BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy144
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GB5|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn
pdb|3GFD|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Mono-Iodotyrosine (Mit)
pdb|3GFD|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Mono-Iodotyrosine (Mit)
pdb|3GH8|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|C Chain C, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|D Chain D, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|E Chain E, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|F Chain F, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|G Chain G, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|H Chain H, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
Length = 259
Score = 288 bits (736), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 137/237 (57%), Positives = 183/237 (77%)
Query: 16 SNAESETDEDDEFAPALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEA 75
S + + +ED E E+++HI + + +++R RS+EFY+L+N RR+VRF S E
Sbjct: 15 STEDLQVEEDAEEWQEAEESVEHIPFSHTRYPEQEMRMRSQEFYELLNKRRSVRFISSEH 74
Query: 76 VPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135
VP E+I N+IK AGT+PSGAHTEPWTFV+V+D DMK KIR+I+E EE INY KRMGK W
Sbjct: 75 VPMEVIENVIKAAGTAPSGAHTEPWTFVVVKDPDMKHKIREIIEEEEEINYMKRMGKRWV 134
Query: 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQY 195
TDL+ L+T+W KEYL TAP L+++FKQ +GF GK+K HYY+E+SVS+ACG++LAA+Q
Sbjct: 135 TDLKKLRTNWIKEYLDTAPVLILIFKQVHGFAANGKKKVHYYNEISVSIACGLLLAALQN 194
Query: 196 CGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIV 252
GLVT+T+TPLN GP LR LL RP +EKL +LLP+GYP+ D TVP+LKRK ++ I+V
Sbjct: 195 AGLVTVTTTPLNCGPRLRVLLGRPSHEKLLVLLPVGYPSRDATVPDLKRKALDQIMV 251
>pdb|3TNZ|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn And Mono-Iodotyrosine
(Mit)
pdb|3TNZ|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn And Mono-Iodotyrosine
(Mit)
pdb|3TO0|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn
pdb|3TO0|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn
Length = 259
Score = 263 bits (671), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 137/237 (57%), Positives = 183/237 (77%)
Query: 16 SNAESETDEDDEFAPALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEA 75
S + + +ED E E+++HI + + +++R RS+EFY+L+N RR+VRF S E
Sbjct: 15 STEDLQVEEDAEEWQEAEESVEHIPFSHTRYPEQEMRMRSQEFYELLNKRRSVRFISSEH 74
Query: 76 VPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135
VP E+I N+IK AGT+PSGAHTEPWTFV+V+D DMK KIR+I+E EE INY KRMGK W
Sbjct: 75 VPMEVIENVIKAAGTAPSGAHTEPWTFVVVKDPDMKHKIREIIEEEEEINYMKRMGKRWV 134
Query: 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQY 195
TDL+ L+T+W KEYL TAP L+++FKQ +GF GK+K HYY+E+SVS+A G++LAA+Q
Sbjct: 135 TDLKKLRTNWIKEYLDTAPVLILIFKQVHGFAANGKKKVHYYNEISVSIAAGLLLAALQN 194
Query: 196 CGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIV 252
GLVT+T+TPLNAGP LR LL RP +EKL +LLP+GYP+ D TVP+LKRK ++ I+V
Sbjct: 195 AGLVTVTTTPLNAGPRLRVLLGRPSHEKLLVLLPVGYPSRDATVPDLKRKALDQIMV 251
>pdb|4DN2|A Chain A, Crystal Structure Of Putative Nitroreductase From
Geobacter Metallireducens Gs-15
pdb|4DN2|B Chain B, Crystal Structure Of Putative Nitroreductase From
Geobacter Metallireducens Gs-15
Length = 208
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 17/208 (8%)
Query: 44 VKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFV 103
V E++ +S E + + RR+VR FSD V E + ++ A +PS A+ + W FV
Sbjct: 11 VDLGTENLYFQSXETLEAIRTRRSVRKFSDRPVEPEKLRAVLDAARLAPSWANXQCWRFV 70
Query: 104 IVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQT 163
+VED+ K +I ++ E + K++ ++ L AP +++ +
Sbjct: 71 VVEDQATKVQISELSYVEAYFG------------PKGYKSNPAQKALAEAPVVIIACGEP 118
Query: 164 YGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEK 223
+ G+ + Y+ V +A + A GL ++ + L LL P +
Sbjct: 119 ---PQSGELRGQQYYLTDVGIAAQNLXLAAHDLGLGSVFVGVFDE-QQLGELLGIPAELR 174
Query: 224 LALLLPIGYPALDCTVPNLKRKDIEDII 251
+ L P+GYP L+ RK +++I+
Sbjct: 175 IVGLFPLGYP-LEGPKAGPSRKPLDEIV 201
>pdb|4G8S|A Chain A, Crystal Structure Of A Putative Nitroreductase From
Geobacter Sulfurreducens Pca (Target Psi-013445)
pdb|4G8S|B Chain B, Crystal Structure Of A Putative Nitroreductase From
Geobacter Sulfurreducens Pca (Target Psi-013445)
