Query psy144
Match_columns 254
No_of_seqs 211 out of 1216
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 18:53:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gb5_A IYD-1, iodotyrosine deh 100.0 3.2E-50 1.1E-54 346.8 19.1 232 22-253 21-252 (259)
2 3ge5_A Putative NAD(P)H:FMN ox 100.0 1.5E-39 5.2E-44 270.0 11.8 168 56-254 25-196 (198)
3 3of4_A Nitroreductase; structu 100.0 1.5E-39 5E-44 272.2 11.2 172 56-254 2-209 (209)
4 4eo3_A Bacterioferritin comigr 100.0 3.2E-39 1.1E-43 286.7 13.9 173 53-253 139-320 (322)
5 3gag_A Putative NADH dehydroge 100.0 1.6E-38 5.6E-43 264.5 17.0 170 56-254 4-205 (206)
6 3ge6_A Nitroreductase; structu 100.0 5.8E-39 2E-43 268.5 13.4 173 54-254 6-212 (212)
7 3g14_A Nitroreductase family p 100.0 7.2E-39 2.5E-43 264.7 13.2 171 56-253 2-175 (193)
8 3gbh_A NAD(P)H-flavin oxidored 100.0 1.3E-38 4.5E-43 266.6 14.5 173 54-254 7-213 (213)
9 3eo8_A BLUB-like flavoprotein; 100.0 3.6E-38 1.2E-42 264.6 16.3 196 56-254 2-218 (219)
10 3h4o_A Nitroreductase family p 100.0 3.6E-38 1.2E-42 260.4 15.8 169 53-253 17-188 (191)
11 3k6h_A Nitroreductase family p 100.0 5.1E-38 1.8E-42 260.3 16.7 184 55-254 8-194 (197)
12 4dn2_A Nitroreductase; structu 100.0 2.3E-38 7.7E-43 264.8 14.3 183 54-253 21-203 (208)
13 3qdl_A Oxygen-insensitive NADP 100.0 2.7E-38 9.3E-43 264.4 12.7 171 56-254 7-210 (210)
14 3gr3_A Nitroreductase; structu 100.0 7.2E-38 2.5E-42 265.2 15.3 191 54-254 5-226 (230)
15 1nox_A NADH oxidase; flavoenzy 100.0 2.1E-38 7.3E-43 263.2 11.5 172 54-254 6-205 (205)
16 3m5k_A Putative NADH dehydroge 100.0 2.3E-37 7.8E-42 251.2 17.2 162 55-253 5-169 (172)
17 2b67_A COG0778: nitroreductase 100.0 4.8E-38 1.6E-42 261.1 13.4 171 55-254 3-204 (204)
18 3e39_A Putative nitroreductase 100.0 1.9E-38 6.5E-43 258.8 10.7 165 53-253 3-171 (178)
19 3bem_A Putative NAD(P)H nitror 100.0 1.3E-37 4.3E-42 261.6 15.8 171 55-254 13-218 (218)
20 3kwk_A Putative NADH dehydroge 100.0 1.9E-37 6.4E-42 252.4 16.3 162 54-253 8-172 (175)
21 2fre_A NAD(P)H-flavin oxidored 100.0 3.2E-38 1.1E-42 262.1 11.2 175 54-253 9-192 (200)
22 3ek3_A Nitroreductase; YP_2117 100.0 5.3E-37 1.8E-41 252.5 17.2 179 56-254 5-189 (190)
23 3gfa_A Putative nitroreductase 100.0 3.4E-37 1.2E-41 254.8 16.1 190 57-254 2-198 (198)
24 3pxv_A Nitroreductase; flavopr 100.0 4.8E-37 1.6E-41 252.6 16.8 178 56-254 4-188 (189)
25 3n2s_A NADPH-dependent nitro/f 100.0 8.6E-38 2.9E-42 268.2 12.8 170 56-253 2-184 (249)
26 2i7h_A Nitroreductase-like fam 100.0 3E-37 1E-41 253.5 15.5 181 54-254 6-187 (189)
27 1vfr_A NAD(P)H\:FMN oxidoreduc 100.0 2.2E-37 7.6E-42 259.3 15.0 177 56-254 3-218 (218)
28 2h0u_A NADPH-flavin oxidoreduc 100.0 2.2E-37 7.7E-42 259.2 14.6 172 55-254 3-216 (217)
29 2hay_A Putative NAD(P)H-flavin 100.0 4.1E-37 1.4E-41 259.0 15.6 173 55-254 9-223 (224)
30 3bm1_A Protein YDJA, nitroredu 100.0 8.7E-37 3E-41 249.0 17.0 182 56-254 1-183 (183)
31 3e10_A Putative NADH oxidase; 100.0 5.4E-37 1.8E-41 247.9 15.6 161 59-253 2-165 (168)
32 3eof_A Putative oxidoreductase 100.0 2.5E-37 8.5E-42 265.1 14.0 168 58-253 2-180 (248)
33 2isk_A BLUB; oxidoreductase, f 100.0 2.2E-36 7.5E-41 255.9 16.6 193 55-253 23-224 (230)
34 1icr_A Oxygen-insensitive NAD( 100.0 5.3E-37 1.8E-41 256.6 11.5 177 56-254 1-217 (217)
35 2wzv_A NFNB protein; nitroredu 100.0 5.3E-36 1.8E-40 253.6 15.9 190 54-254 15-234 (235)
36 1zch_A Hypothetical oxidoreduc 100.0 1.3E-36 4.5E-41 261.6 10.7 170 56-253 2-184 (255)
37 1f5v_A Oxygen-insensitive NADP 100.0 1.9E-36 6.5E-41 258.4 11.5 170 56-253 2-178 (240)
38 1bkj_A NADPH-flavin oxidoreduc 100.0 2.3E-36 7.9E-41 257.9 11.8 170 56-253 2-178 (240)
39 2ifa_A Hypothetical protein SM 100.0 7.8E-36 2.7E-40 248.4 13.9 185 56-253 2-197 (208)
40 1ywq_A Nitroreductase family p 100.0 6.4E-36 2.2E-40 247.0 11.8 189 53-254 3-200 (200)
41 2wqf_A Copper induced nitrored 100.0 2.8E-35 9.6E-40 243.3 13.3 187 57-254 2-201 (202)
42 2r01_A Nitroreductase family p 100.0 6.5E-36 2.2E-40 250.2 7.7 155 55-237 12-168 (210)
43 3hoi_A FMN-dependent nitroredu 100.0 1.6E-34 5.4E-39 238.0 10.0 166 54-234 15-193 (193)
44 3hj9_A Oxidoreductase; structu 100.0 3E-34 1E-38 242.2 7.5 183 33-237 23-218 (223)
45 3eo7_A Putative nitroreductase 100.0 1.9E-29 6.5E-34 236.5 11.0 194 33-234 299-511 (511)
46 1vkw_A Putative nitroreductase 99.9 2.2E-22 7.5E-27 169.0 7.1 121 55-250 12-133 (218)
47 3eo7_A Putative nitroreductase 99.8 1.2E-21 4.2E-26 183.5 6.0 190 27-235 31-242 (511)
48 2ymv_A ACG nitroreductase; oxi 99.8 1.9E-19 6.5E-24 159.9 14.7 177 56-253 112-326 (330)
49 2ymv_A ACG nitroreductase; oxi 99.4 1.6E-12 5.4E-17 115.3 8.7 85 71-204 2-86 (330)
50 1vkw_A Putative nitroreductase 99.3 4.1E-13 1.4E-17 112.4 0.6 79 75-217 139-217 (218)
51 1oey_J P40-PHOX, neutrophil cy 64.6 5.7 0.0002 28.3 3.2 54 55-108 35-98 (107)
No 1
>3gb5_A IYD-1, iodotyrosine dehalogenase 1; iodide salvage, flavoprotein, FMN, membrane, NADP, oxidoreductase, transmembrane; HET: FMN; 2.00A {Mus musculus} PDB: 3gfd_A* 3gh8_A* 3tnz_A* 3to0_A*
Probab=100.00 E-value=3.2e-50 Score=346.75 Aligned_cols=232 Identities=59% Similarity=1.024 Sum_probs=170.7
Q ss_pred CcccCCCCCCCCCCCCCccCCCccCchhHhhhcHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeE
Q psy144 22 TDEDDEFAPALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWT 101 (254)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~ 101 (254)
.+++.++|++.+++++|+||...++++.++...+|+|+++|++|||+|+|++++|+.++|++||++|++|||++|+|||+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~RRSvR~f~~~~v~~e~l~~il~aa~~APS~~n~Qpw~ 100 (259)
T 3gb5_A 21 VEEDAEEWQEAEESVEHIPFSHTRYPEQEMRMRSQEFYELLNKRRSVRFISSEHVPMEVIENVIKAAGTAPSGAHTEPWT 100 (259)
T ss_dssp ---------------CCCCCCCCCCCHHHHHHHHHHHHHHHHTCCCCSCBCCCCCCHHHHHHHHHHHTTSCCGGGCCCEE
T ss_pred cccccccccCCccccCcccccCCCCChhhhhhhhHHHHHHHHHCcchhhcCCCCCCHHHHHHHHHHHHHCCCcCCCCCeE
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccccccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhcc
Q psy144 102 FVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMS 181 (254)
Q Consensus 102 f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~ 181 (254)
|+||++++.+++|.+++.....++|..+++..|..++.++..+|.+.++.+||++|+++++..+...++......|..+|
T Consensus 101 fivv~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~AP~lIvv~~~~~~~~~~g~~~~~~~~~~d 180 (259)
T 3gb5_A 101 FVVVKDPDMKHKIREIIEEEEEINYMKRMGKRWVTDLKKLRTNWIKEYLDTAPVLILIFKQVHGFAANGKKKVHYYNEIS 180 (259)
T ss_dssp EEEECCHHHHHHHHHHHHHTCCC----------------------CTHHHHSSEEEEEEEEC-------------CHHHH
T ss_pred EEEEeCHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHHHHHHhhHHhcCCCEEEEEEEecccccccCcccchhHHHHH
Confidence 99999999999999988665545566667777877777766667778889999999999886543333333334567889
Q ss_pred HHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEe
Q psy144 182 VSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE 253 (254)
Q Consensus 182 ~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~ 253 (254)
+|+|+|||+|+|+++||||||+++++..+.++++||+|+++.++++|+||||++....|..+|||++|+++-
T Consensus 181 agiA~~nllLAA~alGLGs~~~g~~~~~~~vr~~LglPe~~~~v~~iaiGyp~e~~~~p~~~Rkpleei~~~ 252 (259)
T 3gb5_A 181 VSIACGLLLAALQNAGLVTVTTTPLNCGPRLRVLLGRPSHEKLLVLLPVGYPSRDATVPDLKRKALDQIMVT 252 (259)
T ss_dssp HHHHHHHHHHHHHHTTCBCCCBCCGGGHHHHHHHTTCCTTEEEEEEEEEBCBCTTCCCCCCCCCCGGGTCCC
T ss_pred HHHHHHHHHHHHHHCCCeEEEecCcCcHHHHHHhcCcCCCCEEEEEEEecCcCCCCCCCCCCCCCHHHHHHH
Confidence 999999999999999999999999876689999999999999999999999999887787899999999864
No 2
>3ge5_A Putative NAD(P)H:FMN oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: FMN UNL; 1.70A {Porphyromonas gingivalis W83}
Probab=100.00 E-value=1.5e-39 Score=270.03 Aligned_cols=168 Identities=20% Similarity=0.357 Sum_probs=143.8
Q ss_pred HHH---HHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcc
Q psy144 56 EEF---YQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGK 132 (254)
Q Consensus 56 ~~~---~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~ 132 (254)
|+| .++|++|||+|+|++++|+.++|++|+++|++|||++|+|||+|+||++++.+++|.+..
T Consensus 25 M~~~~l~~~i~~RrSvR~f~~~~V~~e~l~~il~aa~~APS~~n~Qpwrf~vv~~~e~~~~l~~~~-------------- 90 (198)
T 3ge5_A 25 QDFRLIEDFFRTRRSVRKFIDRPVEEEKLMAILEAGRIAPSAHNYQPWHFLVVREEEGRKRLAPCS-------------- 90 (198)
T ss_dssp TTCCHHHHTTTTCCCCCCBCSCCCCHHHHHHHHHHHHHCCCGGGCCCEEEEEECSHHHHHHHGGGC--------------
T ss_pred ccHHHHHHHHHhCcccccCCCCCCCHHHHHHHHHHHHHCCCcCCCCCEEEEEEECHHHHHHHHHHh--------------
Confidence 677 999999999999999999999999999999999999999999999999988777765421
Q ss_pred cccccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHH
Q psy144 133 EWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPAL 212 (254)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v 212 (254)
.+.++.+||++|+++.+....... ....+..+|+|+++||++|+|+++||||||+|+++. +++
T Consensus 91 -------------~~~~~~~Ap~~ivv~~~~~~~~~~---~~~~~~~~d~g~a~~nl~LaA~~lGLgsc~~~~~~~-~~v 153 (198)
T 3ge5_A 91 -------------QQPWFPGAPIYIITLGDHQRAWKR---GAGDSVDIDTSIAMTYMMLEAHSLGLGCTWVCAFDQ-ALC 153 (198)
T ss_dssp -------------CCTTGGGCSEEEEEEEETTTSCEE---TTEESHHHHHHHHHHHHHHHHHHTTCEEEEECCSCH-HHH
T ss_pred -------------CcccccCCCEEEEEEEeccccccc---ccccchHHHHHHHHHHHHHHHHHCCCCEEEECccCH-HHH
Confidence 135578999999999886532111 123456789999999999999999999999999875 899
Q ss_pred HhhcCCCCCceEEEEEeeccCCCCCCCCCC-CCCCcccceEeC
Q psy144 213 RTLLDRPGNEKLALLLPIGYPALDCTVPNL-KRKDIEDIIVEF 254 (254)
Q Consensus 213 ~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~-~Rkpl~ei~~~~ 254 (254)
+++||+|+++.++++++||||++....+.. +|+|++|+++|.
T Consensus 154 ~~~L~lp~~~~~~~~i~iGyp~~~~~~~~~~~R~pleevv~~~ 196 (198)
T 3ge5_A 154 SEIFDIPSHMTPVSILALGYGDPTVPPREAFNRKTIEEVVSFE 196 (198)
T ss_dssp HHHTTCCTTEEEEEEEEEECBCTTSCCSSCCCCCCHHHHEEES
T ss_pred HHHhCcCCCceEEEEEEEeCcCCCCCCCCCCCCCCHHHeEEEe
Confidence 999999999999999999999986543344 799999999874
No 3
>3of4_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; HET: FMN UNL FAD; 1.90A {Idiomarina loihiensis} SCOP: d.90.1.0
Probab=100.00 E-value=1.5e-39 Score=272.19 Aligned_cols=172 Identities=13% Similarity=0.205 Sum_probs=144.2
Q ss_pred HHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccc
Q psy144 56 EEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (254)
|++.++|++|||+|+|++++|+.++|++|+++|++|||++|+|||+|+||++++.+++|.++.
T Consensus 2 M~~~~~i~~RrS~R~f~~~~v~~e~l~~il~~a~~aPs~~n~qpw~~~vv~~~~~~~~l~~~~----------------- 64 (209)
T 3of4_A 2 MYLEKLQQWRYATADFSGAHITDDVLDKLLNTTRLTASSYGLQPYCTLVIRNKGLREQLVNHS----------------- 64 (209)
T ss_dssp CHHHHHHHHCCBCSSBCSCCCCHHHHHHHHHHHHTCCCGGGCCCEEEEEECCHHHHHHHHHTT-----------------
T ss_pred CcHHHHHHHhhhHHhcCCCCCCHHHHHHHHHHHHHCcCcCCCCCeEEEEEcCHHHHHHHHHHh-----------------
Confidence 689999999999999999999999999999999999999999999999999998888887743
Q ss_pred ccchhhhhhHHhhhhcCCCeEEEEEeecCCccc---cc--------c----------------------ccccchhhccH
Q psy144 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKE---EG--------K----------------------RKKHYYHEMSV 182 (254)
Q Consensus 136 ~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~---~~--------~----------------------~~~~~~~~~~~ 182 (254)
+.+..+.+||++|+++.+...... .. . .....++..|+
T Consensus 65 ---------~~~~~~~~Ap~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 135 (209)
T 3of4_A 65 ---------FGQQKVADSSALVIFAAKTGAVADIVDPYISELSQQRQLTNEEAENTRNYFTQKLQAMSAATRKEWAVRQA 135 (209)
T ss_dssp ---------TTCTHHHHSSEEEEEEEECSCTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred ---------cCCcccCCCCeEEEEEecccccHhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 114457789999999887653210 00 0 01113456899
Q ss_pred HHHHHHHHHHHHHcCCccccccCCCChHHHHhhcCCCC-CceEEEEEeeccCCCCCC--CCCCCCCCcccceEeC
Q psy144 183 SLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPG-NEKLALLLPIGYPALDCT--VPNLKRKDIEDIIVEF 254 (254)
Q Consensus 183 g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp~-~~~~~~~l~vGyp~~~~~--~p~~~Rkpl~ei~~~~ 254 (254)
|+++|||+|+|+++||||||+++++. +.++++||+|+ ++.++++++||||+++.. .+..+|+|++|+++|+
T Consensus 136 g~a~~nl~LaA~~~Glgsc~i~g~~~-~~v~~~L~lp~~~~~~~~~ialGyp~~~~~~~~~~~~R~p~~eiv~~~ 209 (209)
T 3of4_A 136 YIGLGTFLLAAAELEVDSCPMEGIEH-DAYDNILSLKDLGLSTVFACPVGYRSEADTTQFQKKVRQPLSRFKVVL 209 (209)
T ss_dssp HHHHHHHHHHHHHTTCEECCBCCSCH-HHHHHHTTHHHHTEEEEEEEEEECBCTTCGGGGSCCCCCCHHHHEEEC
T ss_pred HHHHHHHHHHHHHcCCCeeeecccCH-HHHHHHhCCCCCCceEEEEEEeecCCccccccCCCCCCCCHHHheecC
Confidence 99999999999999999999999975 89999999998 899999999999997642 2346799999999985
No 4
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-39 Score=286.67 Aligned_cols=173 Identities=23% Similarity=0.387 Sum_probs=145.9
Q ss_pred hcHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcc
Q psy144 53 QRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGK 132 (254)
Q Consensus 53 ~~~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~ 132 (254)
...+++.++|++|||+|+|+++|||+|+|++||++|++|||++|+|||+|+||++++.+++|.+.+.
T Consensus 139 ~~~~~~~~~I~~RRSiR~F~~~~V~~e~l~~ileaA~~APS~~N~Qpwrfivv~d~e~~~~l~~~~~------------- 205 (322)
T 4eo3_A 139 EEDLSLNKHIEWRRARRALKKDRVPREELELLIKAAHLAPSCMNNQPWRFVVVDEEELLKKIHEALP------------- 205 (322)
T ss_dssp HHHTSCCHHHHHCCCCCCBCCCCCCHHHHHHHHHHHHTSCCGGGCCCCEEEEECCHHHHHHHHTTSC-------------
T ss_pred hhhhHHHHHHHhhhccCCcCccccCHHHHHHHHHHHHhCcCcCCCcCeEEEEEeCHHHHHHHHHhhh-------------
Confidence 3457788999999999999999999999999999999999999999999999999998888876431
Q ss_pred cccccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHH
Q psy144 133 EWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPAL 212 (254)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v 212 (254)
+.+.++.+||++|+++.+....... .....+...|+|+|+|||+|+|+++||||||+++++. +++
T Consensus 206 ------------~~~~~~~~Ap~~ivv~~~~~~~~~~--~~~~~~~~~d~g~a~~nl~LaA~~~GLgs~~~~~~~~-~~v 270 (322)
T 4eo3_A 206 ------------GGNYWMKNAPALIAVHSKKDFDCAL--PDNRDYFLFDTGLAVGNLLVQATQMGLVAHPVAGYDP-VKV 270 (322)
T ss_dssp ------------GGGGGGGGCSEEEEEEECGGGSCEE--TTTEECHHHHHHHHHHHHHHHHHHTTCEEEEECCSCH-HHH
T ss_pred ------------hccccccCCCEEEEEEeeccccccc--cccccchHHHHHHHHHHHHHHHHHcCcCEEEcCccCH-HHH
Confidence 1134578999999998875422111 1122355779999999999999999999999999875 899
Q ss_pred HhhcCCCCCceEEEEEeeccCCCCCCCC---------CCCCCCcccceEe
Q psy144 213 RTLLDRPGNEKLALLLPIGYPALDCTVP---------NLKRKDIEDIIVE 253 (254)
Q Consensus 213 ~~~Lglp~~~~~~~~l~vGyp~~~~~~p---------~~~Rkpl~ei~~~ 253 (254)
+++||||+++.++++++||||+++...+ ...|+|++||++|
T Consensus 271 ~~~L~lP~~~~~~~~ialGyp~e~~~~~~~~~~~~~~~~~Rkpl~eiv~~ 320 (322)
T 4eo3_A 271 KEILKIPEDHVLITLIAVGYLGDESELSEKHRELERSERVRKELSEIVRW 320 (322)
T ss_dssp HHHHTCCTTSEEEEEEEEECBCCGGGSCHHHHHHHTCCCCCCCGGGTEEE
T ss_pred HHHcCcCCCCEEEEEEEEeCcCCccCCChhhhhcccCCCCCCCHHHeeEe
Confidence 9999999999999999999999866433 3579999999997
No 5
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} SCOP: d.90.1.0
Probab=100.00 E-value=1.6e-38 Score=264.55 Aligned_cols=170 Identities=20% Similarity=0.432 Sum_probs=143.0
Q ss_pred HHHHHHHHhccccCCCCC-CCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccc
Q psy144 56 EEFYQLMNARRTVRFFSD-EAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEW 134 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~-~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 134 (254)
|+|.++|++|||+|+|++ ++||.++|++||++|++|||++|+|||+|+||++++.+++|.+++.
