Query psy14394
Match_columns 200
No_of_seqs 189 out of 1455
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 18:44:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3071|consensus 99.9 5.7E-24 1.2E-28 183.9 10.3 107 48-155 158-267 (274)
2 PF01151 ELO: GNS1/SUR4 family 99.9 4E-24 8.8E-29 183.2 8.1 121 27-154 120-250 (250)
3 PTZ00251 fatty acid elongase; 99.9 2.1E-22 4.6E-27 174.8 8.7 109 45-154 153-270 (272)
4 KOG3071|consensus 99.7 1.4E-18 3E-23 150.5 1.5 109 11-155 163-271 (274)
5 KOG3072|consensus 99.7 2.4E-18 5.1E-23 148.5 2.0 137 5-150 127-269 (282)
6 PF01151 ELO: GNS1/SUR4 family 99.6 2.1E-16 4.5E-21 135.6 6.4 107 9-150 140-250 (250)
7 PTZ00251 fatty acid elongase; 99.5 8.6E-15 1.9E-19 127.3 5.6 106 14-150 165-270 (272)
8 KOG3072|consensus 99.4 1.7E-14 3.6E-19 124.8 -2.6 117 6-157 164-280 (282)
9 COG4858 Uncharacterized membra 69.7 30 0.00066 29.1 7.7 45 69-115 142-186 (226)
10 PRK06531 yajC preprotein trans 45.2 9.4 0.0002 29.2 0.7 18 160-177 29-46 (113)
11 KOG1277|consensus 34.3 1.9E+02 0.0041 27.8 7.4 71 25-118 502-572 (593)
12 KOG3052|consensus 30.3 30 0.00064 30.4 1.5 23 176-198 142-164 (311)
13 PF02699 YajC: Preprotein tran 29.8 19 0.0004 25.7 0.1 18 160-177 29-46 (82)
14 PRK05886 yajC preprotein trans 28.4 23 0.0005 26.9 0.4 18 160-177 31-48 (109)
15 PF05814 DUF843: Baculovirus p 27.6 2.4E+02 0.0052 20.4 8.0 24 157-180 58-81 (83)
16 cd00126 PAH Pancreatic Hormone 25.7 52 0.0011 20.1 1.6 17 179-195 6-22 (36)
17 PF07851 TMPIT: TMPIT-like pro 25.2 4.4E+02 0.0096 23.9 8.1 22 63-84 219-245 (330)
18 smart00309 PAH Pancreatic horm 23.2 62 0.0013 19.8 1.6 17 179-195 6-22 (36)
19 PF05756 S-antigen: S-antigen 23.2 77 0.0017 22.9 2.3 8 130-137 9-16 (94)
20 PRK05585 yajC preprotein trans 21.4 48 0.001 24.9 1.0 18 160-177 45-62 (106)
No 1
>KOG3071|consensus
Probab=99.90 E-value=5.7e-24 Score=183.94 Aligned_cols=107 Identities=42% Similarity=0.748 Sum_probs=95.3
Q ss_pred eEeeeecccceeechhhhhhhHHHHHHHHHHhhCCCccccchhhHhhhhhhHHHHHHHHHHHHHH-hcc-CCCChHH-HH
Q psy14394 48 KKYITRLQLGVIIGIVNSFVHVVMYSYYFLAALGPHMQKHLWWKKYITRLQLIQFAIILSYAVAL-LVN-DCPLPKA-LN 124 (200)
Q Consensus 48 k~~iT~~Q~~qf~i~lNs~VHviMY~YY~l~~~g~~~~~~~~~k~~iT~~QivQF~~~~~~~~~~-~~~-~C~~p~~-~~ 124 (200)
-++.+. ++..+.+.+|++||++||+||+++++|++.++++|||+++|.+|.+||++.++|..+. ++. +|.+|++ ++