Length = 210
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 16/190 (8%)
Query: 44 VKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFV 103
V E++ +S + + + RR+VR FSD V E + +++ A +PS A+ + FV
Sbjct: 11 VDLGTENLYFQSXDTLEAIRTRRSVRAFSDRPVEPEKLQXVLEAARQAPSWANXQCSRFV 70
Query: 104 IVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQT 163
+V+D ++KAKI ++ E + +G +T+ ++ L AP ++V
Sbjct: 71 VVQDAEVKAKISELSFVEA---FFAPLG---------YRTNPAQKALAEAPVVIVACGVP 118
Query: 164 YGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEK 223
E G + Y+ V +A + A GL ++ L LLD P +
Sbjct: 119 ---GESGDLRGQQYYXTDVGIATENLXLAAHAVGLGSVFVGVFGE-EQLGDLLDIPPEIR 174
Query: 224 LALLLPIGYP 233
+ L P+GYP
Sbjct: 175 IVGLFPLGYP 184
>pdb|3EO8|A Chain A, Crystal Structure Of Blub-Like Flavoprotein
(Yp_001089088.1) From Clostridium Difficile 630 At 1.74
A Resolution
pdb|3EO8|B Chain B, Crystal Structure Of Blub-Like Flavoprotein
(Yp_001089088.1) From Clostridium Difficile 630 At 1.74
A Resolution
pdb|3EO8|C Chain C, Crystal Structure Of Blub-Like Flavoprotein
(Yp_001089088.1) From Clostridium Difficile 630 At 1.74
A Resolution
pdb|3EO8|D Chain D, Crystal Structure Of Blub-Like Flavoprotein
(Yp_001089088.1) From Clostridium Difficile 630 At 1.74
A Resolution
pdb|3EO8|E Chain E, Crystal Structure Of Blub-Like Flavoprotein
(Yp_001089088.1) From Clostridium Difficile 630 At 1.74
A Resolution
pdb|3EO8|F Chain F, Crystal Structure Of Blub-Like Flavoprotein
(Yp_001089088.1) From Clostridium Difficile 630 At 1.74
A Resolution
Length = 219
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 65 RRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEER- 123
R++VR F ++ V E I IK AG +PSG + + W FV+++ +D+ KI D++ +++
Sbjct: 11 RQSVRKFKNQDVSDEDILKXIKAAGAAPSGKNIQNWHFVVIKRRDLXEKIADVITKKQQE 70
Query: 124 --INYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTY 164
+ DK + + R ++ YL AP LV+VF + Y
Sbjct: 71 ILVEXDK-VSVDKANRFRKFVKNFTLFYL-KAPVLVLVFTKVY 111
>pdb|3QDL|A Chain A, Crystal Structure Of Rdxa From Helicobacter Pyroli
pdb|3QDL|B Chain B, Crystal Structure Of Rdxa From Helicobacter Pyroli
pdb|3QDL|C Chain C, Crystal Structure Of Rdxa From Helicobacter Pyroli
pdb|3QDL|D Chain D, Crystal Structure Of Rdxa From Helicobacter Pyroli
Length = 210
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 21/186 (11%)
Query: 60 QLMNARRTVRFF-SDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKI-RDI 117
QL+N R + + F S + I + A SPS +T+PW FV+V DKD+K +I
Sbjct: 11 QLLNERHSCKMFDSHYEFSSTELEEIAEIARLSPSSYNTQPWHFVMVTDKDLKKQIAAHS 70
Query: 118 VESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTA---PYLVVV---FKQTYG--FKEE 169
+EE I + LRP + Y+ Y V V F Q G F
Sbjct: 71 YFNEEMIKSASALMV--VCSLRPSELLPHGHYMQNLYPESYKVRVIPSFAQMLGVRFNHS 128
Query: 170 GKRKKHYYHE---MSVSLAC-GIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLA 225
+R + Y E ++V C G+ L + C + PL G L +++P K+A
Sbjct: 129 MQRLESYILEQCYIAVGQICMGVSLMGLDSC--IIGGFDPLKVGEVLEERINKP---KIA 183
Query: 226 LLLPIG 231
L+ +G
Sbjct: 184 CLIALG 189
>pdb|3GAG|A Chain A, Crystal Structure Of A Nitroreductase-Like Protein
(Smu.346) From Streptococcus Mutans At 1.70 A Resolution
pdb|3GAG|B Chain B, Crystal Structure Of A Nitroreductase-Like Protein
(Smu.346) From Streptococcus Mutans At 1.70 A Resolution
pdb|3GAG|C Chain C, Crystal Structure Of A Nitroreductase-Like Protein
(Smu.346) From Streptococcus Mutans At 1.70 A Resolution
pdb|3GAG|D Chain D, Crystal Structure Of A Nitroreductase-Like Protein
(Smu.346) From Streptococcus Mutans At 1.70 A Resolution
Length = 206
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 90/201 (44%), Gaps = 22/201 (10%)
Query: 57 EFYQLMNARRTVRFFSDEAV-PKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIR 115
++ ++ R +VR F +AV P ++I + ++ A +PSG + +PW V+V++K+ + ++
Sbjct: 5 DYLNFLDGRVSVRRFDPDAVLPNDLIKDXLEHASYAPSGNNFQPWRVVVVKNKNKQEDLK 64
Query: 116 DIVESEERINYDKRM----GKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGK 171
+ + ++ + G E DL T WQ+ ++ ++ K + E
Sbjct: 65 KLAALQPQVATASAVFLLFGDENAYDL----TWWQEFHVQKG----IITKDEAAARAERI 116
Query: 172 RKKHYYH-----EMSVSLACGIMLAAI-QYCGLVTLTSTPLNA--GPALRTLLDRPGNEK 223
R+ H + L G+ + Q + S P A++T LD P +
Sbjct: 117 RQYFDLHPEDKETQGLRLDVGLFAXNLXQVVRVYGYDSVPXRGVDFDAIKTYLDXPNGWE 176
