Query psy144
Match_columns 254
No_of_seqs 211 out of 1216
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 18:52:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02144 iodotyrosine_dehalogen 100.0 1.3E-40 2.9E-45 275.8 17.8 193 58-250 1-193 (193)
2 PRK05365 malonic semialdehyde 100.0 3.6E-39 7.8E-44 268.4 17.1 176 54-254 5-195 (195)
3 cd02148 Nitroreductase_5 Nitro 100.0 1.1E-38 2.3E-43 263.4 17.0 169 58-251 2-185 (185)
4 cd02145 BluB Subfamily of the 100.0 3.6E-38 7.9E-43 262.4 17.9 188 59-252 1-196 (196)
5 PRK10828 putative oxidoreducta 100.0 8.9E-38 1.9E-42 257.5 18.5 182 56-254 1-183 (183)
6 cd02149 NfsB_like_nitroreducta 100.0 3.7E-37 8E-42 247.7 14.9 155 57-250 1-157 (157)
7 TIGR02476 BluB cob(II)yrinic a 100.0 1.6E-36 3.6E-41 254.2 18.9 190 55-250 6-203 (205)
8 cd02138 Nitroreductase_2 Nitro 100.0 1.3E-36 2.8E-41 250.1 16.9 170 56-252 3-181 (181)
9 PRK11053 dihydropteridine redu 100.0 7.2E-37 1.6E-41 258.5 15.7 177 56-254 1-217 (217)
10 PRK10765 nitroreductase A; Pro 100.0 9.2E-37 2E-41 261.4 14.0 170 56-253 2-178 (240)
11 cd02139 Nitroreductase_3 Nitro 100.0 3.4E-36 7.4E-41 243.6 15.7 164 58-251 1-164 (164)
12 cd02136 Nitroreductase Nitrore 100.0 1.3E-35 2.8E-40 243.1 16.9 175 58-251 1-178 (178)
13 cd02146 NfsA_FRP This family c 100.0 3.5E-36 7.6E-41 256.3 13.8 168 58-253 1-180 (229)
14 cd02137 Nitroreductase_1 Nitro 100.0 1.2E-35 2.6E-40 236.7 15.7 146 60-250 2-148 (148)
15 TIGR03553 F420_FbiB_CTERM F420 100.0 3.4E-35 7.4E-40 244.0 17.5 186 60-252 1-192 (194)
16 cd02150 NADPH_oxidoreductase_1 100.0 6E-35 1.3E-39 236.9 16.3 159 59-252 1-162 (166)
17 cd02151 NADPH_oxidoreductase_2 100.0 8E-35 1.7E-39 235.3 16.8 146 58-237 1-154 (162)
18 cd03370 NADH_oxidase NADPH_oxi 100.0 2.7E-34 5.8E-39 230.9 15.4 154 58-248 1-155 (156)
19 cd02140 Nitroreductase_4 Nitro 100.0 1.2E-33 2.5E-38 234.6 14.2 182 58-251 1-191 (192)
20 cd02135 Arsenite_oxidase Nitro 100.0 7.6E-33 1.6E-37 222.6 17.3 158 60-232 2-160 (160)
21 PRK13294 F420-0--gamma-glutamy 100.0 7.9E-33 1.7E-37 254.6 18.6 192 56-253 251-447 (448)
22 PF00881 Nitroreductase: Nitro 100.0 1.1E-31 2.3E-36 215.6 6.9 164 62-232 1-165 (165)
23 cd02143 NADH_nitroreductase Ni 100.0 1.2E-30 2.5E-35 207.8 12.6 134 61-237 1-138 (147)
24 COG0778 NfnB Nitroreductase [E 100.0 4.4E-29 9.6E-34 207.1 16.3 173 55-253 2-204 (207)
25 cd02062 Nitro_FMN_reductase Pr 100.0 1.9E-28 4.1E-33 188.2 12.7 120 62-232 1-122 (122)
26 cd02142 mcbC-like_oxidoreducta 99.8 3.7E-20 7.9E-25 151.5 10.9 166 62-232 1-180 (180)
27 TIGR03605 antibiot_sagB SagB-t 99.7 8.7E-17 1.9E-21 131.3 12.0 139 89-232 30-173 (173)
28 COG3560 FMR2 Predicted oxidore 99.5 2.1E-13 4.6E-18 108.1 13.4 172 55-237 3-184 (200)
29 PF14512 TM1586_NiRdase: Putat 99.5 4E-14 8.6E-19 117.1 5.1 122 56-251 1-122 (206)
30 KOG3936|consensus 99.5 2.1E-14 4.4E-19 99.8 1.6 74 16-89 25-99 (100)
31 PRK14851 hypothetical protein; 99.2 4.6E-11 1E-15 115.7 11.2 99 56-203 292-401 (679)
32 PRK07877 hypothetical protein; 99.2 3.1E-10 6.8E-15 110.4 15.7 180 55-253 473-720 (722)
33 PRK07877 hypothetical protein; 99.0 1.3E-09 2.7E-14 106.2 10.7 99 75-234 371-469 (722)
34 PRK14851 hypothetical protein; 98.7 4E-07 8.6E-12 88.6 14.7 180 55-252 424-677 (679)
35 PRK14852 hypothetical protein; 98.6 2.2E-07 4.9E-12 92.4 9.2 78 76-202 611-688 (989)
36 PRK14852 hypothetical protein; 98.4 9.1E-06 2E-10 81.2 16.4 178 57-252 715-986 (989)
37 PF14512 TM1586_NiRdase: Putat 98.1 1.1E-06 2.4E-11 73.0 2.4 43 64-107 114-159 (206)
38 COG4739 Uncharacterized protei 92.0 2.1 4.5E-05 33.7 9.1 130 84-232 17-169 (182)
39 cd06399 PB1_P40 The PB1 domain 73.1 5.5 0.00012 28.5 3.4 51 55-105 30-90 (92)
40 PHA01753 Holliday junction res 32.3 35 0.00076 26.1 2.0 34 75-108 63-106 (121)
41 PF04650 YSIRK_signal: YSIRK t 26.9 18 0.00038 20.0 -0.3 11 63-73 4-14 (27)
42 PF09918 DUF2148: Uncharacteri 21.4 2.8E+02 0.006 18.9 5.0 56 177-236 9-64 (69)
43 PF03007 WES_acyltransf: Wax e 21.0 1.9E+02 0.0041 24.8 4.8 34 75-108 91-124 (263)
No 1
>cd02144 iodotyrosine_dehalogenase Iodotyrosine dehalogenase catalyzes the removal of iodine from the 3, 5 positions of L-tyosine in thyroid, liver and kidney, using NADPH as electron donor. This enzyme is a homolog of the nitroreductase family. These enzymes are usually homodimers.
Probab=100.00 E-value=1.3e-40 Score=275.83 Aligned_cols=193 Identities=63% Similarity=1.108 Sum_probs=153.9
Q ss_pred HHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccccc
Q psy144 58 FYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTD 137 (254)
Q Consensus 58 ~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (254)
|+++|++|||+|+|++++||+|+|++||++|++|||++|+|||+|+||++++.+++|.+++.......+..++...|..+
T Consensus 1 ~~~~i~~RrSiR~f~~~~v~~e~l~~il~aa~~APS~~n~Qpw~~vvv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (193)
T cd02144 1 FYELMKRRRSVRKFSDEPVPREVIENCIRTAGTAPSGANTQPWTFVVVSDPELKHRIREIAEEEERINYEGRMGKEWVWD 80 (193)
T ss_pred ChhHHhhceeccCCCCCCCCHHHHHHHHHHHHhCCCcCCCCCeEEEEeCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999988876544433433333334333
Q ss_pred chhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcC
Q psy144 138 LRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLD 217 (254)
Q Consensus 138 ~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lg 217 (254)
+......+.+.++.+||++++++.+.............++...|+|++++||+|+|+++||||||+++++..+.++++||
T Consensus 81 ~~~~~~~~~~~~~~~ap~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~l~LaA~~~Glgs~~~~~~~~~~~v~~~l~ 160 (193)
T cd02144 81 LKPLGTNWRKPYLDEAPYLILVFKQKYGGLPDGKKRTHYYNEESVSIACGLLLAALQNAGLGTVTTTPLNMGPFLRRLLG 160 (193)
T ss_pred HhhhhhhhccchhhcCCEEEEEEeeccccCCccccccCCcchhhHHHHHHHHHHHHHHCCCceeecCCcchhHHHHHHhC
Confidence 32222234456788999999998876432222222234466789999999999999999999999998875589999999
Q ss_pred CCCCceEEEEEeeccCCCCCCCCCCCCCCcccc
Q psy144 218 RPGNEKLALLLPIGYPALDCTVPNLKRKDIEDI 250 (254)
Q Consensus 218 lp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei 250 (254)
+|+++.+++++++|||+++...+..+|+|++|+
T Consensus 161 ip~~~~~~~~i~lGy~~~~~~~~~~~R~~~~e~ 193 (193)
T cd02144 161 RPANEKLLMLLPVGYPDDDATVPDLKRKPLEEI 193 (193)
T ss_pred CCCCCceEEEEEeecCCCCCCCCccCCCCcccC
Confidence 999999999999999998654455679999985
No 2
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=100.00 E-value=3.6e-39 Score=268.37 Aligned_cols=176 Identities=20% Similarity=0.191 Sum_probs=145.1
Q ss_pred cHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccc
Q psy144 54 RSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKE 133 (254)
Q Consensus 54 ~~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 133 (254)
....+.++|++|||||+|++++||+|+|++||++|++|||++|+|||+|+||++++.+++|.+.+..
T Consensus 5 ~~~~~~~~i~~RrSvR~f~~~~I~~e~l~~ileaa~~APS~~N~QPw~fvvv~~~e~~~~l~~~~~~------------- 71 (195)
T PRK05365 5 DDAALDQLFTEARTHNGWLDEPVSDEQLRELYDLVKWGPTSANCSPARFVFVRSAEAKERLRPALSE------------- 71 (195)
T ss_pred CHHHHHHHHHhCcccccCCCCCCCHHHHHHHHHHHHhCCCcCCCCCeEEEEEeCHHHHHHHHHHHHh-------------
Confidence 4578899999999999999999999999999999999999999999999999999999998776521
Q ss_pred ccccchhhhhhHHhhhhcCCCeEEEEEeecCCcc--cc-------------ccccccchhhccHHHHHHHHHHHHHHcCC
Q psy144 134 WTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFK--EE-------------GKRKKHYYHEMSVSLACGIMLAAIQYCGL 198 (254)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~--~~-------------~~~~~~~~~~~~~g~a~~~l~Laa~a~Gl 198 (254)
..+..+.+||++++++.+..... .. .......++..++++++++|+|+|+++||
T Consensus 72 -----------~~~~~~~~Ap~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~ia~~~l~LaA~~~Gl 140 (195)
T PRK05365 72 -----------GNLAKTLAAPVTAIVAYDTEFHEHLPKLFPHADARSWFAGNPALAEETAFRNSSLQGAYLILAARALGL 140 (195)
T ss_pred -----------cCcchhcCCCEEEEEeeCccHhHhHHHhcchhHHHHHHcCCHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 01344679999999988643110 00 00011124567999999999999999999
Q ss_pred ccccccCCCChHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEeC
Q psy144 199 VTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254 (254)
Q Consensus 199 gs~~~~~~~~~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~~ 254 (254)
||||+++++. +.++++||+|+++.++++++||||++....+..+|+|++++++|+
T Consensus 141 gs~~~~g~~~-~~v~~~l~ip~~~~~v~~ialGy~~~~~~~~~~~R~~~~e~v~~~ 195 (195)
T PRK05365 141 DAGPMSGFDA-AAVDAEFFAGTTWKSNFLVNIGYGDPAKLFPRLPRLSFDEACRIL 195 (195)
T ss_pred ccCCccccCH-HHHHHHhCCCCCeeEEEEEEeCCCCCCCCCCCCCCCCHHHHeecC
Confidence 9999999876 999999999999999999999999875433456799999999985
No 3
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=100.00 E-value=1.1e-38 Score=263.42 Aligned_cols=169 Identities=21% Similarity=0.242 Sum_probs=138.6
Q ss_pred HHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccccc
Q psy144 58 FYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTD 137 (254)
Q Consensus 58 ~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (254)
+.++|++|||||+|++++||+|+|++||++|++|||++|+|||+|+||++++.+++|.+.+..
T Consensus 2 ~~~~~~~RrSvR~f~~~~I~~e~l~~ileaa~~APS~~N~Qpw~fvvV~~~e~~~~l~~~~~~----------------- 64 (185)
T cd02148 2 LDQLFTEARTANGFTDEPVSDEQLRAIYDLVKWGPTAANSQPARFVFVRSAEAKERLVPALSE----------------- 64 (185)
T ss_pred hHHHHhhCcccccCCCCCCCHHHHHHHHHHHHhCCCCCCCCCeEEEEEECHHHHHHHHHHHHH-----------------
Confidence 578999999999999999999999999999999999999999999999999999999876521
Q ss_pred chhhhhhHHhhhhcCCCeEEEEEeecCCccc--c-------------ccccccchhhccHHHHHHHHHHHHHHcCCcccc
Q psy144 138 LRPLKTSWQKEYLTTAPYLVVVFKQTYGFKE--E-------------GKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLT 202 (254)
Q Consensus 138 ~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~--~-------------~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~ 202 (254)
+.+..+.+||++|+++.+...... . .......++..++|++++||+|+|+++||||||
T Consensus 65 -------~~~~~~~~ap~~ivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~ia~~~l~LaA~~lGlgs~~ 137 (185)
T cd02148 65 -------GNRAKTLAAPVTAILAYDTEFHEQLPRLFPHRDARSWFFGSPALAEETAFRNSSLQGGYFILAARALGLDAGP 137 (185)
T ss_pred -------hhHHHHhcCCEEEEEEecccHHHhHHHhCcchhhhhhhhcChHHHHHHHHHhHHHHHHHHHHHHHHcCCCcCC
Confidence 123456799999998886432100 0 000111245669999999999999999999999
Q ss_pred ccCCCChHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccce
Q psy144 203 STPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDII 251 (254)
Q Consensus 203 ~~~~~~~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~ 251 (254)
+++|+. ++++++||+|+++.+++++++|||++....|..+|+|++|++
T Consensus 138 ~~g~d~-~~~~~~L~lp~~~~~v~~iavGy~~~~~~~~~~~R~~~~ev~ 185 (185)
T cd02148 138 MSGFDA-AAVDAEFFADTRWRSNFVVNIGYGDPDGLFPRLPRLAFEEAC 185 (185)
T ss_pred CcccCH-HHHHHHhCCCCCeEEEEEEEcCCCCCccCCCCCCCCChHhcC
Confidence 999876 899999999999999999999999875323445799999875
No 4
>cd02145 BluB Subfamily of the nitroreductase family that includes BluB protein in Rhodobacter capsulatus is involved in the conversion of cobinamide to cobalamin in Cobalamin (vitamin B12) biosynthesis. Nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.
