RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14395
         (471 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score = 28.2 bits (62), Expect = 2.1
 Identities = 29/212 (13%), Positives = 66/212 (31%), Gaps = 3/212 (1%)

Query: 238 YFEYISALYISFPAQVLAKSCKILAVMFMGKLVSAKPKSYEYFEYISALVISLGMLLFML 297
            F     L ++     +       A+ F+  LV   P +    + I         L   +
Sbjct: 91  VFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKE--FLYSYI 148

Query: 298 SSLDTSDKVGKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLF 357
                 + + K +  + ++ L       S          E +   ++  +F   +F  + 
Sbjct: 149 GVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIR 208

Query: 358 TAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTV 417
             +     G     L+F+   P F          +A GQ+F   ++     I +   +  
Sbjct: 209 VFLLETPNGTAADGLNFL-WTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRK 267

Query: 418 RQGLAILLSCIIYAHPISLLGILGILMVLMAV 449
            Q + +        +  + + + G + +  AV
Sbjct: 268 DQDIVLSGLTAATLNEKAEVILGGSISIPAAV 299


>d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3
           (RRP40) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 88

 Score = 26.0 bits (57), Expect = 3.4
 Identities = 9/55 (16%), Positives = 21/55 (38%)

Query: 387 LLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILG 441
            LS  S  G         + G +++   +   + +   + CI      + +G++G
Sbjct: 33  SLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRANGMGVIG 87


>d1h3la_ a.177.1.1 (A:) Sigma factor SigR {Streptomyces coelicolor
          a3(2) [TaxId: 100226]}
          Length = 75

 Score = 25.2 bits (55), Expect = 5.1
 Identities = 7/28 (25%), Positives = 13/28 (46%)

Query: 19 FTYLFNKLVTSLEDSYHEAWLFRIVLNL 46
          +   +       E +  +AWL+RI+ N 
Sbjct: 42 YAKAYASFHQFREGTNLKAWLYRILTNT 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,606,708
Number of extensions: 71088
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 6
Length of query: 471
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 382
Effective length of database: 1,185,626
Effective search space: 452909132
Effective search space used: 452909132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.5 bits)