T Consensus 4 ~~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~aa~~APS~~n~Qpw~f~vv~~~~~~~~l~~~~~--------------- 68 (206)
T 3gag_A 4 NDYLNFLDGRVSVRRFDPDAVLPNDLIKDMLEHASYAPSGNNFQPWRVVVVKNKNKQEDLKKLAA--------------- 68 (206)
T ss_dssp HHHHHHHHTCCBCCCBCTTCCCCHHHHHHHHHHHTTSCCGGGCCCEEEEEECCHHHHHHHHHTTT---------------
T ss_pred HHHHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHHCCCCCCCCCeEEEEEcCHHHHHHHHHHhc---------------
Confidence 789999999999999996 7999999999999999999999999999999999988888877531
Q ss_pred cccchhhhhhHHhhhhcCCCeEEEEEeecCCcc-c--------cc----------------------cccccchhhccHH
Q psy144 135 TTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFK-E--------EG----------------------KRKKHYYHEMSVS 183 (254)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~-~--------~~----------------------~~~~~~~~~~~~g 183 (254)
.+..+.+||++|+++.+..... . .+ ......+...|+|
T Consensus 69 -----------~~~~~~~a~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g 137 (206)
T 3gag_A 69 -----------LQPQVATASAVFLLFGDENAYDLTWWQEFHVQKGIITKDEAAARAERIRQYFDLHPEDKETQGLRLDVG 137 (206)
T ss_dssp -----------TCTHHHHSSEEEEEEEEGGGCCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGSHHHHHHHHH
T ss_pred -----------CCccccCCCEEEEEEecCCcccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 1345678999999988764321 0 00 0011125578999
Q ss_pred HHHHHHHHHHHHcCCccccccCCCChHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEeC
Q psy144 184 LACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254 (254)
Q Consensus 184 ~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~~ 254 (254)
+++|||+|+|+++||||||+++++. ++++++||+|+++.++++++||||+++.. ..+|+|++|+++|.
T Consensus 138 ~a~~nl~LaA~~~Glgsc~~~~~~~-~~v~~~L~lp~~~~~~~~i~lGy~~~~~~--~~~R~~~~e~v~~~ 205 (206)
T 3gag_A 138 LFAMNLMQVVRVYGYDSVPMRGVDF-DAIKTYLDMPNGWEPILMLPVGKALQAGN--PHVRKSVAEFAEII 205 (206)
T ss_dssp HHHHHHHHHHHHTTCEECCBCCSCH-HHHHHHTTCCTTEEEEEEEEEECBSSCCC--CCCCCCGGGTEEEE
T ss_pred HHHHHHHHHHHHcCCCeeeecccCH-HHHHHHhCcCCCcceEEEEEeeccCCCCC--CCCCCCHHHeeeec
Confidence 9999999999999999999999875 89999999999999999999999987643 35899999999873
No 6
>3ge6_A Nitroreductase; structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: FMN; 1.85A {Exiguobacterium sibiricum 255-15} SCOP: d.90.1.0
Probab=100.00 E-value=5.8e-39 Score=268.45 Aligned_cols=173 Identities=17% Similarity=0.273 Sum_probs=144.0
Q ss_pred cHHHHHHHHHhccccCCCCC-CCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcc
Q psy144 54 RSEEFYQLMNARRTVRFFSD-EAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGK 132 (254)
Q Consensus 54 ~~~~~~e~i~~RRSvR~F~~-~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~ 132 (254)
..|+|.++|++|||||+|++ +|||+++|++||++|++|||++|+|||+|+||++++.+++|.+++.
T Consensus 6 ~~~~~~~~i~~RrSvR~f~~~~~v~~e~l~~ileaa~~APS~~N~Qpw~f~vv~~~~~~~~l~~~~~------------- 72 (212)
T 3ge6_A 6 TATDFMEIVKGRRSIRNYDTNVKISKEEMTQILEEATLAPSSVNMQPWRFLVIDSEEGKATLAPLAK------------- 72 (212)
T ss_dssp CCCBHHHHHHTCCBCCCBCTTCCCCHHHHHHHHHHHTTSCCGGGCCCEEEEEECSHHHHHHHGGGST-------------
T ss_pred cHHHHHHHHHhhHhHHhcCCCCCCCHHHHHHHHHHHHHCcCcCCCCCEEEEEEeCHHHHHHHHhhcc-------------
Confidence 35789999999999999997 6999999999999999999999999999999999988888866420
Q ss_pred cccccchhhhhhHHhhhhcCCCeEEEEEeecCCcccc----------c----------------------cccccchhhc
Q psy144 133 EWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEE----------G----------------------KRKKHYYHEM 180 (254)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~----------~----------------------~~~~~~~~~~ 180 (254)
+.+..+.+||++|+++.+....... + ......+...
T Consensus 73 ------------~~~~~~~~a~~~iv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (212)
T 3ge6_A 73 ------------FNQVQVETSSAVIAVFGDMKAIDQLENIYDTAVEKGLMPQEVRDRQVPAIQGMYENVPASALKDSILI 140 (212)
T ss_dssp ------------TCHHHHHHSSEEEEEEEETTGGGGHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred ------------cCcccccCCCEEEEEEeCCchhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1245567899999998876432100 0 0001125568
Q ss_pred cHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcCC-CCCceEEEEEeeccCCCCCCCCCCCCCCcccceEeC
Q psy144 181 SVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDR-PGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254 (254)
Q Consensus 181 ~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lgl-p~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~~ 254 (254)
|+|+++|||+|+|+++||||||+++++. ++++++||+ |+++.++++++||||+++.. ..+|+|++|+++|.
T Consensus 141 d~g~a~~nl~LaA~~~Glgsc~i~~~~~-~~v~~~L~l~p~~~~~~~~ialGy~~~~~~--~~~R~~~~e~v~~~ 212 (212)
T 3ge6_A 141 DSGLVSMQLMLVARAHGYDTNPIGGYEK-DQIAEAFGMEKDRYVPVMLLSIGKAVDAGY--PSVRLPINDIADWK 212 (212)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCSCH-HHHHHHTTCCSSSEEEEEEEEEECBSSCCC--CCCCCCGGGTEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCeeeecccCH-HHHHHHhCCCCCCceEEEEEEEeCCCCCCC--CCCCCCHHHeeeeC
Confidence 9999999999999999999999999875 899999999 89999999999999998642 45899999999984
No 7
>3g14_A Nitroreductase family protein; structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: MSE; 1.75A {Clostridium novyi}
Probab=100.00 E-value=7.2e-39 Score=264.75 Aligned_cols=171 Identities=23% Similarity=0.388 Sum_probs=139.4
Q ss_pred HHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccc
Q psy144 56 EEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (254)
|+|.++|++|||+|+|++++|+.++|++||++|++|||++|+|||+|+||++++.+++|.+.+.. .
T Consensus 2 M~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~aPS~~n~qpw~~~vv~~~~~~~~l~~~~~~--------~------ 67 (193)
T 3g14_A 2 MEFYEVIKKRKSIKKFEQTAIDRDKLLKIIDMAMRAPSWKNKTPYKFIVVESDKLKLDIANAIEN--------K------ 67 (193)
T ss_dssp CBHHHHHHHCCBCCCBCCCCCCHHHHHHHHHHHHTCCCGGGCCCEEEEEECCHHHHHHHHHHBCC--------S------
T ss_pred CcHHHHHHhCcchhcCCCCCCCHHHHHHHHHHHHHCcCccCCCCeEEEEEeCHHHHHHHHHHHhh--------c------
Confidence 67999999999999999999999999999999999999999999999999999888888775410 0
Q ss_pred ccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhh
Q psy144 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTL 215 (254)
Q Consensus 136 ~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~ 215 (254)
....+.++.+||++|+++.+....... ....+..+|+|+++|||+|+|+++||||||+|+++. +.++++
T Consensus 68 -------~~~~~~~~~~Ap~~ivv~~~~~~~~~~---~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~g~~~~-~~v~~~ 136 (193)
T 3g14_A 68 -------TSAASEAVLNSPMTIVAVANPEESGDV---SGKEIYLIDTAIAMEHIVLGATDEGYGTCWIAAFNE-NKIKEA 136 (193)
T ss_dssp -------SSHHHHHHHHSSEEEEEEECHHHHCEE---TTEEHHHHHHHHHHHHHHHHHHHTTCBBCCBCCBCH-HHHHHH
T ss_pred -------cccchhhhcCCCEEEEEEEeCcccccc---ccccchHhhHHHHHHHHHHHHHHCCCCEEEEcccCH-HHHHHH
Confidence 011256688999999999875422110 012467789999999999999999999999998865 899999
Q ss_pred cCCCCCceEEEEEeeccC---CCCCCCCCCCCCCcccceEe
Q psy144 216 LDRPGNEKLALLLPIGYP---ALDCTVPNLKRKDIEDIIVE 253 (254)
Q Consensus 216 Lglp~~~~~~~~l~vGyp---~~~~~~p~~~Rkpl~ei~~~ 253 (254)
||+|+++.++++++|||| +... +..+|+|+++++++
T Consensus 137 l~lp~~~~~~~~i~lGyp~~~~~~~--~~~~R~~~~e~v~~ 175 (193)
T 3g14_A 137 LKIPDNLRVVALTPLGVPKDSAEDE--PHHPKKDMDEYLYI 175 (193)
T ss_dssp HTCCTTSEEEEEEEEBCBCC-----------CCCGGGGEEE
T ss_pred hCcCCCceEEEEEEEeCCCcccccC--CCCCCCCHHHeEEe
Confidence 999999999999999999 5433 23579999999986
No 8
>3gbh_A NAD(P)H-flavin oxidoreductase; putative NAD(P)H:FMN oxidoreductase, structural genomics, JO center for structural genomics; HET: MSE FMN PGE; 2.00A {Staphylococcus epidermidis atcc 12228} SCOP: d.90.1.0
Probab=100.00 E-value=1.3e-38 Score=266.56 Aligned_cols=173 Identities=20% Similarity=0.390 Sum_probs=144.7
Q ss_pred cHHHHHHHHHhccccCCCCC-CCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcc
Q psy144 54 RSEEFYQLMNARRTVRFFSD-EAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGK 132 (254)
Q Consensus 54 ~~~~~~e~i~~RRSvR~F~~-~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~ 132 (254)
+.+++.++|++|||+|+|++ ++||+++|++||++|++|||++|+|||+|+||++++.+++|.+++.
T Consensus 7 ~~~~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~aa~~APS~~n~Qpw~f~vv~~~e~~~~L~~~~~------------- 73 (213)
T 3gbh_A 7 RINDFNEVLNSRKSVKVFDENYKIPREEMDEIITKATKAPSSVNMQPWRIAVVQSDEMKEKVKESFG------------- 73 (213)
T ss_dssp CCCBHHHHHHHCCBCCCBCTTCCCCHHHHHHHHHHHTTSCCGGGCCCEEEEEECSHHHHHHHTGGGG-------------
T ss_pred CHHHHHHHHHhhhhHhhcCCCCCCCHHHHHHHHHHHHhCCCcCCCCCcEEEEEeCHHHHHHHHHhhc-------------
Confidence 45789999999999999998 6999999999999999999999999999999999988888876320
Q ss_pred cccccchhhhhhHHhhhhcCCCeEEEEEeecCCcccc----------c----------------------cccccchhhc
Q psy144 133 EWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEE----------G----------------------KRKKHYYHEM 180 (254)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~----------~----------------------~~~~~~~~~~ 180 (254)
+.+..+.+||++|+++.+....... + ......+...
T Consensus 74 ------------~~~~~~~~ap~~iv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (213)
T 3gbh_A 74 ------------FNSRQLTTSSAMLIIFGDLQNYEKAEQIYGDAVEQQLMTEDIKAQLLDWILPYYKNLSREGMKDIVNI 141 (213)
T ss_dssp ------------GGHHHHHHSSEEEEEEEETTGGGGHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred ------------cCchhhccCCeeEEEEecCchhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1245578899999999876432100 0 0001124578
Q ss_pred cHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcCCC-CCceEEEEEeeccCCCCCCCCCCCCCCcccceEeC
Q psy144 181 SVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRP-GNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254 (254)
Q Consensus 181 ~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp-~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~~ 254 (254)
|+|+++||++|+|+++||||||+++++. ++++++|||| +++.++++++||||+++.. ..+|+|++|+++|+
T Consensus 142 d~g~a~~~l~LaA~~~Glgsc~i~~~~~-~~v~~~L~lp~~~~~~~~~i~lGy~~~~~~--~~~R~~~~evv~~~ 213 (213)
T 3gbh_A 142 DSSLMAMQLMLTAKAHGYDTNPIGGFDK-ENIADIIGYDSDRYVPVLAIAIGKKAQDAH--DSVRLPIDDVREFL 213 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCSCT-TTHHHHHTCCTTTEEEEEEEEEECBSSCCC--CCCCCCGGGTEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCeeeecCcCH-HHHHHHhCCCccCceEEEEEEecccCCCCC--CCCCCCHHHheecC
Confidence 9999999999999999999999999986 8999999999 9999999999999987642 45799999999985
No 9
>3eo8_A BLUB-like flavoprotein; YP_001089088.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.74A {Clostridium difficile 630}
Probab=100.00 E-value=3.6e-38 Score=264.57 Aligned_cols=196 Identities=23% Similarity=0.307 Sum_probs=146.9
Q ss_pred HHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccc
Q psy144 56 EEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (254)
|+++++|++|||+|+|++++||.++|++||++|++|||++|+|||+|+||++++.+++|.+.+.......... ......
T Consensus 2 M~~~~~i~~RrSiR~f~~~~v~~e~l~~il~aa~~APS~~n~Qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~ 80 (219)
T 3eo8_A 2 MELQDTIFKRQSVRKFKNQDVSDEDILKMIKAAGAAPSGKNIQNWHFVVIKRRDLMEKIADVITKKQQEILVE-MDKVSV 80 (219)
T ss_dssp CBHHHHHHHCCBCCCBCSCCCCHHHHHHHHHHHHTSCCGGGCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH-HTTTCH
T ss_pred CchHHHHHhCeehhccCCCCCCHHHHHHHHHHHHhCCCCCCCCCeEEEEEECHHHHHHHHHHHHHHHHHhhhc-cccccc
Confidence 6799999999999999999999999999999999999999999999999999998899988875432111000 000000
Q ss_pred ccchhhh--hhHHhhhhcCCCeEEEEEeecCCcc------ccccc--c-----ccchhhccHHHHHHHHHHHHHHcCCcc
Q psy144 136 TDLRPLK--TSWQKEYLTTAPYLVVVFKQTYGFK------EEGKR--K-----KHYYHEMSVSLACGIMLAAIQYCGLVT 200 (254)
Q Consensus 136 ~~~~~~~--~~~~~~~~~~Ap~~ii~~~~~~~~~------~~~~~--~-----~~~~~~~~~g~a~~~l~Laa~a~Glgs 200 (254)
.....+. ....+.++.+||++|+++.+..... ..+.. . ...+...|+|+++|||+|+|+++||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~Ap~~ivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs 160 (219)
T 3eo8_A 81 DKANRFRKFVKNFTLFYLKAPVLVLVFTKVYNPSGYYELELIDAPKETIDKLFIRNPGMQSLGAAIENFTLSAIELGYGS 160 (219)
T ss_dssp HHHHHHHHHHHHHTGGGGGSSEEEEEEECCCCCTTHHHHHHTTCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhhhhhhhHhhcCCEEEEEEecccchhhhhhhhhcccchhHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCee
Confidence 0000000 0112467889999999998865321 00000 0 023556799999999999999999999
Q ss_pred ccccC-CCChHHHHhhcC----CCCCc-eEEEEEeeccCCCCCCCCCCCCCCcccceEeC
Q psy144 201 LTSTP-LNAGPALRTLLD----RPGNE-KLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254 (254)
Q Consensus 201 ~~~~~-~~~~~~v~~~Lg----lp~~~-~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~~ 254 (254)
||+|+ ..+.++++++|| +|+++ .++++++||||++... ..+|+|++++++|+
T Consensus 161 ~~~~~~~~~~~~v~~~L~~~~~lp~~~~~~~~~i~lGyp~~~~~--~~~R~~~~e~v~~~ 218 (219)
T 3eo8_A 161 CWLTSQNYAADEIEAVLEAETGFEKGEYFLGAMLALGVPEDNLK--SPSKKPVEEICTFI 218 (219)
T ss_dssp EEECTTGGGHHHHHHHHHHHHCCCCTTCEEEEEEEEECBCSSCC--CCCCCCGGGGEEEE
T ss_pred eeecCcccChHHHHHHhCcccCCCCCCceEEEEEEEeccCCCCC--CCCCCCHHHeEEEe
Confidence 99986 234489999999 99765 9999999999988642 45899999999873
No 10
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*
Probab=100.00 E-value=3.6e-38 Score=260.38 Aligned_cols=169 Identities=18% Similarity=0.298 Sum_probs=141.5
Q ss_pred hcHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcc
Q psy144 53 QRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGK 132 (254)
Q Consensus 53 ~~~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~ 132 (254)
.+.|+|.++|++|||+|+|++++|+.++|++|+++|++|||++|+|||+|+||++++.+++|.+..
T Consensus 17 ~~~~~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~APS~~n~Qpw~f~vv~~~e~~~~l~~~~-------------- 82 (191)
T 3h4o_A 17 FQGMNFVELAKKRYSCRNYQDRKVEKEKLEKVLDVARIAPTGGNRQPQRLIVIQEKEGINKLSKAA-------------- 82 (191)
T ss_dssp ---CCHHHHHHHCCBCCCBCSCCCCHHHHHHHHHHHHHSCCGGGCCCEEEEEECSHHHHHHHHHHS--------------
T ss_pred cCHHHHHHHHHhCccccccCCCCCCHHHHHHHHHHHHhCcCcCCCcCeEEEEEeCHHHHHHHHHhc--------------
Confidence 456799999999999999999999999999999999999999999999999999988888776642
Q ss_pred cccccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHH
Q psy144 133 EWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPAL 212 (254)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v 212 (254)
.+.+||++|+++++........ .....+..+++|+++|||+|+|+++||||||+|+++. +++
T Consensus 83 ----------------~~~~Ap~~ivv~~~~~~~~~~~-~~~~~~~~~d~g~a~~nl~LaA~~lGLgsc~~~~~~~-~~v 144 (191)
T 3h4o_A 83 ----------------NIYDAPLAILVCGDKDKVWTRP-FDGKQLTDIDTSIVTDHMMLQATELGLASVWVCYFNP-DII 144 (191)
T ss_dssp ----------------CCTTCSEEEEEEEETTTSCBCT-TTCCBCHHHHHHHHHHHHHHHHHHTTCEEEEECCSCH-HHH
T ss_pred ----------------CcCCCCEEEEEEEecchhcccc-cccccchHHHHHHHHHHHHHHHHHCCCCEEEEcccCH-HHH
Confidence 1568999999998865321111 0112356789999999999999999999999999875 899
Q ss_pred HhhcCCCCCceEEEEEeeccCCCCCCCCC---CCCCCcccceEe
Q psy144 213 RTLLDRPGNEKLALLLPIGYPALDCTVPN---LKRKDIEDIIVE 253 (254)
Q Consensus 213 ~~~Lglp~~~~~~~~l~vGyp~~~~~~p~---~~Rkpl~ei~~~ 253 (254)
+++||+|+++.++++++||||++....|. .+|+|++|+++|
T Consensus 145 ~~~l~lp~~~~~~~~i~lGyp~~~~~~p~~~~~~R~p~~evv~~ 188 (191)
T 3h4o_A 145 REEFSLPDNLEPINILLMGYESKIPESPERHEKTRVPLSEIVSY 188 (191)
T ss_dssp HHHTTCCTTEEEEEEEEEECBSSCCCCTTTHHHHSCCGGGTCCS
T ss_pred HHHhCcCCCceEEEEEEEeccCCccCCccccccCCCCHHHeEEe
Confidence 99999999999999999999998732232 359999999986
No 11
>3k6h_A Nitroreductase family protein; APC5990, agrobacterium tumefaciens ST structural genomics, PSI-2, protein structure initiative; HET: FMN; 3.05A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=5.1e-38 Score=260.35 Aligned_cols=184 Identities=18% Similarity=0.267 Sum_probs=144.5
Q ss_pred HHHHHHHHHhccccC-CCCCCCCC-HHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcc
Q psy144 55 SEEFYQLMNARRTVR-FFSDEAVP-KEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGK 132 (254)
Q Consensus 55 ~~~~~e~i~~RRSvR-~F~~~~V~-~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~ 132 (254)
.+++.++|++||||| +|+++||+ +|+|++||++|++|||++|+|||+|+||+++ .+++|.+.+..... ....
T Consensus 8 m~~~~~~i~~RrSvR~~f~~~~v~~~e~l~~il~aa~~APS~~n~Qpw~f~vv~~~-~~~~l~~~~~~~~~-----~~~~ 81 (197)
T 3k6h_A 8 DIKLLDYLRVRRSTPALQLSEPGPSKGEIEEILRLAVRVPDHGKLAPWRFVVYRGE-ERVRLSEAALRIAL-----EKNP 81 (197)
T ss_dssp CCBHHHHHTTCCCCCSTTCBSCCCCHHHHHHHHHHHTCSCCTTSCCCEEEEEEETH-HHHHHHHHHHHHHH-----HHSS
T ss_pred cHHHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHhCcCcCCCcCeEEEEEcch-HHHHHHHHHHHHHH-----hcCC
Confidence 468999999999999 89999997 9999999999999999999999999999998 57888887643211 0000
Q ss_pred cccccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCC-CChHH
Q psy144 133 EWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPL-NAGPA 211 (254)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~-~~~~~ 211 (254)
.+........+..+.+||++|+++.+..... .....+...|+|+++||++|+|+++||||||+++. ...++
T Consensus 82 ----~~~~~~~~~~~~~~~~Ap~~ivv~~~~~~~~----~~~~~~~~~d~g~a~~nl~LaA~~~GLgt~~~~~~~~~~~~ 153 (197)
T 3k6h_A 82 ----DLDLQQQEAERTRFTRAPVVIAVISTAKPHF----KIPEWEQVMSAGAVCLNVIFAANASGFAANWLTEWLAFDPA 153 (197)
T ss_dssp ----SCCHHHHHHHHTTTTSSSEEEEEEECCCCCS----SSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCGGGTCHH
T ss_pred ----CCCHHHHHHHHhhhhcCCEEEEEEEecCCCC----CCCHHHHHHHHHHHHHHHHHHHHHCCCceEEecCccccCHH
Confidence 0111111223577899999999998764321 00112346799999999999999999999999863 22367
Q ss_pred HHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEeC
Q psy144 212 LRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254 (254)
Q Consensus 212 v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~~ 254 (254)
++++||+|+++.++++++||||++.. +..+|+|++|+++|+
T Consensus 154 v~~~l~lp~~~~~~~~i~lGyp~~~~--~~~~R~~~~e~v~~~ 194 (197)
T 3k6h_A 154 FLAEIGVSAEEKVAGYIHIGSTTFPP--VERPRPELADVVTWV 194 (197)
T ss_dssp HHHHHTCCSSCEEEEEEEEEBCCCCC--CCCCCCCHHHHEEEE
T ss_pred HHHHhCcCCCCEEEEEEEEeCCCCCC--CCCCCCCHHHeEEec
Confidence 99999999999999999999998854 246899999999874
No 12
>4dn2_A Nitroreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgrc; HET: FMN; 1.50A {Geobacter metallireducens} PDB: 4g8s_A*
Probab=100.00 E-value=2.3e-38 Score=264.75 Aligned_cols=183 Identities=26% Similarity=0.378 Sum_probs=146.1
Q ss_pred cHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccc
Q psy144 54 RSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKE 133 (254)
Q Consensus 54 ~~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 133 (254)
..|+|.++|++|||+|+|++++|+.++|++||++|++|||++|+|||+|+||++++.+++|.++...+ .+.. .
