Query psy14395
Match_columns 471
No_of_seqs 299 out of 1611
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 18:45:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.2 2.3E-06 8E-11 75.5 7.0 67 390-456 38-105 (137)
2 3b5d_A Multidrug transporter E 97.6 0.00034 1.2E-08 59.1 9.6 66 390-455 38-104 (110)
3 3b5d_A Multidrug transporter E 96.8 0.017 6E-07 48.5 12.4 42 256-299 64-105 (110)
4 2i68_A Protein EMRE; transmemb 96.4 0.012 4E-07 51.7 8.4 42 256-299 64-105 (137)
5 2rdd_B UPF0092 membrane protei 36.2 34 0.0012 22.6 3.2 21 444-464 10-30 (37)
6 2jwa_A Receptor tyrosine-prote 25.5 46 0.0016 23.1 2.5 13 446-458 26-38 (44)
7 3l1l_A Arginine/agmatine antip 17.4 81 0.0028 31.3 3.5 24 438-461 410-433 (445)
8 3tij_A NUPC family protein; me 10.4 3E+02 0.01 28.0 5.3 50 249-298 4-54 (424)
9 2jp3_A FXYD domain-containing 8.4 2.7E+02 0.0093 20.9 3.0 32 439-470 23-54 (67)
10 3rko_J NADH-quinone oxidoreduc 8.2 1E+03 0.036 21.0 9.9 168 282-470 7-174 (184)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.19 E-value=2.3e-06 Score=75.55 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHH-HHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHhh
Q psy14395 390 ISSAAGQLFVFFTIYKFGAIVFTII-MTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCK 456 (471)
Q Consensus 390 l~~~lgq~~if~~i~~~galt~sii-~t~rkv~sillSvllFge~lt~~~~iG~~lV~~Gv~l~~~~k 456 (471)
++..++.++..+++++.++.+...+ ..+.++++.++|+++|||++|+.+++|+++++.|+++.+..+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4455667788889999999988777 899999999999999999999999999999999999887654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.58 E-value=0.00034 Score=59.13 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHH-HHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHh
Q psy14395 390 ISSAAGQLFVFFTIYKFGAIVFTII-MTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYC 455 (471)
Q Consensus 390 l~~~lgq~~if~~i~~~galt~sii-~t~rkv~sillSvllFge~lt~~~~iG~~lV~~Gv~l~~~~ 455 (471)
++..++.++..+++++.+..+...+ ..+.++++.++|+++|||++|+.+++|+++++.|+..-...
T Consensus 38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3445556677788999888887666 89999999999999999999999999999999999887653
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.83 E-value=0.017 Score=48.48 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=33.5
Q ss_pred hhhhHHHHHHHHHHhhCCCccccHHHHHHHHHHHHHhHHHhccC
Q psy14395 256 KSCKILAVMFMGKLVSAKPKSYEYFEYISALVISLGMLLFMLSS 299 (471)
Q Consensus 256 Ks~~pi~v~ll~~lf~~~~krys~~~~lsvili~~GV~lf~~~~ 299 (471)
.+..|+.++++++++++ |+.++.+++++.++++|+.+....+
T Consensus 64 ~g~~~v~~~l~~~~~~~--E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 64 SGVGIVLISLLSWGFFG--QRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred hhHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44556666666666666 9999999999999999999887644
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.36 E-value=0.012 Score=51.70 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=27.1
Q ss_pred hhhhHHHHHHHHHHhhCCCccccHHHHHHHHHHHHHhHHHhccC
Q psy14395 256 KSCKILAVMFMGKLVSAKPKSYEYFEYISALVISLGMLLFMLSS 299 (471)
Q Consensus 256 Ks~~pi~v~ll~~lf~~~~krys~~~~lsvili~~GV~lf~~~~ 299 (471)
....|+.++++++++++ |+.++.++++++++++|+.+....+
T Consensus 64 ~~l~pv~~~l~g~l~lg--E~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 64 SGVGIVLISLLSWGFFG--QRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34456666666666666 9999999999999999999987644
No 5
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=36.17 E-value=34 Score=22.56 Aligned_cols=21 Identities=10% Similarity=0.126 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhh
Q psy14395 444 MVLMAVLLQAYCKLRKASLKK 464 (471)
Q Consensus 444 lV~~Gv~l~~~~k~r~k~~~~ 464 (471)
+++.++++...-+.++|++|+
T Consensus 10 v~~~~ifYFl~iRPQ~Kr~K~ 30 (37)
T 2rdd_B 10 VVFGLIFYFMILRPQQKRTKE 30 (37)
T ss_dssp HHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHH
Confidence 344455444444444444443
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=25.53 E-value=46 Score=23.06 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=5.4
Q ss_pred HHHHHHHHHhhhh
Q psy14395 446 LMAVLLQAYCKLR 458 (471)
Q Consensus 446 ~~Gv~l~~~~k~r 458 (471)
+.|+.+..|.|+|
T Consensus 26 i~~l~~~~~~RRR 38 (44)
T 2jwa_A 26 VLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhheehh
Confidence 3344444444443
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=17.37 E-value=81 Score=31.28 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhh
Q psy14395 438 GILGILMVLMAVLLQAYCKLRKAS 461 (471)
Q Consensus 438 ~~iG~~lV~~Gv~l~~~~k~r~k~ 461 (471)
.+.|..++..|+.+|.+.++|+++
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Confidence 456888888998888876655443
No 8
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter, drug transport uridine, nucleosides, membrane protein; HET: URI DMU; 2.44A {Vibrio cholerae}
Probab=10.40 E-value=3e+02 Score=28.02 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=0.0
Q ss_pred hhhHHHHhh-hhHHHHHHHHHHhhCCCccccHHHHHHHHHHHHHhHHHhcc
Q psy14395 249 FPAQVLAKS-CKILAVMFMGKLVSAKPKSYEYFEYISALVISLGMLLFMLS 298 (471)
Q Consensus 249 ~~~~~i~Ks-~~pi~v~ll~~lf~~~~krys~~~~lsvili~~GV~lf~~~ 298 (471)
+|+.....+ ...+....++|++.++||+.+||.++..+.+=..++++.+.
