BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14395
         (471 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VE3|A Chain A, Retinoic Acid Bound Cyanobacterial Cyp120a1
 pdb|2VE3|B Chain B, Retinoic Acid Bound Cyanobacterial Cyp120a1
 pdb|2VE4|A Chain A, Substrate Free Cyanobacterial Cyp120a1
 pdb|2VE4|B Chain B, Substrate Free Cyanobacterial Cyp120a1
          Length = 444

 Score = 35.8 bits (81), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 24/145 (16%)

Query: 194 MSSWCQYEALKYISFPAQVLAKSCKILAVMFMGKLVSAKPKSYEYFE-YISALY---ISF 249
           +  W +  A + I +P Q+   +  + A +FMG+ VS  P+ + +FE YI  L+   I  
Sbjct: 132 LEQWGK--ANEVIWYP-QLRRMTFDVAATLFMGEKVSQNPQLFPWFETYIQGLFSLPIPL 188

Query: 250 PAQVLAKSCKILAVMF--MGKLVSAK---PKSYEYFEYISALVIXXXXXXXXXXXXDTSD 304
           P  +  KS +  A++   + K++ A+   P S E      AL I            D ++
Sbjct: 189 PNTLFGKSQRARALLLAELEKIIKARQQQPPSEE-----DALGI-------LLAARDDNN 236

Query: 305 KVGKTTTLSGVILLALYLSCDSFTS 329
           +      L   ILL L+   ++ TS
Sbjct: 237 QPLSLPELKDQILLLLFAGHETLTS 261


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.138    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,421,313
Number of Sequences: 62578
Number of extensions: 414439
Number of successful extensions: 906
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 905
Number of HSP's gapped (non-prelim): 3
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)