T Consensus 21 ~~m~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~APS~~n~Qpw~f~vv~~~~~~~~l~~~~~~~---~~~~----~ 93 (208)
T 4dn2_A 21 QSMETLEAIRTRRSVRKFSDRPVEPEKLRAVLDAARLAPSWANMQCWRFVVVEDQATKVQISELSYVE---AYFG----P 93 (208)
T ss_dssp TCCBHHHHHHHCCBCCCBCCCCCCHHHHHHHHHHHHTSCCGGGCCCEEEEEECCHHHHHHHHHTCCCC---TTCC----C
T ss_pred CcchHHHHHHhCccccCCCCCCCCHHHHHHHHHHHHHCcCcCCCCCEEEEEEECHHHHHHHHHhhhhh---hhhh----h
Confidence 45789999999999999999999999999999999999999999999999999998888887732100 0000 0
Q ss_pred ccccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHH
Q psy144 134 WTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALR 213 (254)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~ 213 (254)
+.. .....+..+.+||++|+++.+....... ....+..+|+|+++|||+|+|+++||||||+|+++. ++++
T Consensus 94 ~~~-----~~~~~~~~~~~Ap~~ivv~~~~~~~~~~---~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~g~~~~-~~v~ 164 (208)
T 4dn2_A 94 KGY-----KSNPAQKALAEAPVVIIACGEPPQSGEL---RGQQYYLTDVGIAAQNLMLAAHDLGLGSVFVGVFDE-QQLG 164 (208)
T ss_dssp TTC-----SSCTTHHHHHHSSEEEEEEECGGGSCEE---TTEETHHHHHHHHHHHHHHHHHHTTCEECCBCCCCH-HHHH
T ss_pred ccc-----cccchhhhhcCCCEEEEEEEeccccccc---ccccchHHHHHHHHHHHHHHHHHCCCCEEEEcccCH-HHHH
Confidence 000 0011245688999999999876432110 112367789999999999999999999999998865 8999
Q ss_pred hhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEe
Q psy144 214 TLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE 253 (254)
Q Consensus 214 ~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~ 253 (254)
++||+|+++.++++++||||++... +..+|+|++|++++
T Consensus 165 ~~L~lp~~~~~~~~i~lGyp~~~~~-~~~~R~~~~e~v~~ 203 (208)
T 4dn2_A 165 ELLGIPAELRIVGLFPLGYPLEGPK-AGPSRKPLDEIVHY 203 (208)
T ss_dssp HHHTCCTTCEEEEEEEEECBSSCCC-CCCCCCCHHHHEEE
T ss_pred HHhCcCCCceEEEEEEEeCcCCCCC-CCCCCCCHHHEEEe
Confidence 9999999999999999999988652 24579999999986
No 13
>3qdl_A Oxygen-insensitive NADPH nitroreductase; oxidoreductase; HET: FMN; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=2.7e-38 Score=264.41 Aligned_cols=171 Identities=25% Similarity=0.343 Sum_probs=140.7
Q ss_pred HHHHHHHHhccccCCCCCCC-CCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccc
Q psy144 56 EEFYQLMNARRTVRFFSDEA-VPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEW 134 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~~~-V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 134 (254)
..|.++|++|||+|+|++++ |+.++|++||++|++|||++|+|||+|+||++++.+++|.+.+..
T Consensus 7 ~~~~~~i~~RrSvR~f~~~~~V~~e~l~~ileaa~~APS~~N~Qpw~fivv~~~~~~~~l~~~~~~-------------- 72 (210)
T 3qdl_A 7 EKRRQLLNERHSCKMFDSHYEFSSTELEEIAEIARLSPSSYNTQPWHFVMVTDKDLKKQIAAHSYF-------------- 72 (210)
T ss_dssp HHHHHHHHHSCBCCCBCTTCCCCHHHHHHHHHHHHTCCCGGGCCCEEEEEECCHHHHHHHHTTSGG--------------
T ss_pred HHHHHHHHhchhHhhcCCCCCCCHHHHHHHHHHHHhCcCcCCCCCeEEEEEcCHHHHHHHHHHHhh--------------
Confidence 46778999999999999986 999999999999999999999999999999999988888775421
Q ss_pred cccchhhhhhHHhhhhcCCCeEEEEEeecCCcc-----------cc--------------------ccccccchhhccHH
Q psy144 135 TTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFK-----------EE--------------------GKRKKHYYHEMSVS 183 (254)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~-----------~~--------------------~~~~~~~~~~~~~g 183 (254)
.+..+.+||++|+++.+..... +. .......|...|+|
T Consensus 73 -----------~~~~~~~Ap~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g 141 (210)
T 3qdl_A 73 -----------NEEMIKSASALMVVCSLRPSELLPHGHYMQNLYPESYKVRVIPSFAQMLGVRFNHSMQRLESYILEQCY 141 (210)
T ss_dssp -----------GHHHHHHCSEEEEEEECCHHHHCC--------------------------------CCHHHHHHHHHHH
T ss_pred -----------cchhhcCCCEEEEEEecchHHHHHHHHHHccCCcHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHH
Confidence 1345678898888876431100 00 00011235567999
Q ss_pred HHHHHHHHHHHHcCCccccccCCCChHHHHhhcCCC-CCceEEEEEeeccCCCCCCCCCCCCCCcccceEeC
Q psy144 184 LACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRP-GNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254 (254)
Q Consensus 184 ~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp-~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~~ 254 (254)
+++||++|+|+++||||||+++++. ++++++||+| +++.++++++||||++.. +..+|+|++++++|+
T Consensus 142 ~a~~~~~LaA~~~Glgs~~~~~~~~-~~~~~~l~lp~~~~~~~~~i~~Gy~~~~~--~~~~R~~~~e~v~~~ 210 (210)
T 3qdl_A 142 IAVGQICMGVSLMGLDSCIIGGFDP-LKVGEVLEERINKPKIACLIALGKRVAEA--SQKSRKSKVDAITWL 210 (210)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCSCH-HHHHHHHHTTSCCCEEEEEEEEECBSSCC--CCCCCCCHHHHEEEC
T ss_pred HHHHHHHHHHHHcCCCceeecccCH-HHHHHHhCCCCCCceEEEEEEeeccCCCC--CCCCCCCHHHHeecC
Confidence 9999999999999999999999875 8999999999 999999999999998865 345899999999985
No 14
>3gr3_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: MSE FMN UNL; 1.45A {Bartonella henselae str}
Probab=100.00 E-value=7.2e-38 Score=265.24 Aligned_cols=191 Identities=18% Similarity=0.327 Sum_probs=143.3
Q ss_pred cHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhh--hh--
Q psy144 54 RSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYD--KR-- 129 (254)
Q Consensus 54 ~~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~--~~-- 129 (254)
..|++.++|++|||||+|+++|||.|+|++||++|++|||++|+|||+|+||++++ +++|.+.+......... ..
T Consensus 5 ~~m~~~~~i~~RRSvR~f~~~pV~~e~l~~il~aA~~APS~~N~Qpw~fiVv~~~~-~~~l~~~~~~~~~~~~~~~~~~~ 83 (230)
T 3gr3_A 5 APIDIFQSILSRKSIRAFTDQPVTQETIREILKLAARAPSGTNLQPWQVIVLTGKI-LQKVGQELSQLVLSGIKGEREYH 83 (230)
T ss_dssp CCCBHHHHHHHCCBCCCBCSCCCCHHHHHHHHHHHTTSCCGGGCCCCEEEEECHHH-HHHHHHHHHHHHHTTCCCCCSSC
T ss_pred hhhHHHHHHHhCeehhccCCCCCCHHHHHHHHHHHHhCcCcCCCCCeEEEEEeChH-HHHHHHHHHHHHhcCCCcccccc
Confidence 34789999999999999999999999999999999999999999999999999986 45555544321110000 00
Q ss_pred -hcccccccchh----------------------hhhhHHhh-hhcCCCeEEEEEeecCCccccccccccchhhccHHHH
Q psy144 130 -MGKEWTTDLRP----------------------LKTSWQKE-YLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLA 185 (254)
Q Consensus 130 -~~~~~~~~~~~----------------------~~~~~~~~-~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a 185 (254)
....|...+.. ....+... .+.+||++|+++.+... ..+..+|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~AP~~i~v~~~~~~---------~~~~~~d~g~a 154 (230)
T 3gr3_A 84 YYPRQWREPYLSRRRKVGLDLYKSLGIQKGDQEKMLHQKAKNFLFYGAPVGLLFTIDHDM---------EMGSWLDLGMF 154 (230)
T ss_dssp CSCSSCCTTHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGGGGGGCSEEEEEEEETTC---------CTHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhhhhcCCCEEEEEEecCCc---------cchHHHHHHHH
Confidence 01112111110 00111111 36899999999887531 12557899999
Q ss_pred HHHHHHHHHHcCCccccccCCCC-hHHHHhhcCCCCCceEEEEEeeccCCCCCCCC--CCCCCCcccceEeC
Q psy144 186 CGIMLAAIQYCGLVTLTSTPLNA-GPALRTLLDRPGNEKLALLLPIGYPALDCTVP--NLKRKDIEDIIVEF 254 (254)
Q Consensus 186 ~~~l~Laa~a~Glgs~~~~~~~~-~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p--~~~Rkpl~ei~~~~ 254 (254)
+|||+|+|+++||||||+|++.. .+.++++||+|+++.++++++||||++....+ ..+|+|++|+++|+
T Consensus 155 ~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~l~lp~~~~~~~~i~lGyp~~~~~~~~~~~~R~p~~e~v~~~ 226 (230)
T 3gr3_A 155 MQTIMLAARGFGLDTCAQAAFADYHKQIRSLLSVPSDRHIICGMALGYRDMNAPENNFETEREPIDNFVHFI 226 (230)
T ss_dssp HHHHHHHHHTTTCEEEEEGGGGGGHHHHHHHHTCCTTEEEEEEEEEECBCTTCGGGSCCCCCCCGGGTEEEE
T ss_pred HHHHHHHHHHCCCceeeecccccchHHHHHHcCcCCCceEEEEEEEeccCCccccccCCCCCCCHHHhEEec
Confidence 99999999999999999998762 47999999999999999999999998865321 35799999999873
No 15
>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase, thermophIle; HET: FMN; 1.59A {Thermus thermophilus} SCOP: d.90.1.1
Probab=100.00 E-value=2.1e-38 Score=263.23 Aligned_cols=172 Identities=19% Similarity=0.366 Sum_probs=140.6
Q ss_pred cHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccc
Q psy144 54 RSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKE 133 (254)
Q Consensus 54 ~~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 133 (254)
..|++.++|++|||+|+|++++||.++|++||++|++|||++|+|||+|+||++++.+++|.+++..
T Consensus 6 ~~m~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~------------- 72 (205)
T 1nox_A 6 PVLDAKTAALKRRSIRRYRKDPVPEGLLREILEAALRAPSAWNLQPWRIVVVRDPATKRALREAAFG------------- 72 (205)
T ss_dssp CCCCHHHHHHHCCCCCCBCSCCCCHHHHHHHHHHHTTCCCGGGCCCEEEEEECCHHHHHHHHHHTTT-------------
T ss_pred ccchHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHhhCcCcCCccceEEEEEcCHHHHHHHHHhccC-------------
Confidence 3478999999999999999999999999999999999999999999999999999888888874311
Q ss_pred ccccchhhhhhHHhhhhcCCCeEEEEEeecCC-------cccc-------------------c--cccccchhhccHHHH
Q psy144 134 WTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYG-------FKEE-------------------G--KRKKHYYHEMSVSLA 185 (254)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~-------~~~~-------------------~--~~~~~~~~~~~~g~a 185 (254)
+..+.+||++|+++.+... .... + ......+..+++|++
T Consensus 73 -------------~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a 139 (205)
T 1nox_A 73 -------------QAHVEEAPVVLVLYADLEDALAHLDEVIHPGVQGERREAQKQAIQRAFAAMGQEARKAWASGQSYIL 139 (205)
T ss_dssp -------------CTHHHHSSEEEEEEECHHHHHHTGGGTSCTTCCTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred -------------ChhhcCCCeEEEEEecccchHHHHHHHHHhccCcHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 2234567877777765321 0000 0 011124567899999
Q ss_pred HHHHHHHHHHcCCccccccCCCChHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEeC
Q psy144 186 CGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254 (254)
Q Consensus 186 ~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~~ 254 (254)
+||++|+|+++||||||+|+++. ++++++||+|+++.++++++||||+.... ..+|+|++++++|.
T Consensus 140 ~~nl~LaA~~~Glgs~~~~~~~~-~~v~~~l~lp~~~~~~~~i~lGyp~~~~~--~~~R~~~~e~~~~~ 205 (205)
T 1nox_A 140 LGYLLLLLEAYGLGSVPMLGFDP-ERVRAILGLPSRAAIPALVALGYPAEEGY--PSHRLPLERVVLWR 205 (205)
T ss_dssp HHHHHHHHHHTTCEEEEECCSCH-HHHHHHHTCCTTCEEEEEEEEESBSSCCC--CCCCCCHHHHCCCC
T ss_pred HHHHHHHHHHcCCCcccccCCCH-HHHHHHhCCCCCCceEEEEEeccCCCCCC--CCCCCCHHHheeeC
Confidence 99999999999999999998865 89999999999999999999999987643 46899999998873
No 16
>3m5k_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structural genomics, joint center for structural genomics; HET: MSE FMN; 1.86A {Parabacteroides distasonis}
Probab=100.00 E-value=2.3e-37 Score=251.21 Aligned_cols=162 Identities=23% Similarity=0.293 Sum_probs=139.0
Q ss_pred HHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccc
Q psy144 55 SEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEW 134 (254)
Q Consensus 55 ~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 134 (254)
.|+++++|++|||+|+|++++|+.++|++|+++|++|||++|+|||+|+||++++.+++|.+.+.
T Consensus 5 ~m~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~APS~~n~qpw~~~vv~~~~~~~~l~~~~~--------------- 69 (172)
T 3m5k_A 5 ENQTLETILNRKSVRKYKDRPVEKEKIDKLIRAGMAAPSSRDRRPWEFIIVTDRKALDTMAEGLP--------------- 69 (172)
T ss_dssp CCHHHHHHHHCCCCCCBCSSCCCHHHHHHHHHHHHTSCCGGGCCCEEEEEECCHHHHHHHHHHCT---------------
T ss_pred chHHHHHHHhCccccCcCCCCCCHHHHHHHHHHHHhCcCcCCCCCeEEEEEcCHHHHHHHHHhcc---------------
Confidence 37899999999999999999999999999999999999999999999999999888887766431
Q ss_pred cccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCC---hHH
Q psy144 135 TTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNA---GPA 211 (254)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~---~~~ 211 (254)
.+.++.+||++|+++.+.... ..+...++|+++||++|+|+++||||||+|++.. .++
T Consensus 70 -----------~~~~~~~Ap~~iv~~~~~~~~--------~~~~~~d~g~a~~nl~LaA~~~Glgt~~~~~~~~~~~~~~ 130 (172)
T 3m5k_A 70 -----------FARMLKETRQAIVVCGDTIKS--------SNAWFLDCSAASQNLLLAAESMGLGAVWTAVYPYPDRIEI 130 (172)
T ss_dssp -----------TCGGGGGCSEEEEEEEETTTC--------TTTHHHHHHHHHHHHHHHHHHTTCEECCEECTTCHHHHHH
T ss_pred -----------cchhHhcCCEEEEEEecCccC--------CccHHHHHHHHHHHHHHHHHHcCCeEEEecccCcchhHHH
Confidence 134578999999999886431 1245679999999999999999999999998864 378
Q ss_pred HHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEe
Q psy144 212 LRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE 253 (254)
Q Consensus 212 v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~ 253 (254)
++++||+|+++.++++++||||++... .+|++.++++++
T Consensus 131 ~~~~l~lp~~~~~~~~i~lGyp~~~~~---~~~r~~~~~v~~ 169 (172)
T 3m5k_A 131 VRKELRLPDHIMPLNVIPVGYPMQKET---PKNKYNVQQIHH 169 (172)
T ss_dssp HHHHHTCCTTEEEEEEEEEECBSSCCC---CCCCCCGGGEEE
T ss_pred HHHHhCcCCCcEEEEEEEEeccCCCCC---CCCCCccccEEe
Confidence 999999999999999999999987653 245567888875
No 17
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Probab=100.00 E-value=4.8e-38 Score=261.09 Aligned_cols=171 Identities=20% Similarity=0.330 Sum_probs=138.0
Q ss_pred HHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccc
Q psy144 55 SEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEW 134 (254)
Q Consensus 55 ~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 134 (254)
.|++.++|++|||+|+|+++|||.++|++||++|++|||++|+|||+|+||++++. +|.+++.
T Consensus 3 ~m~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~APS~~n~Qpw~f~vv~~~~~--~l~~~~~--------------- 65 (204)
T 2b67_A 3 AMKFLELNKKRHATKHFTDKLVDPKDVRTAIEIATLAPSAHNSQPWKFVVVREKNA--ELAKLAY--------------- 65 (204)
T ss_dssp -CHHHHHHHHCCBCCCBCSCCCCHHHHHHHHHHHTTSCCGGGCCCEEEEEESSSHH--HHHTTBC---------------
T ss_pred hhHHHHHHHhhhhhhccCCCCCCHHHHHHHHHHHHhCcCcccCCCeEEEecCChhH--HHHHHHH---------------
Confidence 37899999999999999999999999999999999999999999999999999875 5543210
Q ss_pred cccchhhhhhHHhhhhcCCCeEEEEEeecCCcc------c-------------cc------------cccccchhhccHH
Q psy144 135 TTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFK------E-------------EG------------KRKKHYYHEMSVS 183 (254)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~------~-------------~~------------~~~~~~~~~~~~g 183 (254)
.+.+..+.+||++|+++.+..... . .. ......++..|+|
T Consensus 66 ---------~~~~~~~~~a~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~d~g 136 (204)
T 2b67_A 66 ---------GSNFEQVSSAPVTIALFTDTDLAKRARKIARVGGANNFSEEQLQYFMKNLPAEFARYSEQQVSDYLALNAG 136 (204)
T ss_dssp ---------TTHHHHHHHSSEEEEEEEESCHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ---------HcCchhhcCCCEEEEEEecCchHHHHHHHHHcccchhhHHHHHHHHHhhhhhhhhccCHHHHHHHHHHHHH
Confidence 012345678999999888753110 0 00 0011124567899
Q ss_pred HHHHHHHHHHHHcCCccccccCCCChHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEeC
Q psy144 184 LACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254 (254)
Q Consensus 184 ~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~~ 254 (254)
+++|||+|+|+++||||||+|+++. ++++++||||+++.++++++||||+.+. +..+|+|++++++|+
T Consensus 137 ~a~~nl~LaA~~~Glgsc~~~~~~~-~~v~~~l~lp~~~~~~~~i~lGyp~~~~--~~~~R~~~~e~v~~~ 204 (204)
T 2b67_A 137 LVAMNLVLALTDQGIGSNIILGFDK-SKVNEVLEIEDRFRPELLITVGYTDEKL--EPSYRLPVDEIIEKR 204 (204)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCBCH-HHHHHHHTCCTTEEEEEEEEEECBSSCC--CCCCCCCGGGTEEEC
T ss_pred HHHHHHHHHHHHCCCceeeEcccCH-HHHHHHhCCCCCCceEEEEEeecCCCCC--CCCCCCCHHHheecC
Confidence 9999999999999999999999765 8999999999999999999999998763 346899999999884
No 18
>3e39_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN PGE; 1.70A {Desulfovibrio desulfuricans subsp}
Probab=100.00 E-value=1.9e-38 Score=258.85 Aligned_cols=165 Identities=19% Similarity=0.261 Sum_probs=139.4
Q ss_pred hcHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHH-HHHHHHHHHhhhhhhhhhhc
Q psy144 53 QRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMK-AKIRDIVESEERINYDKRMG 131 (254)
Q Consensus 53 ~~~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~-~~l~~~~~~~~~~~~~~~~~ 131 (254)
.+.|++.++|++|||+|+|++++|+.++|++||++|++|||++|+|||+|++|++++.+ ++|.+.+.
T Consensus 3 ~~~m~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~aPs~~n~qp~~~~vv~~~~~~~~~l~~~~~------------ 70 (178)
T 3e39_A 3 LTENPVLQAIRQRRSIRRYTDEAVSDEAVRLILEAGIWAPSGLNNQPCRFLVIRADDPRCDILAAHTR------------ 70 (178)
T ss_dssp -CCCHHHHHHHHCCBCCCBCSCCCCHHHHHHHHHHHHTSCCGGGCCCEEEEEEETTSTHHHHHHTTCS------------
T ss_pred CcchHHHHHHHhCcchhcCCCCCCCHHHHHHHHHHHHhCCCCCCCCCeEEEEEECHHHHHHHHHHhhh------------
Confidence 35689999999999999999999999999999999999999999999999999998766 76655321
Q ss_pred ccccccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCcccccc--CCCCh
Q psy144 132 KEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTST--PLNAG 209 (254)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~--~~~~~ 209 (254)
.+.++.+||++|+++.+..... ...+...|+|+++||++|+|+++||||||+| +++.