Probab=100.00 E-value=3.6e-38 Score=262.43 Aligned_cols=188 Identities=25% Similarity=0.332 Sum_probs=146.7
Q ss_pred HHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccccccc
Q psy144 59 YQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDL 138 (254)
Q Consensus 59 ~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 138 (254)
+++|++|||||+|++++||.|+|++||++|++|||++|+|||+|+||++++.+++|.+++.......... ...+.
T Consensus 1 ~e~i~~RRSiR~F~~~~V~~e~i~~ileaA~~APS~~N~Qpw~fvVv~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (196)
T cd02145 1 YRAIRWRRDVRHFFPDPVPEEVLERLLAAAHHAPSVGLSQPWRFIRVRDPATRAAIKALFEEERAEAAEA-----YPGER 75 (196)
T ss_pred ChHHHhhhhhhcCCCCCCCHHHHHHHHHHHHhCCCcCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHhh-----ccchh
Confidence 4789999999999999999999999999999999999999999999999999999998885543211000 00011
Q ss_pred hhhhhhHHhhhhcCCCeEEEEEeecCCccc--cccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhc
Q psy144 139 RPLKTSWQKEYLTTAPYLVVVFKQTYGFKE--EGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLL 216 (254)
Q Consensus 139 ~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~--~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~L 216 (254)
...........+.+||++++++.+...... .+......+...++|+|+|||+|+|+++||||||+++++. +.++++|
T Consensus 76 ~~~~~~~~~~~~~~ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~nl~LaA~~~Glgt~~~~~~~~-~~v~~~l 154 (196)
T cd02145 76 AAEYARLKLEGILEAPVNLAVFCDRDRAGGHVLGRATMPEMDLYSVVCAIQNLWLAARAEGLGVGWVSILDP-EALARLL 154 (196)
T ss_pred HHHHHHHHhhhhhcCCeEEEEEEecccccccCCCccCchhhhhhhHHHHHHHHHHHHHHcCCceEEecccCh-HHHHHHc
Confidence 111111123346889999999987543221 1111122345679999999999999999999999998875 8999999
Q ss_pred CCCCCceEEEEEeeccCCCCCCCCCC------CCCCcccceE
Q psy144 217 DRPGNEKLALLLPIGYPALDCTVPNL------KRKDIEDIIV 252 (254)
Q Consensus 217 glp~~~~~~~~l~vGyp~~~~~~p~~------~Rkpl~ei~~ 252 (254)
|+|+++.++++++||||+++.+.|.. +|+|+++|++
T Consensus 155 ~lp~~~~~~~~l~lGy~~~~~~~~~~~~~~~~~r~~~~~~~~ 196 (196)
T cd02145 155 GIPEDWEPVAYLCLGYVSEFPDTPELERAGWQKRRPLSDLVH 196 (196)
T ss_pred CcCCCcEEEEEEEEecCCCCCCCcHHHHhchhhcCcchhhcC
Confidence 99999999999999999988876642 6999999975
No 5
>PRK10828 putative oxidoreductase; Provisional
Probab=100.00 E-value=8.9e-38 Score=257.52 Aligned_cols=182 Identities=17% Similarity=0.295 Sum_probs=138.0
Q ss_pred HHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccc
Q psy144 56 EEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (254)
|++.++|++|||||+|++++|+.|+|++||++|++|||++|+|||+|+||++++ +++|.++....... ......+
T Consensus 1 m~~~~~i~~RRSvR~f~~~~v~~e~i~~ileaA~~APS~~N~Qpw~fvvv~~~~-~~~l~~~~~~~~~~---~~~~~~~- 75 (183)
T PRK10828 1 MDALELLLNRRSASRLAEPAPTGEQLQNILRAGMRAPDHGSLQPWRFFVIEGEG-RERFSALLEQGAIA---AGSDEKA- 75 (183)
T ss_pred CcHHHHHHHcccccccCCCCcCHHHHHHHHHHHHhCcCcCCccceEEEEEccHH-HHHHHHHHHHHHHh---cCCCHHH-
Confidence 358899999999999999999999999999999999999999999999999976 56676654321100 0000000
Q ss_pred ccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccC-CCChHHHHh
Q psy144 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTP-LNAGPALRT 214 (254)
Q Consensus 136 ~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~-~~~~~~v~~ 214 (254)
. ......+.+||++|+++.+..... .........|+|+|+|||+|+|+++||||||+++ +.+.+.+++
T Consensus 76 -----~--~~~~~~~~~Ap~~ivv~~~~~~~~----~~~~~~~~~d~~~a~~nl~LaA~a~GlGs~w~~~~~~~~~~~~~ 144 (183)
T PRK10828 76 -----I--EKARNAPFRAPLIITVVAKCEENH----KVPRWEQEVSAGCAVMAMQMAAVAQGFNGIWRSGAWTESPVVRE 144 (183)
T ss_pred -----H--HHHHhhcccCCEEEEEEEecCCCC----CCCHHHHHHHHHHHHHHHHHHHHHCCCCeEeecCCCccCHHHHH
Confidence 0 111234568999999887532110 0011123469999999999999999999999964 455589999
Q ss_pred hcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEeC
Q psy144 215 LLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254 (254)
Q Consensus 215 ~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~~ 254 (254)
+||+|+++.++++|+||||+...+. ..+|+|++|+++|+
T Consensus 145 ~L~ip~~~~~~~~i~lGyp~~~~~~-~~~r~~~~~~~~~~ 183 (183)
T PRK10828 145 AFGCREQDKIVGFLYLGTPQLKAST-TINPPDPTPFVTYF 183 (183)
T ss_pred HcCCCCCCEEEEEEEeeCCCCCCCC-CCCCCCHHHhceeC
Confidence 9999999999999999999985430 35799999999985
No 6
>cd02149 NfsB_like_nitroreductase NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.
Probab=100.00 E-value=3.7e-37 Score=247.73 Aligned_cols=155 Identities=22% Similarity=0.383 Sum_probs=133.3
Q ss_pred HHHHHHHhccccCCCCCC-CCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccc
Q psy144 57 EFYQLMNARRTVRFFSDE-AVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135 (254)
Q Consensus 57 ~~~e~i~~RRSvR~F~~~-~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (254)
++.++|++|||+|+|+++ +|+.|+|++|+++|++|||++|+|||+|++|++++.+++|.+...
T Consensus 1 ~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~~a~~aPs~~n~qp~~~~vv~~~~~~~~l~~~~~---------------- 64 (157)
T cd02149 1 NILELLNFRYATKAFDPSKKISDEDLEEILEALRLSPSSFGLQPWKFLVVENEELKARLAPAAW---------------- 64 (157)
T ss_pred ChHHHHHhCeehhccCCCCCCCHHHHHHHHHHHHHCcCcCCccCeEEEEeCCHHHHHHHhhhhh----------------
Confidence 467899999999999997 999999999999999999999999999999999988888876520
Q ss_pred ccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhh
Q psy144 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTL 215 (254)
Q Consensus 136 ~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~ 215 (254)
+.+.++.+||++|+++.+. .+...++|+++||++|+|+++||||||+|+++. ++++++
T Consensus 65 ---------~~~~~~~~ap~~i~~~~~~------------~~~~~d~~~a~~~l~LaA~~lGlgs~~i~~~~~-~~v~~~ 122 (157)
T cd02149 65 ---------FNQPQVTDASHLVVFLART------------DWAAKQAYIALGNMLLAAASLGIDSCPIEGFDP-AKLDEI 122 (157)
T ss_pred ---------cCCcccCCCCEEEEEEecH------------HHHHHHHHHHHHHHHHHHHHcCCCcCcccCcCH-HHHHHH
Confidence 1145678999999998764 144568999999999999999999999999865 899999
Q ss_pred cCCCC-CceEEEEEeeccCCCCCCCCCCCCCCcccc
Q psy144 216 LDRPG-NEKLALLLPIGYPALDCTVPNLKRKDIEDI 250 (254)
Q Consensus 216 Lglp~-~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei 250 (254)
||+|+ ++.++++++||||++... +..+|+|++||
T Consensus 123 l~l~~~~~~~~~~i~iGy~~~~~~-~~~~R~~~~e~ 157 (157)
T cd02149 123 LGLDEKGYGSSVMVALGYRSEEAK-LPKSRLPLEEV 157 (157)
T ss_pred hCCCcccCceEEEEEeeccCCccC-CCCcCCCcccC
Confidence 99997 456999999999988632 34579999985
No 7
>TIGR02476 BluB cob(II)yrinic acid a,c-diamide reductase. The BluB protein is related to the nitroreductase family (pfam0881), and is found to substitute for the FldA cobalt reductase in aerobic species (by phylogenetic profiling). BluB is also found to be preceded by B12 promoter elements elements. The gene in R. capsulatus has been shown to be essential for cobalamin biosynthesis.
Probab=100.00 E-value=1.6e-36 Score=254.24 Aligned_cols=190 Identities=23% Similarity=0.337 Sum_probs=145.0
Q ss_pred HHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccc
Q psy144 55 SEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEW 134 (254)
Q Consensus 55 ~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 134 (254)
...|.++|++|||||+|++++||+++|++||++|++|||++|+|||+|+||++++.+++|.+++......... .+
T Consensus 6 ~~~~~~~i~~RRSiR~f~~~~i~~e~l~~il~aA~~APS~~n~Qpw~fvvv~~~e~~~~l~~~~~~~~~~~~~-----~~ 80 (205)
T TIGR02476 6 RAAVYRLIRERRDVRHFRSDPVPEAVLERLLDAAHHAPSVGFSQPWRFVRVESPATREAVHALFTRANQAAAA-----IY 80 (205)
T ss_pred HHHHHHHHHhhhhhhcCCCCCCCHHHHHHHHHHHHhCCCcCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHhh-----hc
Confidence 3689999999999999999999999999999999999999999999999999998888888876432211110 00
Q ss_pred cccchhhhhhHHhhhhcCCCeEEEEEeecCCcc--ccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHH
Q psy144 135 TTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFK--EEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPAL 212 (254)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~--~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v 212 (254)
...............+.+||++++++.+..... ..+......+...++|+|+|||+|+|+++||||||+++++. +.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~aP~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~g~A~~nl~LaA~~~GlGs~~~~~~~~-~~v 159 (205)
T TIGR02476 81 DGERASQYHRLKLEGIREAPVQLAVFCDDARGEGHGLGRHTMPEMLRYSVACAIQNLWLAARAEGLGVGWVSILDP-DAV 159 (205)
T ss_pred chhhHHHHHHhhhcchhcCCeEEEEEeeccccccccccccccchhhhccHHHHHHHHHHHHHHCCCcceeecccCh-HHH
Confidence 000000011112345689999999998753211 01111122345678999999999999999999999998875 899
Q ss_pred HhhcCCCCCceEEEEEeeccCCCCCCCCCC------CCCCcccc
Q psy144 213 RTLLDRPGNEKLALLLPIGYPALDCTVPNL------KRKDIEDI 250 (254)
Q Consensus 213 ~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~------~Rkpl~ei 250 (254)
+++||||+++.++++++||||++....|.+ +|+|++++
T Consensus 160 ~~~L~lp~~~~~~~~l~iGyp~~~~~~~~~~~~~~~~~~~~~~~ 203 (205)
T TIGR02476 160 RRLLGVPEGWRLVAYLCLGWPDAFYDEPELERAGWQERRPLEWR 203 (205)
T ss_pred HHHhCcCCCceEEEEEEeecCCccCCCCchhhcCchhcCchhhh
Confidence 999999999999999999999987766643 48898876
No 8
>cd02138 Nitroreductase_2 Nitroreductase-like family 2. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=100.00 E-value=1.3e-36 Score=250.11 Aligned_cols=170 Identities=23% Similarity=0.325 Sum_probs=139.5
Q ss_pred HHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCH-HHHHHHHHHHHHhhhhhhhhhhcccc
Q psy144 56 EEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDK-DMKAKIRDIVESEERINYDKRMGKEW 134 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 134 (254)
-++.++|++|||||+|++++|+.++|++|+++|++|||++|+|||+|+||+++ +.++++...+.
T Consensus 3 ~~~~~~i~~RrSvR~f~~~~v~~e~l~~il~~a~~APs~~n~qpw~f~vv~~~~~~~~~~~~~~~--------------- 67 (181)
T cd02138 3 YPIDPLILNRWSPRAFDGEPVPREDLLSLLEAARWAPSAYNDQPWRFVYARRGTEAWEKFLSLLV--------------- 67 (181)
T ss_pred CCHHHHHHHhcCcccCCCCCCCHHHHHHHHHHHHhCCCcCCCCCEEEEEeCCcHHHHHHHHHHHh---------------
Confidence 36789999999999999999999999999999999999999999999999998 55555544321
Q ss_pred cccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHh
Q psy144 135 TTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRT 214 (254)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~ 214 (254)
.+.+.++.+||++|+++.+...... ......+...++|++++|++|+|+++||||||+|+++. +.+++
T Consensus 68 ---------~~~~~~~~~Ap~~iiv~~~~~~~~~--~~~~~~~~~~d~g~a~~nl~Laa~~lGlgt~~~~~~~~-~~l~~ 135 (181)
T cd02138 68 ---------EGNQGWAKNAPALIAVLSKTTFDKN--EGKPNRTHSFDTGAAWGNLALQATAMGLAAHQMGGFDA-DKARE 135 (181)
T ss_pred ---------hhchhHHhCCCEEEEEEEccccccc--CCCccchhhhhHHHHHHHHHHHHHHcCcccceecCcCH-HHHHH
Confidence 1224567899999999887532111 11123466789999999999999999999999999876 89999
Q ss_pred hcCCCCCceEEEEEeeccCCCCCC--------CCCCCCCCcccceE
Q psy144 215 LLDRPGNEKLALLLPIGYPALDCT--------VPNLKRKDIEDIIV 252 (254)
Q Consensus 215 ~Lglp~~~~~~~~l~vGyp~~~~~--------~p~~~Rkpl~ei~~ 252 (254)
+||+|+++.++++++||||++... .....|+|++++++
T Consensus 136 ~l~l~~~~~~~~~laiG~~~~~~~~~~~~~~~~~~~~r~~~~~vv~ 181 (181)
T cd02138 136 ELNIPEDYEVEAAIAIGYLGDRATLPEDLQERESPRSRKPLSEIVF 181 (181)
T ss_pred HhCCCCCceEEEEEEeeccCccccCChhHhhhcCCCCCCChhhhcC
Confidence 999999999999999999987653 22357999999874
No 9
>PRK11053 dihydropteridine reductase; Provisional
Probab=100.00 E-value=7.2e-37 Score=258.53 Aligned_cols=177 Identities=20% Similarity=0.286 Sum_probs=141.3
Q ss_pred HHHHHHHHhccccCCCCC-CCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccc
Q psy144 56 EEFYQLMNARRTVRFFSD-EAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEW 134 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~-~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 134 (254)
|+|.++|++|||||+|++ ++||+++|++|+++|++|||++|+|||+|+||++++.+++|.+.+....
