RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14394
(200 letters)
>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family. Members of this family are
involved in long chain fatty acid elongation systems
that produce the 26-carbon precursors for ceramide and
sphingolipid synthesis. Predicted to be integral
membrane proteins, in eukaryotes they are probably
located on the endoplasmic reticulum. Yeast ELO3 affects
plasma membrane H+-ATPase activity, and may act on a
glucose-signaling pathway that controls the expression
of several genes that are transcriptionally regulated by
glucose such as PMA1.
Length = 244
Score = 91.1 bits (227), Expect = 1e-22
Identities = 43/146 (29%), Positives = 56/146 (38%), Gaps = 49/146 (33%)
Query: 13 QGVIIGIVNSFVHVVMYSYYFLAALGPHMQKHLWWKKYITRLQLGVIIGIVNSFVHVVMY 72
I ++NSFVHV+MY YYFLAALG
Sbjct: 142 HFWFIALLNSFVHVIMYFYYFLAALGAR-------------------------------- 169
Query: 73 SYYFLAALGPHMQKHLWWKKYITRLQLIQFAIILSYAVALLVN----DCPLPKALNWIMA 128
+WWKKYIT+LQ+IQF + L++ L N C P +
Sbjct: 170 ------------GLPVWWKKYITQLQIIQFVLGLAHVGYALYNYTKGGCGGPFPKAVRLG 217
Query: 129 F-QSTVFSLLFANFYYKAYVRSPTKK 153
+ LF NFY K+Y + KK
Sbjct: 218 LVYYVSYLFLFLNFYIKSYKKPKKKK 243
>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional.
Length = 272
Score = 40.2 bits (94), Expect = 2e-04
Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 28/146 (19%)
Query: 14 GVIIGIVNSFVHVVMYSYYFLAALGPHMQKHLWWKKYITRLQLGVIIGIVNSFVHVVMYS 73
G + ++ F HV ++ Y W Y + + +N FVH +MY
Sbjct: 136 GKKLPFLSWFHHVTIFLYA--------------WMSYQQGSSIWICAAAMNYFVHSIMYF 181
Query: 74 YYFLAALGPHMQKHLW--WKKYITRLQLIQFAIILSYAVALLVNDCP--LPKALNW-IMA 128
Y+ L+ G K L + YIT LQ+ Q L + ++V PK + MA
Sbjct: 182 YFALSEAG---FKKLVKPFAMYITLLQITQMVGGLFVSGYVIVQKLTKGDPKGCSGTTMA 238
Query: 129 FQSTVFSLLFANFYY------KAYVR 148
+ NFY K YV
Sbjct: 239 TARGQLMIYIFNFYLFSEMFVKGYVL 264
>gnl|CDD|214805 smart00756, VKc, Family of likely enzymes that includes the
catalytic subunit of vitamin K epoxide reductase.
Bacterial homologues are fused to members of the
thioredoxin family of oxidoreductases.
Length = 142
Score = 29.6 bits (67), Expect = 0.57
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 11 SEQGVIIGIVNSFVHVVMYSYYFLAALGPHMQKHLWWKKYITRLQLGVIIGIVNSFVHVV 70
S I GI S + + Y A+ + + L LG + G V F +
Sbjct: 53 SPYASIFGIPLSLLGIAAYLVVLALAVLGLL-GVTLPRWTWRLLFLGSLAGAV--FSVYL 109
Query: 71 MY-SYYFLAAL 80
+Y + + AL
Sbjct: 110 IYLLVFVIKAL 120
>gnl|CDD|149126 pfam07884, VKOR, Vitamin K epoxide reductase family. Vitamin K
epoxide reductase (VKOR) recycles reduced vitamin K,
which is used subsequently as a co-factor in the
gamma-carboxylation of glutamic acid residues in blood
coagulation enzymes. VKORC1 is a member of a large
family of predicted enzymes that are present in
vertebrates, Drosophila, plants, bacteria and archaea.
Four cysteine residues and one residue, which is either
serine or threonine, are identified as likely
active-site residues. In some plant and bacterial
homologues the VKORC1 homologous domain is fused with
domains of the thioredoxin family of oxidoreductases.