T Consensus 71 --------------~~~~~~~Ap~~iv~~~~~~~~~------~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~- 129 (178)
T 3e39_A 71 --------------YGHIVRGAKVIILVFLDREAMY------NEVKDHQAAGAAVQNMLLAAHALQLGAVWLGEIINQA- 129 (178)
T ss_dssp --------------CHHHHHHCSEEEEEEEEGGGCS------CHHHHHHHHHHHHHHHHHHHHHTTCEEEEECGGGGGH-
T ss_pred --------------cchhhcCCCEEEEEEEcccccc------ccccHHHHHHHHHHHHHHHHHHcCCeEEEecCcccch-
Confidence 1356789999999998764321 0013478999999999999999999999999 5554
Q ss_pred HHHHhhcCCCCC-ceEEEEEeeccCCCCCCCCCCCCCCcccceEe
Q psy144 210 PALRTLLDRPGN-EKLALLLPIGYPALDCTVPNLKRKDIEDIIVE 253 (254)
Q Consensus 210 ~~v~~~Lglp~~-~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~ 253 (254)
+.++++||+|++ +.++++++||||++ . +..+|+|++|++++
T Consensus 130 ~~~~~~l~lp~~~~~~~~~i~lGyp~~-~--~~~~R~~~~e~v~~ 171 (178)
T 3e39_A 130 ATLLPALALDPARLSFEAAIAAGHPAQ-N--GSSSRRPLAELLLE 171 (178)
T ss_dssp HHHHHHTTCCTTTEEEEEEEEEESBSS-C--CCCCCCCHHHHBSS
T ss_pred HHHHHHhCcCCCceEEEEEEEEeccCC-C--CCCCCCCHHHEEEe
Confidence 899999999999 99999999999983 2 24589999999875
No 19
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative nitroreductase YDFN, structural genomics, center for structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus subtilis}
Probab=100.00 E-value=1.3e-37 Score=261.60 Aligned_cols=171 Identities=19% Similarity=0.310 Sum_probs=140.6
Q ss_pred HHHHHHHHHhccccCCCC-CCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccc
Q psy144 55 SEEFYQLMNARRTVRFFS-DEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKE 133 (254)
Q Consensus 55 ~~~~~e~i~~RRSvR~F~-~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 133 (254)
..++.++|++|||||+|+ +++||.++|++||++|++|||++|+|||+|+||++++.+++|.+.+.
T Consensus 13 ~~~~~~~i~~RrSvR~f~~~~~V~~e~l~~il~aa~~APS~~N~Qpw~f~vv~~~~~~~~l~~~~~-------------- 78 (218)
T 3bem_A 13 MAEFTHLVNERRSASNFLSGHPITKEDLNEMFELVALAPSAFNLQHTKYVTVLDQDVKEKLKQAAN-------------- 78 (218)
T ss_dssp HHHHHHHHHHCCCCSCCCSSCCCCHHHHHHHHHHHTTSCCGGGCCCEEEEEECCHHHHHHHHHTTT--------------
T ss_pred HHHHHHHHHhCchhhccCCCCCCCHHHHHHHHHHHHHCcCcCCCCCeEEEEECCHHHHHHHHHhcc--------------
Confidence 468999999999999999 59999999999999999999999999999999999988888876431
Q ss_pred ccccchhhhhhHHhhhhcCCCeEEEEEeecCCcc---------------c-c----------------ccccccchhhcc
Q psy144 134 WTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFK---------------E-E----------------GKRKKHYYHEMS 181 (254)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~---------------~-~----------------~~~~~~~~~~~~ 181 (254)
.+..+.+||.+++++.+..... + . .......+...+
T Consensus 79 ------------~~~~~~~a~~~iv~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 146 (218)
T 3bem_A 79 ------------GQYKVVSSSAVLLVLGDKQAYQQAADIYEGLKVLGILNKQEYDHMVQDTVSFYENRGEQFKRDEAIRN 146 (218)
T ss_dssp ------------TCTHHHHSSEEEEEEEETTGGGGHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ------------CCCccCCCCeEEEEEecchhhhhhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 1234568899988887643210 0 0 001112356789
Q ss_pred HHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcCCCCCceEEEEEeeccC--CCCCCCCCCCCCCcccceEeC
Q psy144 182 VSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYP--ALDCTVPNLKRKDIEDIIVEF 254 (254)
Q Consensus 182 ~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp~~~~~~~~l~vGyp--~~~~~~p~~~Rkpl~ei~~~~ 254 (254)
+|+++|||+|+|+++||||||+++++. ++++++||+|+++.++++++|||| ++. .+..+|+|++|+++|+
T Consensus 147 ~g~a~~nl~LaA~~lGLgsc~~~~~~~-~~v~~~L~lp~~~~~~~~i~lGy~~~~~~--~~~~~R~~~~e~v~~~ 218 (218)
T 3bem_A 147 ASLSAMMFMLSAAAAGWDTCPMIGFDA-EAVKRILNIDDQFEVVMMITIGKEKTESR--RPRGYRKPVNEFVEYM 218 (218)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCSCH-HHHHHHHTCCTTEEEEEEEEEECCCGGGC--CCCCCCCCGGGTEEEC
T ss_pred HHHHHHHHHHHHHHcCCCcccccCcCH-HHHHHHhCCCCCceeEEEEEecCCccccc--CCCCCCCCHHHheeeC
Confidence 999999999999999999999999865 899999999999999999999999 443 2346899999999874
No 20
>3kwk_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structur genomics, joint center for structural genomics, JCSG; HET: MSE FMN; 1.54A {Bacteroides thetaiotaomicron vpi-5482}
Probab=100.00 E-value=1.9e-37 Score=252.45 Aligned_cols=162 Identities=24% Similarity=0.342 Sum_probs=138.7
Q ss_pred cHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccc
Q psy144 54 RSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKE 133 (254)
Q Consensus 54 ~~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 133 (254)
..|+++++|++|||+|+|++++|+.++|++|+++|++|||++|+|||+|+||++++.+++|.+.+.
T Consensus 8 ~~~~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~APs~~n~qp~~~~vv~~~~~~~~l~~~~~-------------- 73 (175)
T 3kwk_A 8 TGNAALDNIFERKSVRTYLNKGVEKEKIDLMLRAGMSAPSGKDVRPWEFVVVSDRAKLDSMAAALP-------------- 73 (175)
T ss_dssp CCCHHHHHHHHCCBCCCBCSCCCCHHHHHHHHHHHTTSCCGGGCCCEEEEEECCHHHHHHHHHHCT--------------
T ss_pred CchHHHHHHHhCcCccCCCCCCCCHHHHHHHHHHHHHCcCccCCCCeEEEEEeCHHHHHHHHHhcc--------------
Confidence 457999999999999999999999999999999999999999999999999999888887776431
Q ss_pred ccccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCC---hH
Q psy144 134 WTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNA---GP 210 (254)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~---~~ 210 (254)
.+..+.+||++|+++.+... ..+...++|+++|||+|+|+++||||||+|++.. .+
T Consensus 74 ------------~~~~~~~Ap~~iv~~~~~~~---------~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~ 132 (175)
T 3kwk_A 74 ------------YAKMLTQARNAIIVCGDSAR---------SFYWYLDCSAAAQNILLAAESMGLGAVWTAAYPYEDRME 132 (175)
T ss_dssp ------------TCGGGGGCSEEEEEEEETTT---------CTTHHHHHHHHHHHHHHHHHHTTCEECCEECTTCHHHHH
T ss_pred ------------cchhhhcCCEEEEEEEeCcc---------ccchHHHHHHHHHHHHHHHHHcCCCeEEEccccccchHH
Confidence 13567899999999987642 1245779999999999999999999999998864 36
Q ss_pred HHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEe
Q psy144 211 ALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE 253 (254)
Q Consensus 211 ~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~ 253 (254)
+++++||+|+++.++++++||||++... .++++.++++++
T Consensus 133 ~~~~~l~lp~~~~~~~~i~lGyp~~~~~---~~~r~~~~~v~~ 172 (175)
T 3kwk_A 133 VVRKYTHLPENILPLCVIPFGYPATKEQ---PKQKYDEKKIHY 172 (175)
T ss_dssp HHHHHHTCCTTEEEEEEEEEESBSSCCC---CCCCCCGGGCCS
T ss_pred HHHHHhCcCCCcEEEEEEEEeccCCCCC---CCCCCCcCcEEe
Confidence 8999999999999999999999988653 234566777764
No 21
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} SCOP: d.90.1.1
Probab=100.00 E-value=3.2e-38 Score=262.11 Aligned_cols=175 Identities=19% Similarity=0.247 Sum_probs=141.7
Q ss_pred cHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCH-HHHHHHHHHHHHhhhhhhhhhhcc
Q psy144 54 RSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDK-DMKAKIRDIVESEERINYDKRMGK 132 (254)
Q Consensus 54 ~~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~-~~~~~l~~~~~~~~~~~~~~~~~~ 132 (254)
..+++.++|++|||+|+|++++|+.++|++||++|++|||++|+|||+|+||+++ +.++++...+
T Consensus 9 ~~~~~~~~i~~RrS~R~f~~~~v~~e~l~~il~aa~~APS~~n~Qpw~f~vv~~~~~~~~~l~~~~-------------- 74 (200)
T 2fre_A 9 SEYPVDPLFLDRWSPRAFDGSPMPKEHLLTILDAAHWAPSASNHQPWRFVYAHKDSEDWPLFVELL-------------- 74 (200)
T ss_dssp CSSCCCTHHHHCCCCCCBCCCCCCHHHHHHHHHHHHTCCCGGGCCCEEEEEEETTSTTHHHHHHTB--------------
T ss_pred CCCcHHHHHHhCcCccccCCCCCCHHHHHHHHHHHHhCcCcCCCCCEEEEEEeCcHHHHHHHHHHH--------------
Confidence 4467899999999999999999999999999999999999999999999999997 5555554321
Q ss_pred cccccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHH
Q psy144 133 EWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPAL 212 (254)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v 212 (254)
..+.+.++.+||++|+++.+..............+..+|+|+++|||+|+|+++||||||+++++. +.+
T Consensus 75 ----------~~~~~~~~~~ap~~iv~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~-~~~ 143 (200)
T 2fre_A 75 ----------MEGNQKWAKNASVLLFVISRDHTISHEGEKKPSATHSFDAGAAWFSLAMQAHLLGYHAHGMGGIFK-DRI 143 (200)
T ss_dssp ----------CHHHHHHHTTSSEEEEEEEESEEECTTCCEEECSSHHHHHHHHHHHHHHHHHHTTCEEEEECCBCH-HHH
T ss_pred ----------HhhhhHHHhcCCEEEEEEEecccccCcccccccchhhHHHHHHHHHHHHHHHHCCcceeeEcccCH-HHH
Confidence 012245678999999999875321000001223467789999999999999999999999999875 899
Q ss_pred HhhcCCCCCceEEEEEeeccCCCCCC--------CCCCCCCCcccceEe
Q psy144 213 RTLLDRPGNEKLALLLPIGYPALDCT--------VPNLKRKDIEDIIVE 253 (254)
Q Consensus 213 ~~~Lglp~~~~~~~~l~vGyp~~~~~--------~p~~~Rkpl~ei~~~ 253 (254)
+++||+|+++.++++++||||++... ....+|+|+++++++
T Consensus 144 ~~~l~lp~~~~~~~~i~lGy~~~~~~~~~~~~~~~~~~~R~~~~e~~~~ 192 (200)
T 2fre_A 144 VEKLDIPDGFKVEAGVAIGTLTDKSILPDDLAEREVPSKRVPLADVAFE 192 (200)
T ss_dssp HHHTTCCTTEEEEEEEEEECBCCGGGSCHHHHHTCSCCCCCCGGGTEEE
T ss_pred HHHcCCCCCceEEEEEEEeccCCcccCchhhhhccCCCCCcCHHHHhhh
Confidence 99999999999999999999987531 124579999999875
No 22
>3ek3_A Nitroreductase; YP_211706.1, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc 9343}
Probab=100.00 E-value=5.3e-37 Score=252.47 Aligned_cols=179 Identities=22% Similarity=0.289 Sum_probs=139.0
Q ss_pred HHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccc
Q psy144 56 EEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (254)
++++++|++|||+|+|++++|+.|+|++||++|++|||++|+|||+|+||++++.+++|.+.+...... ....+.
T Consensus 5 ~~~~~~i~~RrSiR~f~~~~v~~e~l~~il~aa~~APs~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~-----~~~~~~ 79 (190)
T 3ek3_A 5 NEVLETIKARRSVRAYDRKQIPADDLNAILEAGAYAPSGMHYETWHFTAVCNTVKLEELNERIKGAFAK-----SDDKHL 79 (190)
T ss_dssp CHHHHHHHHCCBCCCBCSCCCCHHHHHHHHHHHHTSCCGGGCCCCEEEEECCHHHHHHHHHHHHHHHHT-----CCCHHH
T ss_pred HHHHHHHHhchhhhcCCCCCCCHHHHHHHHHHHHhCCCcCCCCCeEEEEEECHHHHHHHHHHHHHHHHh-----cccHHH
Confidence 589999999999999999999999999999999999999999999999999998888898876542110 000000
Q ss_pred ccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCC---ChHH-
Q psy144 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLN---AGPA- 211 (254)
Q Consensus 136 ~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~---~~~~- 211 (254)
...........+.+||++|+++.+... .+...|+|+++||++|+|+++||||||+|++. +.+.
T Consensus 80 ---~~~~~~~~~~~~~~Ap~~i~~~~~~~~----------~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~ 146 (190)
T 3ek3_A 80 ---RERGHSETYCCYYHAPTLVIVSNEPKQ----------WWAGMDCACAIENMFLAATSLGIASCWINQLGTTCDDPEV 146 (190)
T ss_dssp ---HHHHTCSSCCTTTTCSEEEEEEECSSS----------TTHHHHHHHHHHHHHHHHHHTTCEEEEECTTTTTTTSHHH
T ss_pred ---HHHhhccccchhcCCCeEEEEEecCCC----------CccHhHHHHHHHHHHHHHHHCCCceEEeccchhhccChhH
Confidence 000000001357899999999987542 35678999999999999999999999999742 2243
Q ss_pred --HHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEeC
Q psy144 212 --LRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254 (254)
Q Consensus 212 --v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~~ 254 (254)
++++||+|+++.++++++||||+...+ ..++++.+++++|+
T Consensus 147 ~~~~~~l~lp~~~~~~~~l~lGyp~~~~~--~~~~R~~~~~v~~~ 189 (190)
T 3ek3_A 147 RAYLTSLGVPENHKVYGCVALGYKAEGAL--LKEKTVKAGTITIV 189 (190)
T ss_dssp HHHHHHHTCCTTCEEEEEEEEECBCTTCC--CCCCCCCTTCCCCC
T ss_pred HHHHHHcCCCCCcEEEEEEEEeccCCCCC--CCCCcCCCCCeEEc
Confidence 899999999999999999999987533 23444557777764
No 23
>3gfa_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN GOL; 1.35A {Clostridium difficile 630}
Probab=100.00 E-value=3.4e-37 Score=254.79 Aligned_cols=190 Identities=18% Similarity=0.251 Sum_probs=138.8
Q ss_pred HHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhh-hhhhhhhhccccc
Q psy144 57 EFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEE-RINYDKRMGKEWT 135 (254)
Q Consensus 57 ~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 135 (254)
+|+++|++|||+|+|+++||++|+|++||++|++|||++|+|||+|+||++++.. ++.+.+.... ...........+.
T Consensus 2 ~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~APS~~n~Qpw~~~vv~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~ 80 (198)
T 3gfa_A 2 MISDSISKRRSIRKYKNQSISHETIEKIIEAGINAPSSKNRQPWRFVVITEKEKE-SMLKAMSKGIQNEINDNGLLPGSR 80 (198)
T ss_dssp CHHHHHHHCCBCCCBCSCCCCHHHHHHHHHHHHTSCCGGGCCCEEEEEECTTTHH-HHHHHHHHHHHHHHTTCSSCGGGG
T ss_pred hHHHHHHhchhhhcCCCCCCCHHHHHHHHHHHHhCCCCCCCCCeEEEEEeChHHH-HHHHHHHHHHhhcccccccChhhH
Confidence 4789999999999999999999999999999999999999999999999998753 3333322210 0000000001111
Q ss_pred ccchhhhhhHHhhhhcCCCeEEEEEeecCCccccc----cccccchhhccHHHHHHHHHHHHHHcCCccccc--cCCCCh
Q psy144 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEG----KRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTS--TPLNAG 209 (254)
Q Consensus 136 ~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~----~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~--~~~~~~ 209 (254)
..+.. ..+.+..+.+||++|+++.+........ ......+...|+|+++|||+|+|+++||||||+ +.++.
T Consensus 81 ~~~~~--~~~~~~~~~~Ap~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~- 157 (198)
T 3gfa_A 81 QHIAG--ANYTVEIMKQAPVTIFILNILGKSPLEKLSPEERFYEMANMQSIGAAIQNMSLTAVELGLGSLWICDVYFAY- 157 (198)
T ss_dssp GGHHH--HHHHHHHHHHSSEEEEEEETTCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECGGGGGH-
T ss_pred HHHHH--HHHHhhhhhCCCEEEEEEEcCcccchhhccccccccchhhHHHHHHHHHHHHHHHHHCCCeeeeecCcccCc-
Confidence 11110 1122567889999999998764321110 111123556899999999999999999999999 45554
Q ss_pred HHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEeC
Q psy144 210 PALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254 (254)
Q Consensus 210 ~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~~ 254 (254)
++++++||+|++ ++++++||||++... ..+|+|++|+++|.
T Consensus 158 ~~v~~~l~lp~~--~~~~i~lGyp~~~~~--~~~R~~~~e~v~~~ 198 (198)
T 3gfa_A 158 RELCEWLNTDSQ--LVAAISLGYPDEEPS--RRPRLQLSDVTEWR 198 (198)
T ss_dssp HHHHHHHTCSSE--EEEEEEEECBSCCCC--CCCCCCHHHHEEEC
T ss_pred HHHHHHhCCCcc--eEEEEEEecCCCCCC--CCCCCCHHHceEeC
Confidence 899999999987 999999999987643 45899999999873
No 24
>3pxv_A Nitroreductase; flavoprotein, FMN-dependent, joint center for structural genomics, protein structure initiative, PSI-biology; HET: MSE FMN; 2.30A {Desulfitobacterium hafniense}
Probab=100.00 E-value=4.8e-37 Score=252.55 Aligned_cols=178 Identities=16% Similarity=0.216 Sum_probs=139.5
Q ss_pred HHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccc
Q psy144 56 EEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (254)
|+++++|++|||+|+|++++||+++|++||++|++|||++|+|||+|+||++++.+++|.+.+....... ..+..+.
T Consensus 4 ~~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~APs~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~---~~~~~~~ 80 (189)
T 3pxv_A 4 NETLKVIAERYSCRDFKNEMPSDELLQAIAEAAIQAPSGMNRQAWRVIVVKNKELMQEMEAEGLAYLAGM---EDQSSYN 80 (189)
T ss_dssp CHHHHHHHHCCCCCCBCSCCCCHHHHHHHHHHHTTCCCGGGCCCBCEEEECCHHHHHHHHHHHHHHHHTS---SSCHHHH
T ss_pred HHHHHHHHhCeehhcCCCCCCCHHHHHHHHHHHHhCCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHhc---ccCcHHH
Confidence 6899999999999999999999999999999999999999999999999999988899988764321100 0000000
Q ss_pred ccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCC-------CC
Q psy144 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPL-------NA 208 (254)
Q Consensus 136 ~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~-------~~ 208 (254)
... ......+.+||++|+++.+... ..+...|+|+++||++|+|+++||||||+|+. .+
T Consensus 81 ---~~~--~~~~~~~~~Ap~~ivv~~~~~~---------~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~ 146 (189)
T 3pxv_A 81 ---RIM--ERGGRLFYGAPCMIVVPIDPTQ---------YGPALVDCGILCQTIALAATSLGIANIMCGYTGLAFASGLR 146 (189)
T ss_dssp ---HHH--HTTSCTTTTCSEEEEEEECGGG---------HHHHHHHHHHHHHHHHHHHHHTTCEEEECGGGGGGGTTSTT
T ss_pred ---HHH--hcccCccCCCCEEEEEEecCCC---------CcchhhhHHHHHHHHHHHHHHCCCceehhccHHHhhccccc
Confidence 000 0112367899999999987532 12337899999999999999999999999963 23
Q ss_pred hHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEeC
Q psy144 209 GPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254 (254)
Q Consensus 209 ~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~~ 254 (254)
.++++++||+|+++.++++++||||+...+ +..+| +++++|+
T Consensus 147 ~~~~~~~l~lp~~~~~~~~i~lGyp~~~~~-~~~~R---~~~v~~~ 188 (189)
T 3pxv_A 147 AEEFSKRLGFPEGYAFGCSVLLGHANTTKP-PHVPD---KDKITYV 188 (189)
T ss_dssp HHHHHHHHTCCTTCEEEEEEEEECBSSCCC-CCCCC---GGGEEEE
T ss_pred hHHHHHHcCcCCCcEEEEEEEEecCCCCCC-CCCCC---CCCeEEe
Confidence 489999999999999999999999988632 22345 8888873
No 25
>3n2s_A NADPH-dependent nitro/flavin reductase; alpga-beta-alpha sandwich, oxidoreductase; HET: FMN; 1.95A {Bacillus subtilis} SCOP: d.90.1.0
Probab=100.00 E-value=8.6e-38 Score=268.18 Aligned_cols=170 Identities=17% Similarity=0.244 Sum_probs=143.0
Q ss_pred HHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccc
Q psy144 56 EEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (254)
++++++|.+|||||+|+++|||.++|++||++|++|||++|+|||+|++|++++.+++|.+++.
