Query psy14394
Match_columns 200
No_of_seqs 189 out of 1455
Neff 6.4
Searched_HMMs 13730
Date Fri Aug 16 18:44:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14394.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14394hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zaka2 g.41.2.1 (A:128-158) M 10.8 39 0.0028 17.8 0.8 13 183-195 16-29 (31)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 8.2 1.7E+02 0.012 15.5 3.8 23 121-143 14-36 (37)
3 d1xmeb2 f.17.2.1 (B:3-36) Bact 7.5 1.6E+02 0.012 15.0 2.5 17 122-138 15-31 (34)
4 d2dsya1 d.304.1.2 (A:3-82) Hyp 6.6 44 0.0032 21.0 -0.3 20 176-195 61-80 (80)
5 d1nkzb_ f.3.1.1 (B:) Light-har 6.3 1.9E+02 0.014 15.8 2.5 18 14-31 19-36 (41)
6 d1ijdb_ f.3.1.1 (B:) Light-har 6.0 1.7E+02 0.012 15.9 2.1 18 14-31 20-37 (40)
7 d1u7ka_ a.73.1.1 (A:) AKV caps 5.5 2.7E+02 0.02 18.8 3.6 34 161-195 65-98 (131)
8 d1bboa1 g.37.1.1 (A:1-28) Enha 5.3 1.2E+02 0.009 15.2 1.1 17 179-195 6-22 (28)
9 d1q90b_ f.21.1.2 (B:) Cytochro 4.0 3.1E+02 0.022 19.9 3.2 23 127-149 88-110 (212)
10 d1ppjc2 f.21.1.2 (C:15-260) Mi 4.0 2.3E+02 0.017 21.0 2.5 25 126-150 73-97 (246)
No 1
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=10.79 E-value=39 Score=17.78 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=9.5
Q ss_pred CCCCh-HHHhhhcc
Q psy14394 183 NITPP-EELAKKVV 195 (200)
Q Consensus 183 ~~~~~-~~~~~~~~ 195 (200)
++++| +|++.|++
T Consensus 16 f~ppp~~ei~~RLv 29 (31)
T d1zaka2 16 YSPPENEEIASRLT 29 (31)
T ss_dssp SSCCCSSGGGGGCB
T ss_pred cCCCCCHHHHHHHh
Confidence 46788 58888865
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.23 E-value=1.7e+02 Score=15.55 Aligned_cols=23 Identities=17% Similarity=0.530 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy14394 121 KALNWIMAFQSTVFSLLFANFYY 143 (200)
Q Consensus 121 ~~~~~~~~~~~~~fl~LF~~FY~ 143 (200)
+..++++....+...+||.++|.
T Consensus 14 rtsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHhc
Confidence 44555566656666677777654
No 3
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=7.49 E-value=1.6e+02 Score=15.00 Aligned_cols=17 Identities=18% Similarity=-0.068 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14394 122 ALNWIMAFQSTVFSLLF 138 (200)
Q Consensus 122 ~~~~~~~~~~~~fl~LF 138 (200)
.++.++..+++.|+.|.