T Consensus 1 m~~~~~i~~RrSvR~f~~~~~v~~e~l~~ileaa~~APS~~N~Qpw~fvvV~~~e~~~~l~~~~~~~~------------ 68 (217)
T PRK11053 1 MDIVSVAKKRYTTKAFDPSKKLPAEQIEQIKTLLRFSPSSVNSQPWHFIVASTEEGKARIAKAAAGNY------------ 68 (217)
T ss_pred CcHHHHHHhceeeeccCCCCCCCHHHHHHHHHHHHhCCCcCCCcCeEEEEecCHHHHHHHHHHHhhhc------------
Confidence 468899999999999995 7999999999999999999999999999999999988999887653100
Q ss_pred cccchhhhhhHHhhhhcCCCeEEEEEeecCCccc-----------c-------------------------ccccccchh
Q psy144 135 TTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKE-----------E-------------------------GKRKKHYYH 178 (254)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~-----------~-------------------------~~~~~~~~~ 178 (254)
.+.+..+.+||++++++++...... . +......+.
T Consensus 69 ---------~~~~~~~~~a~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (217)
T PRK11053 69 ---------AFNERKILDASHVVVFCAKTDMDDAYLELVLEQEDADGRFATEEAKAAQDKGRRFFADMHRKELKDLQHWM 139 (217)
T ss_pred ---------cccchhhcCCCEEEEEEecCCCCHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 0124557899999999876321000 0 000112244
Q ss_pred hccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcCCCC-CceEEEEEeeccCCCCCC--CCCCCCCCcccceEeC
Q psy144 179 EMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPG-NEKLALLLPIGYPALDCT--VPNLKRKDIEDIIVEF 254 (254)
Q Consensus 179 ~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp~-~~~~~~~l~vGyp~~~~~--~p~~~Rkpl~ei~~~~ 254 (254)
..++|+|+++|+|+|+++||||||+++++. +.+++.||+|+ ++.++++|+||||+++.. .+...|+|++++++|+
T Consensus 140 ~~~~~ia~~~lmLaA~~~Glgs~~i~g~~~-~~v~~~l~ip~~~~~~~~~i~lGy~~~~~~~~~~~~~R~~~~e~v~~~ 217 (217)
T PRK11053 140 EKQVYLALGNLLLGAAALGIDATPIEGFDA-AILDAEFGLREKGLTSSVVVPLGYHSEEDFNAKLPKSRLPQETIFTEI 217 (217)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcCCcCH-HHHHHHhCCCCcCcceEEEEEeeccCccccccCCCCccCCHHHheeeC
Confidence 567999999999999999999999999875 99999999995 799999999999987431 1345799999999985
No 10
>PRK10765 nitroreductase A; Provisional
Probab=100.00 E-value=9.2e-37 Score=261.39 Aligned_cols=170 Identities=18% Similarity=0.231 Sum_probs=142.1
Q ss_pred HHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccc
Q psy144 56 EEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (254)
+++.++|.+|||||+|+++|||+|+|+.||++|++|||++|+|||+|++|++++.+++|.+++.
T Consensus 2 n~~~~~i~~RRSiR~F~~~~v~~e~l~~ileaA~~APSs~n~Q~~~~ivV~d~e~~~~l~e~~~---------------- 65 (240)
T PRK10765 2 TPTIELILSHRSIRHFTDEPISEAQREAIINAARAASSSSFLQCSSIIRITDKALREALVELTG---------------- 65 (240)
T ss_pred hHHHHHHHHcCccccCCCCCCCHHHHHHHHHHHHhCCCcccCCceEEEEECCHHHHHHHHHHhC----------------
Confidence 5789999999999999999999999999999999999999999999999999999999988752
Q ss_pred ccchhhhhhHHhhhhcCCCeEEEEEeecCCcc---cccc---ccccchhhccHHHHHHHHHHHHHHcCCccccccCC-CC
Q psy144 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFK---EEGK---RKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPL-NA 208 (254)
Q Consensus 136 ~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~---~~~~---~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~-~~ 208 (254)
.+.++.+||++++++.+..+.. +... .....+...|+|+++||++|+|+++||||||+|++ +.
T Consensus 66 ----------~q~~v~~a~~~lv~~~d~~r~~~~~~~~~~~~~~~~~~~~~Dagiaaqnl~laA~slGLGs~~ig~~~~~ 135 (240)
T PRK10765 66 ----------GQKYVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLLIGAVDTAIMAQNALLAAESLGLGGVYIGGLRNN 135 (240)
T ss_pred ----------CChHHHhchheEEEEEcHHHHHhhCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEeeCccccC
Confidence 1456789999999998754321 1000 00011345699999999999999999999999987 34
Q ss_pred hHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEe
Q psy144 209 GPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE 253 (254)
Q Consensus 209 ~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~ 253 (254)
.++++++||||++..++++++||||+.+.. ..+|+|+++++++
T Consensus 136 ~~~v~~~L~LP~~~~~v~~l~iGyp~~~~~--~kpR~p~~~v~~~ 178 (240)
T PRK10765 136 IEAVTELLKLPQHVLPLFGLCLGWPAQNPD--LKPRLPASLLVHE 178 (240)
T ss_pred HHHHHHHhCcCCCceeEEEEEEeccCCCCC--CCCCCCHHHHHHH
Confidence 579999999999999999999999987653 4579999998764
No 11
>cd02139 Nitroreductase_3 Nitroreductase-like family 3. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=100.00 E-value=3.4e-36 Score=243.60 Aligned_cols=164 Identities=29% Similarity=0.484 Sum_probs=139.5
Q ss_pred HHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccccc
Q psy144 58 FYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTD 137 (254)
Q Consensus 58 ~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (254)
|+++|++|||+|+|++++||.++|.+|+++|++|||++|+|||+|++|++++.+++|.+.+
T Consensus 1 ~~~~i~~RrSvR~f~~~~v~~e~l~~ll~aa~~aPs~~n~qp~~~~vv~~~~~~~~l~~~~------------------- 61 (164)
T cd02139 1 FLDLIKKRRSVRKYKDDPVEEEKLERILEAARLAPSAKNLQPWRFIVVESEEGLKKLAAAY------------------- 61 (164)
T ss_pred ChHHhhhceeeeccCCCCCCHHHHHHHHHHHhhCCCCCCCCCeEEEEEeCHHHHHHHHHHh-------------------
Confidence 4689999999999999999999999999999999999999999999999988888887653
Q ss_pred chhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcC
Q psy144 138 LRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLD 217 (254)
Q Consensus 138 ~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lg 217 (254)
.++++.+||++|+++.+...... .......+..+|+|+++|||+|+|+++|||+||+++++. +.++++||
T Consensus 62 --------~~~~~~~ap~~ii~~~~~~~~~~-~~~~~~~~~~~d~g~a~~~l~l~A~~~Glgt~~~~~~~~-~~~~~~l~ 131 (164)
T cd02139 62 --------ARKWLQTAPVVIVVCGDKNEAWV-RKIDGKNSYETDLAIAMEHMMLAAAELGLGTCWIGAFDE-DEIKEALD 131 (164)
T ss_pred --------ccchhhcCCeEEEEEEcchhhcc-cccccCcchhhhHHHHHHHHHHHHHHcCCceeeeeccCH-HHHHHHhC
Confidence 14567899999999887543211 111123456789999999999999999999999999875 89999999
Q ss_pred CCCCceEEEEEeeccCCCCCCCCCCCCCCcccce
Q psy144 218 RPGNEKLALLLPIGYPALDCTVPNLKRKDIEDII 251 (254)
Q Consensus 218 lp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~ 251 (254)
+|+++.+++++++|||++... +..+|++++|++
T Consensus 132 l~~~~~~~~~i~iG~~~~~~~-~~~~R~~~~~~~ 164 (164)
T cd02139 132 IPENEEVVAILPLGYPAEDPK-RPKTRKPLDEIV 164 (164)
T ss_pred cCCCeEEEEEEeecCCCCCCC-CCcCCCChHhcC
Confidence 999999999999999997652 346799999875
No 12
>cd02136 Nitroreductase Nitroreductase family. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=100.00 E-value=1.3e-35 Score=243.11 Aligned_cols=175 Identities=21% Similarity=0.329 Sum_probs=136.3
Q ss_pred HHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccccc
Q psy144 58 FYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTD 137 (254)
Q Consensus 58 ~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (254)
+.++|++|||||+|++++||.++|++|+++|++|||++|+|||+|++|++ +.+++|.++... +...+.+.
T Consensus 1 ~~~~i~~RrSvR~f~~~~v~~e~l~~il~~a~~aPs~~n~q~~~f~vv~~-~~~~~l~~~~~~---------~~~~~~~~ 70 (178)
T cd02136 1 VDEAIKSRHSVRAFLPDPVPRETIEEILAAAQRAPSGCNTQPWQVYVVTG-EALDRLRQLYGA---------LGIAREDK 70 (178)
T ss_pred ChHHHhhchhhhcCCCCCCCHHHHHHHHHHHHhCccccCCCCEEEEEECc-HHHHHHHHHHHH---------cCCCcccH
Confidence 36799999999999999999999999999999999999999999999999 778888875321 11111100
Q ss_pred chhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCC-ChHHHHhhc
Q psy144 138 LRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLN-AGPALRTLL 216 (254)
Q Consensus 138 ~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~-~~~~v~~~L 216 (254)
............+.+||++|+++.+... ..+...++|+++|||+|+|+++||||||+|++. ..+.++++|
T Consensus 71 ~~~~~~~~~~~~~~~ap~~i~~~~~~~~---------~~~~~~~~g~a~~nl~Laa~~lGlgt~~~~~~~~~~~~~~~~l 141 (178)
T cd02136 71 AGRARQALRNFRFFGAPVGLFFTIDRRL---------GPGSALDLGMFLQTIMLAARARGLDTCPQAALAKYPDIVREEL 141 (178)
T ss_pred HHHHHHHhhcccccCCCEEEEEEecCCC---------CcchHHhHHHHHHHHHHHHHHcCCccccccccccCcHHHHHHh
Confidence 0000001112346789999888765421 124577999999999999999999999999874 347899999
Q ss_pred CCCCCceEEEEEeeccCCCCCCC--CCCCCCCcccce
Q psy144 217 DRPGNEKLALLLPIGYPALDCTV--PNLKRKDIEDII 251 (254)
Q Consensus 217 glp~~~~~~~~l~vGyp~~~~~~--p~~~Rkpl~ei~ 251 (254)
|+|+++.+++++++|||++.... ...+|+|++|++
T Consensus 142 ~l~~~~~~~~~l~iG~~~~~~~~~~~~~~R~~~~evi 178 (178)
T cd02136 142 GIPDDEMLVCGIALGYADPDAPVNNYRTPRAPLEEFV 178 (178)
T ss_pred CCCCCceEEEEEEeccCCCcCCcccccCCCCCccccC
Confidence 99999999999999999987642 246799999985
No 13
>cd02146 NfsA_FRP This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.
Probab=100.00 E-value=3.5e-36 Score=256.33 Aligned_cols=168 Identities=22% Similarity=0.379 Sum_probs=138.3
Q ss_pred HHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccccc
Q psy144 58 FYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTD 137 (254)
Q Consensus 58 ~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (254)
++++|++|||||+|++++||+++|++||++|++|||++|+|||+|+||++++.+++|.+++.
T Consensus 1 ~~~~i~~RRSvR~f~~~~V~~e~l~~ileaa~~APS~~N~Qpw~fvVv~~~~~~~~l~~~~~------------------ 62 (229)
T cd02146 1 TIETLLNHRSIRKFKDEPIPDETLETLIAAAQSAPTSSNLQAYSVIVVTDPELKAKLAELAG------------------ 62 (229)
T ss_pred ChHHHhhcceecCCCCCCCCHHHHHHHHHHHHHcCCcccCCceEEEEEcCHHHHHHHHHhhc------------------
Confidence 36899999999999999999999999999999999999999999999999998888877641
Q ss_pred chhhhhhHHhhhhcCCCeEEEEEeecCCccc----c-ccc------cccchhhccHHHHHHHHHHHHHHcCCccccccCC
Q psy144 138 LRPLKTSWQKEYLTTAPYLVVVFKQTYGFKE----E-GKR------KKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPL 206 (254)
Q Consensus 138 ~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~----~-~~~------~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~ 206 (254)
.+..+.+||++++++.+...... . +.. ....+...|+|+++|+|+|+|+++||||||+|++
T Consensus 63 --------~~~~~~~Ap~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~lGLgtc~ig~~ 134 (229)
T cd02146 63 --------GQPYVAQAPVFLVFCADFHRLAKIAEKHGGAEAALDNLESLLVAAVDAGLAAQNAAVAAESLGLGIVYIGGI 134 (229)
T ss_pred --------CCchHHhCCEEEEEEeehHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 13456789999988876432110 0 000 0112456799999999999999999999999987
Q ss_pred C-ChHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEe
Q psy144 207 N-AGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE 253 (254)
Q Consensus 207 ~-~~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~ 253 (254)
. ..+.++++||||+++.++++|+||||+++. +..+|+|+++++++
T Consensus 135 ~~~~~~v~~~L~lp~~~~~~~~ialGyp~~~~--~~~~R~~~~~~v~~ 180 (229)
T cd02146 135 RNDPEAVIELLNLPEYVFPVFGLAVGYPDQEP--PLKPRLPLEAVLHE 180 (229)
T ss_pred ccCHHHHHHHhCCCCCceEEEEEEeeccCCCC--CCCCCCChhHeeEe
Confidence 4 447899999999999999999999999864 34579999999875
No 14
>cd02137 Nitroreductase_1 Nitroreductase-like family 1. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=100.00 E-value=1.2e-35 Score=236.65 Aligned_cols=146 Identities=27% Similarity=0.449 Sum_probs=129.4
Q ss_pred HHHHhccccCCCCCC-CCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccccccc
Q psy144 60 QLMNARRTVRFFSDE-AVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDL 138 (254)
Q Consensus 60 e~i~~RRSvR~F~~~-~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 138 (254)
++|++|||+|+|+++ +|+.|+|++|+++|++|||++|+|||+|+++++++.++++...+.