Query: 224 LALLLPIGYPALDCTVPNLKR 244
L LP+G AL P++++
Sbjct: 177 PILXLPVG-KALQAGNPHVRK 196
>pdb|2WZV|A Chain A, Crystal Structure Of The Fmn-Dependent Nitroreductase Nfnb
From Mycobacterium Smegmatis
pdb|2WZV|B Chain B, Crystal Structure Of The Fmn-Dependent Nitroreductase Nfnb
From Mycobacterium Smegmatis
pdb|2WZW|A Chain A, Crystal Structure Of The Fmn-Dependent Nitroreductase Nfnb
From Mycobacterium Smegmatis In Complex With Nadph
pdb|2WZW|B Chain B, Crystal Structure Of The Fmn-Dependent Nitroreductase Nfnb
From Mycobacterium Smegmatis In Complex With Nadph
Length = 235
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 50 DIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVED-- 107
D+ Q +E +L+ RR VR F + VP+E + + AG +PS ++T+PW +V
Sbjct: 14 DLAQAAE---RLIKGRRAVRAFRPDEVPEETXRAVFELAGHAPSNSNTQPWHVEVVSGAA 70
Query: 108 KDMKAKIRDIVESEERINYD 127
+D A+ +EER+ D
Sbjct: 71 RDRLAEALVTAHAEERVTVD 90
>pdb|3GR3|A Chain A, Crystal Structure Of A Nitroreductase-Like Family Protein
(Pnba, Bh06130) From Bartonella Henselae Str. Houston-1
At 1.45 A Resolution
pdb|3GR3|B Chain B, Crystal Structure Of A Nitroreductase-Like Family Protein
(Pnba, Bh06130) From Bartonella Henselae Str. Houston-1
At 1.45 A Resolution
Length = 230
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 36/55 (65%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMK 111
+ +Q + +R+++R F+D+ V +E I I+K A +PSG + +PW +++ K ++
Sbjct: 8 DIFQSILSRKSIRAFTDQPVTQETIREILKLAARAPSGTNLQPWQVIVLTGKILQ 62
>pdb|3G14|A Chain A, Crystal Structure Of Nitroreductase Family Protein
(Yp_877874.1) From Clostridium Novyi Nt At 1.75 A
Resolution
pdb|3G14|B Chain B, Crystal Structure Of Nitroreductase Family Protein
(Yp_877874.1) From Clostridium Novyi Nt At 1.75 A
Resolution
Length = 193
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 72/177 (40%), Gaps = 25/177 (14%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
EFY+++ R++++ F A+ ++ + II A +PS + P+ F++VE +K I +
Sbjct: 3 EFYEVIKKRKSIKKFEQTAIDRDKLLKIIDXAXRAPSWKNKTPYKFIVVESDKLKLDIAN 62
Query: 117 IVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHY 176
+E+ KTS E + +P +V +E G
Sbjct: 63 AIEN---------------------KTSAASEAVLNSPXTIVAVANP---EESGDVSGKE 98
Query: 177 YHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYP 233
+ + ++A ++ G T N ++ L P N ++ L P+G P
Sbjct: 99 IYLIDTAIAXEHIVLGATDEGYGTCWIAAFNEN-KIKEALKIPDNLRVVALTPLGVP 154
>pdb|3GBH|A Chain A, Crystal Structure Of A Putative Nad(P)h:fmn Oxidoreductase
(Se1966) From Staphylococcus Epidermidis Atcc 12228 At
2.00 A Resolution
pdb|3GBH|B Chain B, Crystal Structure Of A Putative Nad(P)h:fmn Oxidoreductase
(Se1966) From Staphylococcus Epidermidis Atcc 12228 At
2.00 A Resolution
pdb|3GBH|C Chain C, Crystal Structure Of A Putative Nad(P)h:fmn Oxidoreductase
(Se1966) From Staphylococcus Epidermidis Atcc 12228 At
2.00 A Resolution
pdb|3GBH|D Chain D, Crystal Structure Of A Putative Nad(P)h:fmn Oxidoreductase
(Se1966) From Staphylococcus Epidermidis Atcc 12228 At
2.00 A Resolution
Length = 213
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 54 RSEEFYQLMNARRTVRFFSDE-AVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKA 112
R +F +++N+R++V+ F + +P+E II A +PS + +PW +V+ + K
Sbjct: 7 RINDFNEVLNSRKSVKVFDENYKIPREEXDEIITKATKAPSSVNXQPWRIAVVQSDEXKE 66
Query: 113 KIRD 116
K+++
Sbjct: 67 KVKE 70
>pdb|4EO3|A Chain A, Peroxiredoxin Nitroreductase Fusion Enzyme
pdb|4EO3|B Chain B, Peroxiredoxin Nitroreductase Fusion Enzyme
Length = 322
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 36/193 (18%)
Query: 44 VKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFV 103
VK++++ + + + + RR R + VP+E + +IK A +PS + +PW FV
Sbjct: 130 VKEALDRLIEEDLSLNKHIEWRRARRALKKDRVPREELELLIKAAHLAPSCMNNQPWRFV 189
Query: 104 IVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVF-KQ 162
+V+++++ KI + + P W K AP L+ V K+
Sbjct: 190 VVDEEELLKKIHEAL---------------------PGGNYWMK----NAPALIAVHSKK 224
Query: 163 TYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAG---PALRTLLDRP 219
+ R Y LA G +L GLV + P+ AG ++ +L P
Sbjct: 225 DFDCALPDNRD---YFLFDTGLAVGNLLVQATQMGLV---AHPV-AGYDPVKVKEILKIP 277
Query: 220 GNEKLALLLPIGY 232
+ L L+ +GY
Sbjct: 278 EDHVLITLIAVGY 290
>pdb|3GFA|A Chain A, Crystal Structure Of A Putative Nitroreductase In Complex
