Query psy14394
Match_columns 200
No_of_seqs 189 out of 1455
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 18:44:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bf9_A Pancreatic hormone; tur 42.7 13 0.00043 21.9 1.7 17 179-195 6-22 (36)
2 1bba_A Bovine pancreatic polyp 40.6 12 0.00042 22.0 1.4 17 179-195 6-22 (36)
3 2lnd_A De novo designed protei 40.2 5.8 0.0002 28.0 -0.1 40 158-197 59-98 (112)
4 1f8p_A Neuropeptide Y (PNPY); 27.9 23 0.00079 20.9 1.2 16 179-194 6-21 (37)
5 2l60_A Peptide YY; GPCR ligand 14.9 60 0.0021 19.5 1.1 13 182-194 13-25 (41)
6 1qbf_A Peptide YY, PYY; PP-fol 14.3 52 0.0018 19.4 0.6 19 179-197 6-24 (37)
7 1hgv_A PH75 inovirus major coa 10.3 86 0.003 18.8 0.7 16 184-199 2-17 (46)
8 2koe_A Human cannabinoid recep 8.6 53 0.0018 18.2 -0.7 18 15-32 7-24 (40)
9 3rvy_A ION transport protein; 7.2 4E+02 0.014 21.2 3.9 19 131-149 224-242 (285)
10 3arc_L Photosystem II reaction 6.4 4.5E+02 0.016 15.2 4.2 30 115-144 8-37 (37)
No 1
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=42.67 E-value=13 Score=21.93 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=12.4
Q ss_pred CCCCCCCChHHHhhhcc
Q psy14394 179 NNNNNITPPEELAKKVV 195 (200)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ 195 (200)
++-.+++.||+|++=.-
T Consensus 6 ~~PG~dA~~Eela~Y~~ 22 (36)
T 2bf9_A 6 TYPGDDAPVEDLIRFYN 22 (36)
T ss_dssp CCCCTTSCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHH
Confidence 44567899999997543
No 2
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=40.63 E-value=12 Score=21.99 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=12.3
Q ss_pred CCCCCCCChHHHhhhcc
Q psy14394 179 NNNNNITPPEELAKKVV 195 (200)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ 195 (200)
++-.+++.||+|++=.-
T Consensus 6 ~~PG~dA~pEela~Y~~ 22 (36)
T 1bba_A 6 EYPGDNATPEQMAQYAA 22 (36)
T ss_dssp CCCSSCSSTTHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHH
Confidence 34556899999997543
No 3
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=40.20 E-value=5.8 Score=27.97 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=27.4
Q ss_pred chhHHHHHHhHHHhHhhhccCCCCCCCCChHHHhhhcccc
Q psy14394 158 DDEAREKQRQFEKHQQMLNNNNNNNNITPPEELAKKVVNF 197 (200)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (200)
+++..++-+++..+-+-+-++-|--.++.||||..||..|
T Consensus 59 ngasqndvnefqneakkegvsydvlkstdpeeltqrvref 98 (112)
T 2lnd_A 59 NGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREF 98 (112)
T ss_dssp CSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHH
T ss_pred cCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHH
Confidence 3344444555555555556777777799999999999776
No 4
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=27.88 E-value=23 Score=20.94 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=11.7
Q ss_pred CCCCCCCChHHHhhhc
Q psy14394 179 NNNNNITPPEELAKKV 194 (200)
Q Consensus 179 ~~~~~~~~~~~~~~~~ 194 (200)
++-.+++.||+|++=.
T Consensus 6 ~~Pg~~a~pEela~Y~ 21 (37)
T 1f8p_A 6 DNPGEDAPAEDLARYY 21 (37)
T ss_dssp CCCCSSCTTTTHHHHH
T ss_pred CCCCCCCCHHHHHHHH
Confidence 3455688999998744
No 5
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=14.94 E-value=60 Score=19.54 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=9.7
Q ss_pred CCCCChHHHhhhc
Q psy14394 182 NNITPPEELAKKV 194 (200)
Q Consensus 182 ~~~~~~~~~~~~~ 194 (200)
.+++.||+|++=.
T Consensus 13 g~~aspEela~Y~ 25 (41)
T 2l60_A 13 LKKLSPEELNRYY 25 (41)
T ss_dssp HTTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 3578899998743
No 6
>1qbf_A Peptide YY, PYY; PP-fold, pancreatic hormone, , inhibitor/hormone complex; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ru5_A 1ruu_A 2rlk_A 2oop_A 2dez_A 2df0_A
Probab=14.31 E-value=52 Score=19.41 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=13.0
Q ss_pred CCCCCCCChHHHhhhcccc
Q psy14394 179 NNNNNITPPEELAKKVVNF 197 (200)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~ 197 (200)
++-.+++.||+|++=.-++
T Consensus 6 ~~Pg~da~pEela~Y~~~L 24 (37)
T 1qbf_A 6 EAPGEDASPEELSRYYASL 24 (37)
T ss_dssp CCCCCSSSSSTTTTTTTGG
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 3445688999998755443
No 7
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=10.25 E-value=86 Score=18.80 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=12.6
Q ss_pred CCChHHHhhhcccccc
Q psy14394 184 ITPPEELAKKVVNFTQ 199 (200)
Q Consensus 184 ~~~~~~~~~~~~~~~~ 199 (200)
|-.|+|.+..|++..|
T Consensus 2 dfnpseia~~v~~yi~ 17 (46)
T 1hgv_A 2 DFNPSEVASQVTNYIQ 17 (46)
T ss_dssp CSCTHHHHHHHHTTTH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3469999999988765
No 8
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=8.57 E-value=53 Score=18.21 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=13.2
Q ss_pred hhHHHHhhHHHHHHhHHH
Q psy14394 15 VIIGIVNSFVHVVMYSYY 32 (200)
Q Consensus 15 ~~~~~~N~~VH~iMY~YY 32 (200)
.+++.+|+.+.++.|.+.
T Consensus 7 ~~l~~~ns~lNPiIY~~~ 24 (40)
T 2koe_A 7 SMLCLLNSTVNPIIYALR 24 (40)
T ss_dssp HHHHHHHHHSSTTTTBTT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 356678888888888653
No 9
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=7.23 E-value=4e+02 Score=21.21 Aligned_cols=19 Identities=16% Similarity=0.022 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhhcccCC
Q psy14394 131 STVFSLLFANFYYKAYVRS 149 (200)
Q Consensus 131 ~~~fl~LF~~FY~~~Y~kk 149 (200)
.+.++.+|.-.-...+...
T Consensus 224 ~~~~lnl~~aii~~~f~~~ 242 (285)
T 3rvy_A 224 TFVMINLVVAICVDAMAIL 242 (285)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555545555443
No 10
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=6.44 E-value=4.5e+02 Score=15.18 Aligned_cols=30 Identities=17% Similarity=0.444 Sum_probs=0.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14394 115 NDCPLPKALNWIMAFQSTVFSLLFANFYYK 144 (200)
Q Consensus 115 ~~C~~p~~~~~~~~~~~~~fl~LF~~FY~~ 144 (200)
...+..+..++++....+...+||.+++..
T Consensus 8 q~VELNRTSLy~GLLlifvlavlFssyffN 37 (37)
T 3arc_L 8 QPVELNRTSLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcceechhhHHHHHHHHHHHHHHhhhhccC
Done!