T Consensus 15 gwlafslamlfvfiali 31 (34)
T d1xmeb2 15 GWLAFSLAMLFVFIALI 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45555666666666553
No 4
>d2dsya1 d.304.1.2 (A:3-82) Hypothetical protein TTHA0281 {Thermus thermophilus [TaxId: 274]}
Probab=6.56 E-value=44 Score=21.00 Aligned_cols=20 Identities=10% Similarity=-0.001 Sum_probs=16.2
Q ss_pred ccCCCCCCCCChHHHhhhcc
Q psy14394 176 NNNNNNNNITPPEELAKKVV 195 (200)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ 195 (200)
+--++++.+|+|+.+..+||
T Consensus 61 ~~~e~g~~iP~~~~~ei~ip 80 (80)
T d2dsya1 61 FLLSRGETPPPLGEVRIELP 80 (80)
T ss_dssp HHHHTTCCCCCBTTBCCCCC
T ss_pred HHHHcCCCCCCCCCceeeCc
Confidence 44678888999999888876
No 5
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=6.34 E-value=1.9e+02 Score=15.80 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=14.9
Q ss_pred hhhHHHHhhHHHHHHhHH
Q psy14394 14 GVIIGIVNSFVHVVMYSY 31 (200)
Q Consensus 14 ~~~~~~~N~~VH~iMY~Y 31 (200)
.++|+.+-.+.|.+-|.|
T Consensus 19 tRvF~~iA~~AH~La~~~ 36 (41)
T d1nkzb_ 19 TRVFLGLALVAHFLAFSA 36 (41)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 467888999999998875
No 6
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=6.02 E-value=1.7e+02 Score=15.90 Aligned_cols=18 Identities=6% Similarity=0.344 Sum_probs=14.8
Q ss_pred hhhHHHHhhHHHHHHhHH
Q psy14394 14 GVIIGIVNSFVHVVMYSY 31 (200)
Q Consensus 14 ~~~~~~~N~~VH~iMY~Y 31 (200)
.++|+.+-.+.|.+-|.|
T Consensus 20 tRvF~~iA~~AH~La~~~ 37 (40)
T d1ijdb_ 20 TRVFLVIAAIAHFLAFTL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHhc
Confidence 467888999999998875
No 7
>d1u7ka_ a.73.1.1 (A:) AKV capsid {AKV murine leukemia virus [TaxId: 11791]}
Probab=5.49 E-value=2.7e+02 Score=18.78 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=20.6
Q ss_pred HHHHHHhHHHhHhhhccCCCCCCCCChHHHhhhcc
Q psy14394 161 AREKQRQFEKHQQMLNNNNNNNNITPPEELAKKVV 195 (200)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (200)
++|+.+-+.+.++ +..++|.....-|..+...||
T Consensus 65 ~EEr~ril~eark-~v~~~~~~~~~~~~~~~~afP 98 (131)
T d1u7ka_ 65 GEEKQRVLLEARK-AVRGNDGRPTQLPNEVDAAFP 98 (131)
T ss_dssp HHHHHHHHHHHHH-TCBCTTSSBCCCHHHHHHHSC
T ss_pred hHHHHHHHHHHHH-HhhhcccCCccCCccHhhhCC
Confidence 3455555555555 334667777777777766666
No 8
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.28 E-value=1.2e+02 Score=15.20 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=12.3
Q ss_pred CCCCCCCChHHHhhhcc
Q psy14394 179 NNNNNITPPEELAKKVV 195 (200)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ 195 (200)
+=++.-..|++|+|-+-
T Consensus 6 ~Cg~~C~KPSvL~KHIR 22 (28)
T d1bboa1 6 ECGIRAKKPSMLKKHIR 22 (28)
T ss_dssp TTCCBCSSHHHHHHHHH
T ss_pred ccCcccCCHHHHHHHHH
Confidence 34566788999998653
No 9
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.05 E-value=3.1e+02 Score=19.94 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccCC
Q psy14394 127 MAFQSTVFSLLFANFYYKAYVRS 149 (200)
Q Consensus 127 ~~~~~~~fl~LF~~FY~~~Y~kk 149 (200)
+....+.++.++..+|..+|+++
T Consensus 88 s~~~~~~~lHm~r~~~~gsyk~p 110 (212)
T d1q90b_ 88 SMMVLMMVLHVFRVYLTGGFKRP 110 (212)
T ss_dssp HHHHHHHHHHHHHHHTTTTTSSS
T ss_pred hHHHHHHHHHHHHHHHcCcccCc
Confidence 45567888999999999999654
No 10
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.96 E-value=2.3e+02 Score=21.02 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCC
Q psy14394 126 IMAFQSTVFSLLFANFYYKAYVRSP 150 (200)
Q Consensus 126 ~~~~~~~~fl~LF~~FY~~~Y~kkk 150 (200)
.+....+.++.++..+|..+|++++
T Consensus 73 as~~~~~~~lHm~r~~~~~sy~~~~ 97 (246)
T d1ppjc2 73 ASMFFICLYMHVGRGLYYGSYTFLE 97 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGSHH
T ss_pred HHHHHHHHHHHHHHHHHhcCccchH
Done!