T Consensus 158 l~~~~~-g~~~~~~~lNs~VHviMY~YYflsa~G~~v~~~lWWkky~t~vQlvqf~~~~~~~~~~~~~~~~c~~~~~~~~ 236 (274)
T KOG3071|consen 158 LKFYGG-GHGFFAILLNSFVHVIMYGYYFLSAFGPRVQWYLWWKKYITIVQLVQFLILFVHTLYVHLFKPGCCFGIGAWA 236 (274)
T ss_pred eEEeCC-ceeeeeeehhhhHHHHHHHHHHHHhhCcCccccchHHHHHHHHHHHHHHHHHHHHhheeeecCCCCCchHHHH
Confidence 344444 7889999999999999999999999999999999999999999999999999999888 564 8999999 77
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCccccc
Q psy14394 125 WIMAFQSTVFSLLFANFYYKAYVRSPTKKLK 155 (200)
Q Consensus 125 ~~~~~~~~~fl~LF~~FY~~~Y~kkk~kk~k 155 (200)
+...++.++|+.||.|||.++|+|+++++.+
T Consensus 237 ~~~~~~~~~~l~LF~nFY~~tY~k~~~~~~~ 267 (274)
T KOG3071|consen 237 FNGSVINVSFLLLFSNFYIKTYKKPKKKKAK 267 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 7778999999999999999999997665543
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=99.90 E-value=4e-24 Score=183.21 Aligned_cols=121 Identities=40% Similarity=0.633 Sum_probs=99.9
Q ss_pred HHhHHHHHHhcCCCccceeeeeEeeee-cccceeechhhhhhhHHHHHHHHHHhhCCCccccchhhHhhhhhhHHHHHHH
Q psy14394 27 VMYSYYFLAALGPHMQKHLWWKKYITR-LQLGVIIGIVNSFVHVVMYSYYFLAALGPHMQKHLWWKKYITRLQLIQFAII 105 (200)
Q Consensus 27 iMY~YY~l~s~g~~~~~~~wWk~~iT~-~Q~~qf~i~lNs~VHviMY~YY~l~~~g~~~~~~~~~k~~iT~~QivQF~~~ 105 (200)
+...|...+.+ ..||..+... .+...+++.+|++||++||+||+++++|.+ +.++|||++||.+||+||+++
T Consensus 120 fLHvYHH~~~~------~~~w~~~~~~~~~~~~~~~~~N~~VH~iMY~YY~l~a~g~~-~~~~~~k~~IT~~Qi~QF~~~ 192 (250)
T PF01151_consen 120 FLHVYHHASTL------LYCWISYKYGPGGQIWFIAALNSFVHVIMYSYYFLSALGIR-KVPRWWKKYITSLQIVQFVIG 192 (250)
T ss_pred hhHHhhhhhhh------hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHHHhcccc-cchhHHHHHHhHHhhhhhHHH
Confidence 34455555554 3467666665 666777779999999999999999999953 123699999999999999999
Q ss_pred HHHHHHHhcc------CC---CChHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcccc
Q psy14394 106 LSYAVALLVN------DC---PLPKALNWIMAFQSTVFSLLFANFYYKAYVRSPTKKL 154 (200)
Q Consensus 106 ~~~~~~~~~~------~C---~~p~~~~~~~~~~~~~fl~LF~~FY~~~Y~kkk~kk~ 154 (200)
+++..++++. +| ++|.....+...++++++.||.|||+++|.+|+++|+
T Consensus 193 ~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~~~~~~k~ 250 (250)
T PF01151_consen 193 IVHTVYALYYYFFPGGDCDTSGYPKFNAILGLVYYVSYLYLFINFYIKSYIKKKKKKK 250 (250)
