGTPGHGSLLH-ENTAAEKVNYIMNKFLALREE 89 (114)
Q Consensus 45 ~aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~~~~i~~l~~~~~~ 89 (114)
+++||.+|++++++|+++|+|.|. +.||+..+++++..|.++..+
T Consensus 1 ~g~~G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~ 46 (111)
T PF07687_consen 1 IGHRGVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFE 46 (111)
T ss_dssp EEEEEEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCH
T ss_pred CcCCCEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcc
Confidence 589999999999999999999885 599999999999999887654
No 55
>PRK05469 peptidase T; Provisional
Probab=98.82 E-value=1.4e-08 Score=80.82 Aligned_cols=77 Identities=22% Similarity=0.151 Sum_probs=57.1
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCC-CC-CCCHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSL-LH-ENTAAEKVNY 78 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~-P~-~~nAi~~~~~ 78 (114)
++|||+| .|+++++.. .+.. .+.++++ +++.. .+.+.++|..+++|+++|+++|+|. |. +.|||..+++
T Consensus 171 ~~dEE~g--~Ga~~~~~~-~~~~-~~~~~~~---~~~~g--~~~~~~~g~~~~~i~v~Gk~~Ha~~~p~~g~nAi~~~~~ 241 (408)
T PRK05469 171 TPDEEIG--RGADKFDVE-KFGA-DFAYTVD---GGPLG--ELEYENFNAASAKITIHGVNVHPGTAKGKMVNALLLAAD 241 (408)
T ss_pred ecccccC--CCHHHhhhh-hcCC-cEEEEec---CCCcc--eEEeccCceeEEEEEEeeecCCCCCCcccccCHHHHHHH
Confidence 5799986 599988743 2221 2455564 33432 3677899999999999999999875 65 5999999999
Q ss_pred HHHHHHHH
Q psy14393 79 IMNKFLAL 86 (114)
Q Consensus 79 ~i~~l~~~ 86 (114)
++..|+++
T Consensus 242 ~i~~l~~~ 249 (408)
T PRK05469 242 FHAMLPAD 249 (408)
T ss_pred HHHhCCCC
Confidence 99887543
No 56
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=98.76 E-value=7.4e-09 Score=82.78 Aligned_cols=76 Identities=24% Similarity=0.226 Sum_probs=56.9
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCC--CCCHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLH--ENTAAEKVNY 78 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~--~~nAi~~~~~ 78 (114)
++|||+| .|+++|..+ .++ ..++++++ ++|+. .+.+..+|..|++|+++|+++|+|.+. ..|||..+.+
T Consensus 173 t~dEE~g--~Ga~~l~~~-~~~-~~~~~~i~---gep~g--~i~~~~~g~~~~~I~v~Gk~aHa~~~~~~g~nAi~~a~~ 243 (410)
T TIGR01882 173 TPDEEIG--RGAHKFDVK-DFN-ADFAYTVD---GGPLG--ELEYETFSAAAAKITIQGNNVHPGTAKGKMINAAQIAID 243 (410)
T ss_pred ECcccCC--cCcchhhhh-hcC-ccEEEEeC---CCCCC--eEEEccccceEEEEEEEEEecCcccChHHHHHHHHHHHH
Confidence 5899986 399888653 222 23567775 45653 356777999999999999999999984 4999999888
Q ss_pred HHHHHHH
Q psy14393 79 IMNKFLA 85 (114)
Q Consensus 79 ~i~~l~~ 85 (114)
++..+..
T Consensus 244 ~~~~l~~ 250 (410)
T TIGR01882 244 LHNLLPE 250 (410)
T ss_pred HHHhcCC
Confidence 8766543
No 57
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=98.63 E-value=9e-08 Score=77.97 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=53.3
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEec-C-----cccCCCc-ce------eeecccceEEEEEEEec-cCCCcCC
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDE-G-----IASPTEV-FA------LFNGERTIWQMKIHCPG-TPGHGSL 66 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idE-G-----~~~~~~~-~~------i~~aeKG~~~~~v~v~G-~~gHsS~ 66 (114)
++|||.| +.|+++|... .++. +..+++|- + .++++.. .. +...+||..|++++++| +++||+.