T Consensus 2 ~~~~~~i~~RRSiR~F~~~~V~~e~L~~il~aA~~APS~~N~Qpw~~ivv~d~~~~~~L~~~~~---------------- 65 (249)
T 3n2s_A 2 NNTIETILNHRSIRSFTDQLLTAEEIDTLVKSAQAASTSSYVQAYSIIGVSDPEKKRELSVLAG---------------- 65 (249)
T ss_dssp CHHHHHHHTCCCCCCBCSCCCCHHHHHHHHHHHHTSCCGGGCCCEEEEEECCHHHHHHHHHHTT----------------
T ss_pred hHHHHHHHhCcccccCCCCCCCHHHHHHHHHHHHhCCCCCCCcCeEEEEEeCHHHHHHHHHhhc----------------
Confidence 5799999999999999999999999999999999999999999999999999998888887641
Q ss_pred ccchhhhhhHHhhhhcCCCeEEEEEeecCCccc----cccc--------cccchhhccHHHHHHHHHHHHHHcCCccccc
Q psy144 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKE----EGKR--------KKHYYHEMSVSLACGIMLAAIQYCGLVTLTS 203 (254)
Q Consensus 136 ~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~----~~~~--------~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~ 203 (254)
.+.++.+||++|+++.+.++... .+.. ....+...|+|+++||++|+|+++||||||+
T Consensus 66 ----------~q~~~~~ap~~iv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dag~a~qnl~LaA~slGLgsc~i 135 (249)
T 3n2s_A 66 ----------NQPYVEKNGHFFVFCADLYRHQQLAEEKGEHISELLENTEMFMVSLIDAALAAQNMSIAAESMGLGICYI 135 (249)
T ss_dssp ----------SCGGGTSSSEEEEEEEECHHHHHHHHHTTCCCGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ----------CchhhHhCcchhhhhhhhHHHHHHHHHcCCchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHCCCCEeee
Confidence 13567899999999987643210 0000 0012357899999999999999999999999
Q ss_pred cCCC-ChHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEe
Q psy144 204 TPLN-AGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE 253 (254)
Q Consensus 204 ~~~~-~~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~ 253 (254)
|++. +.++++++||||+++.++++++||||+.... ..+|+|+++++++
T Consensus 136 g~~~~~~~~v~~~L~lp~~~~~~~~l~lGyp~~~~~--~~~R~p~~~vv~~ 184 (249)
T 3n2s_A 136 GGIRNELDKVTEVLQTPDHVLPLFGLAVGHPANLSG--KKPRLPKQAVYHE 184 (249)
T ss_dssp GGGGGGHHHHHHHHTCCTTEEEEEEEEEECBSCCCC--CCCCCCHHHHEEE
T ss_pred ccccccHHHHHHHhCcCCCceEEEEEEEeeeCCCCC--CCCCCCHHHeEEE
Confidence 9873 4589999999999999999999999987653 3579999999885
No 26
>2i7h_A Nitroreductase-like family protein; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE FMN; 2.30A {Bacillus cereus}
Probab=100.00 E-value=3e-37 Score=253.50 Aligned_cols=181 Identities=18% Similarity=0.217 Sum_probs=143.0
Q ss_pred cHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccc
Q psy144 54 RSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKE 133 (254)
Q Consensus 54 ~~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 133 (254)
..|++.++|++|||+|+|++++|+.++|++||++|++|||++|+|||+|+||++++ +++|.+.+..... ......
T Consensus 6 ~~m~~~~~i~~RrS~R~f~~~~v~~e~l~~il~aa~~APS~~n~qpw~f~vv~~~~-~~~l~~~~~~~~~----~~~~~~ 80 (189)
T 2i7h_A 6 TYTSIANVIKERRSVRTFTDKAVEKDLLIELLNDATWAPNHKHREPWNCKLYIGEG-RKKLVDAVLNSFT----EEERAK 80 (189)
T ss_dssp ECCCHHHHHHHCCBCCCCCSCCCCHHHHHHHHHHHTTSCCGGGCCCCEEEEEEGGG-HHHHHHHHHHTSC----HHHHHH
T ss_pred HHHHHHHHHHhcccHhhhCCCCcCHHHHHHHHHHHHhCCCCCCcCCeEEEEECcHH-HHHHHHHHHHHHh----ccCchH
Confidence 35789999999999999999999999999999999999999999999999999985 6777776532110 000000
Q ss_pred ccccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccC-CCChHHH
Q psy144 134 WTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTP-LNAGPAL 212 (254)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~-~~~~~~v 212 (254)
| ....+..+.+||++|+++.+.... .....+...++|+++||++|+|+++||||||+++ +...+++
T Consensus 81 ~--------~~~~~~~~~~ap~~i~~~~~~~~~-----~~~~~~~~~~~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~ 147 (189)
T 2i7h_A 81 R--------GKILSDRFLSTPAQIVVYMNEDPR-----QIQRDEDYAATCAFMQNFQLLAWERGLGCVWKSGGLNYNPLF 147 (189)
T ss_dssp H--------HHHHHHHHHTSSEEEEEEEECCSS-----HHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEECSGGGGCHHH
T ss_pred H--------HHHHHhHHhcCCEEEEEEEecCCC-----CCchHHHHHHHHHHHHHHHHHHHHCCCeeEEecCCccCCHHH
Confidence 0 011245678999999998875421 1112245678999999999999999999999986 5344899
Q ss_pred HhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEeC
Q psy144 213 RTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254 (254)
Q Consensus 213 ~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~~ 254 (254)
+++||+|+++.++++++||||++.. +..+|+|++++++|+
T Consensus 148 ~~~l~lp~~~~~~~~i~lGy~~~~~--~~~~R~~~~e~v~~~ 187 (189)
T 2i7h_A 148 IEGIGLTRGQRIVGILHIGYFDKAP--EGKARTPITEKMEII 187 (189)
T ss_dssp HHHTTCCTTEEEEEEEEEEECSSCC--CCCCCCCGGGSEEEE
T ss_pred HHHhCcCCCCeEEEEEEEeCCCCCC--CCCCCCCHHHheeec
Confidence 9999999999999999999998753 246899999999873
No 27
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A*
Probab=100.00 E-value=2.2e-37 Score=259.25 Aligned_cols=177 Identities=15% Similarity=0.269 Sum_probs=141.9
Q ss_pred HHHHHHHHhccccCCCC-CCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccc
Q psy144 56 EEFYQLMNARRTVRFFS-DEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEW 134 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~-~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 134 (254)
|++.++|++|||+|+|+ +++||.++|++||++|++|||++|+|||+|+||++++.+++|.+.+...
T Consensus 3 m~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~aa~~APS~~n~Qpw~f~vv~~~e~~~~l~~~~~~~------------- 69 (218)
T 1vfr_A 3 HPIIHDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHDSFANM------------- 69 (218)
T ss_dssp CHHHHHHHHCCBCSSBCTTCCCCHHHHHHHHHHHHTCCCGGGCCCEEEEEECSHHHHHHHHHTTSSS-------------
T ss_pred ccHHHHHHhhhhhhhcCCCCCCCHHHHHHHHHHHHhCcccCCCCCeEEEEecCHHHHHHHHHHhccc-------------
Confidence 67999999999999999 7899999999999999999999999999999999998888887754110
Q ss_pred cccchhhhhhHHhhhhcCCCeEEEEEeecCCccc-----------cc-----------------------cccccchhhc
Q psy144 135 TTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKE-----------EG-----------------------KRKKHYYHEM 180 (254)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~-----------~~-----------------------~~~~~~~~~~ 180 (254)
+ .+.+..+.+||++|+++.+...... .+ ......+...
T Consensus 70 ---~-----~~~~~~~~~a~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 141 (218)
T 1vfr_A 70 ---H-----QFNQPHIKACSHVILFANKLSYTRDDYDVVLSKAVADKRITEEQKEAAFASFKFVELNCDENGEHKAWTKP 141 (218)
T ss_dssp ---C-----GGGTHHHHHSSEEEEEEEESCCCHHHHHHHHHHHHHTTSSCHHHHHHHGGGGHHHHHTCCTTSCCHHHHHH
T ss_pred ---h-----hcCchhhcCCCEEEEEEECCcccHHHHHHHHHHHHhhcccchHHHHHHhhHHHHHHHhcCCHHHHHHHHHH
Confidence 0 0124456789999988877532100 00 0011234557
Q ss_pred cHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcCCC-CCceEEEEEeeccCC-CCCC--CCCCCCCCcccceEeC
Q psy144 181 SVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRP-GNEKLALLLPIGYPA-LDCT--VPNLKRKDIEDIIVEF 254 (254)
Q Consensus 181 ~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp-~~~~~~~~l~vGyp~-~~~~--~p~~~Rkpl~ei~~~~ 254 (254)
++|+++|||+|+|+++||||||+|+++. ++++++||+| +++.++++++||||+ .... .+..+|+|++|+++++
T Consensus 142 ~~g~a~~nl~LaA~~~Glgs~~~~~~~~-~~v~~~l~lp~~~~~~~~~i~lGy~~~~~~~~~~~~~~R~~~~e~~~~~ 218 (218)
T 1vfr_A 142 QAYLALGNALHTLARLNIDSTTMEGIDP-ELLSEIFADELKGYECHVALAIGYHHPSEDYNASLPKSRKAFEDVITIL 218 (218)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECCSCH-HHHHHHTTTTTTTEEEEEEEEEECBCTTTCGGGGSCCCCCCHHHHEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCcccccccCH-HHHHHHhCCCcccceEEEEEEeecCCccccccccCCCCCCCHHHeeeeC
Confidence 8999999999999999999999999865 8999999999 999999999999998 4321 1245799999999885
No 28
>2h0u_A NADPH-flavin oxidoreductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: FMN; 1.90A {Helicobacter pylori}
Probab=100.00 E-value=2.2e-37 Score=259.24 Aligned_cols=172 Identities=14% Similarity=0.204 Sum_probs=129.7
Q ss_pred HHHHHHHHHhccccCCCC-CCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccc
Q psy144 55 SEEFYQLMNARRTVRFFS-DEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKE 133 (254)
Q Consensus 55 ~~~~~e~i~~RRSvR~F~-~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 133 (254)
.|++.++|++|||+|+|+ +++||.++|++||++|++|||++|+|||+|+||++++.+++|.+.+..
T Consensus 3 ~m~~~~~i~~RrS~R~f~~~~~v~~e~l~~il~aa~~APS~~n~Qpw~~~vv~~~~~~~~l~~~~~~------------- 69 (217)
T 2h0u_A 3 REQVVALQHQRFAAKKYDPNRRISQKDWEALVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWG------------- 69 (217)
T ss_dssp HHHHHHHHHHCCBCCCBCTTCCCCHHHHHHHHHHHHTCCCGGGCCCEEEEECCC--------------------------
T ss_pred hhHHHHHHHHhHHHHhcCCCCCCCHHHHHHHHHHHhhCCcccCCCCeEEEEEeCHHHHHHHHHHHhc-------------
Confidence 578999999999999999 899999999999999999999999999999999999888888775420
Q ss_pred ccccchhhhhhHHhhhhcCCCeEEEEEeecCCccc--c----------------------------------ccccccch
Q psy144 134 WTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKE--E----------------------------------GKRKKHYY 177 (254)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~--~----------------------------------~~~~~~~~ 177 (254)
.+..+.+||++++++.+...... . .......+
T Consensus 70 ------------~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (217)
T 2h0u_A 70 ------------ALFGLEGASHFVIYLARKGVTYDSDYVKKVMHEVKKRDYDTNSRFAQIIKNFQENDMKLNSERSLFDW 137 (217)
T ss_dssp -------------------CCEEEEEEEESCCCTTCHHHHHHHHHTTCCCCCTTSHHHHHHHHHHHTTSCCCSHHHHHHH
T ss_pred ------------ChhhhcCCCEEEEEEEcCCcccchHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 13456789999988877543100 0 00011234
Q ss_pred hhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhc---C-C-CCCceEEEEEeeccCCCCCCCCCCCCCCcccceE
Q psy144 178 HEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLL---D-R-PGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIV 252 (254)
Q Consensus 178 ~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~L---g-l-p~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~ 252 (254)
...++|+++|||+|+|+++||||||+|+++. ++++++| | + |+++.++++++||||+.... ..+|+|++++++
T Consensus 138 ~~~d~g~a~~~l~LaA~~~Glgsc~~~~~~~-~~v~~~l~~~~~l~p~~~~~~~~i~lGy~~~~~~--~~~R~~~~e~~~ 214 (217)
T 2h0u_A 138 ASKQTYIQMANMMMAAAMLGIDSCPIEGYDQ-EKVEAYLEEKGYLNTAEFGVSVMACFGYRNQEIT--PKTRWKTEVIYE 214 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEECCSCH-HHHHHHHHHHTSCCTTTEEEEEEEEEECBSSCCC--CCCCCCHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCcCcCH-HHHHHHHhhcCCCCccccceEEEEEeeccCCCCC--CCCCCCHHHeee
Confidence 5689999999999999999999999999864 8999999 9 8 78999999999999987643 458999999988
Q ss_pred eC
Q psy144 253 EF 254 (254)
Q Consensus 253 ~~ 254 (254)
|+
T Consensus 215 ~~ 216 (217)
T 2h0u_A 215 VI 216 (217)
T ss_dssp CC
T ss_pred ec
Confidence 74
No 29
>2hay_A Putative NAD(P)H-flavin oxidoreductase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE FMN; 2.11A {Streptococcus pyogenes serotype M1}
Probab=100.00 E-value=4.1e-37 Score=259.00 Aligned_cols=173 Identities=22% Similarity=0.320 Sum_probs=141.8
Q ss_pred HHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccc
Q psy144 55 SEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEW 134 (254)
Q Consensus 55 ~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 134 (254)
.|++.++|++|||+|+|++++||.++|++||++|++|||++|+|||+|+||++++.+++|.+++..
T Consensus 9 ~~~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~APS~~n~Qpw~f~vv~~~~~~~~l~~~~~~-------------- 74 (224)
T 2hay_A 9 HHQIQQALHFRTAVRVYKEEKISDEDLALILDAAWLSPSSIGLEGWRFVVLDNKPIKEEIKPFAWG-------------- 74 (224)
T ss_dssp HHHHHHHHHHCCBCCCBCSCCCCHHHHHHHHHHHHTSCCGGGCCCEEEEEECCHHHHHHHGGGCTT--------------
T ss_pred hHHHHHHHHhchhhhccCCCCCCHHHHHHHHHHHHhCccccCCCCeEEEEECCHHHHHHHHHHHhc--------------
Confidence 478999999999999999999999999999999999999999999999999999887777654310
Q ss_pred cccchhhhhhHHhhhhcCCCeEEEEEeecCCcc---------------cc----------------------ccccccch
Q psy144 135 TTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFK---------------EE----------------------GKRKKHYY 177 (254)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~---------------~~----------------------~~~~~~~~ 177 (254)
.+..+.+||.+++++.+..... +. .......+
T Consensus 75 -----------~~~~~~~a~~~iv~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (224)
T 2hay_A 75 -----------AQYQLETASHFILLIAEKHARYDSPAIKNSLLRRGIKEGDGLNSRLKLYESFQKEDMDMADNPRALFDW 143 (224)
T ss_dssp -----------CHHHHHHCSEEEEEEEESCCCTTSHHHHHHHHHTTCCSSSSHHHHHHHHHHHHHTTSCCTTCHHHHHHH
T ss_pred -----------cccccCCCCeEEEEEeccccccCHHHHHHHHHHcCCCChhHHHHHHHHHHHHHhhhhcccCCHHHHHHH
Confidence 1334668888888887643200 00 00112235
Q ss_pred hhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhc---C-CC-CCceEEEEEeeccCCCCCCCCCCCCCCcccceE
Q psy144 178 HEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLL---D-RP-GNEKLALLLPIGYPALDCTVPNLKRKDIEDIIV 252 (254)
Q Consensus 178 ~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~L---g-lp-~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~ 252 (254)
...++|+++|||+|+|+++||||||+|+++. ++++++| | +| +++.++++++||||+++.. ...+|+|++|+++
T Consensus 144 ~~~d~g~a~~nl~LaA~~~Glgsc~~~~~~~-~~v~~~l~~~~~lp~~~~~~~~~i~lGyp~~~~~-~~~~R~~~~e~~~ 221 (224)
T 2hay_A 144 TAKQTYIALGNMMMTAALLGIDTCPIEGFHY-DKVNHILAKHNVIDLEKEGIASMLSLGYRLRDPK-HAQVRKPKEEVMS 221 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEECCSCH-HHHHHHHHHTTSSCTTTEEEEEEEEEECBSSCCS-SCCCCCCGGGTEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccCCCCcCH-HHHHHHHHhcCCCCcccceEEEEEEEeccCCccC-CCCCCCCHHHeee
Confidence 6789999999999999999999999999865 8999999 9 99 9999999999999987643 1458999999998
Q ss_pred eC
Q psy144 253 EF 254 (254)
Q Consensus 253 ~~ 254 (254)
|.
T Consensus 222 ~~ 223 (224)
T 2hay_A 222 VV 223 (224)
T ss_dssp EE
T ss_pred ec
Confidence 73
No 30
>3bm1_A Protein YDJA, nitroreductase; oxidoreductase; HET: FMN; 2.00A {Escherichia coli} PDB: 3bm2_A
Probab=100.00 E-value=8.7e-37 Score=249.04 Aligned_cols=182 Identities=18% Similarity=0.273 Sum_probs=140.5
Q ss_pred HHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccc
Q psy144 56 EEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (254)
|++.++|++|||+|+|++++||.++|++||++|++|||++|+|||+|+||+++ .+++|.+.+...... .
T Consensus 1 m~~~~~i~~RrS~R~f~~~~v~~e~l~~il~aa~~aPS~~n~qpw~~~vv~~~-~~~~l~~~~~~~~~~-----~----- 69 (183)
T 3bm1_A 1 MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGE-GRERFSAVLEQGAIA-----A----- 69 (183)
T ss_dssp CBHHHHHHHCCCCCCEESCCCCHHHHHHHHHHHTTSCCTTSCCCCEEEEEETH-HHHHHHHHHHHHHHH-----H-----
T ss_pred CcHHHHHHhCcChhhcCCCCcCHHHHHHHHHHHHhCCCCCCCCCeEEEEEchh-HHHHHHHHHHHHHhc-----c-----
Confidence 36889999999999999999999999999999999999999999999999998 578888776432110 0
Q ss_pred ccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCC-ChHHHHh
Q psy144 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLN-AGPALRT 214 (254)
Q Consensus 136 ~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~-~~~~v~~ 214 (254)
..........+.++.+||++|+++.+..... .....+..+++|+++|||+|+|+++||||||++++. ..+.+++
T Consensus 70 -~~~~~~~~~~~~~~~~ap~~i~~~~~~~~~~----~~~~~~~~~d~g~a~~~l~LaA~~~Glgs~~~~~~~~~~~~~~~ 144 (183)
T 3bm1_A 70 -GSDDKAIDKARNAPFRAPLIITVVAKCEENH----KVPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVRE 144 (183)
T ss_dssp -TCCHHHHHHHHHGGGGSSEEEEEEECCCSCS----SSCHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCGGGGCHHHHH
T ss_pred -CCCHHHHHHHHhhhccCCEEEEEEEecCCCC----CCCcHHHHHHHHHHHHHHHHHHHHCCCceEEeCCCCccCHHHHH
Confidence 0000001122456789999999987654211 011234568999999999999999999999999763 3489999
Q ss_pred hcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEeC
Q psy144 215 LLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254 (254)
Q Consensus 215 ~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~~ 254 (254)
+||+|+++.++++++||||+.... ...+|+|++|+++++
T Consensus 145 ~l~lp~~~~~~~~i~~Gy~~~~~~-~~~~R~~~~e~~~~~ 183 (183)
T 3bm1_A 145 AFGCREQDKIVGFLYLGTPQLKAS-TSINVPDPTPFVTYF 183 (183)
T ss_dssp HTTCCTTCEEEEEEEEEEECC-------CCCCCGGGEEEC
T ss_pred HhCCCCCCEEEEEEEeecCCCCCC-CCCCCCCHHHhcccC
Confidence 999999999999999999987542 145899999999874
No 31
>3e10_A Putative NADH oxidase; NP_348178.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE FMN EPE; 1.40A {Clostridium acetobutylicum}
Probab=100.00 E-value=5.4e-37 Score=247.91 Aligned_cols=161 Identities=23% Similarity=0.378 Sum_probs=134.9
Q ss_pred HHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccccccc
Q psy144 59 YQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDL 138 (254)
Q Consensus 59 ~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 138 (254)
+++|++|||+|+|++++|+.++|++|+++|++|||++|+|||+|+||++++.+++|.+...
