RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14395
(471 letters)
>gnl|CDD|219846 pfam08449, UAA, UAA transporter family. This family includes
transporters with a specificity for
UDP-N-acetylglucosamine.
Length = 303
Score = 242 bits (621), Expect = 4e-77
Identities = 112/355 (31%), Positives = 170/355 (47%), Gaps = 58/355 (16%)
Query: 112 LLFCTAGLQGSYLTWGVLQEKIMTQTYTNIMLEEGKFRDSQFLVFVNRILALVVSGLSLL 171
L C +G+ G Y + GVLQE IMT+ Y + L F + +V L LL
Sbjct: 1 FLICISGIFGGYCSNGVLQELIMTREYGS--------PFGNLLTFAQFLFISLVGLLYLL 52
Query: 172 II-NQPRHTVPLYKYGFCSFTNIMSSWCQYEALKYISFPAQVLAKSCKILAVMFMGKLVS 230
+ +PL Y T +SS EALKYIS+P V+ KSCK++ VM +G L+
Sbjct: 53 LFKKLKPRKIPLKTYVLIVATFFLSSVLNNEALKYISYPTHVIFKSCKLIPVMILGILIY 112
Query: 231 AKPKSYEYFEYISALYISFPAQVLAKSCKILAVMFMGKLVSAKPKSYEYFEYISALVISL 290
K Y +Y+SAL+I+L
Sbjct: 113 G-------------------------------------------KRYSSLQYLSALLITL 129
Query: 291 GMLLFMLSSLDTSDKVGKTTTLS---GVILLALYLSCDSFTSNWQGVLFESYKVTSLQMM 347
G+++F L+S K K TT S G+ LL L D+ T N Q L++ Y S +MM
Sbjct: 130 GVIIFTLAS-AKDSKNSKLTTFSDNVGIALLFGALLMDALTGNTQEKLYKKYGKHSKEMM 188
Query: 348 FGTNLFSCLFTAVSLLQQGG--FYQSLHFMLQFPSFTLDCILLSISSAAGQLFVFFTIYK 405
F ++L S F + LL + + F L+ PS +L S++ GQ FVF+ I +
Sbjct: 189 FYSHLLSLPFFLLGLLDIRTGLLFSAESFCLRHPSVLFYLLLNSLTQYVGQFFVFYLISE 248
Query: 406 FGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLRKA 460
FGA+ T++ T+R+ +++LLS +++ +P++L LG L+V + + L AY K +KA
Sbjct: 249 FGALTVTLVTTLRKFVSLLLSVLLFGNPLTLQQWLGTLLVFLGIFLYAYLKKKKA 303
>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family. This family
includes transporters with a specificity for triose
phosphate.
Length = 149
Score = 38.3 bits (90), Expect = 0.002
Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 337 ESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGF-----YQSLHFMLQFPSFTLDCILLSIS 391
+ K+ L++++ + + + LL GF L+ + L +L +
Sbjct: 27 KGTKLNVLELLYYLSPVAFIVLLPGLLFSEGFKLGKFILKFFGDLKTSRYVLLLLLSGVL 86
Query: 392 SAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLL 451
+ L F + + + ++ TV++ + I+LS II+ P++ L ILG+ + ++ V+L
Sbjct: 87 AFLYNLSAFGLLGRTSPLTSSVAGTVKRVVVIVLSVIIFGDPVTFLNILGLAIAILGVVL 146
>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component
[Posttranslational modification, protein turnover,
chaperones].