T Consensus 2 ~~i~~RrSvR~f~~~~~v~~e~l~~il~~a~~aPs~~n~qp~~~~vi~~~~~~~~l~~~~~------------------- 62 (148)
T cd02137 2 DVIESRRSVRNFDPDAKIPREELKEILELATLAPSSFNLQPWRFVVVRDPEKKAKLAEAAM------------------- 62 (148)
T ss_pred cHHhhCccccccCCCCCCCHHHHHHHHHHHHHCcCcCCCCCeEEEEECCHHHHHHHHHHHc-------------------
Confidence 589999999999997 999999999999999999999999999999999888888776542
Q ss_pred hhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcCC
Q psy144 139 RPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDR 218 (254)
Q Consensus 139 ~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lgl 218 (254)
.+..+.+||++|+++.+. |+|+++|+++|+|+++||||||+|+++. +.++++||+
T Consensus 63 -------~~~~~~~ap~~i~~~~~~-----------------d~g~a~~~l~LaA~~~Glgs~~~~~~~~-~~i~~~l~l 117 (148)
T cd02137 63 -------NQPQVTTASAVILVLGDL-----------------NAGLAAMNLMLAARAYGYDTCPMGGFDA-EKVAELLNL 117 (148)
T ss_pred -------CCCccCCCCEEEEEEeCC-----------------hhHHHHHHHHHHHHHcCCCcCcCcCcCH-HHHHHHhCc
Confidence 134578999999988763 8999999999999999999999999876 899999999
Q ss_pred CCCceEEEEEeeccCCCCCCCCCCCCCCcccc
Q psy144 219 PGNEKLALLLPIGYPALDCTVPNLKRKDIEDI 250 (254)
Q Consensus 219 p~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei 250 (254)
|+++.+++++++|||+++. .+..+|+|++++
T Consensus 118 ~~~~~~~~~i~iGy~~~~~-~~~~~r~~~~~~ 148 (148)
T cd02137 118 PARYVPVMLIAIGKAAEEE-GPPSYRLPVDEV 148 (148)
T ss_pred CCCceeEEEEEecccCCCC-CCCCCCCChhhC
Confidence 9999999999999998761 235679999875
No 15
>TIGR03553 F420_FbiB_CTERM F420 biosynthesis protein FbiB, C-terminal domain. Coenzyme F420 differs between the Archaea and the Actinobacteria, where the numbers of glutamate residues attached are 2 (Archaea) or 5-6 (Mycobacterium). The enzyme in the Archaea is homologous to the N-terminal domain of FbiB from Mycobacterium bovis, and is responsible for glutamate ligation. Therefore it seems likely that the C-terminal domain of FbiB, modeled by this alignment, is involved in additional glutamate ligation.
Probab=100.00 E-value=3.4e-35 Score=244.04 Aligned_cols=186 Identities=26% Similarity=0.325 Sum_probs=135.9
Q ss_pred HHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccccccch
Q psy144 60 QLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLR 139 (254)
Q Consensus 60 e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (254)
++|++|||||+|++++|++|+|++||++|++|||++|+|||+|+||++++.+++|.+.+......... .... ...
T Consensus 1 ~~i~~RRSvR~f~~~~V~~e~l~~il~aA~~APS~~n~Qpw~fvvv~~~e~~~~l~~~~~~~~~~~~~-~~~~----~~~ 75 (194)
T TIGR03553 1 QAVLLRRSVRRFSDDPVDPDAVRAAVAAALTAPAPHHTRPVRFVWVEDAERRTRLLDAMADAWRADLR-ADGL----SAD 75 (194)
T ss_pred ChHHhccccccCCCCCCCHHHHHHHHHHHHhCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHHHHHhhh-hccC----chH
Confidence 57999999999999999999999999999999999999999999999999999998876432110000 0000 000
Q ss_pred hh-hhhHHhhhhcCCCeEEEEEeecCCcc--ccccc--cccchhhccHHHHHHHHHHHHHHcCCccccccCC-CChHHHH
Q psy144 140 PL-KTSWQKEYLTTAPYLVVVFKQTYGFK--EEGKR--KKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPL-NAGPALR 213 (254)
Q Consensus 140 ~~-~~~~~~~~~~~Ap~~ii~~~~~~~~~--~~~~~--~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~-~~~~~v~ 213 (254)
.. ........+.+||++++++....... ++... ....+...++|+++||++|+|+++||||||+|+. .+.+.++
T Consensus 76 ~~~~~~~~~~~~~~ap~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a~qnl~LaA~~~Glgt~~~~~~~~~~~~v~ 155 (194)
T TIGR03553 76 AIDRRVARGDILRDAPELVIPCLVPDGAHSYPDERRTAAEHTMFTVAVGAAVQNLLVALAVEGLGSCWVGSTIFAADVVR 155 (194)
T ss_pred HHHHHhhhhhhHhcCCeEEEEEEcccccccCCcccccccchhhHHhHHHHHHHHHHHHHHHcCCCeEEecCcccCHHHHH
Confidence 00 00011245789999999886432111 11000 0112224689999999999999999999999862 3348999
Q ss_pred hhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceE
Q psy144 214 TLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIV 252 (254)
Q Consensus 214 ~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~ 252 (254)
++||+|+++.++++|+||||+++.. ..+|++++++++
T Consensus 156 ~~l~lp~~~~~~~~i~iG~p~~~~~--~~~~r~~~~~~~ 192 (194)
T TIGR03553 156 AELDLPADWEPLGAVAVGHPAEPPG--PRPPRDPEDFLV 192 (194)
T ss_pred HHhCcCCCceEEEEEEEecCCCCCC--CCCCCCHHHccc
Confidence 9999999999999999999988653 346788888764
No 16
>cd02150 NADPH_oxidoreductase_1 NAD(P)H:flavin oxidoreductase-like family 1. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=100.00 E-value=6e-35 Score=236.91 Aligned_cols=159 Identities=27% Similarity=0.373 Sum_probs=134.3
Q ss_pred HHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccccccc
Q psy144 59 YQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDL 138 (254)
Q Consensus 59 ~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 138 (254)
+++|++|||+|.|++++|+.|+|++|+++|++|||++|+|||+|++|.+++.++++.....
T Consensus 1 ~~~i~~RrS~R~f~~~~i~~e~l~~il~~a~~aPs~~n~qp~~~~vv~~~~~~~~l~~~~~------------------- 61 (166)
T cd02150 1 LDAILTRRSVRKYTDEPVSDELIEKILRAAMAAPSAGNQQPWRFVVVRDRETLDKLAADLP------------------- 61 (166)
T ss_pred CcHHhhcchhhcCCCCCCCHHHHHHHHHHHhhCCCCCCCCCeEEEEEeCHHHHHHHHHhcc-------------------
Confidence 3689999999999999999999999999999999999999999999999887777655321
Q ss_pred hhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCC---hHHHHhh
Q psy144 139 RPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNA---GPALRTL 215 (254)
Q Consensus 139 ~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~---~~~v~~~ 215 (254)
.+.++.+||++|+++.+.... +...+...++|+++|||+|+|+++||||||+|+++. .+.+++.
T Consensus 62 -------~~~~~~~ap~~ii~~~~~~~~------~~~~~~~~~~g~a~~nl~Laa~~~Glgt~~~~~~~~~~~~~~~~~~ 128 (166)
T cd02150 62 -------YAGMLREAPVAIVVCLDPEAE------YERTMWVQDCAAAVQNILLAAHALGLGAVWLGVYPFEERVEKVREL 128 (166)
T ss_pred -------cchHHhcCCEEEEEEEccccc------ccccchHhHHHHHHHHHHHHHHHcCCceEEEecccccchHHHHHHH
Confidence 134678999999998876421 112355779999999999999999999999999873 5889999
Q ss_pred cCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceE
Q psy144 216 LDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIV 252 (254)
Q Consensus 216 Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~ 252 (254)
||+|+++.++++++||||+.... ..+|++++ +++
T Consensus 129 l~l~~~~~~~~~l~iG~~~~~~~--~~~r~~~~-~~~ 162 (166)
T cd02150 129 LGLPENVEPMAVIPIGYPAEEPG--PPDRRPPK-RIH 162 (166)
T ss_pred hCCCCCcEEEEEEEEEccCCCCC--CCccCccc-eEE
Confidence 99999999999999999998643 34788888 554
No 17
>cd02151 NADPH_oxidoreductase_2 NAD(P)H:flavin oxidoreductase-like family 2. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=100.00 E-value=8e-35 Score=235.26 Aligned_cols=146 Identities=27% Similarity=0.428 Sum_probs=123.9
Q ss_pred HHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccccc
Q psy144 58 FYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTD 137 (254)
Q Consensus 58 ~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (254)
|.++|++|||+|+|++++|+.++|++|+++|++|||++|+|||+|+||++++.++++.....
T Consensus 1 ~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~aPs~~n~Qp~~f~vv~~~~~~~~l~~~~~------------------ 62 (162)
T cd02151 1 FIELLKKRRSIRKFTDEPVEKEKVDALLKAALRAPSSRNRRPWEFIVVTDREKLQALSQAKE------------------ 62 (162)
T ss_pred ChHHHHhhchhhcCCCCCCCHHHHHHHHHHHHhCcCCCCCCCeEEEEECCHHHHHHHHHhhh------------------
Confidence 46899999999999999999999999999999999999999999999999887777655321
Q ss_pred chhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCC--------h
Q psy144 138 LRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNA--------G 209 (254)
Q Consensus 138 ~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~--------~ 209 (254)
+.+.++.+||++|+++.+... ..+...|+|+++||++|+|+++||||||+|++.. .
T Consensus 63 -------~~~~~~~~Ap~~i~~~~~~~~---------~~~~~~d~g~a~~nl~L~A~~lGlgtc~i~~~~~~~~~~~~~~ 126 (162)
T cd02151 63 -------HGSRFLAGAALAIVVVADPRK---------SDVWIEDASIAAIIIQLTAQDLGLGSCWVQIRGRMHDDGKTAE 126 (162)
T ss_pred -------hhhhhHhcCCEEEEEEecCCC---------CccHHHHHHHHHHHHHHHHHHCCCCeeEecccccccccchhhH
Confidence 113567899999999887531 1123569999999999999999999999986532 3
Q ss_pred HHHHhhcCCCCCceEEEEEeeccCCCCC
Q psy144 210 PALRTLLDRPGNEKLALLLPIGYPALDC 237 (254)
Q Consensus 210 ~~v~~~Lglp~~~~~~~~l~vGyp~~~~ 237 (254)
+.++++||+|+++.++++++||||++..
T Consensus 127 ~~~~~~l~lp~~~~~~~~i~iG~p~~~~ 154 (162)
T cd02151 127 EYVRRLLNIPEHLRVLCIIAIGYPAEER 154 (162)
T ss_pred HHHHHHhCcCCCceEEEEEEEeCCCCCC
Confidence 6899999999999999999999998753
No 18
>cd03370 NADH_oxidase NADPH_oxidase. Nitroreductase family containing NADH oxidase and other, uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=100.00 E-value=2.7e-34 Score=230.89 Aligned_cols=154 Identities=23% Similarity=0.430 Sum_probs=130.7
Q ss_pred HHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccccc
Q psy144 58 FYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTD 137 (254)
Q Consensus 58 ~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (254)
|.++|++|||+|+|++++|+.|+|++|+++|++|||++|+|||+|++|++++.+++|.+.+.
T Consensus 1 ~~~~i~~RrS~R~f~~~~i~~e~l~~il~~a~~aPs~~n~qp~~~~vv~~~~~~~~l~~~~~------------------ 62 (156)
T cd03370 1 VTEAIERRRSIRQFDTDPIPEDLLRRLLEAALRAPSAFNLQPWRIVVVQDPAQKEALFAAAL------------------ 62 (156)
T ss_pred ChHHHhhCeeecccCCCCCCHHHHHHHHHHHHHCcCcCCCCCeEEEEEcCHHHHHHHHHHhc------------------
Confidence 46899999999999999999999999999999999999999999999999888887776541
Q ss_pred chhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcC
Q psy144 138 LRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLD 217 (254)
Q Consensus 138 ~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lg 217 (254)
.+.++.+||++|+++.+.... ..+...++++++++++|+|+++||||||+++++. +.++++||
T Consensus 63 --------~~~~~~~ap~~ii~~~~~~~~--------~~~~~~d~~~~~~~l~L~A~~lGlgs~~i~~~~~-~~v~~~l~ 125 (156)
T cd03370 63 --------GQPQVLEAPVTVVFVADDYAW--------RAEGLKQAMIAAGFLLLAATALGLATSPMTGFDE-EKVKEALG 125 (156)
T ss_pred --------CCchhhCCCEEEEEEeCcHHH--------HHHHHHHHHHHHHHHHHHHHHcCCCcccCcCcCH-HHHHHHhC
Confidence 134678999999998874210 1123468999999999999999999999999875 89999999
Q ss_pred CCC-CceEEEEEeeccCCCCCCCCCCCCCCcc
Q psy144 218 RPG-NEKLALLLPIGYPALDCTVPNLKRKDIE 248 (254)
Q Consensus 218 lp~-~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ 248 (254)
+|+ ++.++++++||||++.... ..|+|+.
T Consensus 126 l~~~~~~~~~~i~iG~~~~~~~~--~~r~~~~ 155 (156)
T cd03370 126 LPGRDRAIAVVVAVGYPAEEPQH--PGRLRSR 155 (156)
T ss_pred cCCcCceEEEEEEeecCCCCCCC--CCCCCCC
Confidence 998 8999999999999886543 3577763
No 19
>cd02140 Nitroreductase_4 Nitroreductase-like family 4. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=100.00 E-value=1.2e-33 Score=234.64 Aligned_cols=182 Identities=20% Similarity=0.181 Sum_probs=125.8
Q ss_pred HHHHHHhccccCCCCC-CCCCHHHHHHHHHHh-ccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccc
Q psy144 58 FYQLMNARRTVRFFSD-EAVPKEIIHNIIKTA-GTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135 (254)
Q Consensus 58 ~~e~i~~RRSvR~F~~-~~V~~e~i~~il~~A-~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (254)
|.++|++|||||+|++ .+||+|+|++||++| ++|||++|+|||+|+||+++++ +++.+........... ...+.