With Fmn (Cd3205) From Clostridium Difficile 630 At 1.35
A Resolution
pdb|3GFA|B Chain B, Crystal Structure Of A Putative Nitroreductase In Complex
With Fmn (Cd3205) From Clostridium Difficile 630 At 1.35
A Resolution
Length = 198
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 35/54 (64%)
Query: 62 MNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIR 115
++ RR++R + ++++ E I II+ +PS + +PW FV++ +K+ ++ ++
Sbjct: 7 ISKRRSIRKYKNQSISHETIEKIIEAGINAPSSKNRQPWRFVVITEKEKESXLK 60
>pdb|3E10|A Chain A, Crystal Structure Of Putative Nadh Oxidase (Np_348178.1)
From Clostridium Acetobutylicum At 1.40 A Resolution
pdb|3E10|B Chain B, Crystal Structure Of Putative Nadh Oxidase (Np_348178.1)
From Clostridium Acetobutylicum At 1.40 A Resolution
Length = 168
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 33/175 (18%)
Query: 61 LMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVES 120
++N RR++R + + V KE I +++ A +PS + +PW F+++ED++ K+
Sbjct: 4 IINNRRSIRNYKGKKVEKEKIEKLLRAAXQAPSAGNQQPWEFIVLEDRENIDKLS----- 58
Query: 121 EERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEM 180
N+ K L TAP +V+ EE + + +
Sbjct: 59 ----NFSKYANS-----------------LKTAPLAIVLLAD-----EEKXKISEXWEQD 92
Query: 181 SVSLACGIML-AAIQYCGLVTLTSTPLNAG-PALRTLLDRPGNEKLALLLPIGYP 233
+ A I+L AA G V L + P+ L+ + N K ++ +GYP
Sbjct: 93 XAAAAENILLEAAYLDLGAVWLGAQPIEERVKNLKEXFNLKSNIKPFCVISVGYP 147
>pdb|3E39|A Chain A, Crystal Structure Of A Putative Nitroreductase In Complex
With Fmn (Dde_0787) From Desulfovibrio Desulfuricans
Subsp. At 1.70 A Resolution
pdb|3E39|B Chain B, Crystal Structure Of A Putative Nitroreductase In Complex
With Fmn (Dde_0787) From Desulfovibrio Desulfuricans
Subsp. At 1.70 A Resolution
Length = 178
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 60 QLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVE 119
Q + RR++R ++DEAV E + I++ +PSG + +P F+++ D + DI+
Sbjct: 10 QAIRQRRSIRRYTDEAVSDEAVRLILEAGIWAPSGLNNQPCRFLVIRADDPRC---DILA 66
Query: 120 SEERINYDKRMGK 132
+ R + R K
Sbjct: 67 AHTRYGHIVRGAK 79
>pdb|3EK3|A Chain A, Crystal Structure Of Nitroreductase With Bound Fmn
(yp_211706.1) From Bacteroides Fragilis Nctc 9343 At
1.70 A Resolution
Length = 190
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 54 RSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIV 105
++ E + + ARR+VR + + +P + ++ I++ +PSG H E W F V
Sbjct: 3 KTNEVLETIKARRSVRAYDRKQIPADDLNAILEAGAYAPSGXHYETWHFTAV 54
>pdb|1NOX|A Chain A, Nadh Oxidase From Thermus Thermophilus
Length = 205
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 65 RRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
RR++R + + VP+ ++ I++ A +PS + +PW V+V D K +R+
Sbjct: 17 RRSIRRYRKDPVPEGLLREILEAALRAPSAWNLQPWRIVVVRDPATKRALRE 68
>pdb|3KWK|A Chain A, Crystal Structure Of Putative Nadh DehydrogenaseNAD(P)H
Nitroreductase (Np_809094.1) From Bacteroides
Thetaiotaomicron Vpi- 5482 At 1.54 A Resolution
Length = 175
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 65 RRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDK 108
R++VR + ++ V KE I ++ ++PSG PW FV+V D+
Sbjct: 19 RKSVRTYLNKGVEKEKIDLXLRAGXSAPSGKDVRPWEFVVVSDR 62
>pdb|3M5K|A Chain A, Crystal Structure Of Putative Nadh DehydrogenaseNAD(P)H
Nitroreductase (Bdi_1728) From Parabacteroides
Distasonis A At 1.86 A Resolution
pdb|3M5K|B Chain B, Crystal Structure Of Putative Nadh DehydrogenaseNAD(P)H
Nitroreductase (Bdi_1728) From Parabacteroides
Distasonis A At 1.86 A Resolution
Length = 172
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 65 RRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDK 108
R++VR + D V KE I +I+ +PS PW F+IV D+
Sbjct: 15 RKSVRKYKDRPVEKEKIDKLIRAGXAAPSSRDRRPWEFIIVTDR 58
>pdb|1ZCH|A Chain A, Structure Of The Hypothetical Oxidoreductase Ycnd From
Bacillus Subtilis
Length = 255
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRD 116
E + + R++R ++DE V +E + II+ ++PS + + T + V+DK+ K KI +
Sbjct: 3 EVIKSLTDHRSIRSYTDEPVAQEQLDQIIEAVQSAPSSINGQQVTVITVQDKERKKKISE 62
Query: 117 I 117
+
Sbjct: 63 L 63
>pdb|2B67|A Chain A, Crystal Structure Of The Nitroreductase Family Protein
From Streptococcus Pneumoniae Tigr4
pdb|2B67|B Chain B, Crystal Structure Of The Nitroreductase Family Protein
From Streptococcus Pneumoniae Tigr4