T Consensus 136 ~~dEE~g-~~Gs~~l~~~-~~~~-~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~~i~~~G~~~~Hsg~ 212 (477)
T TIGR01893 136 TVDEETG-MDGALGLDEN-WLSG-KILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGYQISLKGLKGGHSGA 212 (477)
T ss_pred EeccccC-chhhhhcChh-hcCC-cEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEEEEEEeCcCCCcCcc
Confidence 5799986 5799999763 2221 11111110 0 1122211 11 11127999999999999 9999975
Q ss_pred -CC-C-CCHHHHHHHHHHHHHHH
Q psy14393 67 -LH-E-NTAAEKVNYIMNKFLAL 86 (114)
Q Consensus 67 -P~-~-~nAi~~~~~~i~~l~~~ 86 (114)
|. + .|||..++++|.++.+.
T Consensus 213 ~p~~~r~nAi~~aa~~i~~l~~~ 235 (477)
T TIGR01893 213 DIHKGRANANKLMARVLNELKEN 235 (477)
T ss_pred ccCCCCcCHHHHHHHHHHhhhhc
Confidence 63 4 69999999999998654
No 58
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=98.59 E-value=1.5e-07 Score=77.45 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=55.3
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecc------------------cceEEEEEEEec-cC
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGE------------------RTIWQMKIHCPG-TP 61 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~ae------------------KG~~~~~v~v~G-~~ 61 (114)
++|||+| ..|++++.. ..++ ++++|+ .+|.....+++++ ||..+++|+++| ++
T Consensus 142 t~dEE~G-~~ga~~l~~-~~~~---~~~~i~---~e~~~~g~l~~g~~G~~~~~~~~~~~r~~~~~g~~~~~i~v~Gl~g 213 (485)
T PRK15026 142 TMTEEAG-MDGAFGLQS-NWLQ---ADILIN---TDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKG 213 (485)
T ss_pred EcccccC-cHhHHHhhh-ccCC---cCEEEE---eCCCCCCeEEEeCCCcceEEEEEEEEEEecCCCceEEEEEEECCCC
Confidence 5899997 479999865 2333 577775 3443333454444 677899999999 99
Q ss_pred CCcCC-CC-CC-CHHHHHHHHHHHH
Q psy14393 62 GHGSL-LH-EN-TAAEKVNYIMNKF 83 (114)
Q Consensus 62 gHsS~-P~-~~-nAi~~~~~~i~~l 83 (114)
|||.. |. +. |||..|+++|.++
T Consensus 214 gHsG~~i~~g~~nAi~~la~~l~~~ 238 (485)
T PRK15026 214 GHSGGEIHVGLGNANKLLVRFLAGH 238 (485)
T ss_pred cCChHHHCCCCccHHHHHHHHHHHh
Confidence 99994 64 55 9999999999875
No 59
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=98.34 E-value=2.8e-06 Score=68.52 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=61.3
Q ss_pred CccCcCcccchHHhhcccccccCCeeEEEecC-ccc-CCCcceeee--cccceEEEEEEEeccCCCcCCCC-CCCHHHHH
Q psy14393 2 LDEEIGGSQGMSLFVTTDAFKKMNVGCALDEG-IAS-PTEVFALFN--GERTIWQMKIHCPGTPGHGSLLH-ENTAAEKV 76 (114)
Q Consensus 2 ~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG-~~~-~~~~~~i~~--aeKG~~~~~v~v~G~~gHsS~P~-~~nAi~~~ 76 (114)
+-||.++ |+..|++.+.|++. +|+++.-= .+. |.....+.. --=..-.|+++++|++||+|.|+ ..||+..+
T Consensus 135 PAEE~~~--Ga~~mi~~G~~~~~-vD~v~g~H~~p~~~~g~v~~~~G~~~aa~d~~~i~~~GkggH~a~Ph~~~d~i~aa 211 (392)
T COG1473 135 PAEEGGG--GAKAMIEDGVFDDF-VDAVFGLHPGPGLPVGTVALRPGALMAAADEFEITFKGKGGHAAAPHLGIDALVAA 211 (392)
T ss_pred ccccccc--cHHHHHhcCCcccc-ccEEEEecCCCCCCCceEEeecccceeecceEEEEEEeCCcccCCcccccCHHHHH
Confidence 5699875 89999999888864 66666200 011 222111111 12235678999999999999997 49999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14393 77 NYIMNKFLALREEEKN 92 (114)
