RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14395
         (471 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 54.3 bits (130), Expect = 7e-08
 Identities = 76/483 (15%), Positives = 151/483 (31%), Gaps = 156/483 (32%)

Query: 51  TIVLPGYILYRYVYTRHDFADAGCIGYVITACFKDNTKSYAEEKEQLAGSVKSSVKQDAL 110
            +++P    +     +  F               + T+ +A + E       +  +    
Sbjct: 19  VLLVPTASFFIASQLQEQF----------NKILPEPTEGFAADDEP-----TTPAELVGK 63

Query: 111 LLLFCTA----GLQGSYLTWGVLQEKIMTQTYTNIMLEEGKFRDSQFLVFVNRILALVVS 166
            L + ++       G +    VL           + L E  F ++ +L   N I AL   
Sbjct: 64  FLGYVSSLVEPSKVGQFDQ--VLN----------LCLTE--F-ENCYL-EGNDIHALAAK 107

Query: 167 GLSLLIINQPRHTVPL--YKYGFCSFTNIMSSWCQYEALKYISFPAQVLAKSCKILAVMF 224
            L        +    +  Y                  AL    F A V   + +++A+ F
Sbjct: 108 LLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSAL----FRA-VGEGNAQLVAI-F 160

Query: 225 MGKLVSAKPKSYEYFEYISALYISFPAQV---LAKSCKILAVMFMGKLVSAKPKSYEYF- 280
            G+       + +YFE +  LY ++   V   +  S + L+     +L+     + + F 
Sbjct: 161 GGQ-----GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS-----ELIRTTLDAEKVFT 210

Query: 281 ------------------EYISALVISLGML-LFMLSS-LDTSDKVGKT----------- 309
                             +Y+ ++ IS  ++ +  L+  + T+  +G T           
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270

Query: 310 TTLSGVILLALYLS-CDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGF 368
           T  S  ++ A+ ++  DS    W     ES+             F  +  A+++L    F
Sbjct: 271 TGHSQGLVTAVAIAETDS----W-----ESF-------------FVSVRKAITVL----F 304

Query: 369 YQSLHFMLQFPSFTLDCILLSISSAAGQ------LFVFFTIYKFG---AIVFTIIMTVRQ 419
           +  +     +P+ +L   +L  S    +      L +             V   +     
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI------SNLTQEQVQDYVNKTNS 358

Query: 420 GL------AILL-----SCIIYAHPISLLGILGILMVLMAVLLQAYCKLRKASLKKKLNQ 468
            L       I L     + ++   P SL G            L     LRKA     L+Q
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPPQSLYG------------LNLT--LRKAKAPSGLDQ 404

Query: 469 AEV 471
           + +
Sbjct: 405 SRI 407



 Score = 36.2 bits (83), Expect = 0.030
 Identities = 36/241 (14%), Positives = 64/241 (26%), Gaps = 94/241 (39%)

Query: 56   GYILY------RYVYTRHDFADAGCIGYVITACFKDNTKSYAEEKEQLAGSVKSSVKQDA 109
            G  LY      + V+ R D       G+ I     +N  +                    
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVN-------------------- 1671

Query: 110  LLLLFCTAGLQGSYLTWGVLQEKIMTQTYTNIMLEEGKFRDSQFLVFVNRILALVVSGLS 169
            L + F   G +G          K + + Y+ ++ E       +      +I   +    +
Sbjct: 1672 LTIHF--GGEKG----------KRIRENYSAMIFETIVDGKLKTE----KIFKEINEHST 1715

Query: 170  LLIINQPRHTVPLYKYGFCS---FTNIMSSWCQYEALKYISFPAQVLAKSCKILAVMFMG 226
                   +        G  S   FT       Q         PA +          +   
Sbjct: 1716 SYTFRSEK--------GLLSATQFT-------Q---------PA-LTLMEKAAFEDL--- 1747

Query: 227  KLVSAKPKSYEYF------EYISAL-----YISFPAQVLAKSCKILAVMFMGKLV-SAKP 274
            K     P     F      EY +AL      +S  + V     +++   + G  +  A P
Sbjct: 1748 KSKGLIPADA-TFAGHSLGEY-AALASLADVMSIESLV-----EVVF--YRGMTMQVAVP 1798

Query: 275  K 275
            +
Sbjct: 1799 R 1799


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 40.2 bits (93), Expect = 0.001
 Identities = 63/386 (16%), Positives = 113/386 (29%), Gaps = 126/386 (32%)

Query: 92  EEKEQLAGSVKSSVKQDALLLL-----------F---CTAGLQGSYLT---WGVLQEKIM 134
             + +L   +KS   ++ LL+L           F   C   L    LT     V  + + 
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-L----LTTRFKQVT-DFLS 282

Query: 135 TQTYTNIMLEEGK--FRDSQ----FLVFVN-----------RILALVVSGLSLLIINQPR 177
             T T+I L+         +     L +++                 +S ++  I +   
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 178 HTVPLYKYGFCSFTNIMSSWCQYEALK-------YISF---------PAQVLA------- 214
                        T I+ S      L+       +            P  +L+       
Sbjct: 343 TWDNWKHVNCDKLTTIIES--SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 215 -KSCKILAVMFMGK-LVSAKPKSYEYFEYISALYISFPAQVLAKSCKILAVMFMGKLVSA 272
                ++        LV  +PK       I ++Y+      L    +    +    +V  
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTI--SIPSIYLE-----LKVKLENEYALHR-SIVDH 452

Query: 273 --KPKSYE-----------YF-EYI----SALVISLGMLLFMLSSLD---TSDKVGKTTT 311
              PK+++           YF  +I      +     M LF +  LD      K+   +T
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 312 L---SGVIL-----LALYLS--CDSFTSNWQGVLFESYKVTSLQMMF----GTNLFSCLF 357
               SG IL     L  Y    CD+         +E   V ++ + F      NL    +
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPK------YERL-VNAI-LDFLPKIEENLICSKY 564

Query: 358 TAVSLLQ------QGGFYQSLHFMLQ 377
           T   LL+          ++  H  +Q
Sbjct: 565 T--DLLRIALMAEDEAIFEEAHKQVQ 588


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0792    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,737,517
Number of extensions: 386598
Number of successful extensions: 794
Number of sequences better than 10.0: 1
Number of HSP's gapped: 782
Number of HSP's successfully gapped: 12
Length of query: 471
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 374
Effective length of database: 3,993,456
Effective search space: 1493552544
Effective search space used: 1493552544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.4 bits)