T ss_pred HHHHHHHhheeccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCC
Confidence 9999888764 89 7779999999999999999999999999999877654
No 3
>PTZ00251 fatty acid elongase; Provisional
Probab=99.87 E-value=2.1e-22 Score=174.77 Aligned_cols=109 Identities=25% Similarity=0.294 Sum_probs=86.7
Q ss_pred eeeeEeeeecccceeechhhhhhhHHHHHHHHHHhhCCCccccchhhHhhhhhhHHHHHHHHHHHHHHhc--------cC
Q psy14394 45 LWWKKYITRLQLGVIIGIVNSFVHVVMYSYYFLAALGPHMQKHLWWKKYITRLQLIQFAIILSYAVALLV--------ND 116 (200)
Q Consensus 45 ~wWk~~iT~~Q~~qf~i~lNs~VHviMY~YY~l~~~g~~~~~~~~~k~~iT~~QivQF~~~~~~~~~~~~--------~~ 116 (200)
.||..+....+...+++.+|++||++||+||+++++|++. ...|||++||.+|++||++++++..+.++ .+
T Consensus 153 ~~w~~~~~g~~~~~~~~~lNs~VH~iMY~YY~lsa~g~~~-~~~~~kk~IT~lQi~Qfv~~~~~~~~~~~~~~~~~~~~~ 231 (272)
T PTZ00251 153 YAWMSYQQGSSIWICAAAMNYFVHSIMYFYFALSEAGFKK-LVKPFAMYITLLQITQMVGGLFVSGYVIVQKLTKGDPKG 231 (272)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Confidence 3555554434444445889999999999999999999862 13459999999999999999999887764 36
Q ss_pred CCChH-HHHHHHHHHHHHHHHHHHHHHhhcccCCCcccc
Q psy14394 117 CPLPK-ALNWIMAFQSTVFSLLFANFYYKAYVRSPTKKL 154 (200)
Q Consensus 117 C~~p~-~~~~~~~~~~~~fl~LF~~FY~~~Y~kkk~kk~ 154 (200)
|+++. ........++++|+.||.|||+++|.++|++++
T Consensus 232 C~~~~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~~~~~~~~ 270 (272)
T PTZ00251 232 CSGTTMATARGQLMIYIFNFYLFSEMFVKGYVLPRKAKA 270 (272)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 98877 667777889999999999999999988765543
No 4
>KOG3071|consensus
Probab=99.71 E-value=1.4e-18 Score=150.47 Aligned_cols=109 Identities=36% Similarity=0.520 Sum_probs=85.2
Q ss_pred CCchhhHHHHhhHHHHHHhHHHHHHhcCCCccceeeeeEeeeecccceeechhhhhhhHHHHHHHHHHhhCCCccccchh
Q psy14394 11 SEQGVIIGIVNSFVHVVMYSYYFLAALGPHMQKHLWWKKYITRLQLGVIIGIVNSFVHVVMYSYYFLAALGPHMQKHLWW 90 (200)
Q Consensus 11 ~~~~~~~~~~N~~VH~iMY~YY~l~s~g~~~~~~~wWk~~iT~~Q~~qf~i~lNs~VHviMY~YY~l~~~g~~~~~~~~~ 90 (200)
+|+.++.+++|++||++||+||+++|+||++++.+|||+++|.+|.+||.+. ++|+... ..+.++|+.. + +.
T Consensus 163 ~g~~~~~~~lNs~VHviMY~YYflsa~G~~v~~~lWWkky~t~vQlvqf~~~---~~~~~~~-~~~~~~c~~~--~--~~ 234 (274)
T KOG3071|consen 163 GGHGFFAILLNSFVHVIMYGYYFLSAFGPRVQWYLWWKKYITIVQLVQFLIL---FVHTLYV-HLFKPGCCFG--I--GA 234 (274)