pdb|2B67|C Chain C, Crystal Structure Of The Nitroreductase Family Protein
From Streptococcus Pneumoniae Tigr4
pdb|2B67|D Chain D, Crystal Structure Of The Nitroreductase Family Protein
From Streptococcus Pneumoniae Tigr4
Length = 204
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 55 SEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKD 109
+ +F +L R + F+D+ V + + I+ A +PS +++PW FV+V +K+
Sbjct: 3 AXKFLELNKKRHATKHFTDKLVDPKDVRTAIEIATLAPSAHNSQPWKFVVVREKN 57
>pdb|3GE6|A Chain A, Crystal Structure Of A Putative Nitroreductase In Complex
With Fmn (Exig_2970) From Exiguobacterium Sibiricum
255-15 At 1.85 A Resolution
pdb|3GE6|B Chain B, Crystal Structure Of A Putative Nitroreductase In Complex
With Fmn (Exig_2970) From Exiguobacterium Sibiricum
255-15 At 1.85 A Resolution
Length = 212
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 53 QRSEEFYQLMNARRTVRFF-SDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMK 111
Q + +F +++ RR++R + ++ + KE I++ A +PS + +PW F++++ ++ K
Sbjct: 5 QTATDFXEIVKGRRSIRNYDTNVKISKEEXTQILEEATLAPSSVNXQPWRFLVIDSEEGK 64
Query: 112 AKI 114
A +
Sbjct: 65 ATL 67
>pdb|2HAY|A Chain A, The Crystal Structure Of The Putative Nad(P)h-Flavin
Oxidoreductase From Streptococcus Pyogenes M1 Gas
pdb|2HAY|B Chain B, The Crystal Structure Of The Putative Nad(P)h-Flavin
Oxidoreductase From Streptococcus Pyogenes M1 Gas
pdb|2HAY|C Chain C, The Crystal Structure Of The Putative Nad(P)h-Flavin
Oxidoreductase From Streptococcus Pyogenes M1 Gas
pdb|2HAY|D Chain D, The Crystal Structure Of The Putative Nad(P)h-Flavin
Oxidoreductase From Streptococcus Pyogenes M1 Gas
Length = 224
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIR 115
+ Q ++ R VR + +E + E + I+ A SPS E W FV++++K +K +I+
Sbjct: 11 QIQQALHFRTAVRVYKEEKISDEDLALILDAAWLSPSSIGLEGWRFVVLDNKPIKEEIK 69
>pdb|2I7H|A Chain A, Crystal Structure Of The Nitroreductase-like Family
Protein From Bacillus Cereus
pdb|2I7H|B Chain B, Crystal Structure Of The Nitroreductase-like Family
Protein From Bacillus Cereus
pdb|2I7H|C Chain C, Crystal Structure Of The Nitroreductase-like Family
Protein From Bacillus Cereus
pdb|2I7H|D Chain D, Crystal Structure Of The Nitroreductase-like Family
Protein From Bacillus Cereus
pdb|2I7H|E Chain E, Crystal Structure Of The Nitroreductase-like Family
Protein From Bacillus Cereus
pdb|2I7H|F Chain F, Crystal Structure Of The Nitroreductase-like Family
Protein From Bacillus Cereus
Length = 189
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 60 QLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWT 101
++ RR+VR F+D+AV K+++ ++ A +P+ H EPW
Sbjct: 12 NVIKERRSVRTFTDKAVEKDLLIELLNDATWAPNHKHREPWN 53
>pdb|3GE5|A Chain A, Crystal Structure Of A Putative Nad(P)h:fmn Oxidoreductase
(Pg0310) From Porphyromonas Gingivalis W83 At 1.70 A
Resolution
pdb|3GE5|B Chain B, Crystal Structure Of A Putative Nad(P)h:fmn Oxidoreductase
(Pg0310) From Porphyromonas Gingivalis W83 At 1.70 A
Resolution
Length = 198
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 56 EEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKI 114
E+F++ RR+VR F D V +E + I++ +PS + +PW F++V +++ + ++
Sbjct: 31 EDFFR---TRRSVRKFIDRPVEEEKLXAILEAGRIAPSAHNYQPWHFLVVREEEGRKRL 86
>pdb|2ISJ|A Chain A, Blub Bound To Oxidized Fmn
pdb|2ISJ|B Chain B, Blub Bound To Oxidized Fmn
pdb|2ISJ|C Chain C, Blub Bound To Oxidized Fmn
pdb|2ISJ|D Chain D, Blub Bound To Oxidized Fmn
pdb|2ISJ|E Chain E, Blub Bound To Oxidized Fmn
pdb|2ISJ|F Chain F, Blub Bound To Oxidized Fmn
pdb|2ISJ|G Chain G, Blub Bound To Oxidized Fmn
pdb|2ISJ|H Chain H, Blub Bound To Oxidized Fmn
pdb|2ISK|A Chain A, Blub Bound To Flavin Anion (Charge Transfer Complex)
pdb|2ISK|B Chain B, Blub Bound To Flavin Anion (Charge Transfer Complex)
pdb|2ISK|C Chain C, Blub Bound To Flavin Anion (Charge Transfer Complex)
pdb|2ISK|D Chain D, Blub Bound To Flavin Anion (Charge Transfer Complex)
pdb|2ISK|E Chain E, Blub Bound To Flavin Anion (Charge Transfer Complex)
pdb|2ISK|F Chain F, Blub Bound To Flavin Anion (Charge Transfer Complex)
pdb|2ISK|G Chain G, Blub Bound To Flavin Anion (Charge Transfer Complex)
pdb|2ISK|H Chain H, Blub Bound To Flavin Anion (Charge Transfer Complex)
pdb|2ISL|A Chain A, Blub Bound To Reduced Flavin (Fmnh2) And Molecular Oxygen.