Q Consensus 77 ~~~i~~l~~~~~~~~~ 92 (114)
+.++..|+....+..+
T Consensus 212 ~~~v~~lq~ivsr~~~ 227 (392)
T COG1473 212 AQLVTALQTIVSRNVD 227 (392)
T ss_pred HHHHHHHHHHHhcccC
Confidence 9999999876665544
No 60
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=98.29 E-value=2e-06 Score=68.99 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=48.4
Q ss_pred cceeeecccceEEEEEEEeccCCCcCCCC-C--CCHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCcccee
Q psy14393 40 VFALFNGERTIWQMKIHCPGTPGHGSLLH-E--NTAAEKVNYIMNKFLALREEEKNKLKANKNLTIGDVT 106 (114)
Q Consensus 40 ~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~--~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 106 (114)
...|.+++||..|++|+++|+++|+|.|+ + .|||..+++++..+.+...+ .....+.++|.++
T Consensus 198 ~igiv~~~~G~~~~~v~v~GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~~~----~~~~~~~tvG~I~ 263 (406)
T TIGR03176 198 SIGVVNAIVGQRRYTVNLKGEANHAGTTPMSYRRDTVYAFSRICTQSIERAKE----IGDPLVLTFGKVE 263 (406)
T ss_pred eEEEEeecccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh----cCCCcEEEEEEEE
Confidence 35678999999999999999999999874 3 89999999999998664321 1222255666554
No 61
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=98.10 E-value=6e-06 Score=69.46 Aligned_cols=48 Identities=10% Similarity=-0.028 Sum_probs=42.1
Q ss_pred cceeeecccceEEEEEEEeccCCCcCCCC---CCCHHHHHHHHHHHHHHHH
Q psy14393 40 VFALFNGERTIWQMKIHCPGTPGHGSLLH---ENTAAEKVNYIMNKFLALR 87 (114)
Q Consensus 40 ~~~i~~aeKG~~~~~v~v~G~~gHsS~P~---~~nAi~~~~~~i~~l~~~~ 87 (114)
...|.+++||..|++|+++|+++|+|.|+ +.|||..+++++..++++.
T Consensus 382 ~igvV~g~~G~~~~~Itv~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~ 432 (591)
T PRK13799 382 PLGIVTSIAGSARYICEFIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRA 432 (591)
T ss_pred cEEEEeeeccceEEEEEEEEECCCCCCCChhhchhHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999753 4899999999999997653
No 62
>PRK08554 peptidase; Reviewed
Probab=97.93 E-value=1.2e-05 Score=65.28 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=46.8
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEE-------ecc-------------
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHC-------PGT------------- 60 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v-------~G~------------- 60 (114)
++|||+|+. +..++++.-.-....++++|+ ++|+....+..++||. ++++++ +|+
T Consensus 132 ~~dEE~g~~-~~~~~~~~~~~~~~~~~~~iv---~Ept~~~~~~~~~kg~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 206 (438)
T PRK08554 132 TGDEEIGGA-MAMHIAEKLREEGKLPKYMIN---ADGIGMKPIIRRRKGF-GVTIRVPSEKVKVKGKLREQTFEIRTPVV 206 (438)
T ss_pred EcccccCcc-ccHHHHHHHHhcCCCCCEEEE---eCCCCCcchhhcCCce-EEEEEecccccccccceeeeeeceeeccc
Confidence 479999874 444665520001123678884 6776433343455554 466653 444
Q ss_pred -CCCcCCCC-C--CCHHHHHHHHHHHHH
Q psy14393 61 -PGHGSLLH-E--NTAAEKVNYIMNKFL 84 (114)
Q Consensus 61 -~gHsS~P~-~--~nAi~~~~~~i~~l~ 84 (114)
++|+|.|. + .+|+..+++++.++.