T ss_pred CceeeeeeehhhhHHHHHHHHHHHHhhCcCccccchHHHHHHHHHHHHHHHH---HHHHhhe-eeecCCCCCc--h--HH
Confidence 6999999999999999999999999999999999999999999999999887 7886543 2233456531 0 10
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccc
Q psy14394 91 KKYITRLQLIQFAIILSYAVALLVNDCPLPKALNWIMAFQSTVFSLLFANFYYKAYVRSPTKKLK 155 (200)
Q Consensus 91 k~~iT~~QivQF~~~~~~~~~~~~~~C~~p~~~~~~~~~~~~~fl~LF~~FY~~~Y~kkk~kk~k 155 (200)
.- + .......+++++|..|..+-|.++-.++++++++
T Consensus 235 ~~---------~-------------------~~~~~~~~~l~LF~nFY~~tY~k~~~~~~~~~~~ 271 (274)
T KOG3071|consen 235 WA---------F-------------------NGSVINVSFLLLFSNFYIKTYKKPKKKKAKKKAS 271 (274)
T ss_pred HH---------H-------------------HHHHHHHHHHHHHHHHHHHHhccccccchhhhhc
Confidence 00 0 1124578899999999999999988777666554
No 5
>KOG3072|consensus
Probab=99.71 E-value=2.4e-18 Score=148.54 Aligned_cols=137 Identities=26% Similarity=0.402 Sum_probs=105.8
Q ss_pred cccCCCCCchhhHHHHhhHHHHHHhHHHHHHhcCCCccceeeeeEeeeecccceeechhhhhhhHHHHHHHHHHhhCCCc
Q psy14394 5 VSRSPFSEQGVIIGIVNSFVHVVMYSYYFLAALGPHMQKHLWWKKYITRLQLGVIIGIVNSFVHVVMYSYYFLAALGPHM 84 (200)
Q Consensus 5 ~~~~~~~~~~~~~~~~N~~VH~iMY~YY~l~s~g~~~~~~~wWk~~iT~~Q~~qf~i~lNs~VHviMY~YY~l~~~g~~~ 84 (200)
+||.| +...++|+++=--=-++|.+|..+..+ ..-|..+.+......+++.+|.+||.+||+||.+++++.|+
T Consensus 127 lSK~~-ElgDT~FiVLRKrPliFlHWYHHi~~~------iy~~~~y~~~~a~~rw~i~mNy~vHa~MY~YY~lrsl~ir~ 199 (282)
T KOG3072|consen 127 LSKAP-ELGDTIFIVLRKRPLIFLHWYHHILVL------IYAWHSYIEKVAWGRWFIWMNYLVHAFMYSYYALRSLGIRL 199 (282)
T ss_pred HHhhh-hhhceeEEEeccCccEEEechhhheee------eeeeeecccCCcCceEEEEEehhHHHHHHHHHHHHHcCCCC
Confidence 34444 333444333322223455677766665 23488999988899999999999999999999999999987
Q ss_pred cccchhhHhhhhhhHHHHHHHHHHHHHHhc----cC--CCChHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy14394 85 QKHLWWKKYITRLQLIQFAIILSYAVALLV----ND--CPLPKALNWIMAFQSTVFSLLFANFYYKAYVRSP 150 (200)
Q Consensus 85 ~~~~~~k~~iT~~QivQF~~~~~~~~~~~~----~~--C~~p~~~~~~~~~~~~~fl~LF~~FY~~~Y~kkk 150 (200)
| .+..+.+|.+||+||++++........ .+ |..+..+..++....++|++||.+||.++|.++.
T Consensus 200 P--k~vam~iTtlQi~Qm~i~~~i~~~v~~~~~~~~~~c~~s~~~~~l~~~my~syfvLf~~Ff~~aYi~~g 269 (282)
T KOG3072|consen 200 P--KSVAMAITTLQIVQMVIGCYIGTHVYYVKHTHQLLCQQSYKNLSLCFLMYISYFVLFANFFYQAYIKKG 269 (282)