T Consensus 2 l~~i~~RrS~R~f~~~~v~~e~l~~il~aa~~APs~~n~qp~~~~vv~~~~~~~~l~~~~~------------------- 62 (168)
T 3e10_A 2 MDIINNRRSIRNYKGKKVEKEKIEKLLRAAMQAPSAGNQQPWEFIVLEDRENIDKLSNFSK------------------- 62 (168)
T ss_dssp -CHHHHCCBCCCBCSSCCCHHHHHHHHHHHHTSCCGGGCCCEEEEEECCHHHHHHHGGGST-------------------
T ss_pred hhHHhhccccccCCCCCCCHHHHHHHHHHHHhCCCcCCCCCeEEEEEcCHHHHHHHHHhcc-------------------
Confidence 4689999999999999999999999999999999999999999999999887776654320
Q ss_pred hhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCC---hHHHHhh
Q psy144 139 RPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNA---GPALRTL 215 (254)
Q Consensus 139 ~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~---~~~v~~~ 215 (254)
.+.++.+||++|+++.+.... ....+..+++|+++||++|+|+++||||||+|++.. .++++++
T Consensus 63 -------~~~~~~~Ap~~iv~~~~~~~~------~~~~~~~~d~g~a~~~l~LaA~~~Glgs~~~~~~~~~~~~~~~~~~ 129 (168)
T 3e10_A 63 -------YANSLKTAPLAIVLLADEEKM------KISEMWEQDMAAAAENILLEAAYLDLGAVWLGAQPIEERVKNLKEM 129 (168)
T ss_dssp -------TCGGGGGCSEEEEEEEEGGGC------SSGGGHHHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHH
T ss_pred -------cchhhhcCCEEEEEEEccccc------cCcchHHHHHHHHHHHHHHHHHHCCCeEEEEecccccchhHHHHHH
Confidence 135678999999999876421 112356789999999999999999999999998763 3789999
Q ss_pred cCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEe
Q psy144 216 LDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE 253 (254)
Q Consensus 216 Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~ 253 (254)
||+|+++.++++++||||++.... ..+|+|+++ +++
T Consensus 130 l~lp~~~~~~~~i~lGyp~~~~~~-~~~R~~~~~-v~~ 165 (168)
T 3e10_A 130 FNLKSNIKPFCVISVGYPENSENK-FIDRFDAKR-IHI 165 (168)
T ss_dssp TTCCTTEEEEEEEEEECBSSCCCC-CCCCCCGGG-EEE
T ss_pred cCcCCCceEEEEEEEeccCCCCCC-CCCCCChhh-Eee
Confidence 999999999999999999986531 157999999 543
No 32
>3eof_A Putative oxidoreductase; YP_213212.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.99A {Bacteroides fragilis nctc 9343} SCOP: d.90.1.0
Probab=100.00 E-value=2.5e-37 Score=265.11 Aligned_cols=168 Identities=16% Similarity=0.219 Sum_probs=139.2
Q ss_pred HHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccccc
Q psy144 58 FYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTD 137 (254)
Q Consensus 58 ~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (254)
|+++|++|||||+|+++|||.++|++||++|++|||++|+|||+|+||++++.+++|.+++
T Consensus 2 ~~e~i~~RRSvR~F~~~pV~~e~L~~ileaA~~APS~~N~Qpw~fivv~~~e~~~~L~~~~------------------- 62 (248)
T 3eof_A 2 MMDTVKNRRTIRKYQQKDITPDLLNDLLETSFRASTMGGMQLYSVVVTRDAEKKEILSPAH------------------- 62 (248)
T ss_dssp HHHHHHTCCCCCCBCSCCCCHHHHHHHHHHHTTSCCGGGCCCEEEEEECCHHHHHHHTTTT-------------------
T ss_pred hHHHHHhCccccCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCeEEEEEECHHHHHHHHHHh-------------------
Confidence 7899999999999999999999999999999999999999999999999998888776542
Q ss_pred chhhhhhHHhhhhcCCCeEEEEEeecCCcc---------ccccc-cccchhhccHHHHHHHHHHHHHHcCCccccccC-C
Q psy144 138 LRPLKTSWQKEYLTTAPYLVVVFKQTYGFK---------EEGKR-KKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTP-L 206 (254)
Q Consensus 138 ~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~---------~~~~~-~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~-~ 206 (254)
+.+.++.+||++|+++++..... +.... ....++..|+|+++||++|+|+++||||||+|+ .
T Consensus 63 -------~~~~~~~~Ap~~ivv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~dag~a~qnl~LaA~alGLGsc~ig~~~ 135 (248)
T 3eof_A 63 -------FNQPMVKEAPVVLTFCADFRRFCKYCQERNAVPGYGNLMSFLNAAMDTLLVAQTFCTLAEEAGLGICYLGTTT 135 (248)
T ss_dssp -------TTCTHHHHSSEEEEEEEECHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGG
T ss_pred -------cCCCcccCCCEEEEEEEechHhHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecccc
Confidence 11456788999999998754211 00000 001245779999999999999999999999997 2
Q ss_pred CChHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEe
Q psy144 207 NAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE 253 (254)
Q Consensus 207 ~~~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~ 253 (254)
.+.+.++++||||+++.++++++||||++... ..+|+|+++++++
T Consensus 136 ~~~~~v~~~L~lp~~~~~v~~i~lGyp~~~~~--~~~R~p~eevv~~ 180 (248)
T 3eof_A 136 YNPQMIIDALHLPELVFPITTVTVGYPAESPK--QVDRLPIEGIIHE 180 (248)
T ss_dssp TSHHHHHHHHTCCTTEEEEEEEEEECBCCCCC--CCCCCCGGGTEEE
T ss_pred cCHHHHHHHhCcCCCceEEEEEEEeeeCCCCC--CCCCCCHHHEEEE
Confidence 33489999999999999999999999988653 4589999999986
No 33
>2isk_A BLUB; oxidoreductase, flavin, monooxygenase, flavin destructase, vitamin B12, dithionite, charge transfer complex, flavoprotein; HET: FNR; 2.10A {Sinorhizobium meliloti} PDB: 2isj_A* 2isl_A*
Probab=100.00 E-value=2.2e-36 Score=255.89 Aligned_cols=193 Identities=19% Similarity=0.274 Sum_probs=146.6
Q ss_pred HHHHHHHHHhccccC-CCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccc
Q psy144 55 SEEFYQLMNARRTVR-FFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKE 133 (254)
Q Consensus 55 ~~~~~e~i~~RRSvR-~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 133 (254)
.+++.++|++|||+| +|++++|+.++|++||++|++|||++|+|||+|+||++++.+++|.+.+....... .... ..
T Consensus 23 ~~~~~~~i~~RrSvR~~f~~~~v~~e~l~~il~aa~~APS~~n~Qpw~f~vv~~~~~~~~l~~~~~~~~~~~-~~~~-~~ 100 (230)
T 2isk_A 23 RAAVYRAIETRRDVRDEFLPEPLSEELIARLLGAAHQAPSVGFMQPWNFVLVRQDETREKVWQAFQRANDEA-AEMF-SG 100 (230)
T ss_dssp HHHHHHHHHHCCBCSSCCCSCCCCHHHHHHHHHHHHTSCCGGGCCCEEEEEECCHHHHHHHHHHHHHHHHHH-HHTS-CH
T ss_pred HHHHHHHHHhhhccccccCCCCCCHHHHHHHHHHHhhCCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHH-hhhc-CH
Confidence 378999999999999 99999999999999999999999999999999999999988888888754322110 0000 00
Q ss_pred ccccchhhhhhHHhhhhcCCCeEEEEEeecCCcc--ccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHH
Q psy144 134 WTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFK--EEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPA 211 (254)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~--~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~ 211 (254)
| ............+.+||++|+++.+..... ..+......+..+++|+++|||+|+|+++||||||+++++. ++
T Consensus 101 ~---~~~~~~~~~~~~~~~ap~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~lGlgs~~~~~~~~-~~ 176 (230)
T 2isk_A 101 E---RQAKYRSLKLEGIRKAPLSICVTCDRTRGGAVVLGRTHNPQMDLYSTVCAVQNLWLAARAEGVGVGWVSIFHE-SE 176 (230)
T ss_dssp H---HHHHHHHSCCCCTTTSSEEEEEEEETTTTCSSCTTCSSCTTHHHHHHHHHHHHHHHHHHHHTEEEEECCCSCH-HH
T ss_pred H---HHHHHHHHhhhhhhcCCeEEEEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHHCCCceeeecccCH-HH
Confidence 0 000000001124678999999988754321 11111122356789999999999999999999999998875 89
Q ss_pred HHhhcCCCCCceEEEEEeeccCCCCCCCCC------CCCCCcccceEe
Q psy144 212 LRTLLDRPGNEKLALLLPIGYPALDCTVPN------LKRKDIEDIIVE 253 (254)
Q Consensus 212 v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~------~~Rkpl~ei~~~ 253 (254)
++++||||+++.++++++||||++....+. .+|+|++|++++
T Consensus 177 v~~~L~lp~~~~~~~~i~lGy~~~~~~~~~~~~~~~~~R~~~~eiv~~ 224 (230)
T 2isk_A 177 IKAILGIPDHVEIVAWLCLGFVDRLYQEPELAAKGWRQRLPLEDLVFE 224 (230)
T ss_dssp HHHHHTCCTTEEEEEEEEEEECSEECSSCHHHHTTSCCCCCHHHHEEE
T ss_pred HHHHhCCCCCceeEEEEEEeccCcccCCccccccCCcccCCHHHeeee
Confidence 999999999999999999999987654331 579999999876
No 34
>1icr_A Oxygen-insensitive NAD(P)H nitroreductase; alpha-beta, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1 PDB: 1ds7_A* 1icu_A* 1icv_A* 1idt_A* 1oo5_A* 1oo6_A* 1oon_A* 1ooq_A* 1yki_A* 1ylr_A* 1ylu_A* 3hzn_A* 1kqb_A* 1kqc_A* 1kqd_A* 1nec_A*
Probab=100.00 E-value=5.3e-37 Score=256.61 Aligned_cols=177 Identities=17% Similarity=0.265 Sum_probs=140.4
Q ss_pred HHHHHHHHhccccCCCC-CCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccc
Q psy144 56 EEFYQLMNARRTVRFFS-DEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEW 134 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~-~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 134 (254)
|++.++|++|||+|+|+ +++||+++|++||++|++|||++|+|||+|+||++++.+++|.+.+...
T Consensus 1 m~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~aa~~APS~~n~Qpw~~~vv~~~e~~~~l~~~~~~~------------- 67 (217)
T 1icr_A 1 MDIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARVAKSAAGN------------- 67 (217)
T ss_dssp -CHHHHHHHCCBCSCBCTTCCCCHHHHHHHHHHHHHCCCGGGCCCEEEEEECSHHHHHHHHTTSCGG-------------
T ss_pred CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCccccCCCCeEEEEeCCHHHHHHHHHHhhhh-------------
Confidence 46889999999999999 7899999999999999999999999999999999998888877653110
Q ss_pred cccchhhhhhHHhhhhcCCCeEEEEEeecCCccc-----------ccc-------------------------ccccchh
Q psy144 135 TTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKE-----------EGK-------------------------RKKHYYH 178 (254)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~-----------~~~-------------------------~~~~~~~ 178 (254)
+ .+.+..+.+||++++++.+...... .+. .....+.
T Consensus 68 ---~-----~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~ 139 (217)
T 1icr_A 68 ---Y-----VFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWM 139 (217)
T ss_dssp ---G-----GGGHHHHHHSSEEEEEEEESSCCHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred ---h-----hcChhhhcCCCeEEEEEeCCccchHHHHHHHHHHHhhccCCHHHHHHHHHhhHHHHHHHhcCCHHHHHHHH
Confidence 0 0124456789999999887532100 000 0111244
Q ss_pred hccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcCCC-CCceEEEEEeeccCCC-CCC-CCCCCCCCcccceEeC
Q psy144 179 EMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRP-GNEKLALLLPIGYPAL-DCT-VPNLKRKDIEDIIVEF 254 (254)
Q Consensus 179 ~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp-~~~~~~~~l~vGyp~~-~~~-~p~~~Rkpl~ei~~~~ 254 (254)
..++|+++|||+|+|+++||||||+|+++. ++++++||+| +++.++++++||||++ ... .+..+|+|++|+++|+
T Consensus 140 ~~~~g~a~~~l~LaA~~~Glgsc~~~~~~~-~~v~~~l~lp~~~~~~~~~i~lGy~~~~~~~~~~~~~R~~~~e~~~~~ 217 (217)
T 1icr_A 140 AKQVYLNVGNFLLGVAALGLDAVPIEGFDA-AILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV 217 (217)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCBCCSCH-HHHHHHHTHHHHTEEEEEEEEEECBCTTCGGGSSCCCCCCHHHHEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccCcCH-HHHHHHhCCCccCCceEEEEEeccCCccccccCCCCcCCCHHHheeeC
Confidence 568999999999999999999999999865 8999999999 9999999999999974 311 1245799999999885
No 35
>2wzv_A NFNB protein; nitroreductase, oxidoreductase; HET: MSE FMN; 1.75A {Mycobacterium smegmatis} PDB: 2wzw_A*
Probab=100.00 E-value=5.3e-36 Score=253.62 Aligned_cols=190 Identities=18% Similarity=0.281 Sum_probs=141.5
Q ss_pred cHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhh-hhh---
Q psy144 54 RSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINY-DKR--- 129 (254)
Q Consensus 54 ~~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~-~~~--- 129 (254)
..+++.++|++|||+|+|++++||.++|++||++|++|||++|+|||+|+||++++ +++|.+.+........ ...
T Consensus 15 ~~~~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~APS~~n~Qpw~f~vv~~~~-~~~l~~~~~~~~~~~~~~~~~~~ 93 (235)
T 2wzv_A 15 LAQAAERLIKGRRAVRAFRPDEVPEETMRAVFELAGHAPSNSNTQPWHVEVVSGAA-RDRLAEALVTAHAEERVTVDFPY 93 (235)
T ss_dssp HHHHHHHHHHHCCBCCCBCSCCCCHHHHHHHHHHHTTCCCGGGCCCCEEEEECHHH-HHHHHHHHHHHHHTTCCBCSSCC
T ss_pred cHHHHHHHHHhCceecCCCCCCCCHHHHHHHHHHHHhCCcccCCCCcEEEEecCHH-HHHHHHHHHHHHHhcccCccccc
Confidence 45799999999999999999999999999999999999999999999999999987 5677765532110000 000
Q ss_pred hcccccccc----------------------hhhhhhHHhh-hhcCCCeEEEEEeecCCccccccccccchhhccHHHHH
Q psy144 130 MGKEWTTDL----------------------RPLKTSWQKE-YLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLAC 186 (254)
Q Consensus 130 ~~~~~~~~~----------------------~~~~~~~~~~-~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~ 186 (254)
....|...+ ......+.+. .+.+||++|+++.+... ..+...++|+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~~i~~~~~~~~---------~~~~~~d~g~a~ 164 (235)
T 2wzv_A 94 REGLFQGVLQERRADFGSRLYAALGIARDQTDLLQGYNTESLRFYGAPHVAMLFAPNNT---------EARIAGDMGIYA 164 (235)
T ss_dssp CTTSSCHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHTGGGCSEEEEEEEETTC---------CHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHhhcceecCCCEEEEEecCccc---------ccccHHHHHHHH
Confidence 000000000 0000112122 26789999888876431 235678999999
Q ss_pred HHHHHHHHHcCCccccccCC-CChHHHHhhcCCCCCceEEEEEeeccCCCCCCCC--CCCCCCcccceEeC
Q psy144 187 GIMLAAIQYCGLVTLTSTPL-NAGPALRTLLDRPGNEKLALLLPIGYPALDCTVP--NLKRKDIEDIIVEF 254 (254)
Q Consensus 187 ~~l~Laa~a~Glgs~~~~~~-~~~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p--~~~Rkpl~ei~~~~ 254 (254)
|||+|+|+++||||||+|++ ...++++++||+ +++.++++++||||+.+...+ ..+|+|++|+++|+
T Consensus 165 ~nl~LaA~~~Glgsc~~~~~~~~~~~v~~~L~l-~~~~~~~~i~lGy~~~~~~~~~~~~~R~~~~e~v~~~ 234 (235)
T 2wzv_A 165 QTLMLAMTAHGIASCPQALLSFYADTVRAELGV-ENRKLLMGISFGYADDTAAVNGVRIPRAGLSETTRFS 234 (235)
T ss_dssp HHHHHHHHHTTCEEEEEGGGGGBHHHHHHHHTC-CSEEEEEEEEEECBCTTCGGGGCCCCCCCHHHHEEEE
T ss_pred HHHHHHHHHCCCccchhhhhccchHHHHHHcCC-CCcceEEEEEecCCCCccccccCCCCCCCHHHheeec
Confidence 99999999999999999986 345899999999 999999999999998764321 46899999999873
No 36
>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase; HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1
Probab=100.00 E-value=1.3e-36 Score=261.63 Aligned_cols=170 Identities=23% Similarity=0.285 Sum_probs=140.8
Q ss_pred HHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccc
Q psy144 56 EEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (254)
|++.++|.+|||+|+|+++|||.++|++||++|++|||++|+|||+|++|++++.+++|.+++.
T Consensus 2 ~~~~~~i~~RRSiR~F~~~~V~~e~l~~il~aA~~APS~~n~Qpw~~ivv~d~~~~~~L~~~~~---------------- 65 (255)
T 1zch_A 2 NEVIKSLTDHRSIRSYTDEPVAQEQLDQIIEAVQSAPSSINGQQVTVITVQDKERKKKISELAG---------------- 65 (255)
T ss_dssp CHHHHHHHTCCCCCCBCSCCCCHHHHHHHHHHHHHSCCGGGCCCEEEEEECCHHHHHHHHHHTT----------------
T ss_pred hHHHHHHHhCccccCcCCCCCCHHHHHHHHHHHHhCCCcCCCCCEEEEEEcCHHHHHHHHHhhc----------------
Confidence 5789999999999999999999999999999999999999999999999999988888877541
Q ss_pred ccchhhhhhHHhhhhcCCCeEEEEEeecCCccc-----ccc-------ccccchhhccHHHHHHHHHHHHHHcCCccccc
Q psy144 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKE-----EGK-------RKKHYYHEMSVSLACGIMLAAIQYCGLVTLTS 203 (254)
Q Consensus 136 ~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~-----~~~-------~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~ 203 (254)
.+.++.+||++++++.+..+... .+. .....+..+|+|+++||++|+|+++||||||+
T Consensus 66 ----------~q~~~~~ap~~iv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dag~a~qnl~LaA~alGLgsc~i 135 (255)
T 1zch_A 66 ----------GQPWIDQAPVFLLFCADFNRAKIALEDLHDFKMEITNGLESVLVGAVDAGIALGTATAAAESLGLGTVPI 135 (255)
T ss_dssp ----------CCHHHHHSSEEEEEEEECHHHHHHHHHHHCCCCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ----------cchhhhcCCceeEEEEechHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCcEeee
Confidence 13445678999999887542110 000 00112457899999999999999999999999
Q ss_pred cCC-CChHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEe
Q psy144 204 TPL-NAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE 253 (254)
Q Consensus 204 ~~~-~~~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~ 253 (254)
|++ +..++++++||||+++.++++++||||+.... ..+|+|+++++++
T Consensus 136 g~~~~~~~~v~~~L~lp~~~~~~~~l~lGyp~~~~~--~~~R~p~~~vv~~ 184 (255)
T 1zch_A 136 GAVRGNPQELIELLELPKYVFPLSGLVIGHPADRSA--KKPRLPQEAVNHQ 184 (255)
T ss_dssp GGGGSSHHHHHHHTTCCTTEEEEEEEEEECBSCCCC--CCCCCCHHHHSCS
T ss_pred cccccCHHHHHHHhCcCCCceEEEEEEEeccCCCCC--CCCCCCHHHEEEE
Confidence 987 34589999999999999999999999987653 4589999998764
No 37
>1f5v_A Oxygen-insensitive NADPH nitroreductase; flavoprotein, oxidoreduction, nitrocompound, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1
Probab=100.00 E-value=1.9e-36 Score=258.44 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=141.0
Q ss_pred HHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccc
Q psy144 56 EEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (254)
|++.++|.+|||+|+|++++|+.++|++||++|++|||++|+|||+|++|++++.+++|.+++.
T Consensus 2 ~~~~~~i~~RRSiR~f~~~~v~~e~l~~il~aa~~APS~~n~Qpw~~ivv~~~~~~~~l~~~~~---------------- 65 (240)
T 1f5v_A 2 TPTIELICGHRSIRHFTDEPISEAQREAIINSARATSSSSFLQCSSIIRITDKALREELVTLTG---------------- 65 (240)
T ss_dssp CHHHHHHHTCCBCCCBCSCCCCHHHHHHHHHHHHTSCCGGGCCCEEEEECCCHHHHHHHHHHTT----------------
T ss_pred hHHHHHHHhCccccCcCCCCCCHHHHHHHHHHHHhCCCcccCCCeEEEEEeCHHHHHHHHHHhc----------------
Confidence 5789999999999999999999999999999999999999999999999999988888877541
Q ss_pred ccchhhhhhHHhhhhcCCCeEEEEEeecCCccc---c---ccccccchhhccHHHHHHHHHHHHHHcCCccccccCCC-C
Q psy144 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKE---E---GKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLN-A 208 (254)
Q Consensus 136 ~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~---~---~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~-~ 208 (254)
.+.++.+||++++++.+..+... . +......+..+|+|+++||++|+|+++||||||+|++. .
T Consensus 66 ----------~~~~~~~ap~~iv~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~qnl~LaA~~lGLgsc~ig~~~~~ 135 (240)
T 1f5v_A 66 ----------GQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLLLGVVDTAMMAQNALIAAESLGLGGVYIGGLRNN 135 (240)
T ss_dssp ----------SCTHHHHSSEEEEEEEECHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGG
T ss_pred ----------CChhHHcccHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecccccC
Confidence 13456788999998887542110 0 00011234578999999999999999999999999873 4
Q ss_pred hHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEe
Q psy144 209 GPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE 253 (254)
Q Consensus 209 ~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~ 253 (254)
.++++++||||+++.++++++||||++... ..+|+|+++++++
T Consensus 136 ~~~v~~~L~lp~~~~~~~~l~lGyp~~~~~--~~~R~p~~~vv~~ 178 (240)
T 1f5v_A 136 IEAVTKLLKLPQHVLPLFGLCLGWPADNPD--LKPRLPASILVHE 178 (240)
T ss_dssp HHHHHHHTTCCTTEEEEEEEEEECBCCCCC--CCCCCCHHHHEEE
T ss_pred HHHHHHHhCCCCCceEEEEEEEeccCCCCC--CCCCCChhhEEEE
Confidence 589999999999999999999999997643 4589999999875
No 38
>1bkj_A NADPH-flavin oxidoreductase; luminescence, flavoprotein; HET: FMN; 1.80A {Vibrio harveyi} SCOP: d.90.1.1 PDB: 2bkj_A*
Probab=100.00 E-value=2.3e-36 Score=257.91 Aligned_cols=170 Identities=16% Similarity=0.189 Sum_probs=141.1
Q ss_pred HHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccccc
Q psy144 56 EEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWT 135 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (254)
|++.++|.+|||+|+|+++|||.++|+.||++|++|||++|+|||+|++|++++.+++|.+++.