Length = 138
Score = 29.6 bits (67), Expect = 0.62
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 11 SEQGVIIGIVNSFVHVVMYSYYFLAALGPHMQKHLWWKKYITR-LQLGVIIGIVNSFVHV 69
S I GI NS + ++ Y L + + ++ L LG ++G+V F
Sbjct: 49 SPWATIFGIPNSLLGILAYLVVLLLGVLG--LAGVTLSRWTWLGLFLGSLVGVV--FSVY 104
Query: 70 VMY-SYYFLAAL 80
++Y S + + AL
Sbjct: 105 LIYISVFVIGAL 116
>gnl|CDD|203394 pfam06133, DUF964, Protein of unknown function (DUF964). This
family consists of several relatively short bacterial
and archaeal hypothetical sequences. The function of
this family is unknown.
Length = 108
Score = 28.2 bits (64), Expect = 1.0
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 143 YKAYVRSPTKKLKQQDDEAREKQRQFEKHQQMLNNNNNNNNITPPEELAK 192
YKAY K + D+EA++ +F+K Q+ + P E K
Sbjct: 19 YKAYKE--AKAAIKADEEAQKLIDEFQKLQEEIQEKQMFGKEIPKEVQQK 66
>gnl|CDD|212045 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related
proteins; solute binding domain. Escherichia coli PutP
catalyzes the Na+-coupled uptake of proline with a
stoichiometry of 1:1. The putP gene is part of the put
operon; this operon in addition encodes a proline
dehydrogenase, allowing the use of proline as a source
of nitrogen and/or carbon. This subfamily also includes
the Bacillus subtilis Na+/proline cotransporter (OpuE)
which has an osmoprotective instead of catabolic role.
Expression of the opuE gene is under osmotic control and
different sigma factors contribute to its regulation; it
is also a putative CcpA-activated gene. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 464
Score = 29.0 bits (66), Expect = 1.9
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 15 VIIGIV--------NSFVH-VVMYSYYFL-AALGPHMQKHLWWKKYITRLQLGVIIGIVN 64
++I ++ S V +V +++ L AA GP + L+WK+ TR G + G++
Sbjct: 370 LVIALIALIIALNPPSSVFDLVSFAWAGLGAAFGPLLLLSLYWKRT-TRQ--GALAGMIA 426
Query: 65 SFVHVVMYSYYFLAALGPH 83
V V+++ L G +
Sbjct: 427 GAVTVIVWKLLGLGIFGLY 445
>gnl|CDD|222333 pfam13709, DUF4159, Domain of unknown function (DUF4159). Members
of this family are hypothetical proteins. TM prediction
shows them to have two transmembrane regions, with a
cytosolic region of about 25 amino acids between the
two, and an N-terminus outside the membrane.
Length = 203
Score = 28.3 bits (64), Expect = 2.0
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 25 HVVMYSYYFLAALGPHMQKHLWWKKYITRLQLGVIIGIVNSFVHVVMYSYYFLAALGPHM 84
HV+ S+Y L G + LW + QL GI V+YS L
Sbjct: 120 HVLFRSFYLLDFPGRYAGLPLWVEADGGDPQLF---GIFGDGRLPVIYSGNDLGDAWAVD 176
Query: 85 QKHLWWKKYITRLQLIQFAI-ILSYA 109
++ +F + I+ YA
Sbjct: 177 ERGNPPFPVRPGELAYRFGVNIVMYA 202
>gnl|CDD|213640 TIGR01601, PYST-C1, Plasmodium yoelii subtelomeric domain PYST-C1.
This model represents the N-terminal domain of a
paralogous family of Plasmodium yoelii genes
preferentially located in the subtelomeric regions of
the chromosomes. There are no obvious homologs to these
genes in any other organism. The C-terminal portions of
the genes which contain this domain are divergent and
some contain other yoelii-specific paralogous domains
such as PYST-C2 (TIGR01604).
Length = 82
Score = 26.9 bits (59), Expect = 2.8
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 151 TKKLKQQDDEAREKQRQFEKHQQMLNNNNNNNNITPPEELAKK 193
K++ + + EK K + LNNNN ++I + K
Sbjct: 39 IKEINRSN----EKNDIETKSEIQLNNNNPKDDIDDKDNPQKD 77
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 28.0 bits (63), Expect = 4.2
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 154 LKQQDDEAREKQRQFEKHQQMLNNNNNNNNITPPEELAKKVVN 196
L++Q D + ++ E Q+L N+ +T E+ ++ +
Sbjct: 225 LQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQS 267
>gnl|CDD|224698 COG1784, COG1784, Predicted membrane protein [Function unknown].