T ss_pred C--hHHHHHHHHHHHHHHHHHHheeeEEEEEEecCCeeeeeeccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 6 478899999999999998876553322 22 9888888889999999999999999999999973
No 6
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=99.64 E-value=2.1e-16 Score=135.57 Aligned_cols=107 Identities=33% Similarity=0.455 Sum_probs=77.6
Q ss_pred CCCCchhhHHHHhhHHHHHHhHHHHHHhcCCC-ccceeeeeEeeeecccceeechhhhhhhHHHHHHHH-H--HhhCCCc
Q psy14394 9 PFSEQGVIIGIVNSFVHVVMYSYYFLAALGPH-MQKHLWWKKYITRLQLGVIIGIVNSFVHVVMYSYYF-L--AALGPHM 84 (200)
Q Consensus 9 ~~~~~~~~~~~~N~~VH~iMY~YY~l~s~g~~-~~~~~wWk~~iT~~Q~~qf~i~lNs~VHviMY~YY~-l--~~~g~~~ 84 (200)
+++|+..+.+++|++||++||+||+++|+|.| .| .|||+++|.+|++||+++ ++|.....+.. . .+|+.+
T Consensus 140 ~~~~~~~~~~~~N~~VH~iMY~YY~l~a~g~~~~~--~~~k~~IT~~Qi~QF~~~---~~~~~~~~~~~~~~~~~C~~~- 213 (250)
T PF01151_consen 140 GPGGQIWFIAALNSFVHVIMYSYYFLSALGIRKVP--RWWKKYITSLQIVQFVIG---IVHTVYALYYYFFPGGDCDTS- 213 (250)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhcccccch--hHHHHHHhHHhhhhhHHH---HHHHHHHhheeccCCCCCCcc-
Confidence 34888999999999999999999999999976 33 489999999999999998 45554332221 1 245221
Q ss_pred cccchhhHhhhhhhHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy14394 85 QKHLWWKKYITRLQLIQFAIILSYAVALLVNDCPLPKALNWIMAFQSTVFSLLFANFYYKAYVRSP 150 (200)
Q Consensus 85 ~~~~~~k~~iT~~QivQF~~~~~~~~~~~~~~C~~p~~~~~~~~~~~~~fl~LF~~FY~~~Y~kkk 150 (200)
..+++.. .......++++++|..+|.+-|.++-.+||
T Consensus 214 -~~~~~~~----------------------------~~~~~~~~s~l~LF~~Fy~~~Y~~~~~~k~ 250 (250)
T PF01151_consen 214 -GYPKFNA----------------------------ILGLVYYVSYLYLFINFYIKSYIKKKKKKK 250 (250)
T ss_pred -hhHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHhCcCCCCCC
Confidence 0111100 012346788999999999999999988775
No 7
>PTZ00251 fatty acid elongase; Provisional
Probab=99.53 E-value=8.6e-15 Score=127.27 Aligned_cols=106 Identities=24% Similarity=0.229 Sum_probs=69.4
Q ss_pred hhhHHHHhhHHHHHHhHHHHHHhcCCCccceeeeeEeeeecccceeechhhhhhhHHHHHHHHHHhhCCCccccchhhHh
Q psy14394 14 GVIIGIVNSFVHVVMYSYYFLAALGPHMQKHLWWKKYITRLQLGVIIGIVNSFVHVVMYSYYFLAALGPHMQKHLWWKKY 93 (200)
Q Consensus 14 ~~~~~~~N~~VH~iMY~YY~l~s~g~~~~~~~wWk~~iT~~Q~~qf~i~lNs~VHviMY~YY~l~~~g~~~~~~~~~k~~ 93 (200)
..+++++|++||++||+||+++|+|++.+ .-|||+++|.+|++||+++ ++|. .+..+....|+.. +.
