RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14394
         (200 letters)



>d2oeqa1 a.281.1.2 (A:3-115) YheA-like protein {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 113

 Score = 28.1 bits (63), Expect = 0.31
 Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 143 YKAYVRSPTKKLKQQDDEAREKQRQFEKHQQMLNNNNNNNNITPPEELAK 192
           ++   R+   +  ++D+ A          Q  L+          P+E+ +
Sbjct: 20  FQQLKRA--YEDVRRDETAYRMFANVRDIQLRLHEKQMRGAAILPDEIEQ 67


>d2piha1 a.281.1.1 (A:2-124) Uncharacterized protein YmcA {Bacillus
           subtilis [TaxId: 1423]}
          Length = 123

 Score = 28.2 bits (63), Expect = 0.36
 Identities = 6/52 (11%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 143 YKAYVRSPTKKLKQQDDEAREKQRQFEKHQQMLNNNNNNNNITPPEELAKKV 194
              + R   +    ++D+      Q +  Q+   N  +       +++  K+
Sbjct: 25  VDFFKR--AEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKI 74


>d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 111

 Score = 27.7 bits (62), Expect = 0.38
 Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 2/50 (4%)

Query: 143 YKAYVRSPTKKLKQQDDEAREKQRQFEKHQQMLNNNNNNNNITPPEELAK 192
           YKA      K     D EA +    +   Q+ +        +      AK
Sbjct: 21  YKAVKA--AKDAIAADAEASKIFTDYLAFQEEIQKLAQTGQMPDASFQAK 68


>d2oeea1 a.281.1.2 (A:3-112) Hypothetical protein YheA {Bacillus
           subtilis [TaxId: 1423]}
          Length = 110

 Score = 27.3 bits (61), Expect = 0.53
 Identities = 7/50 (14%), Positives = 12/50 (24%), Gaps = 2/50 (4%)

Query: 143 YKAYVRSPTKKLKQQDDEAREKQRQFEKHQQMLNNNNNNNNITPPEELAK 192
           +              D+ A+     F   Q  L            EE+ +
Sbjct: 20  FTRLKN--LYDEVNADESAKRMFENFRDVQLRLQQKQMAGEEITQEEVTQ 67


>d2d3qa1 d.58.4.14 (A:4-442) Decolorizing peroxidase DyP {Geotrichum
           candidum [TaxId: 27317]}
          Length = 439

 Score = 25.5 bits (55), Expect = 5.3
 Identities = 6/25 (24%), Positives = 6/25 (24%)

Query: 165 QRQFEKHQQMLNNNNNNNNITPPEE 189
              F   Q    NN N     P   
Sbjct: 361 GNGFRFQQINWANNANFPFSKPITP 385


>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC
           {Escherichia coli [TaxId: 562]}
          Length = 156

 Score = 24.3 bits (53), Expect = 9.2
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 119 LPKALNWIMAFQSTVFSLLFANFY 142
           LP + +W M ++  V + +F N +
Sbjct: 53  LPFSTDWFMTWEQNVHASMFCNAW 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 785,718
Number of extensions: 34751
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 10
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)