T Consensus 1 ~~e~i~~RRSiR~f~~~~~V~~e~l~~ileaA~~~APS~~N~QPW~f~Vv~~~~~-~~~~~~~~~~~~~~~~---~~~~~ 76 (192)
T cd02140 1 FLEAIKARRSIYALGKNLPVSDDEIEEIVKEAVKHSPSSFNSQSSRAVILFGEEH-EKLWDIVKDTLRAIVP---AEAFA 76 (192)
T ss_pred CHHHHhhCeehhccCCCCCCCHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEChHH-HHHHHHHHHHHHhcCC---hhhcc
Confidence 4689999999999997 589999999999988 7999999999999999999863 4444333211100000 00011
Q ss_pred ccchhhhhhHHhhhhcCCCeEEEEEeecCCcc---cc---ccccccchhhccHHHHHHHHHHHHHHcCCccccccC-CCC
Q psy144 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFK---EE---GKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTP-LNA 208 (254)
Q Consensus 136 ~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~---~~---~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~-~~~ 208 (254)
.... . ......++..++++.+..... .+ .......+...|+|+++|||+|+|+++||||||.+. ...
T Consensus 77 ~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~nl~LaA~~~GlGs~~~~~~~~~ 150 (192)
T cd02140 77 ATKE----K--LDGFKAGYGTVLFFEDQAVVKGLQEKFPLYADNFPVWSEQSSGMAQIAVWTALAAEGIGANLQHYNPLI 150 (192)
T ss_pred cchh----H--HHHHHHhhceeeeeechHHHHHHHHHhHHHHhhCccchhhhhHHHHHHHHHHHHhCCCcccHHHhCccC
Confidence 0000 0 112355566666555421000 00 011122355679999999999999999999998763 223
Q ss_pred hHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccce
Q psy144 209 GPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDII 251 (254)
Q Consensus 209 ~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~ 251 (254)
.+.++++||+|+++.+++++++|||++.. +...|+|++|.+
T Consensus 151 ~~~v~~~l~ip~~~~~v~~i~lGyp~~~~--~~~~r~~~~~~~ 191 (192)
T cd02140 151 DEEVAKKWNIPSNWKLRAQLVFGSPEAPA--GEKTFIPDEDRF 191 (192)
T ss_pred CHHHHHhcCCCccceEEEEeecccCCCCC--CCCCcCchhccc
Confidence 48999999999999999999999998754 345799998854
No 20
>cd02135 Arsenite_oxidase Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-proteobacterial strain is able to oxidize arsenite to arsenate.
Probab=100.00 E-value=7.6e-33 Score=222.65 Aligned_cols=158 Identities=18% Similarity=0.320 Sum_probs=122.3
Q ss_pred HHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccccccch
Q psy144 60 QLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLR 139 (254)
Q Consensus 60 e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (254)
++|++|||||+|+++|||+|+|++||++|++|||++|+|||+|+||++++ ++++.+.+..... . .....
T Consensus 2 ~~i~~RrSvR~f~~~~v~~e~l~~il~aA~~APs~~n~Qpw~f~vv~~~~-~~~l~~~~~~~~~--~--------~~~~~ 70 (160)
T cd02135 2 DLLLTRRSIKKLTLPAPDREQLEQILEAAARAPDHGKLEPWRFIVIRGEA-RERLAELLAEAAA--R--------EPGAP 70 (160)
T ss_pred cHHHhcccchhcCCCCCCHHHHHHHHHHHHhCCCcCCccCeEEEEEechH-HHHHHHHHHHHHH--h--------ccCCC
Confidence 68999999999999999999999999999999999999999999999975 5566665432110 0 00001
Q ss_pred hhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCC-CChHHHHhhcCC
Q psy144 140 PLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPL-NAGPALRTLLDR 218 (254)
Q Consensus 140 ~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~-~~~~~v~~~Lgl 218 (254)
..........+.+||++|+++.+..... .........|+|+++||++|+|+++||||||+++. ...+.++++||+
T Consensus 71 ~~~~~~~~~~~~~ap~~i~~~~~~~~~~----~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~l~i 146 (160)
T cd02135 71 EEQIEKAREKALRAPLVIAVVAKPQPHP----KVPEWEQLLAAGAAIQNLLLAAHALGFGAVWRTGWAAYDPAVREALGL 146 (160)
T ss_pred HHHHHHHHccccCCCEEEEEEEecCCCC----CCCHHHHHHHHHHHHHHHHHHHHHCCCCeEeecCCcccCHHHHHHhCC
Confidence 1111123466789999999998764320 01112345699999999999999999999999864 445899999999
Q ss_pred CCCceEEEEEeecc
Q psy144 219 PGNEKLALLLPIGY 232 (254)
Q Consensus 219 p~~~~~~~~l~vGy 232 (254)
|+++.+++++++||
T Consensus 147 p~~~~~~~~i~lGy 160 (160)
T cd02135 147 AEGERIVGFLYIGT 160 (160)
T ss_pred CCCCEEEEEEEecC
Confidence 99999999999998
No 21
>PRK13294 F420-0--gamma-glutamyl ligase; Provisional
Probab=100.00 E-value=7.9e-33 Score=254.58 Aligned_cols=192 Identities=24% Similarity=0.276 Sum_probs=141.9
Q ss_pred HHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccc
Q psy144 56 EEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (254)
.-+.++|++|||+|+|++++||+|+|++||++|++|||++|+|||+|++|++++.+++|.+.+.......+. .....+.
T Consensus 251 ~~~~eaI~~RRSvR~F~~~pVp~E~I~~ILeAA~~APS~~N~QPWrFVVV~d~e~r~kL~~~~~~~~~~~l~-~~~~~~~ 329 (448)
T PRK13294 251 LGRREAVLLRRSVREFSDDPVDPEAVRRAVAAALTAPAPHHTRPVRFVWLRSAAVRTRLLDAMRDAWRADLR-ADGLSEE 329 (448)
T ss_pred HhHHHhhhcCCccccCCCCCCCHHHHHHHHHHHHhCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHHHHHhhh-hccccHH
Confidence 457899999999999999999999999999999999999999999999999998888888765321100000 0000000
Q ss_pred ccchhhhhhHHhhhhcCCCeEEEEEeecCCcccccc----ccccchhhccHHHHHHHHHHHHHHcCCccccccC-CCChH
Q psy144 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGK----RKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTP-LNAGP 210 (254)
Q Consensus 136 ~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~----~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~-~~~~~ 210 (254)
... +......++++||++|+++.+......... .....+...++|+++|||+|+|+++||||||+++ ..+.+
T Consensus 330 -~~~--~~~~~~~~~~~AP~lIvv~~~~~~~~~~~~~~~~~~e~~~~~~daG~AaqNL~LAA~alGLGScwig~~~~d~~ 406 (448)
T PRK13294 330 -SIA--RRVRRGDILYDAPELVVPFLVPDGAHSYPDARRTAAERTMFTVAVGAAVQNLLVALAVEGLGSCWIGSTIFAAD 406 (448)
T ss_pred -HHH--HHhhhcchhhcCCeEEEEEEeccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHCCCcEEEecccccChH
Confidence 000 001123457899999998875432111100 0012244579999999999999999999999986 23348
Q ss_pred HHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEe
Q psy144 211 ALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE 253 (254)
Q Consensus 211 ~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~ 253 (254)
.++++||+|+++.+++++++|||++... ..+|++.++++.+
T Consensus 407 ~Vre~LgLPe~~~~v~~IaIGyPa~~~~--~k~rr~~ee~~~~ 447 (448)
T PRK13294 407 VVRAVLDLPADWEPLGAVAIGHPAEPPG--PRPPRDPGDFLVE 447 (448)
T ss_pred HHHHHhCcCCCcEEEEEEEEeCcCCCCC--CCCCCCHHHceee
Confidence 9999999999999999999999988643 4578899998875
No 22
>PF00881 Nitroreductase: Nitroreductase family; InterPro: IPR000415 This entry represents a family of proteins consisting of nitroreductase enzymes and related oxidoreductases. Members of this family utilise FMN as a cofactor and are often found to be homodimers. Possible characteristics include Oxygen-insensitive NAD(P)H nitroreductase (FMN-dependent nitroreductase) (Dihydropteridine reductase) (1.6.99.7 from EC) and NADH dehydrogenase (1.6.99.3 from EC). A number of the proteins are described as oxidoreductases. They are primarily found in bacterial lineages though a number of eukaryotic homologs have been identified: Caenorhabditis elegans P34273 from SWISSPROT, Drosophila melanogaster (Fruit fly) Q8T3Q0 from SWISSPROT Q9VTE7 from SWISSPROT, Mus musculus (Mouse) Q9DCX8 from SWISSPROT and Homo sapiens (Human) O75989 from SWISSPROT. This protein is not found in photosynthetic eukaryotes. The sequences containing this entry in photosynthetic organisms are possible false positives. ; GO: 0016491 oxidoreductase activity; PDB: 1BKJ_A 2BKJ_B 3OF4_C 3E39_B 3GBH_B 2R01_A 1YWQ_A 2WZW_B 2WZV_B 2ISL_H ....
Probab=99.97 E-value=1.1e-31 Score=215.61 Aligned_cols=164 Identities=22% Similarity=0.345 Sum_probs=125.9
Q ss_pred HHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccccccchhh
Q psy144 62 MNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPL 141 (254)
Q Consensus 62 i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (254)
|++|||+|.|++++||.++|++|+++|+++||++|+|||+|+++.+++.++++.+.+...............+ .
T Consensus 1 i~~RrS~R~f~~~~v~~~~l~~il~~a~~aPs~~~~~p~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 74 (165)
T PF00881_consen 1 IRNRRSIRDFDPEPVPDEDLEEILEAARWAPSSGNLQPWRFYVVNDQEGRYRLADAAHEAIREKEASADEASS------R 74 (165)
T ss_dssp HHHSSB-SSBESTSSEHHHHHHHHHHHHTS--GGGGGGEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
T ss_pred CcccEeccccCCCCCCHHHHHHHHHHHHHhhhcccccchheeeecccccccchHHHHHHHHHHhhcchhhHHH------h
Confidence 7899999999999999999999999999999999999999999998888888888775432211111000000 0
Q ss_pred hhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHH-HHhhcCCCC
Q psy144 142 KTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPA-LRTLLDRPG 220 (254)
Q Consensus 142 ~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~-v~~~Lglp~ 220 (254)
.....+..+.+||++++++.........+......++.+++|+++|+|+|+|+++|||+||++++.. .. ++++||+|+
T Consensus 75 ~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~l~L~a~a~Gl~~~~~~~~~~-~~~~~~~lgl~~ 153 (165)
T PF00881_consen 75 AAAGNQKAIKGAPVLIIITSIFPREEAKYGERSYRWALIDAGIAAQNLLLAATALGLGSCPMGGFDD-DKELKELLGLPD 153 (165)
T ss_dssp HHTTHHHHHHHSSEEEEEHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEGGSGH-HHHHHHHHTHHT
T ss_pred HHHhhhhHHHhCchheeeecccccccccccccccHHHHHHHHHHHHHHHHHHHhcCceEEEecCcch-HHHHHHHhCcCC
Confidence 0123466788999999983332222233334556788899999999999999999999999999986 55 999999999
Q ss_pred CceEEEEEeecc
Q psy144 221 NEKLALLLPIGY 232 (254)
Q Consensus 221 ~~~~~~~l~vGy 232 (254)
++.++++++|||
T Consensus 154 ~~~~~~~i~vGy 165 (165)
T PF00881_consen 154 NEEPLALIAVGY 165 (165)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCEEEEEEEecC
Confidence 999999999998
No 23
>cd02143 NADH_nitroreductase Nitroreductase family. Members of this family utilize FMN as a cofactor. This family is involved in the reduction of flavin or nitroaromatic compounds by using NAD(P)H as electron donor in a obligatory two-electron transfer. Nitrogenase is homodimer. Each subunit contains one FMN molecule. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=99.97 E-value=1.2e-30 Score=207.77 Aligned_cols=134 Identities=28% Similarity=0.409 Sum_probs=114.4
Q ss_pred HHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccccccchh
Q psy144 61 LMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRP 140 (254)
Q Consensus 61 ~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (254)
+|++|||+|+|++++|+.++|++|+++|++|||++|+|||+|++++++. . .+
T Consensus 1 ~i~~RrSvR~F~~~~i~~~~l~~il~aa~~aPs~~n~qp~~f~vv~~~~------~-------------~~--------- 52 (147)
T cd02143 1 LLRGRRSVRHYRPEPVPRETIERLLDIARYAPTGSNSQPVHFTVVDDPW------E-------------KG--------- 52 (147)
T ss_pred CcccceeeecCCCCCCCHHHHHHHHHHHhhCCCCCCCCCeEEEEEeCHH------H-------------cC---------
Confidence 4789999999999999999999999999999999999999999998750 0 00
Q ss_pred hhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCC----hHHHHhhc
Q psy144 141 LKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNA----GPALRTLL 216 (254)
Q Consensus 141 ~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~----~~~v~~~L 216 (254)
.+.++.+||++|+++++.... ....|+|+++|+|+|+|+++||||||+|++.. .++++++|
T Consensus 53 -----~~~~~~~ap~~i~~~~~~~~~----------~~~~d~g~a~~~l~LaA~~lGlgs~~~~~~~~~~~~~~~~~~~l 117 (147)
T cd02143 53 -----IDPIFRGAPHLLLASAPRDFP----------TAQVDAIIALTYFELAAQALGLGTCWAGFFQAAAELYPPLRDRL 117 (147)
T ss_pred -----cCceecCCCEEEEEEECCCCC----------CccchHHHHHHHHHHHHHHcCCCEehhhhHHHHhhhhHHHHHHc
Confidence 124578999999998865321 34669999999999999999999999987542 37899999
Q ss_pred CCCCCceEEEEEeeccCCCCC
Q psy144 217 DRPGNEKLALLLPIGYPALDC 237 (254)
Q Consensus 217 glp~~~~~~~~l~vGyp~~~~ 237 (254)
++|+++.++++++||||+...
T Consensus 118 ~lp~~~~~~~~iaiG~~~~~~ 138 (147)
T cd02143 118 GLPEGHKVGYAMMFGYPAVKP 138 (147)
T ss_pred CcCCCcEEEEEEEEecCCCCC
Confidence 999999999999999998854
No 24
>COG0778 NfnB Nitroreductase [Energy production and conversion]
Probab=99.96 E-value=4.4e-29 Score=207.08 Aligned_cols=173 Identities=26% Similarity=0.421 Sum_probs=134.8
Q ss_pred HHHHHHHHHhccccCCCC-CCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCH-HHHHHHHHHHHHhhhhhhhhhhcc
Q psy144 55 SEEFYQLMNARRTVRFFS-DEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDK-DMKAKIRDIVESEERINYDKRMGK 132 (254)
Q Consensus 55 ~~~~~e~i~~RRSvR~F~-~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~-~~~~~l~~~~~~~~~~~~~~~~~~ 132 (254)
.+.+++++++|||+|.|+ ++||+.|+|++||++|++|||++|+|||+|++|+++ +.+++|.+.....