T Consensus 207 ~~~Ha~~~~~g~~~~~i~~~~~~~~~~~ 234 (438)
T PRK08554 207 ETRHAAYFLPGVDTHPLIAASHFLRESN 234 (438)
T ss_pred CccccccccCCcCchHHHHHHHHHhhcC
Confidence 49999873 3 556888887776654
No 63
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=97.88 E-value=2.8e-05 Score=65.39 Aligned_cols=46 Identities=11% Similarity=-0.014 Sum_probs=41.1
Q ss_pred ceeeecccceEEEEEEEeccCCCcCCCC---CCCHHHHHHHHHHHHHHH
Q psy14393 41 FALFNGERTIWQMKIHCPGTPGHGSLLH---ENTAAEKVNYIMNKFLAL 86 (114)
Q Consensus 41 ~~i~~aeKG~~~~~v~v~G~~gHsS~P~---~~nAi~~~~~~i~~l~~~ 86 (114)
..|.+++||..|++|+++|+++|+|.|+ +.|||..+++++..++++
T Consensus 383 ~gvV~~~~G~~~~~v~v~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~ 431 (591)
T PRK13590 383 LGIVTSINGSVRYVGEMIGMASHAGTTPMDRRRDAAAAVAELALYVEQR 431 (591)
T ss_pred eEEEeeeeccEEEEEEEEeECCCCCCCCchhcccHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999754 489999999999988664
No 64
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=92.93 E-value=0.083 Score=43.23 Aligned_cols=77 Identities=21% Similarity=0.176 Sum_probs=56.5
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCCC--CCHHHHHHH
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLHE--NTAAEKVNY 78 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~~--~nAi~~~~~ 78 (114)
++|||.|+ .|+..+.-. .|.. +..+.+| | ++ ...|.+.-.+...+++++.|+..|.....+ .||+..+.+
T Consensus 176 s~~Ee~g~-rg~~~~~~a-~f~a-~~ay~iD-G--g~--~g~i~~ea~~~~~~~~~~~g~~~h~~~a~~~~i~a~~~a~e 247 (414)
T COG2195 176 SPDEEIGG-RGAANKDVA-RFLA-DFAYTLD-G--GP--VGEIPREAFNAAAVRATIVGPNVHPGSAKGKMINALLLAAE 247 (414)
T ss_pred cchHHhhh-hhhhhccHH-hhhc-ceeEecC-C--Cc--cCeeeeeccchheeeeeeeccCcCccchHHHHhhHHHhhhh
Confidence 57999986 688876543 3331 2567777 2 33 246778889999999999999999988743 889888777
Q ss_pred HHHHHHH
Q psy14393 79 IMNKFLA 85 (114)
Q Consensus 79 ~i~~l~~ 85 (114)
+...+..
T Consensus 248 ~~~~~~~ 254 (414)
T COG2195 248 FILELPL 254 (414)
T ss_pred hhhcCCc
Confidence 7776643
No 65
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=89.87 E-value=1.1 Score=37.43 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=58.1
Q ss_pred CCccCcCcccchHHhhcc-cccc-c--CCeeEEEecCcccCC----CcceeeecccceEEEEEEEeccCCCcCCCC-CCC
Q psy14393 1 MLDEEIGGSQGMSLFVTT-DAFK-K--MNVGCALDEGIASPT----EVFALFNGERTIWQMKIHCPGTPGHGSLLH-ENT 71 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~-~~~~-~--~~~~~~idEG~~~~~----~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~-~~n 71 (114)
++|||+-+ .|++..+.. +.++ + +.+-.+||=-...|. ....++++--|.+---.-|.|...|.+.|. +.|
T Consensus 170 ~pdEE~~s-~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryvYtGtiGKLLp~f~vvG~etHvG~~f~Gvn 248 (553)
T COG4187 170 VPDEEVES-RGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYVYTGTIGKLLPFFFVVGCETHVGYPFEGVN 248 (553)
T ss_pred ccchhhhc-ccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEEEeccchhhcceeEEEeeccccCCcccCCC
Confidence 68999975 799877753 1221 1 123445541111111 123578999999999999999999999995 799
Q ss_pred HHHHHHHHHHHHH
Q psy14393 72 AAEKVNYIMNKFL 84 (114)
Q Consensus 72 Ai~~~~~~i~~l~ 84 (114)
|-..++.+..+|+
T Consensus 249 an~maSei~~~le 261 (553)
T COG4187 249 ANFMASEITRRLE 261 (553)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988874
No 66
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=88.53 E-value=0.17 Score=35.29 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=21.8
Q ss_pred CCccCcCcccchHHhhcccccccCCeeEEEe
Q psy14393 1 MLDEEIGGSQGMSLFVTTDAFKKMNVGCALD 31 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~~~~~~~~~~~~id 31 (114)
++|||.|+..|+++|++++......+++++.