(Clear Crystal Form)
pdb|2ISL|B Chain B, Blub Bound To Reduced Flavin (Fmnh2) And Molecular Oxygen.
(Clear Crystal Form)
pdb|2ISL|C Chain C, Blub Bound To Reduced Flavin (Fmnh2) And Molecular Oxygen.
(Clear Crystal Form)
pdb|2ISL|D Chain D, Blub Bound To Reduced Flavin (Fmnh2) And Molecular Oxygen.
(Clear Crystal Form)
pdb|2ISL|E Chain E, Blub Bound To Reduced Flavin (Fmnh2) And Molecular Oxygen.
(Clear Crystal Form)
pdb|2ISL|F Chain F, Blub Bound To Reduced Flavin (Fmnh2) And Molecular Oxygen.
(Clear Crystal Form)
pdb|2ISL|G Chain G, Blub Bound To Reduced Flavin (Fmnh2) And Molecular Oxygen.
(Clear Crystal Form)
pdb|2ISL|H Chain H, Blub Bound To Reduced Flavin (Fmnh2) And Molecular Oxygen.
(Clear Crystal Form)
Length = 230
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 59 YQLMNARRTVR-FFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKI 114
Y+ + RR VR F E + +E+I ++ A +PS +PW FV+V + + K+
Sbjct: 27 YRAIETRRDVRDEFLPEPLSEELIARLLGAAHQAPSVGFMQPWNFVLVRQDETREKV 83
>pdb|3BEM|A Chain A, Crystal Structure Of Putative Nitroreductase Ydfn
(2632848) From Bacillus Subtilis At 1.65 A Resolution
pdb|3BEM|B Chain B, Crystal Structure Of Putative Nitroreductase Ydfn
(2632848) From Bacillus Subtilis At 1.65 A Resolution
Length = 218
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 57 EFYQLMNARRTV-RFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIR 115
EF L+N RR+ F S + KE ++ + +PS + + +V V D+D+K K++
Sbjct: 15 EFTHLVNERRSASNFLSGHPITKEDLNEXFELVALAPSAFNLQHTKYVTVLDQDVKEKLK 74
Query: 116 DIVESEERI 124
+ ++
Sbjct: 75 QAANGQYKV 83
>pdb|3BM1|A Chain A, Crystal Structure Of A Minimal Nitroreductase Ydja From
Escherichia Coli K12 With And Without Fmn Cofactor
pdb|3BM1|B Chain B, Crystal Structure Of A Minimal Nitroreductase Ydja From
Escherichia Coli K12 With And Without Fmn Cofactor
Length = 183
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 19/181 (10%)
Query: 60 QLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVE 119
+L+ RR+ ++ A E + NI++ +P +PW F ++E E
Sbjct: 5 ELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEG-----------E 53
Query: 120 SEERINYDKRMGK-EWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYH 178
ER + G +D + + + + AP ++ V + EE + +
Sbjct: 54 GRERFSAVLEQGAIAAGSDDKAIDKARNAPF--RAPLIITVVAKC----EENHKVPRWEQ 107
Query: 179 EMSVSLACGIM-LAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDC 237
EMS A M +AA+ S L P +R +K+ L +G P L
Sbjct: 108 EMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLKA 167
Query: 238 T 238
+
Sbjct: 168 S 168
>pdb|2FRE|A Chain A, The Crystal Structure Of The Oxidoreductase Containing Fmn
pdb|2FRE|B Chain B, The Crystal Structure Of The Oxidoreductase Containing Fmn
Length = 200
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 23/133 (17%)
Query: 65 RRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERI 124
R + R F PKE + I+ A +PS ++ +PW FV
Sbjct: 20 RWSPRAFDGSPXPKEHLLTILDAAHWAPSASNHQPWRFV--------------------- 58
Query: 125 NYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSL 184
Y + ++W + L QK + A L+ V + + EG++K H
Sbjct: 59 -YAHKDSEDWPLFVELLXEGNQK-WAKNASVLLFVISRDHTISHEGEKKPSATHSFDAGA 116
Query: 185 ACGIMLAAIQYCG 197
A + G
Sbjct: 117 AWFSLAXQAHLLG 129
>pdb|3BM2|A Chain A, Crystal Structure Of A Minimal Nitroreductase Ydja From
Escherichia Coli K12 With And Without Fmn Cofactor
pdb|3BM2|B Chain B, Crystal Structure Of A Minimal Nitroreductase Ydja From
Escherichia Coli K12 With And Without Fmn Cofactor
Length = 185
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 19/181 (10%)
Query: 60 QLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVE 119
+L+ RR+ ++ A E + NI++ +P +PW F ++E E
Sbjct: 5 ELLINRRSASRLAEPAPTGEQLQNILRAGXRAPDHKSXQPWHFFVIEG-----------E 53
Query: 120 SEERINYDKRMGK-EWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYH 178
ER + G +D + + + + AP ++ V + EE + +
Sbjct: 54 GRERFSAVLEQGAIAAGSDDKAIDKARNAPF--RAPLIITVVAKC----EENHKVPRWEQ 107
Query: 179 EMSVSLACGIMLAAIQYCGLVTL-TSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDC 237
E S A A G + S L P +R +K+ L +G P L
Sbjct: 108 EXSAGCAVXAXQXAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLKA 167
Query: 238 T 238
+
Sbjct: 168 S 168
>pdb|3PXV|A Chain A, Crystal Structure Of A Nitroreductase With Bound Fmn
(Dhaf_2018) From Desulfitobacterium Hafniense Dcb-2 At
2.30 A Resolution
pdb|3PXV|B Chain B, Crystal Structure Of A Nitroreductase With Bound Fmn
(Dhaf_2018) From Desulfitobacterium Hafniense Dcb-2 At
2.30 A Resolution
pdb|3PXV|C Chain C, Crystal Structure Of A Nitroreductase With Bound Fmn
(Dhaf_2018) From Desulfitobacterium Hafniense Dcb-2 At
2.30 A Resolution