T Consensus 2 ~~~~~~~i~~RrS~R~f~~~~pi~~e~l~~il~aa~~aPs~~n~qpw~fi~v~~~~~~~~~l~~~~~~~----------- 70 (207)
T COG0778 2 LMDILEAIRSRRSIRKFDSPKPIPEEDLEKILEAARLAPSAGNLQPWRFIVVRDEDELKAALAELAGGG----------- 70 (207)
T ss_pred chHHHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhCcCccCCcceEEEEEcCcHHHHHHHHHhhhhh-----------
Confidence 478999999999999999 799999999999999999999999999999999999 8888887743210
Q ss_pred cccccchhhhhhHHhhhhcCCCeEEEEEeecCC--------cc----------------ccccccccchhhccHHHHHHH
Q psy144 133 EWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYG--------FK----------------EEGKRKKHYYHEMSVSLACGI 188 (254)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~--------~~----------------~~~~~~~~~~~~~~~g~a~~~ 188 (254)
+..+..++..++++.+... .. ..+......+...++++++||
T Consensus 71 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~n 136 (207)
T COG0778 71 --------------QAQLKEASALLAVLADLESLDKVAEGRAPDLGAAVFLLAERRKLLGYGRRAALEYALDAASIAAQN 136 (207)
T ss_pred --------------hhhcccCCeEEEEEeehhhhhhcccccccHHHHHHHhcccchhhcccchhhhHHHHHHHHHHHHHH
Confidence 2345667777766665430 00 001122234566678889999
Q ss_pred HHHHHHHcCCccccccCCCChHHHHhhcCC----CCCceEEEEEeeccCCCCCCCCCCCCCCcccceEe
Q psy144 189 MLAAIQYCGLVTLTSTPLNAGPALRTLLDR----PGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE 253 (254)
Q Consensus 189 l~Laa~a~Glgs~~~~~~~~~~~v~~~Lgl----p~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~ 253 (254)
++|+|.++||||||++++.. ..+.+.+++ +..+.+++++++|||+.+.......|+|.++++++
T Consensus 137 l~Laa~~~Glg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~lG~~~~~~~~~~~~r~~~~~~~~~ 204 (207)
T COG0778 137 LLLAAEALGLGSCWIGGFDA-EDLKELLRELLGLPEEEKPVGLLALGYPAEEPPPRLKPRLPLEEVVHY 204 (207)
T ss_pred HHHHHHHcCCCcccCccccH-HHHHHHHhcccccCcceeEEEEEEeecCCCCcCcCCccCCChhHheee
Confidence 99999999999999999986 555555554 44489999999999998655334689999998876
No 25
>cd02062 Nitro_FMN_reductase Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.
Probab=99.96 E-value=1.9e-28 Score=188.17 Aligned_cols=120 Identities=32% Similarity=0.542 Sum_probs=105.6
Q ss_pred HHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccccccchhh
Q psy144 62 MNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPL 141 (254)
Q Consensus 62 i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (254)
|+.|||+|+|++++|+.++|++|+++|++|||++|+|||+|+++
T Consensus 1 ~~~RrS~R~f~~~~i~~~~l~~l~~~~~~aPs~~n~qp~~~~~v------------------------------------ 44 (122)
T cd02062 1 ILKRRSVRKFTDEPVPEEVLEKILEAARYAPSGGNLQPWRFVVV------------------------------------ 44 (122)
T ss_pred CccceecccCCCCCCCHHHHHHHHHHHHhCCCcCCCCCEEEEEE------------------------------------
Confidence 46899999999999999999999999999999999999999999
Q ss_pred hhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCC--ChHHHHhhcCCC
Q psy144 142 KTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLN--AGPALRTLLDRP 219 (254)
Q Consensus 142 ~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~--~~~~v~~~Lglp 219 (254)
.+||++|+++.+.....+ ...+..+++|+++++|+|+|+++|||+||++++. . +++++.||+|
T Consensus 45 ---------~~ap~~i~~~~~~~~~~~-----~~~~~~~~~g~a~~~l~l~a~~~Glg~~~~~~~~~~~-~~~~~~l~l~ 109 (122)
T cd02062 45 ---------YGAPVLIIVCADKDAARP-----SGPWAEADAGIAAQNILLAAHALGLGSCWIGGLDLVE-EELRELLGIP 109 (122)
T ss_pred ---------eCCCEEEEEEeccccccc-----cCccHHhHHHHHHHHHHHHHHHcCCCchhcCCcccch-HHHHHHhCcC
Confidence 156778888776543211 1235678999999999999999999999999887 5 8999999999
Q ss_pred CCceEEEEEeecc
Q psy144 220 GNEKLALLLPIGY 232 (254)
Q Consensus 220 ~~~~~~~~l~vGy 232 (254)
+++.+++++++||
T Consensus 110 ~~~~~~~~l~~G~ 122 (122)
T cd02062 110 EGYEILAVIAVGY 122 (122)
T ss_pred CCcEEEEEEEeeC
Confidence 9999999999998
No 26
>cd02142 mcbC-like_oxidoreductase This family is the oxydase domain of NRPS (non-ribosomal peptide synthetase) and other proteins that modify polypeptides by cyclizing a thioester to form a ring. These include epoB, part of the epothilone biosynthesis pathway; tubD, part of the tubulysin biosynthesis pathway, mtsD, part of the myxothiozol biosynthesis pathway; indC, part of the indigoidine biosynthesis pathway and tfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.
Probab=99.83 E-value=3.7e-20 Score=151.52 Aligned_cols=166 Identities=18% Similarity=0.196 Sum_probs=118.1
Q ss_pred HHhccccCCCCCCCCC-HHHHHHHHHHh----------ccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhh
Q psy144 62 MNARRTVRFFSDEAVP-KEIIHNIIKTA----------GTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRM 130 (254)
Q Consensus 62 i~~RRSvR~F~~~~V~-~e~i~~il~~A----------~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~ 130 (254)
+.+|||+|.|++++++ ...+..++... +.+||+++++|++++++.+. .+.|...+........ ++
T Consensus 1 ~~~R~S~r~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~pS~g~l~~~~~y~~~~~--v~gl~~G~Y~y~~~~~--~L 76 (180)
T cd02142 1 LLRRRSTRRFLDEPLPSLLGLLLLLSRVLGLASGLLPLRTYPSAGALYPIEVYLVVGR--VEGLAAGLYHYDPLEH--SL 76 (180)
T ss_pred CCccccccccCCCCCchHHHHHHHHHHhccccCCCcccccCCCCCCCcceEEEEEEcc--cCCCCCccEEEcCCCC--EE
Confidence 3589999999999999 77777777543 67999999999999987653 1222222211111000 00
Q ss_pred cccccccch-hh-hhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCC
Q psy144 131 GKEWTTDLR-PL-KTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNA 208 (254)
Q Consensus 131 ~~~~~~~~~-~~-~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~ 208 (254)
......+.. .+ .....+.++.+||++|+++.+.....+.++.+...+..+++|+++|+++++|+++|||+||+++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~y~~~~~~~~~~d~G~~~q~l~l~a~~~glg~~~~~~~~~ 156 (180)
T cd02142 77 ELLRAGDLRDALRHAALNQAFAADAAFSLFLVADFSRIEWKYGERAYRYALMEAGHLGQNLYLAATALGLGTCAIGAFDD 156 (180)
T ss_pred EEEecCcHHHHHHHHHcCChhhhCCCEEEEEEEeecHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEcH
Confidence 000000000 00 1112256788999999999887655454445556677899999999999999999999999999886
Q ss_pred hHHHHhhcCCCC-CceEEEEEeecc
Q psy144 209 GPALRTLLDRPG-NEKLALLLPIGY 232 (254)
Q Consensus 209 ~~~v~~~Lglp~-~~~~~~~l~vGy 232 (254)
+.++++||+|+ ++.+++++++|+
T Consensus 157 -~~v~~~l~l~~~~~~~~~~~~vG~ 180 (180)
T cd02142 157 -DALAELLGLDGLEEQPLYAFTVGR 180 (180)
T ss_pred -HHHHHHhCCCCcccceEEEEeccC
Confidence 89999999998 999999999995
No 27
>TIGR03605 antibiot_sagB SagB-type dehydrogenase domain. SagB of Sterptococcus pyogenes participates in the maturation of streptolysin S from a ribosomally produced precursor polypeptide. Chemically similar systems operate on highly diverse sets of bacteriocin precursors in numerous other bacteria. This model describes a domain within SgaB and homologous regions from other proteins, many of which appear to be involved in biosynthesis of secondary metabolites. While some substrates may be intermediates in non-ribosomal peptide syntheses, others are involved in heterocycle-containing bacteriocin biosynthesis, and can be found near SgaC-like (see TIGR03603, cyclodehydratase) and SgaD-like (see TIGR03604, "docking") proteins. Members of this domain family are heterogeneous in length, as many have a partial second copy of the domain represented here. The incomplete second domain scores below the cutoffs to this model in most cases.
Probab=99.71 E-value=8.7e-17 Score=131.29 Aligned_cols=139 Identities=12% Similarity=0.116 Sum_probs=98.8
Q ss_pred ccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccccc--cchhhhh--hHHhhhhcCCCeEEEEEeecC
Q psy144 89 GTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTT--DLRPLKT--SWQKEYLTTAPYLVVVFKQTY 164 (254)
Q Consensus 89 ~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~Ap~~ii~~~~~~ 164 (254)
|.+||+|++.|.+++++-.. .+.|...+........ ++...... +...... ...+.++.+||++|+++.+..
T Consensus 30 r~~pSaG~l~p~~~y~~~~~--v~gl~~G~Y~Y~p~~h--~L~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~iv~~~~~~ 105 (173)
T TIGR03605 30 RSYPSGGGLYPLEIYLYVKN--IEGLPDGIYHYDPEEH--RLILIRAGEENVDAFLVNALLNTENANTPPIIIFIVARFW 105 (173)
T ss_pred eecCCCcccCcEEEEEEEeE--eCCCCCeeEEEcCCCC--EEEEeeCCccCHHHHHHHHHhCccccccCCEEEEEEEEec
Confidence 78999999999999988542 1223222221111110 11111111 2222111 122566889999999999887
Q ss_pred CccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcCCCC-CceEEEEEeecc
Q psy144 165 GFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPG-NEKLALLLPIGY 232 (254)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp~-~~~~~~~l~vGy 232 (254)
+..+.+..+..++..+|+|+++||++|+|+++|||+||+++++. ++++++||+|+ ++.+++++++|.
T Consensus 106 ~~~~~y~~~~~~~~~~daG~~~qnl~LaA~~~Glgs~~i~~f~~-~~v~~~L~l~~~~~~~~~~~~vG~ 173 (173)
T TIGR03605 106 KNFWKYGNRGYRLALLDSGIIIQNFYLVATALGLGSCAIGGFDD-DYIAELLGLDGIEESVVGVFPVGR 173 (173)
T ss_pred ccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEccccH-HHHHHHhCcCCccceeEEEEecCC
Confidence 66665555666788999999999999999999999999999987 89999999998 889999999994
No 28
>COG3560 FMR2 Predicted oxidoreductase related to nitroreductase [General function prediction only]
Probab=99.53 E-value=2.1e-13 Score=108.11 Aligned_cols=172 Identities=21% Similarity=0.223 Sum_probs=123.3
Q ss_pred HHHHHHHHHhccccCCCCCC-CCCHHHHHHHHHHh-ccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcc
Q psy144 55 SEEFYQLMNARRTVRFFSDE-AVPKEIIHNIIKTA-GTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGK 132 (254)
Q Consensus 55 ~~~~~e~i~~RRSvR~F~~~-~V~~e~i~~il~~A-~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~ 132 (254)
.++|+++|++|||+-...++ |+++|+|.++++.| +.+||+.|+|+-|.|++.+++ .+++.+++..+-..... ..
T Consensus 3 ~~~~~~ai~~RRTiYaL~k~lp~~~e~i~~~v~~avk~tPsaFNSQssR~ViL~gd~-h~KlWdivk~~l~~ivp---~~ 78 (200)
T COG3560 3 RMTFLNAIENRRTIYALKKNLPVSDEEIKEIVKEAVKHTPSAFNSQSSRVVILFGDE-HDKLWDIVKDELRAIVP---AE 78 (200)
T ss_pred hhHHHHHHHhhhhHhhcCCCCCCcHHHHHHHHHHHHhcCCcccccCCceEEEEeccc-hHHHHHHHHHHHHHhcc---cc
Confidence 47899999999999998876 99999999999866 679999999999999999875 57788876543221110 01
Q ss_pred cccccchhhhhhHHhhhhcCCCeEEEEEeecCC------ccccccccccchhhccHHHHHHHHHHHHHHcCCcccccc--
Q psy144 133 EWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYG------FKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTST-- 204 (254)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~------~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~-- 204 (254)
.|....++ -..+..+...|+++.+..- ..+.+.....-|++...|++.-+.|.|+.++|||+....
T Consensus 79 ~f~~t~~k------i~~f~ag~GtVLFfeDq~Vv~~LQeqfplYadnFPvwseqtsgm~Q~~vWtALa~~GlGAsLQHYN 152 (200)
T COG3560 79 AFEATERK------IDSFKAGYGTVLFFEDQNVVKGLQEQFPLYADNFPVWSEQTSGMAQIAVWTALAALGLGASLQHYN 152 (200)
T ss_pred cccccccc------cchhhhccceEEEEecchHHHHHHHHhHHHHhhCcchhhhcccHHHHHHHHHHHHcccccchhhcc
Confidence 12111111 1122233335555554321 122333334457788899999999999999999998764
Q ss_pred CCCChHHHHhhcCCCCCceEEEEEeeccCCCCC
Q psy144 205 PLNAGPALRTLLDRPGNEKLALLLPIGYPALDC 237 (254)
Q Consensus 205 ~~~~~~~v~~~Lglp~~~~~~~~l~vGyp~~~~ 237 (254)
++-+ +++.+..++|+++++.+-+++|.+...+
T Consensus 153 plid-aa~~k~wniP~sW~lraQmpFG~~~a~~ 184 (200)
T COG3560 153 PLID-AAVAKEWNIPESWKLRAQMPFGSIEAPA 184 (200)
T ss_pred hhHH-HHhhhhcCCCccceeeeecccCCCCCCC
Confidence 5555 8999999999999999999999987654
No 29
>PF14512 TM1586_NiRdase: Putative TM nitroreductase; PDB: 1VKW_A.