T Consensus 165 ~~~~~~lNs~VH~iMY~YY~lsa~g~~~~-~~~~kk~IT~lQi~Qfv~~---~~~~-~~~~~~~~~~~~~--~~------ 231 (272)
T PTZ00251 165 WICAAAMNYFVHSIMYFYFALSEAGFKKL-VKPFAMYITLLQITQMVGG---LFVS-GYVIVQKLTKGDP--KG------ 231 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchh-hhHHHHHHHHHHHHHHHHH---HHHH-HHHHHhhcccCCC--CC------
Confidence 33458999999999999999999999732 1149999999999999987 4553 2322221123210 00
Q ss_pred hhhhhHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy14394 94 ITRLQLIQFAIILSYAVALLVNDCPLPKALNWIMAFQSTVFSLLFANFYYKAYVRSP 150 (200)
Q Consensus 94 iT~~QivQF~~~~~~~~~~~~~~C~~p~~~~~~~~~~~~~fl~LF~~FY~~~Y~kkk 150 (200)
|+........ ....++++++++|..||.+.|.++..+++
T Consensus 232 ---C~~~~~~~~~---------------~~~~~~~s~l~LF~~Fy~~~Y~~~~~~~~ 270 (272)
T PTZ00251 232 ---CSGTTMATAR---------------GQLMIYIFNFYLFSEMFVKGYVLPRKAKA 270 (272)
T ss_pred ---CCCchHHHHH---------------HHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 1100000000 11235788999999999999998876654
No 8
>KOG3072|consensus
Probab=99.39 E-value=1.7e-14 Score=124.78 Aligned_cols=117 Identities=25% Similarity=0.171 Sum_probs=82.0
Q ss_pred ccCCCCCchhhHHHHhhHHHHHHhHHHHHHhcCCCccceeeeeEeeeecccceeechhhhhhhHHHHHHHHHHhhCCCcc
Q psy14394 6 SRSPFSEQGVIIGIVNSFVHVVMYSYYFLAALGPHMQKHLWWKKYITRLQLGVIIGIVNSFVHVVMYSYYFLAALGPHMQ 85 (200)
Q Consensus 6 ~~~~~~~~~~~~~~~N~~VH~iMY~YY~l~s~g~~~~~~~wWk~~iT~~Q~~qf~i~lNs~VHviMY~YY~l~~~g~~~~ 85 (200)
|-.++.+.+++++.+|.+||++||+||+++|+|+|+|+ |..+.+|.+|++||.+++-..+|+ ||....-+.+
T Consensus 164 ~y~~~~a~~rw~i~mNy~vHa~MY~YY~lrsl~ir~Pk--~vam~iTtlQi~Qm~i~~~i~~~v----~~~~~~~~~~-- 235 (282)
T KOG3072|consen 164 SYIEKVAWGRWFIWMNYLVHAFMYSYYALRSLGIRLPK--SVAMAITTLQIVQMVIGCYIGTHV----YYVKHTHQLL-- 235 (282)
T ss_pred ecccCCcCceEEEEEehhHHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHHHHHHHHHheeeEE----EEEEecCCee--
Confidence 33456788888889999999999999999999999997 689999999999999986555553 2222111100
Q ss_pred ccchhhHhhhhhhHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccccc
Q psy14394 86 KHLWWKKYITRLQLIQFAIILSYAVALLVNDCPLPKALNWIMAFQSTVFSLLFANFYYKAYVRSPTKKLKQQ 157 (200)
Q Consensus 86 ~~~~~k~~iT~~QivQF~~~~~~~~~~~~~~C~~p~~~~~~~~~~~~~fl~LF~~FY~~~Y~kkk~kk~k~~ 157 (200)
||. ++ ..-....+++++|.++|..+|.+.|+++-.+|.++.+|++
T Consensus 236 -----------c~~-s~---------------~~~~l~~~my~syfvLf~~Ff~~aYi~~g~~k~~~~~k~~ 280 (282)
T KOG3072|consen 236 -----------CQQ-SY---------------KNLSLCFLMYISYFVLFANFFYQAYIKKGFGKFKKFSKHE 280 (282)
T ss_pred -----------eee-ec---------------cchhhHHHHHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 000 00 0001223589999999999999999998644444444443
No 9
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=69.71 E-value=30 Score=29.08 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhCCCccccchhhHhhhhhhHHHHHHHHHHHHHHhcc
Q psy14394 69 VVMYSYYFLAALGPHMQKHLWWKKYITRLQLIQFAIILSYAVALLVN 115 (200)
Q Consensus 69 viMY~YY~l~~~g~~~~~~~~~k~~iT~~QivQF~~~~~~~~~~~~~ 115 (200)
-+|| ||+-+..+.+.+|..|||-. -..-..-++.++......+.+
T Consensus 142 y~my-~y~yr~~ad~sqr~~~~K~~-lv~~~sm~lWi~v~i~t~~lP 186 (226)
T COG4858 142 YIMY-YYAYRMRADNSQRPGTWKYL-LVAVLSMLLWIAVMIATVFLP 186 (226)
T ss_pred HHHH-HHHHHhhcccccCCchHHHH-HHHHHHHHHHHHHHHHHhhCC
Confidence 3444 33435555555666667543 333333444444444433333
No 10
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=45.20 E-value=9.4 Score=29.21 Aligned_cols=18 Identities=11% Similarity=0.254 Sum_probs=13.3
Q ss_pred hHHHHHHhHHHhHhhhcc
Q psy14394 160 EAREKQRQFEKHQQMLNN 177 (200)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~ 177 (200)
+..+..++++++.++.|.
