Query psy14395
Match_columns 471
No_of_seqs 299 out of 1611
Neff 6.8
Searched_HMMs 13730
Date Fri Aug 16 18:46:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14395.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14395hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga7 f.35.1.1 (A:7-37,A:331 12.8 2E+02 0.015 23.4 6.9 33 420-452 77-109 (199)
2 d1iwga8 f.35.1.1 (A:513-566,A: 11.0 3.9E+02 0.028 21.8 11.3 30 421-450 96-125 (222)
3 d1pv7a_ f.38.1.2 (A:) Lactose 9.6 4.5E+02 0.033 21.5 10.6 6 36-41 8-13 (417)
4 d1fftb2 f.17.2.1 (B:27-117) Cy 6.3 40 0.0029 24.7 -0.7 24 441-464 27-50 (91)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 5.8 1.7E+02 0.012 21.3 2.8 22 440-461 37-58 (100)
6 d3ehbb2 f.17.2.1 (B:1-107) Bac 4.5 1.4E+02 0.01 22.1 1.6 22 440-461 43-64 (107)
7 d2e74g1 f.23.26.1 (G:9-35) Pet 4.3 2.9E+02 0.021 15.1 2.3 18 440-457 3-21 (27)
8 d2iuba2 f.17.3.1 (A:286-349) M 3.4 3.8E+02 0.028 17.4 3.0 11 57-67 54-64 (64)
9 d1rzhh2 f.23.10.1 (H:11-35) Ph 3.0 2.3E+02 0.017 15.5 1.1 11 57-67 15-25 (26)
10 d1jb0i_ f.23.17.1 (I:) Subunit 2.8 3.5E+02 0.025 16.2 1.9 14 258-271 19-32 (38)
No 1
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=12.82 E-value=2e+02 Score=23.36 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHH
Q psy14395 420 GLAILLSCIIYAHPISLLGILGILMVLMAVLLQ 452 (471)
Q Consensus 420 v~sillSvllFge~lt~~~~iG~~lV~~Gv~l~ 452 (471)
++.......++|.+++.....+..+.++...-+
T Consensus 77 i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 77 LLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 333444456778888887777776666654433
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=11.05 E-value=3.9e+02 Score=21.83 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCCcchhhHHHHHHHHHHHH
Q psy14395 421 LAILLSCIIYAHPISLLGILGILMVLMAVL 450 (471)
Q Consensus 421 ~sillSvllFge~lt~~~~iG~~lV~~Gv~ 450 (471)
...+.+..+.+.+++....+|..+.++...
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v 125 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIGLSA 125 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhhhhh
Confidence 345567778899999999888877665543
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=9.56 E-value=4.5e+02 Score=21.55 Aligned_cols=6 Identities=33% Similarity=1.198 Sum_probs=2.5
Q ss_pred chHHHH
Q psy14395 36 EAWLFR 41 (471)
Q Consensus 36 ~~~~~~ 41 (471)
++|++-
T Consensus 8 ~~~~l~ 13 (417)
T d1pv7a_ 8 NFWMFG 13 (417)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 344443
No 4
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.32 E-value=40 Score=24.74 Aligned_cols=24 Identities=8% Similarity=0.063 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhh
Q psy14395 441 GILMVLMAVLLQAYCKLRKASLKK 464 (471)
Q Consensus 441 G~~lV~~Gv~l~~~~k~r~k~~~~ 464 (471)
.+.++..|+..|...|.|+++.++
T Consensus 27 iv~v~V~~~~~~~~~ryR~~~~~~ 50 (91)
T d1fftb2 27 IVVIPAILMAVGFAWKYRASNKDA 50 (91)
T ss_dssp TTTTHHHHHHHTTTTTTTTSTTTC
T ss_pred HHHHHHHHHHHhhheeeeccCCcc
Confidence 345566777778777877665544
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.83 E-value=1.7e+02 Score=21.31 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q psy14395 440 LGILMVLMAVLLQAYCKLRKAS 461 (471)
Q Consensus 440 iG~~lV~~Gv~l~~~~k~r~k~ 461 (471)
.++.++..|+..|...|+|+|+
T Consensus 37 ~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 37 AAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHhhhhhccC
Confidence 3445566677777777766554
No 6
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=4.48 E-value=1.4e+02 Score=22.08 Aligned_cols=22 Identities=9% Similarity=0.292 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q psy14395 440 LGILMVLMAVLLQAYCKLRKAS 461 (471)
Q Consensus 440 iG~~lV~~Gv~l~~~~k~r~k~ 461 (471)
.++.+...|+..|...|.|+++
T Consensus 43 ~~I~~~V~~~~~~~~~~~r~~~ 64 (107)
T d3ehbb2 43 TAVTIFVCLLLLICIVRFNRRA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHSBTTT
T ss_pred HHHHHHHHHHHHHHhhhhhccC
Confidence 3444556667777776666554
No 7
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.26 E-value=2.9e+02 Score=15.11 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=9.7
Q ss_pred HHHHH-HHHHHHHHHHhhh
Q psy14395 440 LGILM-VLMAVLLQAYCKL 457 (471)
Q Consensus 440 iG~~l-V~~Gv~l~~~~k~ 457 (471)
+|..+ .++|++...|..+
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 44443 4556666666544
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.42 E-value=3.8e+02 Score=17.39 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=6.4
Q ss_pred HHHHHHHhhcc
Q psy14395 57 YILYRYVYTRH 67 (471)
Q Consensus 57 ~~~~~~~~~~~ 67 (471)
.+++.++||||
T Consensus 54 ~~~~~~f~rkk 64 (64)
T d2iuba2 54 VIMVVYFKKKK 64 (64)
T ss_dssp HHHHTTTTSCC
T ss_pred HHHHHHHhccC
Confidence 34556667664
No 9
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.02 E-value=2.3e+02 Score=15.53 Aligned_cols=11 Identities=27% Similarity=0.208 Sum_probs=7.5
Q ss_pred HHHHHHHhhcc
Q psy14395 57 YILYRYVYTRH 67 (471)
Q Consensus 57 ~~~~~~~~~~~ 67 (471)
.+++.|+++.|
T Consensus 15 alli~ylqten 25 (26)
T d1rzhh2 15 AGLIYYLQTEN 25 (26)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHhccc
Confidence 35677887765
No 10
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=2.84 E-value=3.5e+02 Score=16.18 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHhh
Q psy14395 258 CKILAVMFMGKLVS 271 (471)
Q Consensus 258 ~~pi~v~ll~~lf~ 271 (471)
|..+|+.++|.+|.
T Consensus 19 ~wl~p~vvMglLFi 32 (38)
T d1jb0i_ 19 CWLMPTVVMGLLFL 32 (38)
T ss_dssp HTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhe
Confidence 55677778887764
Done!