T Consensus 67 ~~~EE~g~~~g~~~l~~~~~~~~~~~~~~~~ 97 (189)
T PF01546_consen 67 TPDEEIGSIGGAKHLLEEGAFFGLHPDYVII 97 (189)
T ss_dssp ESTCCGTSTTHHHHHHHHCEEEEEEESEEEE
T ss_pred cccccCCCcchhhhhhhhccccccccccccc
Confidence 4799999755999999864233333677774
No 67
>KOG2276|consensus
Probab=83.25 E-value=3.8 Score=33.96 Aligned_cols=76 Identities=21% Similarity=0.300 Sum_probs=52.1
Q ss_pred ccCcCcccchHHhhcc---cccccCCeeEEEecCcccCC-----CcceeeecccceEEEEEEEec--cCCCcCCCCC--C
Q psy14393 3 DEEIGGSQGMSLFVTT---DAFKKMNVGCALDEGIASPT-----EVFALFNGERTIWQMKIHCPG--TPGHGSLLHE--N 70 (114)
Q Consensus 3 DEE~Gg~~G~~~l~~~---~~~~~~~~~~~idEG~~~~~-----~~~~i~~aeKG~~~~~v~v~G--~~gHsS~P~~--~ 70 (114)
-||+|+ .|...+++. ..|++ +|++.. ++. ..-.+.++-+|.+.|.+.|.| +=.||...-+ +
T Consensus 165 mEEsgS-~~L~~l~~~~kD~~~~~--vD~vci----SdnyWlg~kkPcltyGlRG~~yf~i~v~g~~~DlHSGvfGG~~h 237 (473)
T KOG2276|consen 165 MEESGS-EGLDELIEKEKDKFFKD--VDFVCI----SDNYWLGTKKPCLTYGLRGVIYFQIEVEGPSKDLHSGVFGGVVH 237 (473)
T ss_pred chhccC-ccHHHHHHHHhhhhhcc--CCEEEe----eCceeccCCCcccccccccceeEEEEEeecccccccccccchhH
Confidence 589987 688777764 23444 677642 221 122456888999999999999 8889998754 5
Q ss_pred CHHHHHHHHHHHHHH
Q psy14393 71 TAAEKVNYIMNKFLA 85 (114)
Q Consensus 71 nAi~~~~~~i~~l~~ 85 (114)
-|+..|..++..|.+
T Consensus 238 E~m~dL~~~ms~Lv~ 252 (473)
T KOG2276|consen 238 EAMNDLVLVMSSLVD 252 (473)
T ss_pred HHHHHHHHHHHHhcC
Confidence 677677777666644
No 68
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=61.23 E-value=35 Score=21.11 Aligned_cols=62 Identities=8% Similarity=0.226 Sum_probs=41.1
Q ss_pred hHHhhcccccccCCeeEEEecCcccCCCcceeeecccceEEEEEEEeccCCCcCCCCCCCHHHHHHHHHHHHH
Q psy14393 12 MSLFVTTDAFKKMNVGCALDEGIASPTEVFALFNGERTIWQMKIHCPGTPGHGSLLHENTAAEKVNYIMNKFL 84 (114)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~idEG~~~~~~~~~i~~aeKG~~~~~v~v~G~~gHsS~P~~~nAi~~~~~~i~~l~ 84 (114)
++.+++. .|-.+.+.+.++ +..++.|.+.+.-.-...++++|.+... -+......+++..|+
T Consensus 4 lr~iiE~-aflPl~C~ct~~-----~~~smtvrl~d~~sg~~~l~vtGI~~~~-----l~s~rdI~~LI~eLr 65 (69)
T PF07865_consen 4 LRQIIEQ-AFLPLRCECTIA-----PDGSMTVRLFDPASGRVELTVTGISTSA-----LNSSRDIVRLIAELR 65 (69)
T ss_pred HHHHHHH-cCCCceeEEEEC-----CCCcEEEEEecCCCCcEEEEEcCcCHHH-----cCCHHHHHHHHHHHH
Confidence 3556664 555555666664 3346788888999999999999965533 345556666666663
No 69
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=43.69 E-value=16 Score=29.35 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.5
Q ss_pred CCccCcCcccchHHhhcc
Q psy14393 1 MLDEEIGGSQGMSLFVTT 18 (114)