T Consensus 29 e~~em~~sLk~GD~VvT~ 46 (113)
T PRK06531 29 ERQNQLNAIQKGDEVVTI 46 (113)
T ss_pred HHHHHHHhcCCCCEEEEC
Confidence 456778888888887754
No 11
>KOG1277|consensus
Probab=34.29 E-value=1.9e+02 Score=27.82 Aligned_cols=71 Identities=15% Similarity=0.335 Sum_probs=41.2
Q ss_pred HHHHhHHHHHHhcCCCccceeeeeEeeeecccceeechhhhhhhHHHHHHHHHHhhCCCccccchhhHhhhhhhHHHHHH
Q psy14394 25 HVVMYSYYFLAALGPHMQKHLWWKKYITRLQLGVIIGIVNSFVHVVMYSYYFLAALGPHMQKHLWWKKYITRLQLIQFAI 104 (200)
Q Consensus 25 H~iMY~YY~l~s~g~~~~~~~wWk~~iT~~Q~~qf~i~lNs~VHviMY~YY~l~~~g~~~~~~~~~k~~iT~~QivQF~~ 104 (200)
=+|.-+|+.|+|=.- ..||...+..+..+.++-. -.+|.|++-+. .-...|...++.
T Consensus 502 vTIv~TYFlLnaEDy----rW~WtSfls~~ST~~yvy~------Ys~yYy~~ktk-------------MsG~fQTsfyFG 558 (593)
T KOG1277|consen 502 VTIVLTYFLLNAEDY----RWWWTSFLSAGSTALYVYL------YSFYYYFFKTK-------------MSGLFQTSFYFG 558 (593)
T ss_pred HHHHHhHhhhccccc----eeeeeeeeccccceeehhh------hHHHHHhhhcc-------------ccchhhhhhhhH
Confidence 356789999988764 3478888887776554432 23343333222 223467766655
Q ss_pred HHHHHHHHhccCCC
Q psy14394 105 ILSYAVALLVNDCP 118 (200)
Q Consensus 105 ~~~~~~~~~~~~C~ 118 (200)
-...+.++++.-|+
T Consensus 559 Ym~~f~~~lgim~G 572 (593)
T KOG1277|consen 559 YMAVFCYALGLMCG 572 (593)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555554454
No 12
>KOG3052|consensus
Probab=30.30 E-value=30 Score=30.43 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=20.0
Q ss_pred ccCCCCCCCCChHHHhhhccccc
Q psy14394 176 NNNNNNNNITPPEELAKKVVNFT 198 (200)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~ 198 (200)
-++|+++...||-.|+.+.|+-|
T Consensus 142 gpdd~G~~~~RPGkLsD~~P~PY 164 (311)
T KOG3052|consen 142 GPDDEGEMFTRPGKLSDYFPSPY 164 (311)
T ss_pred CCCCCCCcccCCccccccCCCCC
Confidence 47888999999999999998754
No 13
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=29.79 E-value=19 Score=25.70 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=4.5
Q ss_pred hHHHHHHhHHHhHhhhcc
Q psy14394 160 EAREKQRQFEKHQQMLNN 177 (200)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~ 177 (200)
+..|..++++++.+|.|.
T Consensus 29 ~~~~m~~~Lk~Gd~VvT~ 46 (82)
T PF02699_consen 29 EHQEMLASLKPGDEVVTI 46 (82)
T ss_dssp HHTTGGG-----------
T ss_pred HHHHHHHcCCCCCEEEEC
Confidence 555677788888888754
No 14
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=28.38 E-value=23 Score=26.93 Aligned_cols=18 Identities=0% Similarity=0.102 Sum_probs=10.5
Q ss_pred hHHHHHHhHHHhHhhhcc
Q psy14394 160 EAREKQRQFEKHQQMLNN 177 (200)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~ 177 (200)
+..+..++++++.++.|.