Length = 491
Score = 33.4 bits (76), Expect = 0.27
Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 24/154 (15%)
Query: 312 LSGVILLALYLSC-DSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQ 370
L+ ++L L + ++ L + +++ + + G N+ LF ++ + +
Sbjct: 8 LASLVLFGLSVLLSLYSSATVYSALVMTSQLSPVHITIGLNVILLLFFLIANALKTLLFG 67
Query: 371 SL------HFMLQFPSFTLDCILLSISSAAGQLF---VFFTIYKFGAI-----VFTIIMT 416
SL Q TL ILL+IS +F + F+ + + VF I++
Sbjct: 68 SLRTFELELLYEQLW-ITLTEILLAIS-----VFREAISFSFFMLLSTLLFAKVFHWILS 121
Query: 417 VRQGLAILLSCIIYAHPISLLGILGILMVLMAVL 450
R + S H S L+++L
Sbjct: 122 FRTERLQIQSTDQRFHIFSR---FSCAYFLLSIL 152
>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family. This family
includes many hypothetical membrane proteins of unknown
function. Many of the proteins contain two copies of the
aligned region. The family used to be known as DUF6.
Length = 126
Score = 29.1 bits (66), Expect = 2.4
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 390 ISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAV 449
+A G L F+ + A ++I ++ ++LS ++ ++L +LGI+++L+ V
Sbjct: 62 FGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGV 121
Query: 450 LL 451
LL
Sbjct: 122 LL 123
>gnl|CDD|215623 PLN03190, PLN03190, aminophospholipid translocase; Provisional.
Length = 1178
Score = 30.3 bits (68), Expect = 3.1
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 284 SALVISLGMLLFMLSSLDTSDKVGKTTTLSGVILLALYLSCDSFTSNW 331
SA+V + + + S++D S +G TL+ VIL+ L+L+ D NW
Sbjct: 1030 SAVVFFVPLFAYWASTIDGS-SIGDLWTLAVVILVNLHLAMDIIRWNW 1076
>gnl|CDD|217521 pfam03378, CAS_CSE1, CAS/CSE protein, C-terminus. Mammalian
cellular apoptosis susceptibility (CAS) proteins are
homologous to the yeast chromosome-segregation protein,
CSE1. This family aligns the C-terminal halves
(approximately). CAS is involved in both cellular
apoptosis and proliferation. Apoptosis is inhibited in
CAS-depleted cells, while the expression of CAS
correlates to the degree of cellular proliferation. Like
CSE1, it is essential for the mitotic checkpoint in the
cell cycle (CAS depletion blocks the cell in the G2
phase), and has been shown to be associated with the
microtubule network and the mitotic spindle, as is the
protein MEK, which is thought to regulate the
intracellular localisation (predominantly nuclear vs.
predominantly cytosolic) of CAS. In the nucleus, CAS
acts as a nuclear transport factor in the importin
pathway. The importin pathway mediates the nuclear
transport of several proteins that are necessary for
mitosis and further progression. CAS is therefore
thought to affect the cell cycle through its effect on
the nuclear transport of these proteins. Since apoptosis
also requires the nuclear import of several proteins
(such as P53 and transcription factors), it has been
suggested that CAS also enables apoptosis by
facilitating the nuclear import of at least a subset of
these essential proteins.
Length = 435
Score = 28.8 bits (65), Expect = 7.4
Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 227 KLVSAKPKSYEYFEYISALYISFPAQVLAKSCK-ILAVMFMGKLVSAKPKSY 277
KL+++K ++ F + ++ FP +VL K I +++F +L ++K + +
Sbjct: 209 KLIASKANDHQGFYLLESVIEYFPPEVLEPYFKTIFSLLF-QRLQNSKTEKF 259
>gnl|CDD|221239 pfam11812, DUF3333, Domain of unknown function (DUF3333). This
family of proteins are functionally uncharacterized.
This family is only found in bacteria. This presumed
domain is typically between 116 to 159 amino acids in
length.
Length = 155
Score = 27.6 bits (62), Expect = 9.5
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 283 ISALVISLGMLLFMLSS 299
++A++I L L+ +L S
Sbjct: 20 LAAILIGLAFLVILLGS 36
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.139 0.407
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,361,524
Number of extensions: 2296018
Number of successful extensions: 3294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3262
Number of HSP's successfully gapped: 140
Length of query: 471
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 371
Effective length of database: 6,502,202
Effective search space: 2412316942
Effective search space used: 2412316942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (27.2 bits)