Q Consensus 1 ~~DEE~Gg~~G~~~l~~~ 18 (114)
+.|||.| ..|+++++++
T Consensus 172 ~~~EE~G-l~GS~~~~~~ 188 (346)
T PRK10199 172 TSGEEEG-KLGAENLLKR 188 (346)
T ss_pred ECCcccC-cHHHHHHHHh
Confidence 4799997 6899999985
No 70
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=41.62 E-value=49 Score=27.55 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=15.7
Q ss_pred EEeccCCCcCCCCCCCHH
Q psy14393 56 HCPGTPGHGSLLHENTAA 73 (114)
Q Consensus 56 ~v~G~~gHsS~P~~~nAi 73 (114)
...|..|-|+||++.|+|
T Consensus 262 f~~gq~GSSaMPHKrNPi 279 (438)
T COG0015 262 FAKGQVGSSAMPHKRNPI 279 (438)
T ss_pred cCCCCCCCCCCCcccCcH
Confidence 348999999999999988
No 71
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=24.36 E-value=1e+02 Score=21.91 Aligned_cols=33 Identities=18% Similarity=0.087 Sum_probs=25.2
Q ss_pred ecccceEEEEEEEeccCCCcCCCCC---CCHHHHHH
Q psy14393 45 NGERTIWQMKIHCPGTPGHGSLLHE---NTAAEKVN 77 (114)
Q Consensus 45 ~aeKG~~~~~v~v~G~~gHsS~P~~---~nAi~~~~ 77 (114)
..++|.-.+.|.++|.+|+.|.-++ .+||..|.
T Consensus 85 ~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~ 120 (149)
T PTZ00129 85 CKELGINALHIKLRATGGVRTKTPGPGAQAALRALA 120 (149)
T ss_pred HHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHH
Confidence 3578999999999999999998654 55554443
No 72
>PF11693 DUF2990: Protein of unknown function (DUF2990); InterPro: IPR021706 This family of proteins represents a fungal protein with unknown function.
Probab=24.24 E-value=1.2e+02 Score=18.55 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhCCCCCccce
Q psy14393 74 EKVNYIMNKFLALREEEKNKLKANKNLTIGDV 105 (114)
Q Consensus 74 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 105 (114)
..|++++.++.++-+..++......+++.+.|
T Consensus 23 ~dlaeFy~rVSk~I~~~~~~~~a~~tCD~Ski 54 (64)
T PF11693_consen 23 DDLAEFYGRVSKYIESAKDLIKATTTCDTSKI 54 (64)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccChhhc
Confidence 46888899988887776665555557777655
No 73
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=21.77 E-value=31 Score=23.80 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=17.9
Q ss_pred CccCcCcccchHHhhcccccccCCeeEEEe
Q psy14393 2 LDEEIGGSQGMSLFVTTDAFKKMNVGCALD 31 (114)
Q Consensus 2 ~DEE~Gg~~G~~~l~~~~~~~~~~~~~~id 31 (114)
..||.| ..|+++++++......++.++|+
T Consensus 58 ~~EE~g-l~GS~~~~~~~~~~~~~~~~~in 86 (179)
T PF04389_consen 58 DGEEQG-LLGSRAFVEHDHEELDNIAAVIN 86 (179)
T ss_dssp SSGGGT-SHHHHHHHHHHHCHHHHEEEEEE
T ss_pred cccccC-ccchHHHHHhhhcccccceeEEe
Confidence 468987 78999999741111123555654
Done!