T Consensus 31 ~~~~m~~~Lk~GD~VvT~ 48 (109)
T PRK05886 31 ATIDLHESLQPGDRVHTT 48 (109)
T ss_pred HHHHHHHhcCCCCEEEEC
Confidence 344666666666666543
No 15
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=27.63 E-value=2.4e+02 Score=20.43 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=15.4
Q ss_pred cchhHHHHHHhHHHhHhhhccCCC
Q psy14394 157 QDDEAREKQRQFEKHQQMLNNNNN 180 (200)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~ 180 (200)
++.....|||.+||......|-+|
T Consensus 58 ~k~K~~KKK~~ln~afDAiLNKN~ 81 (83)
T PF05814_consen 58 EKAKSIKKKRDLNDAFDAILNKNT 81 (83)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccC
Confidence 455556677777777776655444
No 16
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=25.70 E-value=52 Score=20.13 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=11.8
Q ss_pred CCCCCCCChHHHhhhcc
Q psy14394 179 NNNNNITPPEELAKKVV 195 (200)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ 195 (200)
++-.+++.||+|++=.-
T Consensus 6 ~~Pg~~a~~eel~~Y~~ 22 (36)
T cd00126 6 ENPGDDASPEELRQYLA 22 (36)
T ss_pred CCCCCCCCHHHHHHHHH
Confidence 34456778999997543
No 17
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=25.18 E-value=4.4e+02 Score=23.87 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=14.3
Q ss_pred hhhhhhHHHHHH-----HHHHhhCCCc
Q psy14394 63 VNSFVHVVMYSY-----YFLAALGPHM 84 (200)
Q Consensus 63 lNs~VHviMY~Y-----Y~l~~~g~~~ 84 (200)
.-++|+.+.|.| |-+.++|.+.
T Consensus 219 ~~~~vq~lQ~~YQ~~~Ly~l~AlG~~~ 245 (330)
T PF07851_consen 219 YQSVVQFLQYRYQRGCLYRLRALGKRH 245 (330)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhccCc
Confidence 345677777765 5567787653
No 18
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=23.18 E-value=62 Score=19.79 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=12.5
Q ss_pred CCCCCCCChHHHhhhcc
Q psy14394 179 NNNNNITPPEELAKKVV 195 (200)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ 195 (200)
++-.+++.||+|++=.-
T Consensus 6 ~~Pg~~a~~e~l~~Y~~ 22 (36)
T smart00309 6 ERPGDDASPEDLRQYLA 22 (36)
T ss_pred CCCCCCCCHHHHHHHHH
Confidence 45567899999987443
No 19
>PF05756 S-antigen: S-antigen protein; InterPro: IPR008825 S-antigens are heat stable proteins that are found in the blood of individuals infected with malaria [].
Probab=23.17 E-value=77 Score=22.88 Aligned_cols=8 Identities=25% Similarity=0.135 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy14394 130 QSTVFSLL 137 (200)
Q Consensus 130 ~~~~fl~L 137 (200)
+++.|++|
T Consensus 9 fylff~yl 16 (94)
T PF05756_consen 9 FYLFFLYL 16 (94)
T ss_pred HHHHHHHH
Confidence 33334433
No 20
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=21.43 E-value=48 Score=24.90 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=13.9
Q ss_pred hHHHHHHhHHHhHhhhcc
Q psy14394 160 EAREKQRQFEKHQQMLNN 177 (200)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~ 177 (200)
+..|..++++++.++.|.
T Consensus 45 ~~~~~~~~Lk~Gd~VvT~ 62 (106)
T PRK05585 45 EHKKMLSSLAKGDEVVTN 62 (106)
T ss_pred HHHHHHHhcCCCCEEEEC
Confidence 557888888888888754
Done!