Length = 395
Score = 27.7 bits (62), Expect = 4.3
Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 22/129 (17%)
Query: 56 LGVIIGIVNSFVHVVMYSYYFLAALGPHMQKHLWW-----------KKYITRLQLIQFAI 104
LG + +V S + +++ Y L L P + + + R +L +
Sbjct: 100 LGSALAVVLSII-LLLPLYLLLGPLYPAIYPIIPVVLLTILAIMILYERGERNKLWALLV 158
Query: 105 IL-SYAVALLVNDCPLPKALNWIMAFQSTVF--SLLFANFYYKAYVRSPTKKLKQQDDEA 161
L S A+ + LP + ++ + +F LL +P+ KQ+D +
Sbjct: 159 FLLSGALGFVTFQGSLP-VGSPLLPLFTGLFGLPLLIEAL------SNPSSIPKQEDSKF 211
Query: 162 REKQRQFEK 170
++ K
Sbjct: 212 AISGKRLLK 220
>gnl|CDD|238233 cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel. The
ClC chloride channels catalyse the selective flow of Cl-
ions across cell membranes, thereby regulating
electrical excitation in skeletal muscle and the flow of
salt and water across epithelial barriers. This domain
is found in the halogen ions (Cl-, Br- and I-) transport
proteins of the ClC family. The ClC channels are found
in all three kingdoms of life and perform a variety of
functions including cellular excitability regulation,
cell volume regulation, membrane potential
stabilization, acidification of intracellular
organelles, signal transduction, transepithelial
transport in animals, and the extreme acid resistance
response in eubacteria. They lack any structural or
sequence similarity to other known ion channels and
exhibit unique properties of ion permeation and gating.
Unlike cation-selective ion channels, which form
oligomers containing a single pore along the axis of
symmetry, the ClC channels form two-pore homodimers with
one pore per subunit without axial symmetry. Although
lacking the typical voltage-sensor found in cation
channels, all studied ClC channels are gated (opened and
closed) by transmembrane voltage. The gating is
conferred by the permeating ion itself, acting as the
gating charge. In addition, eukaryotic and some
prokaryotic ClC channels have two additional C-terminal
CBS (cystathionine beta synthase) domains of putative
regulatory function.
Length = 383
Score = 27.1 bits (61), Expect = 6.9
Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 15 VIIGIVNSFV-HVVMYSYYFLAALGPHMQKHLWWKKYITRLQLGVIIGIVNSFVHVVMYS 73
+++G++ V + + Y + L + W + + G+++G++ F+ V+ S
Sbjct: 210 LLLGLLAGLVGVLFVRLLYKIERLFRRLPIPPWLRPALG----GLLLGLLGLFLPQVLGS 265
Query: 74 YYFLAALGPHMQKHLW 89
Y L + L
Sbjct: 266 GYGAILLALAGELSLL 281
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 27.1 bits (60), Expect = 6.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 158 DDEAREKQRQFEKHQQ 173
D E E QRQFE QQ
Sbjct: 2 DAELLELQRQFEFAQQ 17
>gnl|CDD|220897 pfam10883, DUF2681, Protein of unknown function (DUF2681). This
family of proteins is found in bacteria. Proteins in
this family are typically between 81 and 117 amino acids
in length.
Length = 87
Score = 25.4 bits (56), Expect = 7.7
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 131 STVFSLLFANFYYKAY-----VRSPTKKLKQQDDEAREKQRQFEKHQQMLNNNNNNNNIT 185
VF+ + A Y+K R + +Q E + + + + N N ++
Sbjct: 11 LAVFACILAYLYWKLKKAQRENRKLQAENEQLATEKAVAETEVKNAKVRQKNEENTRRLS 70
Query: 186 P 186
Sbjct: 71 R 71
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 26.7 bits (59), Expect = 8.3
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 150 PTKKLKQQDDEAREKQRQFEKHQQM 174
P +KL+++ E K R+ EK ++
Sbjct: 319 PAQKLQEERKEQLAKLRKEEKEREK 343
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.137 0.423
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,546,117
Number of extensions: 1004855
Number of successful extensions: 1680
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1664
Number of HSP's successfully gapped: 55
Length of query: 200
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 108
Effective length of database: 6,857,034
Effective search space: 740559672
Effective search space used: 740559672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.4 bits)