T Consensus 2 ~~~~~~i~~RrSiR~f~~~~v~~e~l~~il~aa~~APS~~n~Qpw~~ivv~~~~~~~~l~~~~~---------------- 65 (240)
T 1bkj_A 2 NNTIETILAHRSIRKFTAVPITDEQRQTIIQAGLAASSSSMLQVVSIVRVTDSEKRNELAQFAG---------------- 65 (240)
T ss_dssp CHHHHHHHTCCCCCCBCSCCCCHHHHHHHHHHHHTSCCGGGCCCEEEEECCCHHHHHHHHHHTT----------------
T ss_pred hHHHHHHHhCccccCCCCCCCCHHHHHHHHHHHHhCCCccCCCCEEEEEEcCHHHHHHHHHHhC----------------
Confidence 5789999999999999999999999999999999999999999999999999988888877541
Q ss_pred ccchhhhhhHHhhhhcCCCeEEEEEeecCCcccc----ccc--cccchhhccHHHHHHHHHHHHHHcCCccccccCCC-C
Q psy144 136 TDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEE----GKR--KKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLN-A 208 (254)
Q Consensus 136 ~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~----~~~--~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~-~ 208 (254)
.+.++.+||++++++.+....... +.. ....+..+|+|+++||++|+|+++||||||+|++. .
T Consensus 66 ----------~q~~~~~ap~~iv~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~qnl~LaA~~lGLgsc~ig~~~~~ 135 (240)
T 1bkj_A 66 ----------NQAYVESAAEFLVFCIDYQRHATINPDVQADFTELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNS 135 (240)
T ss_dssp ----------SCTHHHHSSEEEEEEEECHHHHHHCTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGG
T ss_pred ----------CCchhhcCchhhHHHHhhHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 134466899999998875421100 000 01124567999999999999999999999999873 4
Q ss_pred hHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEe
Q psy144 209 GPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE 253 (254)
Q Consensus 209 ~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~ 253 (254)
.++++++||||+++.++++++||||+.... ..+|+|+++++++
T Consensus 136 ~~~v~~~L~lp~~~~~~~~l~lGyp~~~~~--~~~R~p~~~~~~~ 178 (240)
T 1bkj_A 136 AAQVDELLGLPENSAVLFGMCLGHPDQNPE--VKPRLPAHVVVHE 178 (240)
T ss_dssp HHHHHHHTTCCTTEEEEEEEEEECBSCCCC--CCCCCCHHHHEEE
T ss_pred HHHHHHHhCcCCCeeEEEEEEEeccCCCCC--CCCCCchHHEEEE
Confidence 589999999999999999999999987653 4589999999875
No 39
>2ifa_A Hypothetical protein SMU.260; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: FMN; 2.30A {Streptococcus mutans} SCOP: d.90.1.1
Probab=100.00 E-value=7.8e-36 Score=248.43 Aligned_cols=185 Identities=15% Similarity=0.143 Sum_probs=137.6
Q ss_pred HHHHHHHHhccccCCCCCC-CCCHHHHHHHHHHh-ccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhc-c
Q psy144 56 EEFYQLMNARRTVRFFSDE-AVPKEIIHNIIKTA-GTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMG-K 132 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~F~~~-~V~~e~i~~il~~A-~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~-~ 132 (254)
|++.++|++|||||+|+++ +||.++|++||++| ++|||++|+|||+|+||++++.++.+.+++..... .... .
T Consensus 2 ~~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~aa~~~APS~~n~Qpw~f~vv~~~~~~~~~~~~~~~~l~----~~~~~~ 77 (208)
T 2ifa_A 2 SNFLDLQKQRRSIYALGKTVDLSKAELVALIQNAIKQAPSAFNSQTSRALVLFGQDSQDFWNKIAYSELE----KVTPAE 77 (208)
T ss_dssp CCHHHHHHHCCCCCCEESCCSSCHHHHHHHHHHHHHTSCCGGGCCCEEEEEEEHHHHHHHHHTHHHHHHH----TTSCHH
T ss_pred chHHHHHHhhhhHhccCCCCCCCHHHHHHHHHHHHhcCCCccccCCeEEEEEECHHHHHHHHHHHHHHHh----hcCChh
Confidence 3689999999999999998 99999999999999 89999999999999999998766644432211100 0000 0
Q ss_pred cccccchhhhhhHHhhhhcCCCeEEEEEeecCCcc------ccccccccchhhccHHHHHHHHHHHHHHcCCcccccc--
Q psy144 133 EWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFK------EEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTST-- 204 (254)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~------~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~-- 204 (254)
.|... ... ...+.+||++|+++.+..... +.+......+...|+|+++|||+|+|+++||||||++
T Consensus 78 ~~~~~-----~~~-~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~ 151 (208)
T 2ifa_A 78 AFAGT-----KAK-LESFAAGVGTILLFEDQAVVRNLEENFPLYAENFQPWSEQAHGIALYAIWLALAEQNIGMSVQHYN 151 (208)
T ss_dssp HHHHH-----HHH-HHHHHTSSEEEEEEEEHHHHHHHHHHCTTTGGGHHHHHHHHHHHHHHHHHHHHHHTTEEECCBCCT
T ss_pred hhhhh-----hHH-HHHHhhcceEEEEEecHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHHHHHCCCccchhccc
Confidence 11000 000 113578999998887643210 0011122245678999999999999999999999987
Q ss_pred CCCChHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEe
Q psy144 205 PLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVE 253 (254)
Q Consensus 205 ~~~~~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~ 253 (254)
++. .++++++||+|+++.++++++||||++... ..+|+|+++++++
T Consensus 152 ~~~-~~~v~~~l~lp~~~~~~~~i~lGy~~~~~~--~~~R~~~~e~v~~ 197 (208)
T 2ifa_A 152 PLV-DAQVAEKYDLPTNWKMRAQIPFGSIEAPAG--EKEFMADQERFKV 197 (208)
T ss_dssp TTT-HHHHHHHTTCCTTEEEEEEEEEEEESSCCC--CCCCCCGGGTEEE
T ss_pred ccc-hHHHHHHcCCCccceEEEEEEeeccCCCCC--CCCccchhheEEE
Confidence 444 489999999999999999999999987643 4589999999886
No 40
>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc 14579} SCOP: d.90.1.1
Probab=100.00 E-value=6.4e-36 Score=247.01 Aligned_cols=189 Identities=16% Similarity=0.223 Sum_probs=136.9
Q ss_pred hcHHHHHHHHHhccccCCCCCC-CCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhc
Q psy144 53 QRSEEFYQLMNARRTVRFFSDE-AVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMG 131 (254)
Q Consensus 53 ~~~~~~~e~i~~RRSvR~F~~~-~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~ 131 (254)
.+.|++.++|++|||+|+|+++ +||.|+|++||++|++|||++|+|||+|+||++++.+ ++.+.+......... .
T Consensus 3 ~~~m~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~aa~~APS~~n~Qpw~f~vv~~~~~~-~l~~~~~~~~~~~~~---~ 78 (200)
T 1ywq_A 3 ATTTNLKEAIVNRRSIRKVTKNDAITKERIEEVLKTALHAPTSFNMQSGRMVVLMDGEHE-KFWDIVKETLRARVP---A 78 (200)
T ss_dssp TTTSCHHHHHHHCCCCCCEECCTTSCHHHHHHHHHHHTTSCCGGGCCCEEEEEEEHHHHH-HHHHHHHHHHHHHSC---H
T ss_pred ccHHHHHHHHHhhhhHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCCCeEEEEEeCHHHH-HHHHHHHHHHHhcCC---h
Confidence 3457899999999999999997 9999999999999999999999999999999998754 455543221100000 0
Q ss_pred ccccccchhhhhhHHhhhhcCCCeEEEEEeecCCc------cccccccccchhhccHHHHHHHHHHHHHHcCCcccccc-
Q psy144 132 KEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGF------KEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTST- 204 (254)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~------~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~- 204 (254)
..|.. . ....+ .+..++.+++++.+.... ...+......+...++|+++||++|+|+++||||||++
T Consensus 79 ~~~~~----~-~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~LaA~~~Glgs~~~~~ 152 (200)
T 1ywq_A 79 ENFEA----T-VERLK-GFHAGVGTVLFFEDQATVEKMQENAPLYKDQFPFWSHQGNAMLQHTVWMLLSAEGIGASLQHY 152 (200)
T ss_dssp HHHHH----H-HGGGH-HHHTSSEEEEEEEEHHHHHHHHHHCGGGTTTHHHHHHHHHHHHHHHHHHHHHHTTCEECCBCC
T ss_pred hhhhh----h-HHHHH-HHhhcceEEEEecCchHHHHHHHhCccccccccchHHHhhHHHHHHHHHHHHHCCCccchhhc
Confidence 00000 0 00011 234577767666543210 00111222345678999999999999999999999976
Q ss_pred -CCCChHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEeC
Q psy144 205 -PLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254 (254)
Q Consensus 205 -~~~~~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~~ 254 (254)
++.. ++++++||+|+++.++++++||||++... ..+|+|++|+++++
T Consensus 153 ~~~~~-~~~~~~l~lp~~~~~~~~i~lGy~~~~~~--~~~R~~~~e~v~~~ 200 (200)
T 1ywq_A 153 NPIVD-AEVKETWNIPAEWSLVGQMPFGEPNEQPA--ERTFLPTEDVVKFY 200 (200)
T ss_dssp TTTTH-HHHHHHTTCCTTEEEEEEEEEEEECSCCC--CCCCCCHHHHCCCC
T ss_pred ccccH-HHHHHHhCCCCCceEEEEEEeeccCCCCC--ccccCCHHHeeEeC
Confidence 5554 89999999999999999999999987643 45799999998874
No 41
>2wqf_A Copper induced nitroreductase D; COPR regulated protein, oxidoreductase; HET: FMN; 1.35A {Lactococcus lactis}
Probab=100.00 E-value=2.8e-35 Score=243.34 Aligned_cols=187 Identities=18% Similarity=0.154 Sum_probs=134.4
Q ss_pred HHHHHHHhccccCCCCCC-CCCHHHHHHHHHHh-ccCCCCCCCCCeEEEEEeCHHHHHHHHH-HHHHhhh-hhhhhhh-c
Q psy144 57 EFYQLMNARRTVRFFSDE-AVPKEIIHNIIKTA-GTSPSGAHTEPWTFVIVEDKDMKAKIRD-IVESEER-INYDKRM-G 131 (254)
Q Consensus 57 ~~~e~i~~RRSvR~F~~~-~V~~e~i~~il~~A-~~APS~~n~qpw~f~vv~~~~~~~~l~~-~~~~~~~-~~~~~~~-~ 131 (254)
++.++|++|||||+|+++ | |.|+|++||++| ++|||++|+|||+|+||++++.++ |.+ .+..... +...... .
T Consensus 2 ~~~~~i~~RrSvR~f~~~~~-~~e~l~~il~aa~~~APS~~n~Qpw~f~vv~~~~~~~-l~~~~~~~~~~~~~~~~~~~~ 79 (202)
T 2wqf_A 2 SFIKSLENRRTIYALGRNVQ-DEEKVIETIKEAVRFSPTAFNSQTGRLLILTGDAQDK-LWDEIVAPELKAAMEAQGVPE 79 (202)
T ss_dssp CHHHHHHHCCBCCCEECCCS-CHHHHHHHHHHHHHTSCCGGGCCCEEEEEEEHHHHHH-HHHHTHHHHHHHHHHC-----
T ss_pred hHHHHHHhhhhHHhcCCCCC-CHHHHHHHHHHHHHhCCCccCCCCeEEEEEEChHHHH-HHHHHHHHHHhhccccccCCH
Confidence 578999999999999998 8 999999999999 899999999999999999987544 655 2221110 0000000 0
Q ss_pred ccccccchhhhhhHHhhhhcCCCeEEEEEeecCCcc------ccccccccchhhccHHHHHHHHHHHHHHcCCcccccc-
Q psy144 132 KEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFK------EEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTST- 204 (254)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~------~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~- 204 (254)
..|..... . ...+..+|..++++.+..... ..+..+...+..+|+|+++|||+|+|+++||||||++
T Consensus 80 ~~~~~~~~-----~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~ 153 (202)
T 2wqf_A 80 SAWDNTRA-----K-LDGFKAAFGTILFFEDQAVVKNLQEQFALYADNFPVWSEQGSGIISVNVWTALAELGLGANLQHY 153 (202)
T ss_dssp -------C-----H-HHHHHTSSEEEEEEEEHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEECC
T ss_pred HHHHhhHH-----H-HHHHHhcCCeEEEEeCchHHHHHHhhccchhhcchhhhHHHHHHHHHHHHHHHHHCCCccchhhc
Confidence 01100000 0 112456888887776532110 0111222345678999999999999999999999998
Q ss_pred -CCCChHHHHhhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccceEeC
Q psy144 205 -PLNAGPALRTLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDIIVEF 254 (254)
Q Consensus 205 -~~~~~~~v~~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei~~~~ 254 (254)
+++ .++++++||+|+++.++++++||||++... ..+|+|++++++++
T Consensus 154 ~~~~-~~~~~~~l~lp~~~~~~~~i~lGyp~~~~~--~~~R~~~~e~v~~~ 201 (202)
T 2wqf_A 154 NPLI-DEAVAKEWNLPESWKLRGQLVFGSIEAPAG--EKTFMDDADRFIVA 201 (202)
T ss_dssp TTTT-HHHHHHHTTCCTTEEEEEEEEEEEECSCCC--CCCCCCGGGTCCCC
T ss_pred Cccc-HHHHHHHhCcCccceEEEEEEecCCCCCCC--ccCcCCHHHeeeec
Confidence 454 489999999999999999999999988653 45899999999874
No 42
>2r01_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.15A {Chlorobium tepidum tls}
Probab=100.00 E-value=6.5e-36 Score=250.16 Aligned_cols=155 Identities=18% Similarity=0.271 Sum_probs=125.2
Q ss_pred HHHHHHHHHhccccCCCCCC-CCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccc
Q psy144 55 SEEFYQLMNARRTVRFFSDE-AVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKE 133 (254)
Q Consensus 55 ~~~~~e~i~~RRSvR~F~~~-~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 133 (254)
.|++.++|++|||+|.|+++ +|+.++|++||++|++|||++|+|||+|+||++++.+++|.+.+ .
T Consensus 12 ~m~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~aa~~APS~~n~qpw~f~vv~~~~~~~~l~~~~--------------~ 77 (210)
T 2r01_A 12 IMKLRELVARSRSIRRFDEHVAVNDATLRDLVELVCYTPSAANRQLLRFLPVTGADMSDKVFPCL--------------K 77 (210)
T ss_dssp --CHHHHHHHCCBCCCBCTTSCCCHHHHHHHHHHHTTSCCGGGCCCCEEEEEEHHHHHHTTGGGB--------------C
T ss_pred cCcHHHHHHhCceeeccCCCCCCCHHHHHHHHHHHHhCCCCCCCCCEEEEEEECHHHHHHHHHHH--------------h
Confidence 37899999999999999998 99999999999999999999999999999999987666554321 0
Q ss_pred ccccchhhhhhHHhhhhcCCC-eEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHH
Q psy144 134 WTTDLRPLKTSWQKEYLTTAP-YLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPAL 212 (254)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~Ap-~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v 212 (254)
|...+ ..+.+..+.+|| ++|+++.+... ..+..+++|+++|||+|+|+++||||||+|+++. +.+
T Consensus 78 ~~~~~----~~~~~~~~~~ap~~~ivv~~~~~~---------~~~~~~d~g~a~~nl~LaA~~lGlgs~~~~~~~~-~~~ 143 (210)
T 2r01_A 78 WAGYL----EDWPGPEPGERPAAALVMLCRNED---------LPGAACDSGIAAQTIMLGAAEKELGGCIVAAIDR-ERL 143 (210)
T ss_dssp CCTTC----TTCCSCCTTSSCSEEEEEEEEGGG---------GGGTHHHHHHHHHHHHHHHHHTTCEEEEECCBCH-HHH
T ss_pred hhhhh----hhhcccchhcCCcEEEEEEecCcc---------CcchHHHHHHHHHHHHHHHHHCCCCEeeEcccCH-HHH
Confidence 10000 011234467787 77888776432 1246789999999999999999999999999875 899
Q ss_pred HhhcCCCCCceEEEEEeeccCCCCC
Q psy144 213 RTLLDRPGNEKLALLLPIGYPALDC 237 (254)
Q Consensus 213 ~~~Lglp~~~~~~~~l~vGyp~~~~ 237 (254)
+++||+|+++.++++++||||++..
T Consensus 144 ~~~l~lp~~~~~~~~i~lGy~~~~~ 168 (210)
T 2r01_A 144 MASLGIPDAWTVLLVIALGKPAETV 168 (210)
T ss_dssp HHHHTCCTTEEEEEEEEEECBCSCE
T ss_pred HHHcCcCCCceEEEEEEEeCCCCCC
Confidence 9999999999999999999998754
No 43
>3hoi_A FMN-dependent nitroreductase BF3017; YP_212631.1, structural genomics, joint center for S genomics, JCSG; HET: MSE FMN FLC; 1.55A {Bacteroides fragilis nctc 9343}
Probab=100.00 E-value=1.6e-34 Score=237.99 Aligned_cols=166 Identities=14% Similarity=0.227 Sum_probs=131.3
Q ss_pred cHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHh----------ccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhh
Q psy144 54 RSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTA----------GTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEER 123 (254)
Q Consensus 54 ~~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A----------~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~ 123 (254)
..|+|.++|++|||+|+|++++|+.++|++||++| ++|||++|+|||+|+|+.+++..
T Consensus 15 ~~~~~~~~i~~RrS~R~f~~~~v~~e~l~~il~~a~g~~~~~~~~~~aPS~~n~qp~~~~vv~~~~~y------------ 82 (193)
T 3hoi_A 15 RAGLLMKALSERHSTREYASKALSNTDLSDLLWAANGINRSSEGKRTAPSAMNRQDIDIYVVLPQGTY------------ 82 (193)
T ss_dssp CSCCHHHHHHHCCCCCCCCSSCCCHHHHHHHHHHHHCEEETTTTEESSCCGGGCCCEEEEEEETTEEE------------
T ss_pred CCCCHHHHHhhcCCccccCCCCCCHHHHHHHHHHhcCCCcccCCcccCCCCCCcCceEEEEEcCCEeE------------
Confidence 45789999999999999999999999999999999 99999999999999999887420
Q ss_pred hhhhh---hhcccccccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCcc
Q psy144 124 INYDK---RMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVT 200 (254)
Q Consensus 124 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs 200 (254)
.|.. .+......+.... ....+.++.+||++|+++++.....+.+..+.+.+..+|+|+++|||+|+|+++|||+
T Consensus 83 -~y~~~~~~l~~~~~~~~~~~-~~~~~~~~~~ap~~iv~~~~~~~~~~~~~~~~~~~~~~d~g~a~qnl~LaA~~lGlg~ 160 (193)
T 3hoi_A 83 -LYDAKGHKLNLISEGDHRSA-VAGGQAFVNNAPVSLVLVSDLSKLGDAKSNHVQLMGAMDAGIVSQNISLFCSAARLAT 160 (193)
T ss_dssp -EEETTTTEEEEEEESCCHHH-HHTTCGGGGGSSEEEEEEEEGGGTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTEEE
T ss_pred -EEccccCEEEEccCcchHHH-HhcCchhHhCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 0000 0000000111100 0123567899999999999876544433344456778999999999999999999999
Q ss_pred ccccCCCChHHHHhhcCCCCCceEEEEEeeccCC
Q psy144 201 LTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPA 234 (254)
Q Consensus 201 ~~~~~~~~~~~v~~~Lglp~~~~~~~~l~vGyp~ 234 (254)
||+++++. ++++++||+|+++.++++++||||+
T Consensus 161 ~~~~~~~~-~~v~~~l~l~~~~~~~~~i~iGyp~ 193 (193)
T 3hoi_A 161 VPRASMDL-VRLKAALKLKDTQMPMMNHPVGYFK 193 (193)
T ss_dssp CCBCCCCH-HHHHHHHTCCTTEEEEEEEEEEECC
T ss_pred EEEeeecH-HHHHHHcCCCCCceEEEEEEccCCC
Confidence 99999875 9999999999999999999999985
No 44
>3hj9_A Oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 2.00A {Ralstonia eutropha}
Probab=100.00 E-value=3e-34 Score=242.25 Aligned_cols=183 Identities=15% Similarity=0.160 Sum_probs=141.4
Q ss_pred CCCCCCccCCCccCchhHhhhcHHHHHHHHHhccccCCCCCCCCCHHHHHHHHH----------HhccCCCCCCCCCeEE
Q psy144 33 PEALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIK----------TAGTSPSGAHTEPWTF 102 (254)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~----------~A~~APS~~n~qpw~f 102 (254)
....+.|+++.... ...++|.++|++|||+|+|++++|+.++|++||+ ++++|||++|+|||+|
T Consensus 23 ~~~~~~i~Lp~p~~------~~~~~~~~~i~~RrS~R~f~~~~v~~e~L~~lL~~~~g~~~~~~aar~aPSa~n~qp~~~ 96 (223)
T 3hj9_A 23 GTSERVITLPEPDR------TSGMPLMGTLWLRKSTREFDQQPLPLKQLSELLWAAAGVNRSLGGGRTAPSPYGETVIDV 96 (223)
T ss_dssp SCCCSEEECCCCCC------SCSSBHHHHHHHCCCCCCBCCCCCCHHHHHHHHHHHHCEEETGGGEESSCCGGGCCCEEE
T ss_pred CCCCCeeECCCCCC------CCCcCHHHHHHhcCCccccCCCCCCHHHHHHHHHHhhCCCccccCceecCCCCCccceEE
Confidence 44556777776552 2458899999999999999999999999999995 9999999999999999
Q ss_pred EEEeCHHHHHHHHHHHHHhhhhhhhh---hhcccccccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhh
Q psy144 103 VIVEDKDMKAKIRDIVESEERINYDK---RMGKEWTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHE 179 (254)
Q Consensus 103 ~vv~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~ 179 (254)
+||.+++..+ |.. .+......++... ...+.++.+||++|+++++.....+.+..+.+.+..