pdb|3PXV|D Chain D, Crystal Structure Of A Nitroreductase With Bound Fmn
(Dhaf_2018) From Desulfitobacterium Hafniense Dcb-2 At
2.30 A Resolution
Length = 189
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDM 110
E +++ R + R F +E E++ I + A +PSG + + W ++V++K++
Sbjct: 5 ETLKVIAERYSCRDFKNEXPSDELLQAIAEAAIQAPSGXNRQAWRVIVVKNKEL 58
>pdb|1V5Y|A Chain A, Binding Of Coumarins To Nad(P)h:fmn Oxidoreductase
pdb|1V5Y|B Chain B, Binding Of Coumarins To Nad(P)h:fmn Oxidoreductase
pdb|1V5Z|A Chain A, Binding Of Coumarins To Nad(P)h:fmn Oxidoreductase
pdb|1V5Z|B Chain B, Binding Of Coumarins To Nad(P)h:fmn Oxidoreductase
Length = 217
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/67 (19%), Positives = 33/67 (49%)
Query: 59 YQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIV 118
+ L N + ++ + V +E + +++ S S +++PW F+++E K ++ D
Sbjct: 6 HDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHDSF 65
Query: 119 ESEERIN 125
+ + N
Sbjct: 66 ANMHQFN 72
>pdb|1VFR|A Chain A, The Major Nad(P)h:fmn Oxidoreductase From Vibrio Fischeri
pdb|1VFR|B Chain B, The Major Nad(P)h:fmn Oxidoreductase From Vibrio Fischeri
Length = 218
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/67 (19%), Positives = 33/67 (49%)
Query: 59 YQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIV 118
+ L N + ++ + V +E + +++ S S +++PW F+++E K ++ D
Sbjct: 7 HDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHDSF 66
Query: 119 ESEERIN 125
+ + N
Sbjct: 67 ANMHQFN 73
>pdb|2J2M|A Chain A, Crystal Structure Analysis Of Catalase From
Exiguobacterium Oxidotolerans
pdb|2J2M|B Chain B, Crystal Structure Analysis Of Catalase From
Exiguobacterium Oxidotolerans
pdb|2J2M|C Chain C, Crystal Structure Analysis Of Catalase From
Exiguobacterium Oxidotolerans
pdb|2J2M|D Chain D, Crystal Structure Analysis Of Catalase From
Exiguobacterium Oxidotolerans
Length = 491
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 27 EFAPALPEALDHISYDF----VKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIH 82
+F PE+ + + + F + S +R S ++ +NA + VPKE +H
Sbjct: 165 DFMTLRPESTNMLMHIFTDEGIPASYRKMRGSSVHSFKWVNAHGNTVYIKLRWVPKEGVH 224
Query: 83 NIIKTAGTSPSGA---HTEPWTFVIVEDKDM 110
N+ T G H TF +E+ D
Sbjct: 225 NLSADEATEVQGKDFNHASNDTFQAIENGDF 255
>pdb|3HZN|A Chain A, Structure Of The Salmonella Typhimurium Nfnb
Dihydropteridine Reductase
pdb|3HZN|B Chain B, Structure Of The Salmonella Typhimurium Nfnb
Dihydropteridine Reductase
pdb|3HZN|C Chain C, Structure Of The Salmonella Typhimurium Nfnb
Dihydropteridine Reductase
pdb|3HZN|D Chain D, Structure Of The Salmonella Typhimurium Nfnb
Dihydropteridine Reductase
pdb|3HZN|E Chain E, Structure Of The Salmonella Typhimurium Nfnb
Dihydropteridine Reductase
pdb|3HZN|F Chain F, Structure Of The Salmonella Typhimurium Nfnb
Dihydropteridine Reductase
pdb|3HZN|G Chain G, Structure Of The Salmonella Typhimurium Nfnb
Dihydropteridine Reductase
pdb|3HZN|H Chain H, Structure Of The Salmonella Typhimurium Nfnb
Dihydropteridine Reductase
Length = 220
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 91 SPSGAHTEPWTFVIVEDKDMKAKI 114
SPS +++PW F++ ++ KA++
Sbjct: 40 SPSSTNSQPWHFIVASTEEGKARV 63
>pdb|1ICV|A Chain A, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
pdb|1ICV|B Chain B, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
pdb|1ICV|C Chain C, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
pdb|1ICV|D Chain D, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
Length = 217
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 91 SPSGAHTEPWTFVIVEDKDMKAKI 114
SPS +++PW F++ ++ KA++
Sbjct: 37 SPSSTNSQPWHFIVASTEEGKARV 60
>pdb|1NEC|A Chain A, Nitroreductase From Enterobacter Cloacae
pdb|1NEC|B Chain B, Nitroreductase From Enterobacter Cloacae
pdb|1NEC|C Chain C, Nitroreductase From Enterobacter Cloacae
pdb|1NEC|D Chain D, Nitroreductase From Enterobacter Cloacae
Length = 216
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 91 SPSGAHTEPWTFVIVEDKDMKAKI 114
SPS +++PW F++ ++ KA++
Sbjct: 36 SPSSTNSQPWHFIVASTEEGKARV 59
>pdb|1DS7|A Chain A, A Minor Fmn-Dependent Nitroreductase From Escherichia Coli
B
pdb|1ICR|A Chain A, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
pdb|1ICR|B Chain B, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
pdb|1ICU|A Chain A, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
pdb|1ICU|B Chain B, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
pdb|1ICU|C Chain C, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
pdb|1ICU|D Chain D, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
pdb|1OO5|A Chain A, Studies On The Nitroreductase Prodrug-Activating System.