T Consensus 4 ~~~M~~l~sl~Gi~v~l~ia~l~S~nrk~I~wr~V~~gl~lQ~~la~~vL~ 54 (424)
T 3tij_A 4 VPRMSLFMSLIGMAVLLGIAVLLSSNRKAINLRTVGGAFAIQFSLGAFILY 54 (424)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHCSCGGGCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHHHHhc
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=8.38 E-value=2.7e+02 Score=20.87 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhcccC
Q psy14395 439 ILGILMVLMAVLLQAYCKLRKASLKKKLNQAE 470 (471)
Q Consensus 439 ~iG~~lV~~Gv~l~~~~k~r~k~~~~k~~~~~ 470 (471)
+++.++.+.|+.+....|-|-|.++|.+...|
T Consensus 23 ifA~vLfi~GI~iilS~kcrCk~~qk~~~~~~ 54 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSGKCKCRRNHTPSSLPE 54 (67)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHTCCTTTSTT
T ss_pred hhHHHHHHHHHHHHHcCcccccCCCCCCCCCc
No 10
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=8.21 E-value=1e+03 Score=21.01 Aligned_cols=168 Identities=10% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHhccCCCcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHH
Q psy14395 282 YISALVISLGMLLFMLSSLDTSDKVGKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVS 361 (471)
Q Consensus 282 ~lsvili~~GV~lf~~~~~~~~~~~~~~~~~~G~~lll~sl~~dal~~~~q~~l~~~~~~s~~~mmf~~~l~s~i~~l~~ 361 (471)
.++.+.+..|+.+.. ..+.....+.+....++-|......+.-+ +...|.+-|...+..++.+..
T Consensus 7 ~~a~~~i~~al~vv~-----------~~n~v~s~l~Li~~f~~~a~l~~ll~a~F----la~~qilVYvGAi~VLflFvv 71 (184)
T 3rko_J 7 ICGLIAILATLRVIT-----------HTNPVHALLYLIISLLAISGVFFSLGAYF----AGALEIIVYAGAIMVLFVFVV 71 (184)
T ss_dssp HHHHHHHHHHHHHHH-----------CCSHHHHHHHHHHHHHHHHHHHHHTTCHH----HHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------cCcHHHHHHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhcchhhhhhhhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHH
Q psy14395 362 LLQQGGFYQSLHFMLQFPSFTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILG 441 (471)
Q Consensus 362 li~~g~l~~~~~f~~~~p~~~~~ill~~l~~~lgq~~if~~i~~~galt~sii~t~rkv~sillSvllFge~lt~~~~iG 441 (471)
...+.+..+.-+...+.+...+..........+........-....+..-. ..+++ -+|..+|++-+=+.+..|
T Consensus 72 Ml~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~l~~~~~~i~~~~~~~~~~~-~~n~~-----~iG~~Lft~Y~lpFElaS 145 (184)
T 3rko_J 72 MMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQGIDGT-PISAK-----AVGITLFGPYVLAVELAS 145 (184)
T ss_dssp HHHCCSSTTHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCC-CCCHH-----HHHHHHTTTSHHHHHHHH
T ss_pred HHcCCcchhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhcCcccccCCC-cccHH-----HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhcccC
Q psy14395 442 ILMVLMAVLLQAYCKLRKASLKKKLNQAE 470 (471)
Q Consensus 442 ~~lV~~Gv~l~~~~k~r~k~~~~k~~~~~ 470 (471)
+.+..+=+......|++++.++--+.+.+
T Consensus 146 vlLLvAmIGAIvLarr~~~~~~~~~~~~~ 174 (184)
T 3rko_J 146 MLLLAGLVVAFHVGREERAGEVLSNRKDD 174 (184)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSCC------
T ss_pred HHHHHHHHHHHHHHhcccccccccccchh
Done!