RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14394
         (200 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.7 bits (74), Expect = 0.068
 Identities = 42/279 (15%), Positives = 73/279 (26%), Gaps = 114/279 (40%)

Query: 1   MDGLVSRSPFS-EQGVIIGIVNSF-VHVVMYSYY------FLAALG-----------PHM 41
           MD   +R P +   G    + +   V    +         F   L            P  
Sbjct: 1   MDAYSTR-PLTLSHG---SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT 56

Query: 42  QKHLWWK--KYITRL----QLG----VIIGIVNSF---------VHVVMYSYYFLAALGP 82
              L  K   Y++ L    ++G    V+   +  F         +H         A L  
Sbjct: 57  PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA------LAAKLLQ 110

Query: 83  HMQKHLWWKKYITRLQLIQFAIILSYAVALLVNDCPLPKALNWIMAFQSTVFSLLF---- 138
                L   K +          I +Y  A ++   P  K  N          S LF    
Sbjct: 111 ENDTTLVKTKEL----------IKNYITARIMAKRPFDKKSN----------SALFRAVG 150

Query: 139 ---ANFY-------------------YKAY-------VRSPTKKLKQQDDEAREKQRQFE 169
              A                      Y+ Y       ++   + L +      + ++ F 
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210

Query: 170 KH---QQMLNNNNNNNNITPPEE-LAKKVVNF-----TQ 199
           +     + L N +N    TP ++ L    ++       Q
Sbjct: 211 QGLNILEWLENPSN----TPDKDYLLSIPISCPLIGVIQ 245



 Score = 28.1 bits (62), Expect = 2.2
 Identities = 25/147 (17%), Positives = 43/147 (29%), Gaps = 51/147 (34%)

Query: 94  ITRLQLIQFAIIL-----------SYAVALLVNDCPLPKAL------NWIMAFQSTVFSL 136
           I  +QL  + +             SY      +   L  A+      +W  +F  +V   
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW-ESFFVSVRKA 299

Query: 137 LFANFY-----YKAY-VRSPTKKLKQQDDEARE------------KQRQFEKHQQMLN-- 176
           +   F+     Y+AY   S    + +   E  E             Q Q + +    N  
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359

Query: 177 ------------NNNNNNNIT-PPEEL 190
                       N   N  ++ PP+ L
Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSL 386


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.8 bits (66), Expect = 0.59
 Identities = 23/178 (12%), Positives = 57/178 (32%), Gaps = 60/178 (33%)

Query: 34  LAALGPHMQKHL--W--WKKYITRLQLGVIIGIVNSFVHVVMYSYYFLAALGPHMQKHLW 89
           L+ +   ++  L  W  WK      +L  II                L  L P   + ++
Sbjct: 330 LSIIAESIRDGLATWDNWKHV-NCDKLTTIIES-------------SLNVLEPAEYRKMF 375

Query: 90  WKKYITRLQLIQFAIILSYAVALLVNDCPLP-KALN--W---------IMAFQSTVFSLL 137
                      + ++              +P   L+  W         ++  +   +SL+
Sbjct: 376 D----------RLSV--------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 138 FANF-YYKAYVRSPTKKLKQQDDEAREKQRQFEKHQQMLNNNN-----NNNNITPPEE 189
                     + S   +LK + +       ++  H+ ++++ N     +++++ PP  
Sbjct: 418 EKQPKESTISIPSIYLELKVKLEN------EYALHRSIVDHYNIPKTFDSDDLIPPYL 469


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 27.8 bits (61), Expect = 2.1
 Identities = 9/42 (21%), Positives = 23/42 (54%), Gaps = 5/42 (11%)

Query: 152 KKLKQQDDEAREKQRQF-EKHQQMLNNNNNNNNITPPEELAK 192
           K+L++ D  ++  ++++ EK ++ L   N   +    E++ K
Sbjct: 96  KRLQELDAASKVMEQEWREKAKKDLEEWNQRQS----EQVEK 133



 Score = 26.7 bits (58), Expect = 4.5
 Identities = 2/31 (6%), Positives = 12/31 (38%), Gaps = 4/31 (12%)

Query: 142 YYKAYVRSPTKKLKQQDDEAREKQRQFEKHQ 172
           + +      ++++++     R   + F +  
Sbjct: 123 WNQRQ----SEQVEKNKINNRIADKAFYQQP 149


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,158,011
Number of extensions: 176850
Number of successful extensions: 291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 17
Length of query: 200
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,216,824
Effective search space: 468067464
Effective search space used: 468067464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.6 bits)