Crystal Structures Of The Enzyme Active Form And
Complexes With The Inhibitor Dicoumarol And
Dinitrobenzamide Prodrugs
pdb|1OO5|B Chain B, Studies On The Nitroreductase Prodrug-Activating System.
Crystal Structures Of The Enzyme Active Form And
Complexes With The Inhibitor Dicoumarol And
Dinitrobenzamide Prodrugs
pdb|1OO6|A Chain A, Nitroreductase From E-coli In Complex With The
Dinitrobenzamide Prodrug Sn23862
pdb|1OO6|B Chain B, Nitroreductase From E-coli In Complex With The
Dinitrobenzamide Prodrug Sn23862
pdb|1OON|A Chain A, Nitroreductase From E-coli In Complex With The
Dinitrobenzamide Prodrug Sn27217
pdb|1OON|B Chain B, Nitroreductase From E-coli In Complex With The
Dinitrobenzamide Prodrug Sn27217
pdb|1OOQ|A Chain A, Nitroreductase From E-Coli In Complex With The Inhibitor
Dicoumarol
pdb|1OOQ|B Chain B, Nitroreductase From E-Coli In Complex With The Inhibitor
Dicoumarol
pdb|1IDT|A Chain A, Structural Studies On A Prodrug-Activating System-Cb1954
And Fmn-Dependent Nitroreductase
pdb|1IDT|B Chain B, Structural Studies On A Prodrug-Activating System-Cb1954
And Fmn-Dependent Nitroreductase
pdb|1YKI|A Chain A, The Structure Of E. Coli Nitroreductase Bound With The
Antibiotic Nitrofurazone
pdb|1YKI|B Chain B, The Structure Of E. Coli Nitroreductase Bound With The
Antibiotic Nitrofurazone
pdb|1YKI|C Chain C, The Structure Of E. Coli Nitroreductase Bound With The
Antibiotic Nitrofurazone
pdb|1YKI|D Chain D, The Structure Of E. Coli Nitroreductase Bound With The
Antibiotic Nitrofurazone
pdb|1YLR|A Chain A, The Structure Of E.Coli Nitroreductase With Bound Acetate,
Crystal Form 1
pdb|1YLR|B Chain B, The Structure Of E.Coli Nitroreductase With Bound Acetate,
Crystal Form 1
pdb|1YLU|A Chain A, The Structure Of E. Coli Nitroreductase With Bound
Acetate, Crystal Form 2
pdb|1YLU|B Chain B, The Structure Of E. Coli Nitroreductase With Bound
Acetate, Crystal Form 2
Length = 217
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 91 SPSGAHTEPWTFVIVEDKDMKAKI 114
SPS +++PW F++ ++ KA++
Sbjct: 37 SPSSTNSQPWHFIVASTEEGKARV 60
>pdb|1KQB|A Chain A, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQB|B Chain B, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQB|C Chain C, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQB|D Chain D, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQC|A Chain A, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQC|B Chain B, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQC|C Chain C, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQC|D Chain D, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQD|A Chain A, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
pdb|1KQD|B Chain B, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
pdb|1KQD|C Chain C, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
pdb|1KQD|D Chain D, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
Length = 217
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 91 SPSGAHTEPWTFVIVEDKDMKAKI 114
SPS +++PW F++ ++ KA++
Sbjct: 37 SPSSTNSQPWHFIVASTEEGKARV 60
>pdb|1DS7|B Chain B, A Minor Fmn-Dependent Nitroreductase From Escherichia Coli
B
Length = 217
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 91 SPSGAHTEPWTFVIVEDKDMKAKI 114
SPS +++PW F++ ++ KA++
Sbjct: 37 SPSSTNSQPWHFIVASTEEGKARV 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,980,869
Number of Sequences: 62578
Number of extensions: 326143
Number of successful extensions: 879
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 837
Number of HSP's gapped (non-prelim): 41
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)