Probab=99.47 E-value=4e-14 Score=117.15 Aligned_cols=122 Identities=22% Similarity=0.320 Sum_probs=58.4
Q ss_pred HHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccc
Q psy144 56 EEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (254)
|+++|+|..|+|||+|.++++|.++.++|-... . ++ +++. + .|
T Consensus 1 M~i~EaI~~RhSVRky~dk~l~e~i~~~I~~l~--------i---~~--I~~~-----~------------------~~- 43 (206)
T PF14512_consen 1 MNIYEAIFKRHSVRKYLDKPLPEEIKEEIENLH--------I---QL--ITDK-----L------------------DW- 43 (206)
T ss_dssp --HHHHHHH--B---B--S---HHHHHHHHH------------------SS-----------------------------
T ss_pred CCHHHHHHHhcchhccCCCCCCHHHHHHHHHHH--------H---HH--hhhh-----h------------------cc-
Confidence 689999999999999999999988777664221 1 11 1110 0 00
Q ss_pred ccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhh
Q psy144 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTL 215 (254)
Q Consensus 136 ~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~ 215 (254)
+-.+.++|.+|+++.... . -....+|..++.+.|.|+++||||||+|.-..
T Consensus 44 -----------k~~~~~~~~yi~~~~~k~---------~--~~l~n~GY~gEqlvL~l~~lGLgTCWvg~~~~------- 94 (206)
T PF14512_consen 44 -----------KIKLSKAPNYIAAYSEKK---------D--DYLENAGYYGEQLVLYLQSLGLGTCWVGRSPN------- 94 (206)
T ss_dssp -----------EEE-SSSSEEEE----SS---------H--HHHHHHHHHHHHHHHHHHHTT-EEEEES--SS-------
T ss_pred -----------eecccCCCeEEEEEecCC---------c--chHHhcCHHHHHHHHHHHHcCCcceeeccccc-------
Confidence 112357788877665421 0 12457999999999999999999999974211
Q ss_pred cCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccce
Q psy144 216 LDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDII 251 (254)
Q Consensus 216 Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~ 251 (254)
..+.++|++||+..+.. ..+|+|+++++
T Consensus 95 ------~dl~~vI~~Gyg~~~~~--~~krk~~~~~~ 122 (206)
T PF14512_consen 95 ------PDLPCVIAFGYGKTQGF--THKRKPISEFK 122 (206)
T ss_dssp ------TT-S-EEEEE-BS------------HHHHB
T ss_pred ------CCceEEEEEeccCCCCc--ccccCcHHHHh
Confidence 12678999999977542 24688888764
No 30
>KOG3936|consensus
Probab=99.45 E-value=2.1e-14 Score=99.81 Aligned_cols=74 Identities=36% Similarity=0.601 Sum_probs=67.5
Q ss_pred CCCCCCC-cccCCCCCCCCCCCCCccCCCccCchhHhhhcHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhc
Q psy144 16 SNAESET-DEDDEFAPALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAG 89 (254)
Q Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~ 89 (254)
..|.-++ +++.++|....+...||||....++..+|+.++..||+.++.|||||+|+++.||.++|+.+|.+|.
T Consensus 25 ~aDkH~g~E~~~~dlhEn~~~e~~IPfr~~~indd~~lknSQ~FYEelk~RRScR~fSn~dVPleVI~NlikTAG 99 (100)
T KOG3936|consen 25 SADKHQGAEEDADDLHENEENEEHIPFRHNHINDDEMLKNSQEFYEELKKRRSCRFFSNEDVPLEVIDNLIKTAG 99 (100)
T ss_pred hhhhhcchhhhHHHHHHhhhhhhhcCccCCCCChHHHHHhHHHHHHHHHhhhhhhhhccccCcHHHHHHHHHhcc
Confidence 3566666 4556789999999999999999999999999999999999999999999999999999999999886
No 31
>PRK14851 hypothetical protein; Provisional
Probab=99.24 E-value=4.6e-11 Score=115.70 Aligned_cols=99 Identities=18% Similarity=0.199 Sum_probs=74.7
Q ss_pred HHHHHHHHhccccCCCCCCC-----------CCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhh
Q psy144 56 EEFYQLMNARRTVRFFSDEA-----------VPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERI 124 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~~~-----------V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~ 124 (254)
..+.+.+..|+|+|+|.++| |+.++|+.|+++|..|||++|+|||+|++..+.
T Consensus 292 ~di~~~iL~r~s~r~~~~~p~~~~~~~~~~~v~~~~i~~i~~aa~~APs~~N~Qpw~f~~~~~~---------------- 355 (679)
T PRK14851 292 LWYVQNVLIRNTDQARVREPEPPVSVAHFDSLPQGVGDYILQAGIQAPSGDNVQPWQFALAGND---------------- 355 (679)
T ss_pred HHHHHHHhcccCCCCCCCCCCccccccccCCCCHHHHHHHHHHHHhCcCcCCCCCeEEEEECCE----------------
Confidence 56667788999999999989 999999999999999999999999999986542
Q ss_pred hhhhhhcccccccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccc
Q psy144 125 NYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTS 203 (254)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~ 203 (254)
+.++.+..+..+.. ........+|+|++++|+.+||.++|+++|+.
T Consensus 356 --------------------------------i~l~~d~~r~~~~~-d~~~~~~~is~Gaal~nl~lAA~~~G~~~~v~ 401 (679)
T PRK14851 356 --------------------------------IHLYLDPEADVSFF-NVRQTASIISCGAVMENMRIAATTFGLDATTQ 401 (679)
T ss_pred --------------------------------EEEEeccccccccC-CcchhhHHHhHHHHHHHHHHHHHhCCCcceeE
Confidence 11211211111000 00112346899999999999999999999875
No 32
>PRK07877 hypothetical protein; Provisional
Probab=99.22 E-value=3.1e-10 Score=110.38 Aligned_cols=180 Identities=18% Similarity=0.269 Sum_probs=128.4
Q ss_pred HHHHHHHHHhccccC-CCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhh-----h
Q psy144 55 SEEFYQLMNARRTVR-FFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYD-----K 128 (254)
Q Consensus 55 ~~~~~e~i~~RRSvR-~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~-----~ 128 (254)
...+++.|..|||.| -|+++||+.+++..|..+|. .+..++.+++++..+.++.+++.....+.+. .
T Consensus 473 ~~~L~~aI~~R~TnR~pf~~~pv~~~~l~~L~~~a~-------~ega~L~~l~~~~~~~~la~lv~~adr~r~~dp~~~~ 545 (722)
T PRK07877 473 LAALYQPMLLRETNRHHGTPAPIDDATVEALTAAAA-------AEGARLHLLTDRDDIDAAAEILAAADRIRYLTPRLHE 545 (722)
T ss_pred hHHHHHHHHHcccCcCCCCCCCCCHHHHHHHHHHHh-------cCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 357999999999999 59999999999999998886 3578899999977788888888765443221 1
Q ss_pred hhcc--ccccc------c----------h----hhh---------hhH---------HhhhhcCCCeEEEEEeecCCccc
Q psy144 129 RMGK--EWTTD------L----------R----PLK---------TSW---------QKEYLTTAPYLVVVFKQTYGFKE 168 (254)
Q Consensus 129 ~~~~--~~~~~------~----------~----~~~---------~~~---------~~~~~~~Ap~~ii~~~~~~~~~~ 168 (254)
.+.. .|... + . .+. ..| ....+..+|.+++++.+.+.
T Consensus 546 El~~~iRW~~~~~~~~Glp~~algl~~~~~~~l~~lr~~~vm~~l~~~~~g~~l~~~~~~~~~~s~al~vl~t~~d~--- 622 (722)
T PRK07877 546 EMISELRWPGDDAPDTGIDVRTLELDPADLAGLDILRRPDVMARLARWDGGSALGDDTRDRVSSSSALAVVTVPGAT--- 622 (722)
T ss_pred HHHHhcCcCCCccccCCCCHHHcCCCccchhhhhhhcchHHHHhhhhcccccccccchhhccCCCCeEEEEeCCCCC---
Confidence 1110 23211 0 0 000 000 11124467777777765432
Q ss_pred cccccccchhhccHHHHHHHHHHHHHHcCCccccccCC-------------------CC---hHHHHhhcCCCCCceEEE
Q psy144 169 EGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPL-------------------NA---GPALRTLLDRPGNEKLAL 226 (254)
Q Consensus 169 ~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~-------------------~~---~~~v~~~Lglp~~~~~~~ 226 (254)
.-.++.+|.++|.+||.|+++||++|+++++ .. ...++++||++.+..+.+
T Consensus 623 -------~~d~lraGrAlqRvwL~AT~~GLA~~Pls~v~l~~r~~~~~~~ls~~~~~el~~lr~~l~~llg~~~~~~pq~ 695 (722)
T PRK07877 623 -------LTDYARGGSAMEAVWIAAQQLGLAVQPVSPVFLYARNRGELEGLSPEFADELGRLQKRFRELVGIGADEAEVL 695 (722)
T ss_pred -------HHHHHHHHHHHHHHHHHHHhcchhhCCccchhhhccccccccccccchhhhHHHHHHHHHHHhCCCCCCceEE
Confidence 2457899999999999999999999999875 10 245678889888889999
Q ss_pred EEeeccCCCCCCCCCCCCCCcccceEe
Q psy144 227 LLPIGYPALDCTVPNLKRKDIEDIIVE 253 (254)
Q Consensus 227 ~l~vGyp~~~~~~p~~~Rkpl~ei~~~ 253 (254)
++.+||+... .+..+|+|+++++..
T Consensus 696 l~RlG~a~~~--~~~SpRRpv~evL~~ 720 (722)
T PRK07877 696 LFRLSHAPPP--SVRSRRRPLREVLEI 720 (722)
T ss_pred EEEcccCCCC--CCCCCCCCHHHhccC
Confidence 9999998763 245789999998753
No 33
>PRK07877 hypothetical protein; Provisional
Probab=99.03 E-value=1.3e-09 Score=106.18 Aligned_cols=99 Identities=17% Similarity=0.125 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccccccchhhhhhHHhhhhcCCC
Q psy144 75 AVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAP 154 (254)
Q Consensus 75 ~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ap 154 (254)
..+.++++.|+++|..|||++|+|||+|+++.+.-
T Consensus 371 ~~~~~~l~~iv~aa~~APS~~N~QPW~~~v~~~~i--------------------------------------------- 405 (722)
T PRK07877 371 ALPQDALEIVAAAAIRAPSGGNVQPWHIEADQDRL--------------------------------------------- 405 (722)
T ss_pred CCCHHHHHHHHHHHHhCcCcCCCCCeEEEEECCee---------------------------------------------
Confidence 34889999999999999999999999999976540
Q ss_pred eEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcCCCCCceEEEEEeeccCC
Q psy144 155 YLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPA 234 (254)
Q Consensus 155 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp~~~~~~~~l~vGyp~ 234 (254)
.++.+..+..+. ....+-..++||+|++|+.+||.++|+++||...- .+.+..+++.+.+|+..
T Consensus 406 ---~l~~D~~r~l~~--D~~~r~~~iS~GAAleNL~LAA~a~Gl~~~~~~~p-----------~~~~~~l~a~i~l~~~~ 469 (722)
T PRK07877 406 ---TIRLAPEHTSAM--DVGYRGSAVAVGAALFNARVAAAAHGLLGPVEFFP-----------GDEGSPLRATLRFGRGD 469 (722)
T ss_pred ---EEEeccccccCC--CCCcchHHHHHHHHHHHHHHHHHHCCCCeeEEECC-----------CCCCccceEEEeccCCC
Confidence 000111110000 00112345799999999999999999999995421 22344667888888765
No 34
>PRK14851 hypothetical protein; Provisional
Probab=98.69 E-value=4e-07 Score=88.62 Aligned_cols=180 Identities=13% Similarity=0.165 Sum_probs=119.2
Q ss_pred HHHHHHHHHhccccC-CCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhh-----h
Q psy144 55 SEEFYQLMNARRTVR-FFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYD-----K 128 (254)
Q Consensus 55 ~~~~~e~i~~RRSvR-~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~-----~ 128 (254)
...+++.|..|||.| -|+++||+.+++..|..+|.. .+..++.++++++.+..+.+++.....+.+. .
T Consensus 424 ~~~L~~aI~~R~TnR~pf~~~pv~~~~l~~L~aaa~~------~~ga~L~~~~~~~~~~~la~lv~~a~~~r~~dp~~~~ 497 (679)
T PRK14851 424 KDPLADHIWKRCTNRKPYSKRPLPEWVLNDLKTRIRS------IPGAHLHFITGRDQLRKLAKVIYLADRIRTEHQGLHE 497 (679)
T ss_pred hHHHHHHHHHcccCcCCCCCCCCCHHHHHHHHHHhcc------cCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 357999999999999 499999999999999987762 1356788889977788888888765443221 1
Q ss_pred hhc--cccccc--------ch--------------hhhhhH-Hh-----------------hhhcCCCeEEEEEeecCCc
Q psy144 129 RMG--KEWTTD--------LR--------------PLKTSW-QK-----------------EYLTTAPYLVVVFKQTYGF 166 (254)
Q Consensus 129 ~~~--~~~~~~--------~~--------------~~~~~~-~~-----------------~~~~~Ap~~ii~~~~~~~~ 166 (254)
.+. -.|... +. .....| .. ..+..++.+++++.+.+.
T Consensus 498 El~~w~Rw~~~~~~~~~DGip~~aL~~~~~~~~~~~~~r~~~~~~fl~~~~~g~~~~~~~~~~~~~s~a~~ll~t~~d~- 576 (679)
T PRK14851 498 HFTSMIRFNMKEALQKRDGFPLKNLEAGVAGEAFLRLTRPWPVMNIANKIGLGRLVALHSYQGILESSGAALVVVDGFE- 576 (679)
T ss_pred HHHHHhccCcccccccCCCcChhhccccccchhhhhhhcCcchhhhhhcccccccccccccccccCCCcEEEEECCCCC-
Confidence 100 011100 00 000000 00 012234444444443321
Q ss_pred cccccccccchhhccHHHHHHHHHHHHHHcCCccccccCC---C-C--------------------hHHHHhhcCCC--C
Q psy144 167 KEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPL---N-A--------------------GPALRTLLDRP--G 220 (254)
Q Consensus 167 ~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~---~-~--------------------~~~v~~~Lglp--~ 220 (254)
...++.+|-++|.+||.|+++||++|++++. . . ...++.+++.+ +
T Consensus 577 ---------~~d~lraGrAlqRvwL~AT~~GLA~~Pls~~~l~~~r~~~~~~~~ls~~~~~~l~~l~~~~~~l~~~~~~~ 647 (679)
T PRK14851 577 ---------TRDFLLGGQALERIWLTLEHHGLQMQPMTAVTLFWLRWLLEGPSSFSEKHRKLLERIWQDYKGLFASVDFE 647 (679)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHhccHhhCcccHHHHHhhhhccCCcccCCHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 2357899999999999999999999988753 1 0 13556667787 8
Q ss_pred CceEEEEEeeccCCCCCCCCCCCCCCcccceE
Q psy144 221 NEKLALLLPIGYPALDCTVPNLKRKDIEDIIV 252 (254)
Q Consensus 221 ~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~ 252 (254)
++..++++.+|+..... .+..|+|+++++.