T Consensus 97 ~vv~~~~~y~-------------y~~~~~~L~~~~~~~~~~~--~~~~~~~~~Ap~~ivv~~~~~~~~~~y~~~~~~~~~ 161 (223)
T 3hj9_A 97 YVALPAGLYR-------------YDPVHHCLELKRAADLRSM--TGYQDFVGMAPLDLVFVANHGRMQEMPPKLRETFSA 161 (223)
T ss_dssp EEEETTEEEE-------------EETTTTEEEEEESEECTTC--SSEECCCCCCSEEEEEEEEGGGCTTSCGGGHHHHHH
T ss_pred EEEeCCeEEE-------------EcCCCCEEEEccccCHHHH--hcCCchhccCCEEEEEEEEhhHHHHHHHHHHHHHHH
Confidence 9998764210 100 0000000111111 122566889999999999876554444444456778
Q ss_pred ccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcCCCCCceEEEEEeeccCCCCC
Q psy144 180 MSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPALDC 237 (254)
Q Consensus 180 ~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp~~~~~~~~l~vGyp~~~~ 237 (254)
+|+|+++|||+|+|+++|||+||+|+++. ++++++||+|+++.++++++||||+++.
T Consensus 162 ~dag~a~qnl~LaA~alGLgsc~ig~~~~-~~v~~~L~l~~~~~~~~~i~iGyp~~~~ 218 (223)
T 3hj9_A 162 AAAGAMAENAYLYCASAGLGAVVRGWLNR-RQLAEHMSLNEDEEPILSQTIGRAASHV 218 (223)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCCH-HHHHHHTTCCTTEEEEEEEEEECBCCC-
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeeeCH-HHHHHHcCCCCCceEEEEEEccCCCCCC
Confidence 99999999999999999999999999886 9999999999999999999999998864
No 45
>3eo7_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.80A {Anabaena variabilis atcc 29413}
Probab=99.96 E-value=1.9e-29 Score=236.49 Aligned_cols=194 Identities=12% Similarity=0.066 Sum_probs=136.8
Q ss_pred CCCCCCccCCCccC---chhHhhhcHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhc-----------cCCCCCCCC
Q psy144 33 PEALDHISYDFVKK---SVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAG-----------TSPSGAHTE 98 (254)
Q Consensus 33 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~-----------~APS~~n~q 98 (254)
++++.++|+..... +..++....++|.++|++|||+|+|++++|+.++|+.||++|. +|||++|+|
T Consensus 299 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~i~~RRSvR~F~~~~I~~e~L~~lL~aa~~~~~~~~~~~r~aPSagn~q 378 (511)
T 3eo7_A 299 LEDKYNFPFCLKISTVSAPIYWGENLSDLEITMHKRRSTRAYNGEELTFDELKALLDFTYQPQNYIDQSLDNSPDYFDLN 378 (511)
T ss_dssp CCCSCCCTTSCEEECCCCCCCCCGGGHHHHHHHHHCCCCSCBCCCCEEHHHHHHHHHHHHCGGGGGGGTCCSSCCCSCGG
T ss_pred cccccccccccccccCCCCCCCCcCcccHHHHHHhCCCccccCCCCCCHHHHHHHHHHhcCCccccccCCccCCCCCCcC
Confidence 45566777743321 1112223678999999999999999999999999999999995 499999999
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHhhhhhhhhh---hcccccccchh-hh-hhHHhhhhcCCCeEEEEEeecCCcccccccc
Q psy144 99 PWTFVIVEDKDMKAKIRDIVESEERINYDKR---MGKEWTTDLRP-LK-TSWQKEYLTTAPYLVVVFKQTYGFKEEGKRK 173 (254)
Q Consensus 99 pw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~-~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~ 173 (254)
||+++|+.+. .+.|...++ .|... ...-...+++. +. ....+.++.+||++|+++++..+..+.+..+
T Consensus 379 p~~~yvvv~~--v~gL~~G~Y-----~y~~~~h~L~~i~~~~~~~~l~~~~~~q~~~~~Ap~~iv~~ad~~~~~~~yg~~ 451 (511)
T 3eo7_A 379 LIETFIAVCG--VQGLEAGCY-----YYAPKAQELRQIRFKNFRRELHFLCLGQELGRDAAAVIFHTSDLKSAIAQYGDR 451 (511)
T ss_dssp GCEEEEEESS--EETSCSEEE-----EEETTTTEEEEEEESCCHHHHHHHTTTCHHHHHCSEEEEEEECHHHHHHHHCTT
T ss_pred cEEEEEEEec--cCCCCCeeE-----EEcCCCCEEEEecCccHHHHHHHHHcCCccccCCCEEEEEEEECchhhhhhchh
Confidence 9998776542 000000000 00000 00000001110 00 0123567889999999998865433333334
Q ss_pred ccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcCCCCCceEEEEEeeccCC
Q psy144 174 KHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRPGNEKLALLLPIGYPA 234 (254)
Q Consensus 174 ~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp~~~~~~~~l~vGyp~ 234 (254)
.+.+..+|+|+++|||+|+|+++||||||+|+|+. ++++++||||+++.++++++||||+
T Consensus 452 ~~~~~~~dag~a~q~l~LaA~~lGlgs~~ig~~~~-~~v~~~L~lp~~~~~~~~i~iGyp~ 511 (511)
T 3eo7_A 452 VYRYLHMDAGHLGQRLNLAAIQLNLGVSGIGGFFD-DQVNEVLGIPNDEAVIYITTLGRPR 511 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCCH-HHHHHHHTCCTTCEEEEEEEEECBC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCCCeEEEcccCH-HHHHHHhCcCCCceEEEEEEeeccC
Confidence 45677899999999999999999999999999986 8999999999999999999999984
No 46
>1vkw_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 2.00A {Thermotoga maritima} SCOP: d.90.1.2
Probab=99.86 E-value=2.2e-22 Score=168.97 Aligned_cols=121 Identities=13% Similarity=0.196 Sum_probs=101.0
Q ss_pred HHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHhc-cCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhccc
Q psy144 55 SEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTAG-TSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKE 133 (254)
Q Consensus 55 ~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A~-~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 133 (254)
.+++.++|++|||+|+|++++||+|+|++|+++|+ +|||. |+ + +
T Consensus 12 ~~~~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~r~APS~----------v~-----~----------------~---- 56 (218)
T 1vkw_A 12 HMNIFEAIENRHSVRDFLERKMPERVKDDIENLLVKFITKK----------LD-----W----------------K---- 56 (218)
T ss_dssp CCCHHHHHHHCCBCCCBCCSCCCHHHHHHHHHCCCCCSSCC----------CC-----C----------------E----
T ss_pred HHHHHHHHHhCccccccCCCCCCHHHHHHHHHHHHHhCCHH----------HH-----h----------------c----
Confidence 46789999999999999999999999999999999 99992 11 0 0
Q ss_pred ccccchhhhhhHHhhhhcCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHH
Q psy144 134 WTTDLRPLKTSWQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALR 213 (254)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~ 213 (254)
+ .+.+||++|+++.+... +...|+|+++|||+|+|+++||||||+|+ ..
T Consensus 57 ----l----------~~~~Ap~~ivv~~~~~~-----------~~~~d~g~a~~nl~LaA~~lGlgtcw~~~-~~----- 105 (218)
T 1vkw_A 57 ----I----------NLSSFPSYIYAKAEKHF-----------DELVEYGFQGEQIVLFLTAQGFGTCWMAR-SP----- 105 (218)
T ss_dssp ----E----------ECSSSSEEEECCCCSSH-----------HHHHHHHHHHHHHHHHHHHTTCEEEEESC-CS-----
T ss_pred ----e----------eeCCCCEEEEEEEeCCc-----------ChHHHHHHHHHHHHHHHHHCCCcEEEecc-CC-----
Confidence 0 36799999999876431 23579999999999999999999999998 42
Q ss_pred hhcCCCCCceEEEEEeeccCCCCCCCCCCCCCCcccc
Q psy144 214 TLLDRPGNEKLALLLPIGYPALDCTVPNLKRKDIEDI 250 (254)
Q Consensus 214 ~~Lglp~~~~~~~~l~vGyp~~~~~~p~~~Rkpl~ei 250 (254)
++.++++++||||++.. ...+|+|++++
T Consensus 106 -------~~~~~~~i~lGyp~~~~--~~~~R~~~~ei 133 (218)
T 1vkw_A 106 -------HPDVPYIIVFGYPRTRN--FTRKRRPITSF 133 (218)
T ss_dssp -------STTCSCEEEEECBSCCC--CCCCCCCHHHH
T ss_pred -------CceEEEEEEEeccCCcc--CccCCCCHHHH
Confidence 67899999999998763 34689999988
No 47
>3eo7_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.80A {Anabaena variabilis atcc 29413}
Probab=99.84 E-value=1.2e-21 Score=183.49 Aligned_cols=190 Identities=12% Similarity=0.025 Sum_probs=128.4
Q ss_pred CCCCCCCCCCCCccCCCccCchhHhhhcHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHHh----------------cc
Q psy144 27 EFAPALPEALDHISYDFVKKSVEDIRQRSEEFYQLMNARRTVRFFSDEAVPKEIIHNIIKTA----------------GT 90 (254)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~RRSvR~F~~~~V~~e~i~~il~~A----------------~~ 90 (254)
-+|...|...+..+.......+ .... .+.+-+.|++++++.++|..||+++ |+
T Consensus 31 ldw~~qP~pfk~y~~~~~~~l~-~~~~----------~~~~~~~~~~~~l~l~~Ls~lL~~~~gi~~~~~~~~~~~~~R~ 99 (511)
T 3eo7_A 31 LDWAKQPVPFKEYKIGSAIDLK-PYLQ----------ETPEVFVNDTNGQWWQRLSRLLFRSYGLTARMPSMGNTVYLRA 99 (511)
T ss_dssp CCGGGCCCSSCCCSSSEEEECG-GGSS----------CCC-----CHHHHHHHHHHHHHHHHHCEEEEEEETTEEEEEES
T ss_pred CCcccCCCccccCCCCCccCCC-Ccch----------hcccccCCCCCCCCHHHHHHHHHHhhCCceeccCCCCcceecc
Confidence 3677777777766644322111 1111 1445568999999999999999865 78
Q ss_pred CCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhh---hhcccccccchh-hh-hhHHhhhhcCCCeEEEEEeecCC
Q psy144 91 SPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDK---RMGKEWTTDLRP-LK-TSWQKEYLTTAPYLVVVFKQTYG 165 (254)
Q Consensus 91 APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~-~~~~~~~~~~Ap~~ii~~~~~~~ 165 (254)
+||++|+|||+++|+.+. .+.|...++ .|.. .+......+++. +. ....+.++.+||++|+++++..+
T Consensus 100 aPSagnl~P~e~yvv~~~--v~~l~~GiY-----~Y~p~~h~L~~v~~~~~~~~L~~a~~~q~~~~~Ap~~iv~~a~~~r 172 (511)
T 3eo7_A 100 APSAGGLYPAEVYVVSRG--TPLLSPGLY-----NYQCRTHSLIHYWESDVWQSLQEACFWHPALESTQLAIIVTAVFYR 172 (511)
T ss_dssp SCCGGGCCCEEEEEEECC--CSSSCSEEE-----EEETTTTEEEEEECSCCHHHHHHHTTTCHHHHHCSEEEEEEEEHHH
T ss_pred ccCCcccCceEEEEEECC--CCCCCCEEE-----EEECCCCEEEEEecccHHHHHHHHhcCCccccCCCEEEEEEEEehH
Confidence 999999999999999762 111111110 1110 000111112211 11 11235678899999999998766
Q ss_pred ccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcCCC-CCceEEEEEeeccCCC
Q psy144 166 FKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLDRP-GNEKLALLLPIGYPAL 235 (254)
Q Consensus 166 ~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lglp-~~~~~~~~l~vGyp~~ 235 (254)
..+.+..+...+..+|+|+++||++|+|+++|||+||+++|+. ++++++|||| +++.++++++||+..+
T Consensus 173 ~~~ky~~~~~~~~~~D~G~a~qnl~LaA~~lGlg~~~ig~f~~-~~v~~~L~L~~~~~~~~~~~~lG~~~~ 242 (511)
T 3eo7_A 173 SAWRYEDRAYRRICLDTGHLLGNIELSAAITDYRPHLIGGFID-EAVNDLLYIDPLQEGAIAVLPLADLLD 242 (511)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHTTEEECCBCCSCH-HHHHHHHTCCTTTEEEEEEEEEEETTS
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEECeeCH-HHHHHHhCcCCccceeEEEEEecCCcc
Confidence 5555555566788899999999999999999999999999997 9999999996 7889999999998654
No 48
>2ymv_A ACG nitroreductase; oxidoreductase, dormancy, reduced FMN; HET: MSE FNR PGE; 1.60A {Mycobacterium smegmatis}
Probab=99.81 E-value=1.9e-19 Score=159.87 Aligned_cols=177 Identities=16% Similarity=0.179 Sum_probs=129.7
Q ss_pred HHHHHHHHhccccCC-CCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhh-----hh
Q psy144 56 EEFYQLMNARRTVRF-FSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYD-----KR 129 (254)
Q Consensus 56 ~~~~e~i~~RRSvR~-F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~-----~~ 129 (254)
..++++|..|||.|. |.++||+.+++..|.++|.. ..|+++++++. .++.|.+++.....+.+. ..
T Consensus 112 ~~L~~aI~~RrT~R~~f~~~pvp~~~l~~L~~aa~~-------~g~~l~~~~~~-~~~~la~~~~~a~~~~~~d~~~~~E 183 (330)
T 2ymv_A 112 RKRADAILARRTDRLPMSAYVDWDAFETLLRARLGD-------GPVHMDTLGED-VREEVAEAAALTESLRLYDAAYHSE 183 (330)
T ss_dssp HHHHHHHHHCCBCCSCCBCCTTHHHHHHHHHHHHTT-------CSSEEEECCGG-GHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred hHHHHHHhhcCcCCCCCCCCCCCHHHHHHHHHhccc-------CCeEEEEcChh-HHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 469999999999996 99999999999999999884 45899999877 577888887655443211 11
Q ss_pred hccccccc------ch-------hhh------hh--------HHhhhhcCCCeEEEEEeecCCccccccccccchhhccH
Q psy144 130 MGKEWTTD------LR-------PLK------TS--------WQKEYLTTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSV 182 (254)
Q Consensus 130 ~~~~~~~~------~~-------~~~------~~--------~~~~~~~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 182 (254)
+ ..|... +. ... .. .....+.++|++++++.+.++ ...++++
T Consensus 184 l-~~W~~~~~~~DGip~~alg~~~~~~~~~~~R~f~~~~~~~~~~~~~~~ap~~~vl~~~~d~----------~~~~~d~ 252 (330)
T 2ymv_A 184 L-AWWTTPFATEDGIPQTALISAEESERVAVSRDFPVAPHSSRRPALNNDAATIVVLSTDGYS----------REDALDA 252 (330)
T ss_dssp H-HHTTCTTCSSSSCCGGGSCCHHHHTTCSSCCCCCCCSSCCCSTTCSSCCCEEEEEEESCCS----------HHHHHHH
T ss_pred H-HHhcCccCCCCCcCHHhcCCcccccccceeecccCccccccccccccCCCeEEEEEeCCCC----------HHHHHHH
Confidence 1 123210 00 000 00 001124688998888876542 2668899
Q ss_pred HHHHHHHHHHHHHcCCccccccCCCC----hHHHHhhcCCCCCceEEEEEeeccCCCCC-CCCCCCCCCcccceEe
Q psy144 183 SLACGIMLAAIQYCGLVTLTSTPLNA----GPALRTLLDRPGNEKLALLLPIGYPALDC-TVPNLKRKDIEDIIVE 253 (254)
Q Consensus 183 g~a~~~l~Laa~a~Glgs~~~~~~~~----~~~v~~~Lglp~~~~~~~~l~vGyp~~~~-~~p~~~Rkpl~ei~~~ 253 (254)
|+++|+++|+|+++||||||++.+.. .+.++++||+|+ .++++++||||+.+. ..+..+|+|++|++++
T Consensus 253 G~a~q~~lLaAt~~GL~t~~~~~~~e~~~~~~~vr~~lg~p~--~~~~~i~lGy~~~~~~~~~~~~Rrpl~ev~~~ 326 (330)
T 2ymv_A 253 GEGLSKVLLECTMSGLATCPVTHVTELHTSRDIIGRLIVRDA--CPQVLVRIGLAPALDEVPPPTPRRPVDAFLEV 326 (330)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECGGGSSHHHHHHHHTTSSTTC--EEEEEEEEEBCCTTSCCCCCCCCCCHHHHEEE
T ss_pred HHHHHHHHHHHHHCChhhccchhhhhhhHHHHHHHHHhCCCC--ceEEEEEeecCCCCCCCCCCCCCCCHHHhccc
Confidence 99999999999999999999986432 368999999984 599999999998743 2345789999999976
No 49
>2ymv_A ACG nitroreductase; oxidoreductase, dormancy, reduced FMN; HET: MSE FNR PGE; 1.60A {Mycobacterium smegmatis}
Probab=99.35 E-value=1.6e-12 Score=115.31 Aligned_cols=85 Identities=18% Similarity=0.245 Sum_probs=64.2
Q ss_pred CCCCCCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccccccchhhhhhHHhhhh
Q psy144 71 FSDEAVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYL 150 (254)
Q Consensus 71 F~~~~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (254)
++..+|+.++|++||++|++|||++|+|||+|+|+.+
T Consensus 2 ~~~~~v~~~~l~~~l~~a~~APs~~n~qpw~~~~~~~------------------------------------------- 38 (330)
T 2ymv_A 2 MSDTRLDVATLANAVQLAARAPSLHNTQPWRLIAEDG------------------------------------------- 38 (330)
T ss_dssp -CTTSCCHHHHHHHHHHHTTCCCGGGCCCEEEEEETT-------------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHhCcCcCCCcCeEEEEECC-------------------------------------------
Confidence 3556899999999999999999999999999998743
Q ss_pred cCCCeEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCcccccc
Q psy144 151 TTAPYLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTST 204 (254)
Q Consensus 151 ~~Ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~ 204 (254)
.|.++.+......... ....+..+|||+|++||+++|+++|||++|.-
T Consensus 39 -----~i~~~~d~~~~~~~~d-~~~~~~~id~Gaa~~nl~laa~~~Gl~~~~~~ 86 (330)
T 2ymv_A 39 -----ELKLFLDPSRVVRSTD-RSSREAVMSCGVLLDHLRVALAAAGWDTEVQR 86 (330)
T ss_dssp -----EEEEEECGGGCCTTTS-GGGHHHHHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred -----EEEEEecCcccccccC-CCcchHHHhHHHHHHHHHHHHHHCCCCeeEee
Confidence 2344444433222111 11234578999999999999999999988864
No 50
>1vkw_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 2.00A {Thermotoga maritima} SCOP: d.90.1.2
Probab=99.28 E-value=4.1e-13 Score=112.38 Aligned_cols=79 Identities=10% Similarity=0.127 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHhhhhhhhhhhcccccccchhhhhhHHhhhhcCCC
Q psy144 75 AVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDKDMKAKIRDIVESEERINYDKRMGKEWTTDLRPLKTSWQKEYLTTAP 154 (254)
Q Consensus 75 ~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ap 154 (254)
+++.++|++|+++|++|||++|+|||+|++++++ . . +..+|
T Consensus 139 ~~~~e~l~~il~aa~~APS~~N~Qpw~f~vv~~~-~-------~-------------------------------~~~ap 179 (218)
T 1vkw_A 139 EELPPEIVKIVEMTILAPSALNRQPWKIKYTGGE-L-------C-------------------------------ISSER 179 (218)
T ss_dssp GGSCHHHHHHHHHHHTSCCGGGCCCCEEEECSSE-E-------E-------------------------------EECSC
T ss_pred CCCHHHHHHHHHHHHhCcCCCCCCCEEEEEECCe-E-------E-------------------------------EcCCC
Confidence 5799999999999999999999999999999873 1 0 01111
Q ss_pred eEEEEEeecCCccccccccccchhhccHHHHHHHHHHHHHHcCCccccccCCCChHHHHhhcC
Q psy144 155 YLVVVFKQTYGFKEEGKRKKHYYHEMSVSLACGIMLAAIQYCGLVTLTSTPLNAGPALRTLLD 217 (254)
Q Consensus 155 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~Laa~a~Glgs~~~~~~~~~~~v~~~Lg 217 (254)
.+|+|+|++||+|+|+++||++|.+.+... +.++++|+
T Consensus 180 ------------------------~~D~gia~~nl~laA~~~Gl~~~~~~~~~~-~~~~~~~~ 217 (218)
T 1vkw_A 180 ------------------------PVDLGIALSHAYLTAREIFKREPVIQKRGE-DTYCLILN 217 (218)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHSSCCEEEEETT-TEEEEESC
T ss_pred ------------------------hhhHHHHHHHHHHHHHHcCCCeeeecCChh-HHHHHhcC
Confidence 469999999999999999999997766554 66666654
No 51
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=64.62 E-value=5.7 Score=28.27 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcccc-------CCCCCC---CCCHHHHHHHHHHhccCCCCCCCCCeEEEEEeCH
Q psy144 55 SEEFYQLMNARRTV-------RFFSDE---AVPKEIIHNIIKTAGTSPSGAHTEPWTFVIVEDK 108 (254)
Q Consensus 55 ~~~~~e~i~~RRSv-------R~F~~~---~V~~e~i~~il~~A~~APS~~n~qpw~f~vv~~~ 108 (254)
-++++.+|++.--. |...+. -.+.+++.-+++.++.-||..+.-||+.+|....
T Consensus 35 ykdLl~lmr~~F~~~DIaLNYrD~eGDLIrilddeDv~lmi~~sr~~~s~k~~FPWeLhvT~~d 98 (107)
T 1oey_J 35 LKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQKD 98 (107)
T ss_dssp HHHHHHHHHHHHCCSSEEEEEECTTSCEEECCSHHHHHHHHHHCCCCCCTTCBCSSCEEEEETT
T ss_pred HHHHHHHHHHHhcccceeeeeecCCCCEEEEcchHHHHHHHHHhhcCcccccccceeEEEeecc
Confidence 35666666543221 223332 4699999999999999999999999999988654
Done!