T Consensus 648 ~~~~v~~~R~~~a~~~~--~rs~R~~~~~~~~ 677 (679)
T PRK14851 648 KQGQVMLFRFGYGPGIK--HRTLRRGAGDFCV 677 (679)
T ss_pred CCceEEEEEeecCCCCC--ccccccccchhhc
Confidence 89999999999976643 3567999999854
No 35
>PRK14852 hypothetical protein; Provisional
Probab=98.57 E-value=2.2e-07 Score=92.38 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccccccchhhhhhHHhhhhcCCCe
Q psy144 76 VPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPY 155 (254)
Q Consensus 76 V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ap~ 155 (254)
++.+++..++++|..|||++|+|||+|.+-.+
T Consensus 611 ~~~~~l~~lv~aA~~APSgHNTQPWrf~~~~~------------------------------------------------ 642 (989)
T PRK14852 611 IPLETLHYVARAAMQAPSGDNVQPWRFVPHAT------------------------------------------------ 642 (989)
T ss_pred CCHHHHHHHHHHHHhCCCCCCCCCCEEEEeCC------------------------------------------------
Confidence 58999999999999999999999999976432
Q ss_pred EEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCcccc
Q psy144 156 LVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLT 202 (254)
Q Consensus 156 ~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~ 202 (254)
.|.++.+..+..+-. ...++...++||+|+.|+.+||.+.|+.+-+
T Consensus 643 ~L~L~~D~sR~lpv~-Dp~gR~l~IScGAALeNLrvAAaa~G~~~~V 688 (989)
T PRK14852 643 GLHIHLDRQADGSFF-DYRHVASLLACGAAVQNAVYASGSAGLDATL 688 (989)
T ss_pred EEEEEecCccCCCCc-CccchHHHHHHHHHHHHHHHHHHhCCCceeE
Confidence 133333433322211 1123356789999999999999999997643
No 36
>PRK14852 hypothetical protein; Provisional
Probab=98.43 E-value=9.1e-06 Score=81.17 Aligned_cols=178 Identities=13% Similarity=0.130 Sum_probs=119.5
Q ss_pred HHHHHHHhccccCC-CCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhh-----hhh
Q psy144 57 EFYQLMNARRTVRF-FSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYD-----KRM 130 (254)
Q Consensus 57 ~~~e~i~~RRSvR~-F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~-----~~~ 130 (254)
.++++|..|||.|. |+++||+.++++.|..+|..-+ ..++.++.+++.+..|.+++.....+.+. ..+
T Consensus 715 ~L~~AI~~RrTnR~pf~~~pvp~~~l~~L~~aa~~e~------Ga~L~~v~~~~~r~~LA~lv~~Adrir~~Dp~~~~EL 788 (989)
T PRK14852 715 IMTAALWRRHTNRRMYAARPLPVEVCERIEHLVSEEQ------DATLLWATDAAQRKTLARAVYLADRVRVERRDMHEHL 788 (989)
T ss_pred HHHHHHHHcccCCCCCCCCCCCHHHHHHHHHHhhccC------CeEEEEeCCHHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 59999999999995 9999999999999998877321 45677888877788888888765443221 100
Q ss_pred c-----------------ccccc---------------cc--hhh------------h---------hhH---------H
Q psy144 131 G-----------------KEWTT---------------DL--RPL------------K---------TSW---------Q 146 (254)
Q Consensus 131 ~-----------------~~~~~---------------~~--~~~------------~---------~~~---------~ 146 (254)
. +.|.+ .+ +.+ . ..| .
T Consensus 789 ~~WiRw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~le~~~~~~~~l~~~r~~~vm~~L~~~g~G~~l~~~~ 868 (989)
T PRK14852 789 MRFIRFDGQAEQQGEVGQQGHTGQAGHHSHAGNGPYGDGLPLANLEAGLAGELYLRAVRPWRNMSIANALGLGRLMPLHG 868 (989)
T ss_pred HHHhCCCcchhhhccccccccccccccccccccCccCCCCccccccCCchhhHHHHhhCCHHHHHHHHhhCcchhHHHHH
Confidence 0 01211 01 000 0 000 0
Q ss_pred hhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCC--C----------------
Q psy144 147 KEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLN--A---------------- 208 (254)
Q Consensus 147 ~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~--~---------------- 208 (254)
...+..++.+.+++.+.+. ....+..|.++|.+|+.|+.+||+..+++++. .
T Consensus 869 ~~~v~~Ssai~li~~~g~s----------~~dy~rgG~a~ervWl~A~~lGLavqP~s~l~l~~~~~~~~~~~~~~~~~~ 938 (989)
T PRK14852 869 AMGVLRSGGIGLLLANGET----------ETDIARAGMAWQRAWCALEHMGYAMQPLAALPLLHLRLAMGDPQTLDTAHQ 938 (989)
T ss_pred HHHHhcccceEEEecCCCC----------HHHHHHHhHHHHHHHHHHHhCCcccCccchHHHHHHhhhcCccccCCHHHH
Confidence 1113445666666544321 13456899999999999999999988775320 0
Q ss_pred ------hHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceE
Q psy144 209 ------GPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIV 252 (254)
Q Consensus 209 ------~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~ 252 (254)
...++.+++.+.++..++++.+|+..... ....|+|+++++.
T Consensus 939 ~~l~~l~~~~~~l~~~~~~~~~~~~~R~~~~~~~~--~~s~R~~~~~~~~ 986 (989)
T PRK14852 939 RLLEEAWTLLEQVLPHPKGRLPVMMFRAGVAAPIR--HGTFRRPLSDFLL 986 (989)
T ss_pred HHHHHHHHHHHHHcCCCCCcceeEEEEeecCCCCC--ccccccCcccccC
Confidence 24677888999999999999999976643 2467999998763
No 37
>PF14512 TM1586_NiRdase: Putative TM nitroreductase; PDB: 1VKW_A.
Probab=98.15 E-value=1.1e-06 Score=73.03 Aligned_cols=43 Identities=28% Similarity=0.628 Sum_probs=22.9
Q ss_pred hccccCCCCC---CCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeC
Q psy144 64 ARRTVRFFSD---EAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVED 107 (254)
Q Consensus 64 ~RRSvR~F~~---~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~ 107 (254)
+|++++.|.. +.+| +.+.+++++|+.|||+.|+|||+|++..+
T Consensus 114 krk~~~~~~~~~~~e~p-~~~~~~leAarLAPSA~N~Qpw~f~~~~~ 159 (206)
T PF14512_consen 114 KRKPISEFKRKDIEEIP-EWFKKGLEAARLAPSAMNQQPWRFVVNDG 159 (206)
T ss_dssp ----HHHHBSS-GGGS--HHHHHHHHHHHTS--GGG----EEEE-SS
T ss_pred ccCcHHHHhhcccccCC-HHHHHHHHHHHhCcchhhcCCeEEEEECC
Confidence 5666555432 3455 46778999999999999999999987654
No 38
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=91.95 E-value=2.1 Score=33.74 Aligned_cols=130 Identities=17% Similarity=0.202 Sum_probs=74.3
Q ss_pred HHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccccccchhhhhhHHhhhhcCCCeEEEEEeec
Q psy144 84 IIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQT 163 (254)
Q Consensus 84 il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~ 163 (254)
++.+||+||-+........++|++++ +++|+..+++-.+. .++.-+++ -.+.+.++..++++-...
T Consensus 17 m~~aARTAPK~kGiDdIv~~lve~Ee-~e~iA~rMEelae~-----------k~~~Flkr--DA~~vR~s~a~vLIG~Ka 82 (182)
T COG4739 17 MAEAARTAPKSKGIDDIVIVLVEGEE-MEKIAARMEELAEE-----------KDKDFLKR--DAENVRKSQAIVLIGVKA 82 (182)
T ss_pred HHHHhhcCCccCCccceEEEEeCHHH-HHHHHHHHHHHHhc-----------cchHHHHh--hHHHhhhcCceEEEEecc
Confidence 45789999999999999999999876 67777765432111 01110111 123456677777765544
Q ss_pred CCccc-----cc---------ccc--------ccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcCC-CC
Q psy144 164 YGFKE-----EG---------KRK--------KHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDR-PG 220 (254)
Q Consensus 164 ~~~~~-----~~---------~~~--------~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lgl-p~ 220 (254)
.+... -| +.+ .-.+-.+|.|||++.....+..+++..-.+-.+ -...+.||+ +.
T Consensus 83 sg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~iDLGIAlGsA~~~a~dl~iDnRiMYsi---G~AAr~~gmiDA 159 (182)
T COG4739 83 SGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYIDLGIALGSAAKVAKDLCIDNRIMYSI---GAAARKLGMIDA 159 (182)
T ss_pred CCccccccccccchhHHHHHHHHhhhhhccCcchhhhhhhhhhhhhHHHHHHHHhccchhHHHHH---HHHHHHhCCccc
Confidence 33210 01 000 012446789999998888888888776443111 233445564 44
Q ss_pred CceEEEEEeecc
Q psy144 221 NEKLALLLPIGY 232 (254)
Q Consensus 221 ~~~~~~~l~vGy 232 (254)
+ +++.+++--
T Consensus 160 D--VvmGiPLS~ 169 (182)
T COG4739 160 D--VVMGIPLSA 169 (182)
T ss_pred c--eeecccccc
Confidence 3 555555543
No 39
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=73.06 E-value=5.5 Score=28.50 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcccc-------CCCCCC---CCCHHHHHHHHHHhccCCCCCCCCCeEEEEE
Q psy144 55 SEEFYQLMNARRTV-------RFFSDE---AVPKEIIHNIIKTAGTSPSGAHTEPWTFVIV 105 (254)
Q Consensus 55 ~~~~~e~i~~RRSv-------R~F~~~---~V~~e~i~~il~~A~~APS~~n~qpw~f~vv 105 (254)
-++++.+|+++--. |...++ -++.|++.-+++.++.-||..+.-||+.+|.
T Consensus 30 ~kdLl~lmr~~f~~~dIaLNYrD~EGDLIRllddeDv~LMV~~~r~~~~~k~~fPWeLhvT 90 (92)
T cd06399 30 LKDLLELTRREFQREDIALNYRDAEGDLIRLLSDEDVALMVRQSRGLPSQKRLFPWKLHIT 90 (92)
T ss_pred HHHHHHHHHHHhchhheeeeeecCCCCEEEEcchhhHHHHHHHHhcCCCcccccceeEEEe
Confidence 35666666554332 233333 3599999999999999999999999999875
No 40
>PHA01753 Holliday junction resolvase
Probab=32.27 E-value=35 Score=26.05 Aligned_cols=34 Identities=9% Similarity=-0.009 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHhccCCC-C---------CCCCCeEEEEEeCH
Q psy144 75 AVPKEIIHNIIKTAGTSPS-G---------AHTEPWTFVIVEDK 108 (254)
Q Consensus 75 ~V~~e~i~~il~~A~~APS-~---------~n~qpw~f~vv~~~ 108 (254)
.|+.+++++|+.+|..-.- + .+..+|+|+.+++.
T Consensus 63 ~V~~~Ki~kLi~fa~~fg~~~~~p~i~vkf~~~~~w~~~~~~~~ 106 (121)
T PHA01753 63 TVDKFQIEKLFRFCEIFSFCECKPLVMVRYKKYKQVIVYELTQD 106 (121)
T ss_pred ecCHHHHHHHHHHHHHhCccCCeEEEEEEecCccceEEEEeecc
Confidence 8999999999999986541 1 24779999999875
No 41
>PF04650 YSIRK_signal: YSIRK type signal peptide; InterPro: IPR005877 Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. ; GO: 0016020 membrane
Probab=26.89 E-value=18 Score=19.98 Aligned_cols=11 Identities=27% Similarity=0.329 Sum_probs=7.8
Q ss_pred HhccccCCCCC
Q psy144 63 NARRTVRFFSD 73 (254)
Q Consensus 63 ~~RRSvR~F~~ 73 (254)
++|.|+|+|+-
T Consensus 4 ~~rysIRK~sv 14 (27)
T PF04650_consen 4 KQRYSIRKLSV 14 (27)
T ss_pred ccEEeEEcccc
Confidence 35788888874
No 42
>PF09918 DUF2148: Uncharacterized protein containing a ferredoxin domain (DUF2148); InterPro: IPR019224 This domain, found in various hypothetical bacterial and archaeal proteins containing a ferredoxin domain, has no known function.
Probab=21.37 E-value=2.8e+02 Score=18.94 Aligned_cols=56 Identities=9% Similarity=0.129 Sum_probs=39.2
Q ss_pred hhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcCCCCCceEEEEEeeccCCCC
Q psy144 177 YHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALD 236 (254)
Q Consensus 177 ~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp~~~~~~~~l~vGyp~~~ 236 (254)
+..+|.|||++.....|..+++..-.+- .--.....||+= +..+++.+++.-..+.
T Consensus 9 ~~~~DLGIAlgSAv~~A~~~~vDnRvm~---s~G~aA~~lg~~-d~~~v~gIPls~sgKn 64 (69)
T PF09918_consen 9 FRAIDLGIALGSAVKTASDLNVDNRVMY---SAGAAARSLGLI-DADVVYGIPLSVSGKN 64 (69)
T ss_pred EeccchhHHHHHHHHHHHHcCCccceee---HHHHHHHHcCCc-cccEEEEEEeeecCCC
Confidence 4467999999999999999998764331 113556667765 4457888888765443
No 43
>PF03007 WES_acyltransf: Wax ester synthase-like Acyl-CoA acyltransferase domain; InterPro: IPR004255 This entry represents the N terminus (approximately 170 residues) of a number of hypothetical plant proteins. O-acyltransferase WSD1 is a bifunctional wax ester synthase/diacylglycerol acyltransferase, which is involved in cuticular wax biosynthesis [].; GO: 0004144 diacylglycerol O-acyltransferase activity
Probab=21.01 E-value=1.9e+02 Score=24.81 Aligned_cols=34 Identities=9% Similarity=0.292 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCH
Q psy144 75 AVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDK 108 (254)
Q Consensus 75 ~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~ 108 (254)
|-+.+++.+++......|=-.+..+|++++|++-
T Consensus 91 pg~~~~l~~~v~~l~~~pLd~~rPlWe~~li~g~ 124 (263)
T PF03007_consen 91 PGDRAELQALVSRLASTPLDRSRPLWEVHLIEGL 124 (263)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCcEEEEEecC
Confidence 4467889999998888999999999999999873
Done!